Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79679.t1 | XP_003601756.2 | 97.4 | 952 | 25 | 0 | 1 | 952 | 5 | 956 | 0.00E+00 | 1793.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79679.t1 | Q9FYG2 | 48.5 | 970 | 433 | 16 | 2 | 918 | 35 | 990 | 5.1e-224 | 779.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79679.t1 | G7JBF2 | 97.4 | 952 | 25 | 0 | 1 | 952 | 5 | 956 | 0.0e+00 | 1793.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05686 | MS.gene79679 | 0.809517 | 1.82E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 231 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATTGTAAATTTCTGTTTC+TGG | 0.128293 | 3.1:+64737395 | None:intergenic |
| CATCCCGAGGTTCTTGAATT+TGG | 0.192741 | 3.1:+64737440 | None:intergenic |
| TATAATCCCTTGCTCTTTCT+TGG | 0.193263 | 3.1:+64736091 | None:intergenic |
| GGGATTATACACATAGTTTC+TGG | 0.215272 | 3.1:-64736077 | MS.gene79679:CDS |
| AATTTCATGCTCATTATAAA+AGG | 0.218703 | 3.1:+64741928 | None:intergenic |
| TGAGTTTCTATTGAAGAATA+TGG | 0.231372 | 3.1:+64737505 | None:intergenic |
| GCCTCCACCACTTGTCTAAA+TGG | 0.241617 | 3.1:-64734964 | MS.gene79679:CDS |
| TCATTGGCATAACAATATTC+TGG | 0.250713 | 3.1:+64737361 | None:intergenic |
| TTCGAAAAGATGGTCATAAT+TGG | 0.253911 | 3.1:-64743997 | MS.gene79679:CDS |
| AATGGATATGTCACCGGTTT+AGG | 0.257839 | 3.1:-64734946 | MS.gene79679:CDS |
| TTGCATTCACTGTAATGTTT+TGG | 0.270778 | 3.1:-64736408 | MS.gene79679:CDS |
| CAGTCCCTTGTGCCCATTGC+TGG | 0.272292 | 3.1:+64735248 | None:intergenic |
| GAAACGCCTCTATCTTCTTT+TGG | 0.274448 | 3.1:-64737734 | MS.gene79679:CDS |
| TTGAAGAATATGGAGAAAAT+TGG | 0.278554 | 3.1:+64737515 | None:intergenic |
| TTCTCATCATTATTGCTGTT+GGG | 0.280715 | 3.1:+64737668 | None:intergenic |
| GTTTCCAGAGGCGAAGTTAT+TGG | 0.289983 | 3.1:-64743246 | MS.gene79679:CDS |
| CAACCATATGATGGATATAA+TGG | 0.292630 | 3.1:-64741872 | MS.gene79679:CDS |
| TCTACCTGGGCTTGTATGTT+TGG | 0.292828 | 3.1:-64736587 | MS.gene79679:CDS |
| GTGCATTACTTCAGGAAATA+AGG | 0.299775 | 3.1:-64736480 | MS.gene79679:CDS |
| CCATTTGGATCTTGTGAACT+TGG | 0.310113 | 3.1:+64735294 | None:intergenic |
| GAGGCTCCGTCCCATCTTCT+TGG | 0.324091 | 3.1:-64736515 | MS.gene79679:CDS |
| TCAAGCTCAGAAGAATCTTT+AGG | 0.325777 | 3.1:+64735156 | None:intergenic |
| GGCAATACAAGCTAATGATA+TGG | 0.326426 | 3.1:-64734556 | MS.gene79679:CDS |
| CTAGGAGAGCATCTATAATA+TGG | 0.330922 | 3.1:+64736237 | None:intergenic |
| TGCATCTTCATCTCGTTCAT+TGG | 0.331556 | 3.1:+64736127 | None:intergenic |
| AGTTCCTGCTGAAATAATTC+AGG | 0.333245 | 3.1:-64736555 | MS.gene79679:CDS |
| ATAACAGTTCTTCTGGACTA+TGG | 0.334037 | 3.1:+64736372 | None:intergenic |
| CACAACTGAGAATGGGGTTC+AGG | 0.337492 | 3.1:+64736036 | None:intergenic |
| GCATCTATTGCGGCCAGCAA+TGG | 0.343835 | 3.1:-64735261 | MS.gene79679:CDS |
| CTTCATTGGGCTGCACGGTT+TGG | 0.345093 | 3.1:-64735972 | MS.gene79679:CDS |
| ACAAGTAATAACAGTTCTTC+TGG | 0.345367 | 3.1:+64736365 | None:intergenic |
| CCTCTCTGCTTCGATTATAA+AGG | 0.347695 | 3.1:-64736324 | MS.gene79679:CDS |
| AACTTAATTGTTCCTCCAAT+TGG | 0.352792 | 3.1:+64741981 | None:intergenic |
| GCCTCCCCTCGGATTCTACC+TGG | 0.353045 | 3.1:-64736601 | MS.gene79679:CDS |
| GTTGGGGTGTATCCGGTAAC+TGG | 0.354213 | 3.1:+64737685 | None:intergenic |
| CGCACAAGCTCTGCGCCAAT+TGG | 0.355249 | 3.1:-64741996 | MS.gene79679:CDS |
| TCCTTGTATGCGTGTTGTTT+TGG | 0.357909 | 3.1:+64738160 | None:intergenic |
| GGGAAAATCGGTGAACTTGC+AGG | 0.359647 | 3.1:+64744196 | None:intergenic |
| TATGGTTGTTTATGATCATC+TGG | 0.363053 | 3.1:+64741887 | None:intergenic |
| TTCACATGAATCACCAACTA+TGG | 0.363538 | 3.1:+64742111 | None:intergenic |
| CATCTATTGCGGCCAGCAAT+GGG | 0.366299 | 3.1:-64735260 | MS.gene79679:CDS |
| GTTCTCATCATTATTGCTGT+TGG | 0.366506 | 3.1:+64737667 | None:intergenic |
| CTCCAGTCCTGGGTTCTTAG+AGG | 0.368654 | 3.1:-64742074 | MS.gene79679:CDS |
| ATTGCTGCTGGTGCATCTGC+TGG | 0.368996 | 3.1:-64735330 | MS.gene79679:CDS |
| GATATGGGCAGTTGGAATCT+TGG | 0.378012 | 3.1:-64734540 | MS.gene79679:CDS |
| GTGGCATTGGTGGATATGTT+AGG | 0.378824 | 3.1:-64734924 | MS.gene79679:CDS |
| ATGATTTATATCAATTTCCT+TGG | 0.379049 | 3.1:-64733829 | MS.gene79679:CDS |
| ATGGATGTTGTCTCAGGGTT+TGG | 0.382049 | 3.1:+64742130 | None:intergenic |
| TGTTACCATGAGGCTGGTTA+AGG | 0.382153 | 3.1:+64744174 | None:intergenic |
| GTATCCGGTAACTGGTTTCC+TGG | 0.383094 | 3.1:+64737693 | None:intergenic |
| CTTGACCATGATTGCCCTGC+TGG | 0.384698 | 3.1:-64738250 | MS.gene79679:CDS |
| GTTGCTCTGTGCATTACTTC+AGG | 0.384723 | 3.1:-64736488 | MS.gene79679:CDS |
| GTTCCATTATATCCATCATA+TGG | 0.384932 | 3.1:+64741869 | None:intergenic |
| ATGGATGGACTGCCCTTCAT+TGG | 0.385897 | 3.1:-64735986 | MS.gene79679:CDS |
| CCAACTATGGATGTTGTCTC+AGG | 0.386456 | 3.1:+64742124 | None:intergenic |
| CTTGTTTGCAAATGAGGACT+TGG | 0.388891 | 3.1:+64738186 | None:intergenic |
| TGCTAAGGTGGCGGAGAAAA+CGG | 0.391461 | 3.1:-64734508 | MS.gene79679:CDS |
| GAGGTTCTTGAATTTGGCTT+TGG | 0.394026 | 3.1:+64737446 | None:intergenic |
| CATGTGTAGGTGATCATTGT+TGG | 0.398565 | 3.1:-64736635 | MS.gene79679:intron |
| TCCACCAATGCCACCTAAAC+CGG | 0.398700 | 3.1:+64734933 | None:intergenic |
| GTTAATTTCCGTGATATCAA+TGG | 0.399308 | 3.1:-64736005 | MS.gene79679:CDS |
| AGAAGCGCATGAACGGCTTA+AGG | 0.406373 | 3.1:-64743945 | MS.gene79679:intron |
| GCTTGTATTGCCTCCGAGTC+TGG | 0.406666 | 3.1:+64734567 | None:intergenic |
| TGGTAACTTGTTTGCAAATG+AGG | 0.409912 | 3.1:+64738180 | None:intergenic |
| ATACACATAGTTTCTGGATT+GGG | 0.416266 | 3.1:-64736071 | MS.gene79679:CDS |
| GTGAACCTTTGTTGCCTCAT+TGG | 0.418858 | 3.1:+64737345 | None:intergenic |
| AGAAAGCAGATGATGATTCA+TGG | 0.418980 | 3.1:-64736262 | MS.gene79679:CDS |
| GATGGATATAATGGAACAAA+AGG | 0.419267 | 3.1:-64741863 | MS.gene79679:intron |
| AATCAGAATTTCTCCAGTCC+TGG | 0.422608 | 3.1:-64742085 | MS.gene79679:CDS |
| ATGCGTTTCTTTCGAAAAGA+TGG | 0.423560 | 3.1:-64744007 | MS.gene79679:CDS |
| AAGGATGATAGCTCAGAATC+TGG | 0.430655 | 3.1:-64736305 | MS.gene79679:CDS |
| TATTGCTGTTGGGGTGTATC+CGG | 0.432086 | 3.1:+64737678 | None:intergenic |
| TTACAGGGGACATCCAATTC+TGG | 0.432848 | 3.1:-64742205 | MS.gene79679:intron |
| CAGCATCTCTGTCCAAGATA+AGG | 0.435726 | 3.1:+64738216 | None:intergenic |
| TGGATGGACTGCCCTTCATT+GGG | 0.436126 | 3.1:-64735985 | MS.gene79679:CDS |
| GGACTGGAGAAATTCTGATT+AGG | 0.437165 | 3.1:+64742088 | None:intergenic |
| TGGCAACACGAGTGATGAAA+TGG | 0.437603 | 3.1:-64733918 | MS.gene79679:CDS |
| TGCAGCAATTCAAAAGGCTT+TGG | 0.437608 | 3.1:-64734393 | MS.gene79679:CDS |
| CTGCCCTTCATTGGGCTGCA+CGG | 0.438440 | 3.1:-64735977 | MS.gene79679:CDS |
| CTTATCTTGGACAGAGATGC+TGG | 0.440239 | 3.1:-64738215 | MS.gene79679:CDS |
| CATTGGCATAACAATATTCT+GGG | 0.440294 | 3.1:+64737362 | None:intergenic |
| CAGCAATGGGCACAAGGGAC+TGG | 0.440405 | 3.1:-64735247 | MS.gene79679:CDS |
| GTTGCTTCACTTATTGCTGC+TGG | 0.440412 | 3.1:-64735342 | MS.gene79679:CDS |
| ATTACAGTGAATGCAACTAT+TGG | 0.441063 | 3.1:+64736415 | None:intergenic |
| AAAATGTAAAGCACTTCTAT+AGG | 0.441324 | 3.1:+64744233 | None:intergenic |
| ATTCATGCCACAACTGAGAA+TGG | 0.444168 | 3.1:+64736028 | None:intergenic |
| TCAGGCAGCTGCACGTATAC+AGG | 0.444713 | 3.1:-64735034 | MS.gene79679:CDS |
| CATCAGTATAATCGCATGCT+TGG | 0.446008 | 3.1:-64734332 | MS.gene79679:CDS |
| ATATTTCTTCTGAATTGATA+AGG | 0.446959 | 3.1:+64734876 | None:intergenic |
| ATGAATTTACGTTGCCAACT+AGG | 0.447557 | 3.1:+64736219 | None:intergenic |
| TTCATGCCACAACTGAGAAT+GGG | 0.447886 | 3.1:+64736029 | None:intergenic |
| TCTGGTTCAGCGAATGCAAC+AGG | 0.449281 | 3.1:+64741905 | None:intergenic |
| CCAACCAGGAAACCAGTTAC+CGG | 0.462646 | 3.1:-64737697 | MS.gene79679:CDS |
| CAACTTCTGTGGATGATGCT+TGG | 0.463627 | 3.1:-64733883 | MS.gene79679:CDS |
| TATACACATAGTTTCTGGAT+TGG | 0.464836 | 3.1:-64736072 | MS.gene79679:CDS |
| GTTTGGGCAGGCTCATGTGA+GGG | 0.465902 | 3.1:-64734594 | MS.gene79679:intron |
| CAAACCGTGCAGCCCAATGA+AGG | 0.466086 | 3.1:+64735973 | None:intergenic |
| TTCAGAAGAAATATAGAGGC+TGG | 0.466525 | 3.1:-64734867 | MS.gene79679:CDS |
| AAGAGAAATGATTGCCAACC+AGG | 0.467341 | 3.1:-64737711 | MS.gene79679:CDS |
| GAGCTACGACTCTGACTAAA+CGG | 0.468229 | 3.1:+64742163 | None:intergenic |
| GTGCACATTCTTTCAGAAAA+CGG | 0.468978 | 3.1:-64735002 | MS.gene79679:CDS |
| ATCCTTTCTCTGCCTCCCCT+CGG | 0.469219 | 3.1:-64736612 | MS.gene79679:CDS |
| TGCTGTCAGAAATGCAGCTC+AGG | 0.471697 | 3.1:-64735052 | MS.gene79679:CDS |
| TCTCTTCCAAAAGAAGATAG+AGG | 0.474103 | 3.1:+64737728 | None:intergenic |
| TTCTGGATTGGGTTTCGAGT+GGG | 0.474526 | 3.1:-64736060 | MS.gene79679:CDS |
| GAGCAACCTTTCCAAGAAGA+TGG | 0.475271 | 3.1:+64736504 | None:intergenic |
| ACAACTGAGAATGGGGTTCA+GGG | 0.477876 | 3.1:+64736037 | None:intergenic |
| ATCAGTATAATCGCATGCTT+GGG | 0.478091 | 3.1:-64734331 | MS.gene79679:CDS |
| GCTAAGGTGGCGGAGAAAAC+GGG | 0.481096 | 3.1:-64734507 | MS.gene79679:CDS |
| TCTCATCATTATTGCTGTTG+GGG | 0.481799 | 3.1:+64737669 | None:intergenic |
| TTCAAGAAGCTAAGAAAAGA+TGG | 0.482062 | 3.1:-64744262 | MS.gene79679:CDS |
| GTTACCATGAGGCTGGTTAA+GGG | 0.482952 | 3.1:+64744175 | None:intergenic |
| CTTGGAATATTGATGATGCT+TGG | 0.484389 | 3.1:-64733865 | MS.gene79679:CDS |
| CATGCCCAGCAGGGCAATCA+TGG | 0.486673 | 3.1:+64738245 | None:intergenic |
| GTTGGCAACGTAAATTCATC+TGG | 0.487682 | 3.1:-64736215 | MS.gene79679:CDS |
| AGGCTGGTTAAGGGGAAAAT+CGG | 0.489276 | 3.1:+64744184 | None:intergenic |
| ATTATAGATGCTCTCCTAGT+TGG | 0.490367 | 3.1:-64736233 | MS.gene79679:CDS |
| GCAATACAAGCTAATGATAT+GGG | 0.490598 | 3.1:-64734555 | MS.gene79679:CDS |
| CCGGTAACTGGTTTCCTGGT+TGG | 0.491923 | 3.1:+64737697 | None:intergenic |
| ATCCGAGGGGAGGCAGAGAA+AGG | 0.494394 | 3.1:+64736610 | None:intergenic |
| TGAAGGATAAGCTGCGGCAC+TGG | 0.500111 | 3.1:-64736163 | MS.gene79679:CDS |
| TCAATTCAGAAGAAATATAG+AGG | 0.500680 | 3.1:-64734871 | MS.gene79679:CDS |
| ACATCCAATAACTTCGCCTC+TGG | 0.501649 | 3.1:+64743242 | None:intergenic |
| TTGACCATGATTGCCCTGCT+GGG | 0.501670 | 3.1:-64738249 | MS.gene79679:CDS |
| ACAAGCTCTGCGCCAATTGG+AGG | 0.502276 | 3.1:-64741993 | MS.gene79679:CDS |
| ATCAGAATTTCTCCAGTCCT+GGG | 0.502563 | 3.1:-64742084 | MS.gene79679:CDS |
| AACTCTTTGATTTCACTGCA+TGG | 0.505283 | 3.1:+64736455 | None:intergenic |
| GAAAAGATGGTCATAATTGG+CGG | 0.506642 | 3.1:-64743994 | MS.gene79679:CDS |
| TAGTGAATCCTCATCATCAC+TGG | 0.508175 | 3.1:+64735089 | None:intergenic |
| ATTTCATGCTCATTATAAAA+GGG | 0.509625 | 3.1:+64741929 | None:intergenic |
| CCATCCTGAATTATTTCAGC+AGG | 0.510184 | 3.1:+64736551 | None:intergenic |
| AGTACATGCAGCAATTCAAA+AGG | 0.511198 | 3.1:-64734399 | MS.gene79679:CDS |
| ACCGGTTTAGGTGGCATTGG+TGG | 0.512373 | 3.1:-64734934 | MS.gene79679:CDS |
| TCCATTTAGACAAGTGGTGG+AGG | 0.513397 | 3.1:+64734963 | None:intergenic |
| TTGTGTGACAGGACCAGAAT+TGG | 0.513446 | 3.1:+64742192 | None:intergenic |
| TTTGGCACGGGTGATTTCCA+TGG | 0.514213 | 3.1:-64734375 | MS.gene79679:CDS |
| AATGGGCACAAGGGACTGGC+AGG | 0.514534 | 3.1:-64735243 | MS.gene79679:CDS |
| GATCATAAACAACCATATGA+TGG | 0.514783 | 3.1:-64741881 | MS.gene79679:CDS |
| TGATTTATATCAATTTCCTT+GGG | 0.515469 | 3.1:-64733828 | MS.gene79679:CDS |
| TAACAGTTCTTCTGGACTAT+GGG | 0.516224 | 3.1:+64736373 | None:intergenic |
| AATTCAAAAGGCTTTGGCAC+GGG | 0.518782 | 3.1:-64734387 | MS.gene79679:CDS |
| GGAACAATTAAGTTTGAATG+AGG | 0.519133 | 3.1:-64741972 | MS.gene79679:CDS |
| AAGCTAATGATATGGGCAGT+TGG | 0.520016 | 3.1:-64734548 | MS.gene79679:CDS |
| GTCACCGGTTTAGGTGGCAT+TGG | 0.523450 | 3.1:-64734937 | MS.gene79679:CDS |
| TCCGTCCCATCTTCTTGGAA+AGG | 0.524865 | 3.1:-64736510 | MS.gene79679:CDS |
| CTGAACCCCATTCTCAGTTG+TGG | 0.525541 | 3.1:-64736035 | MS.gene79679:CDS |
| ATTGGGCTGCACGGTTTGGA+AGG | 0.532088 | 3.1:-64735968 | MS.gene79679:intron |
| GACCTCTAAGAACCCAGGAC+TGG | 0.539550 | 3.1:+64742072 | None:intergenic |
| AAGCCAAATTCAAGAACCTC+GGG | 0.541578 | 3.1:-64737443 | MS.gene79679:CDS |
| ACCAAAACAACACGCATACA+AGG | 0.542431 | 3.1:-64738161 | MS.gene79679:CDS |
| CCAAGTTCACAAGATCCAAA+TGG | 0.543852 | 3.1:-64735294 | MS.gene79679:CDS |
| AACGGTGATGATTGTGTGAC+AGG | 0.544242 | 3.1:+64742181 | None:intergenic |
| TTTGGGCAGGCTCATGTGAG+GGG | 0.545911 | 3.1:-64734593 | MS.gene79679:intron |
| CTGTTTCAGAAGCGCATGAA+CGG | 0.548045 | 3.1:-64743952 | MS.gene79679:CDS |
| CCTCCCCTCGGATTCTACCT+GGG | 0.548614 | 3.1:-64736600 | MS.gene79679:CDS |
| TGTCTAAATGGATATGTCAC+CGG | 0.549024 | 3.1:-64734952 | MS.gene79679:CDS |
| AGTCATCATGAATAATGAAA+CGG | 0.549592 | 3.1:-64742038 | MS.gene79679:CDS |
| TGCATCTGCTGGAGCAGTGA+CGG | 0.550109 | 3.1:-64735319 | MS.gene79679:CDS |
| TGATGACGAGCATGCACAGA+AGG | 0.550115 | 3.1:+64734350 | None:intergenic |
| GGATTCACTAAGAAATACCT+TGG | 0.550666 | 3.1:-64735076 | MS.gene79679:CDS |
| TAAGAATGTTACCATGAGGC+TGG | 0.551040 | 3.1:+64744168 | None:intergenic |
| TGCGGCCAGCAATGGGCACA+AGG | 0.551436 | 3.1:-64735253 | MS.gene79679:CDS |
| TTACTTCCTCAAGACACTGG+TGG | 0.551472 | 3.1:-64737541 | MS.gene79679:CDS |
| TGTTTGGGCAGGCTCATGTG+AGG | 0.551502 | 3.1:-64734595 | MS.gene79679:intron |
| TGCATTTCTGACAGCACCCA+AGG | 0.555782 | 3.1:+64735059 | None:intergenic |
| AACTTCGCCTCTGGAAACTA+CGG | 0.556762 | 3.1:+64743251 | None:intergenic |
| TTTCCCCTTAACCAGCCTCA+TGG | 0.561765 | 3.1:-64744179 | MS.gene79679:intron |
| GGATATGTCACCGGTTTAGG+TGG | 0.565101 | 3.1:-64734943 | MS.gene79679:CDS |
| CCTGAGACAACATCCATAGT+TGG | 0.569426 | 3.1:-64742124 | MS.gene79679:CDS |
| CAATTCAAAAGGCTTTGGCA+CGG | 0.569867 | 3.1:-64734388 | MS.gene79679:CDS |
| CTAAACTGCTACTATGCACA+TGG | 0.570887 | 3.1:-64743283 | MS.gene79679:CDS |
| CAGTCCATCCATTGATATCA+CGG | 0.574632 | 3.1:+64735997 | None:intergenic |
| ATGTGAGGGGTTACCAGACT+CGG | 0.574934 | 3.1:-64734580 | MS.gene79679:CDS |
| GCATATTCAAGCTTGACTGT+TGG | 0.580162 | 3.1:-64737418 | MS.gene79679:CDS |
| TTTCTGGATTGGGTTTCGAG+TGG | 0.582020 | 3.1:-64736061 | MS.gene79679:CDS |
| AGCAACCTTTCCAAGAAGAT+GGG | 0.582697 | 3.1:+64736505 | None:intergenic |
| AGAATATTGTTATGCCAATG+AGG | 0.584614 | 3.1:-64737359 | MS.gene79679:CDS |
| AATGAACGAGATGAAGATGC+AGG | 0.584800 | 3.1:-64736125 | MS.gene79679:CDS |
| TCTTTGTCCAAGAAAGAGCA+AGG | 0.586979 | 3.1:-64736098 | MS.gene79679:CDS |
| TGGACAAGGTTGTGCTAAGG+TGG | 0.588436 | 3.1:-64734520 | MS.gene79679:CDS |
| TTACCATGAGGCTGGTTAAG+GGG | 0.590627 | 3.1:+64744176 | None:intergenic |
| CTTTGTCCAAGAAAGAGCAA+GGG | 0.591267 | 3.1:-64736097 | MS.gene79679:CDS |
| TCTTGAAGCCAGTGATGATG+AGG | 0.591725 | 3.1:-64735097 | MS.gene79679:CDS |
| TGGGATGCGTCGTCGAGCCG+AGG | 0.592717 | 3.1:-64734312 | MS.gene79679:intron |
| TCTTCTTCAAGAGCTGCTGA+AGG | 0.595191 | 3.1:-64736180 | MS.gene79679:CDS |
| ACCTTTCCAAGAAGATGGGA+CGG | 0.596282 | 3.1:+64736509 | None:intergenic |
| AAAGCCAAATTCAAGAACCT+CGG | 0.596609 | 3.1:-64737444 | MS.gene79679:CDS |
| AACACGGTTATCAACTTCTG+TGG | 0.597925 | 3.1:-64733894 | MS.gene79679:CDS |
| TTATGCCAATGAGGCAACAA+AGG | 0.601144 | 3.1:-64737350 | MS.gene79679:intron |
| GATTCACTAAGAAATACCTT+GGG | 0.601371 | 3.1:-64735075 | MS.gene79679:CDS |
| AAACCGTGCAGCCCAATGAA+GGG | 0.601471 | 3.1:+64735974 | None:intergenic |
| GACATATCCATTTAGACAAG+TGG | 0.602811 | 3.1:+64734957 | None:intergenic |
| TCATCTGTCATCCCTCACAT+TGG | 0.603114 | 3.1:-64735193 | MS.gene79679:CDS |
| CAACTATGGATGTTGTCTCA+GGG | 0.603209 | 3.1:+64742125 | None:intergenic |
| ATTTCCGTGATATCAATGGA+TGG | 0.609222 | 3.1:-64736001 | MS.gene79679:CDS |
| CCCAGGTAGAATCCGAGGGG+AGG | 0.609248 | 3.1:+64736600 | None:intergenic |
| ACAAGGTTGTGCTAAGGTGG+CGG | 0.609415 | 3.1:-64734517 | MS.gene79679:CDS |
| GTCACCAAACATACAAGCCC+AGG | 0.609877 | 3.1:+64736583 | None:intergenic |
| TGGACTCCACCAGTGTCTTG+AGG | 0.610261 | 3.1:+64737535 | None:intergenic |
| TAAAACTGCTGCATCTATTG+CGG | 0.610279 | 3.1:-64735271 | MS.gene79679:CDS |
| ACAAGCCCAGGTAGAATCCG+AGG | 0.613314 | 3.1:+64736595 | None:intergenic |
| ATATCCATTTAGACAAGTGG+TGG | 0.614907 | 3.1:+64734960 | None:intergenic |
| ACATTCTTTCAGAAAACGGA+TGG | 0.616326 | 3.1:-64734998 | MS.gene79679:CDS |
| TCATGCTCATTATAAAAGGG+TGG | 0.618544 | 3.1:+64741932 | None:intergenic |
| ATTCTCTTACAGGCTGAACA+TGG | 0.626364 | 3.1:-64733938 | MS.gene79679:intron |
| TCTTGGACAAGGTTGTGCTA+AGG | 0.628079 | 3.1:-64734523 | MS.gene79679:CDS |
| GAAGGCTAGAGCGCTTCCCA+AGG | 0.628496 | 3.1:+64733812 | None:intergenic |
| CAAGCCCAGGTAGAATCCGA+GGG | 0.628679 | 3.1:+64736596 | None:intergenic |
| AGCATGCACAGAAGGGACCA+TGG | 0.630235 | 3.1:+64734358 | None:intergenic |
| TATTCTTCAATAGAAACTCA+AGG | 0.630493 | 3.1:-64737502 | MS.gene79679:CDS |
| GGCAGTTGGAATCTTGGACA+AGG | 0.634216 | 3.1:-64734534 | MS.gene79679:CDS |
| TCATGCCACAACTGAGAATG+GGG | 0.637586 | 3.1:+64736030 | None:intergenic |
| GCGGCCAGCAATGGGCACAA+GGG | 0.639651 | 3.1:-64735252 | MS.gene79679:CDS |
| GGATGGCGTAATCTGTTGTG+AGG | 0.646267 | 3.1:-64736534 | MS.gene79679:CDS |
| CGAGTGATGAAATGGAAACA+CGG | 0.646958 | 3.1:-64733910 | MS.gene79679:CDS |
| CTGCTACTATGCACATGGAG+AGG | 0.651839 | 3.1:-64743278 | MS.gene79679:CDS |
| AGGAGAACCGTAGTTTCCAG+AGG | 0.651888 | 3.1:-64743258 | MS.gene79679:CDS |
| AGCTGCTGAAGGATAAGCTG+CGG | 0.660445 | 3.1:-64736169 | MS.gene79679:CDS |
| GATGACGAGCATGCACAGAA+GGG | 0.661662 | 3.1:+64734351 | None:intergenic |
| ATTCATGATGACTATATCCG+AGG | 0.671055 | 3.1:+64742048 | None:intergenic |
| AAGCTTGAATATGCATCCCG+AGG | 0.674899 | 3.1:+64737427 | None:intergenic |
| GAGGTGACCTCTAAGAACCC+AGG | 0.676062 | 3.1:+64742067 | None:intergenic |
| CCTGCTGAAATAATTCAGGA+TGG | 0.681187 | 3.1:-64736551 | MS.gene79679:CDS |
| CCTTTATAATCGAAGCAGAG+AGG | 0.688981 | 3.1:+64736324 | None:intergenic |
| GCATTACAGAGAAACAAATG+AGG | 0.696255 | 3.1:-64742853 | MS.gene79679:intron |
| AGGTGGCGGAGAAAACGGGT+TGG | 0.696971 | 3.1:-64734503 | MS.gene79679:CDS |
| TGGGTTCTTAGAGGTCACCT+CGG | 0.705452 | 3.1:-64742065 | MS.gene79679:CDS |
| GATGATAGCTCAGAATCTGG+AGG | 0.706195 | 3.1:-64736302 | MS.gene79679:CDS |
| ATTGGCATAACAATATTCTG+GGG | 0.709888 | 3.1:+64737363 | None:intergenic |
| TGAGGGGTTACCAGACTCGG+AGG | 0.712583 | 3.1:-64734577 | MS.gene79679:CDS |
| AAGCCCAGGTAGAATCCGAG+GGG | 0.750615 | 3.1:+64736597 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 64733817 | 64744311 | 64733817 | ID=MS.gene79679 |
| chr3.1 | mRNA | 64733817 | 64744311 | 64733817 | ID=MS.gene79679.t1;Parent=MS.gene79679 |
| chr3.1 | exon | 64744180 | 64744311 | 64744180 | ID=MS.gene79679.t1.exon1;Parent=MS.gene79679.t1 |
| chr3.1 | CDS | 64744180 | 64744311 | 64744180 | ID=cds.MS.gene79679.t1;Parent=MS.gene79679.t1 |
| chr3.1 | exon | 64743946 | 64744061 | 64743946 | ID=MS.gene79679.t1.exon2;Parent=MS.gene79679.t1 |
| chr3.1 | CDS | 64743946 | 64744061 | 64743946 | ID=cds.MS.gene79679.t1;Parent=MS.gene79679.t1 |
| chr3.1 | exon | 64743235 | 64743323 | 64743235 | ID=MS.gene79679.t1.exon3;Parent=MS.gene79679.t1 |
| chr3.1 | CDS | 64743235 | 64743323 | 64743235 | ID=cds.MS.gene79679.t1;Parent=MS.gene79679.t1 |
| chr3.1 | exon | 64742854 | 64742899 | 64742854 | ID=MS.gene79679.t1.exon4;Parent=MS.gene79679.t1 |
| chr3.1 | CDS | 64742854 | 64742899 | 64742854 | ID=cds.MS.gene79679.t1;Parent=MS.gene79679.t1 |
| chr3.1 | exon | 64741864 | 64742221 | 64741864 | ID=MS.gene79679.t1.exon5;Parent=MS.gene79679.t1 |
| chr3.1 | CDS | 64741864 | 64742221 | 64741864 | ID=cds.MS.gene79679.t1;Parent=MS.gene79679.t1 |
| chr3.1 | exon | 64738150 | 64738301 | 64738150 | ID=MS.gene79679.t1.exon6;Parent=MS.gene79679.t1 |
| chr3.1 | CDS | 64738150 | 64738301 | 64738150 | ID=cds.MS.gene79679.t1;Parent=MS.gene79679.t1 |
| chr3.1 | exon | 64737666 | 64737756 | 64737666 | ID=MS.gene79679.t1.exon7;Parent=MS.gene79679.t1 |
| chr3.1 | CDS | 64737666 | 64737756 | 64737666 | ID=cds.MS.gene79679.t1;Parent=MS.gene79679.t1 |
| chr3.1 | exon | 64737351 | 64737571 | 64737351 | ID=MS.gene79679.t1.exon8;Parent=MS.gene79679.t1 |
| chr3.1 | CDS | 64737351 | 64737571 | 64737351 | ID=cds.MS.gene79679.t1;Parent=MS.gene79679.t1 |
| chr3.1 | exon | 64735969 | 64736648 | 64735969 | ID=MS.gene79679.t1.exon9;Parent=MS.gene79679.t1 |
| chr3.1 | CDS | 64735969 | 64736648 | 64735969 | ID=cds.MS.gene79679.t1;Parent=MS.gene79679.t1 |
| chr3.1 | exon | 64734816 | 64735374 | 64734816 | ID=MS.gene79679.t1.exon10;Parent=MS.gene79679.t1 |
| chr3.1 | CDS | 64734816 | 64735374 | 64734816 | ID=cds.MS.gene79679.t1;Parent=MS.gene79679.t1 |
| chr3.1 | exon | 64734313 | 64734606 | 64734313 | ID=MS.gene79679.t1.exon11;Parent=MS.gene79679.t1 |
| chr3.1 | CDS | 64734313 | 64734606 | 64734313 | ID=cds.MS.gene79679.t1;Parent=MS.gene79679.t1 |
| chr3.1 | exon | 64733817 | 64733948 | 64733817 | ID=MS.gene79679.t1.exon12;Parent=MS.gene79679.t1 |
| chr3.1 | CDS | 64733817 | 64733948 | 64733817 | ID=cds.MS.gene79679.t1;Parent=MS.gene79679.t1 |
| Gene Sequence |
| Protein sequence |
