Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79696.t1 | XP_013444755.1 | 90.6 | 267 | 23 | 1 | 1 | 265 | 1 | 267 | 2.70E-126 | 461.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79696.t1 | Q9SUR3 | 59.7 | 253 | 91 | 2 | 18 | 263 | 24 | 272 | 7.6e-77 | 288.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79696.t1 | I3S2R5 | 90.6 | 267 | 23 | 1 | 1 | 265 | 1 | 267 | 2.0e-126 | 461.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051963 | MS.gene79696 | 0.800283 | 1.55E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79696.t1 | MTR_8g028450 | 96.629 | 267 | 7 | 1 | 1 | 265 | 1 | 267 | 0.0 | 511 |
| MS.gene79696.t1 | MTR_8g099060 | 65.038 | 266 | 81 | 3 | 1 | 263 | 1 | 257 | 2.74e-112 | 324 |
| MS.gene79696.t1 | MTR_1g099500 | 57.627 | 236 | 98 | 1 | 18 | 251 | 7 | 242 | 3.07e-93 | 275 |
| MS.gene79696.t1 | MTR_3g449880 | 44.000 | 225 | 124 | 1 | 22 | 244 | 3 | 227 | 4.35e-63 | 198 |
| MS.gene79696.t1 | MTR_5g090340 | 44.286 | 210 | 111 | 2 | 51 | 258 | 81 | 286 | 1.12e-55 | 181 |
| MS.gene79696.t1 | MTR_5g090340 | 44.286 | 210 | 111 | 2 | 51 | 258 | 78 | 283 | 1.24e-55 | 181 |
| MS.gene79696.t1 | MTR_3g449880 | 43.787 | 169 | 95 | 0 | 76 | 244 | 37 | 205 | 9.69e-48 | 158 |
| MS.gene79696.t1 | MTR_1g109630 | 37.255 | 204 | 118 | 3 | 60 | 263 | 10 | 203 | 1.32e-43 | 147 |
| MS.gene79696.t1 | MTR_3g062910 | 35.652 | 230 | 133 | 2 | 28 | 250 | 16 | 237 | 7.03e-41 | 141 |
| MS.gene79696.t1 | MTR_4g014700 | 34.715 | 193 | 126 | 0 | 59 | 251 | 6 | 198 | 3.14e-33 | 120 |
| MS.gene79696.t1 | MTR_5g018250 | 35.870 | 184 | 118 | 0 | 72 | 255 | 29 | 212 | 6.33e-30 | 112 |
| MS.gene79696.t1 | MTR_6g012460 | 35.912 | 181 | 116 | 0 | 77 | 257 | 14 | 194 | 2.24e-28 | 107 |
| MS.gene79696.t1 | MTR_1g107445 | 34.555 | 191 | 125 | 0 | 67 | 257 | 9 | 199 | 1.47e-22 | 92.4 |
| MS.gene79696.t1 | MTR_5g018190 | 33.333 | 150 | 100 | 0 | 81 | 230 | 285 | 434 | 3.82e-19 | 86.7 |
| MS.gene79696.t1 | MTR_5g018110 | 37.778 | 135 | 84 | 0 | 81 | 215 | 346 | 480 | 5.67e-19 | 86.3 |
| MS.gene79696.t1 | MTR_5g018080 | 35.556 | 135 | 87 | 0 | 81 | 215 | 20 | 154 | 1.98e-18 | 80.5 |
| MS.gene79696.t1 | MTR_6g012460 | 37.692 | 130 | 81 | 0 | 77 | 206 | 14 | 143 | 5.80e-17 | 77.8 |
| MS.gene79696.t1 | MTR_3g105440 | 33.333 | 177 | 96 | 5 | 63 | 226 | 368 | 535 | 5.45e-13 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79696.t1 | AT2G46170 | 60.456 | 263 | 92 | 3 | 1 | 263 | 1 | 251 | 6.88e-108 | 312 |
| MS.gene79696.t1 | AT4G23630 | 71.498 | 207 | 55 | 1 | 57 | 263 | 70 | 272 | 1.19e-107 | 313 |
| MS.gene79696.t1 | AT4G23630 | 71.498 | 207 | 55 | 1 | 57 | 263 | 70 | 272 | 1.19e-107 | 313 |
| MS.gene79696.t1 | AT5G41600 | 62.302 | 252 | 94 | 1 | 13 | 263 | 4 | 255 | 8.97e-105 | 305 |
| MS.gene79696.t1 | AT4G11220 | 58.456 | 272 | 100 | 3 | 1 | 263 | 1 | 268 | 6.53e-103 | 300 |
| MS.gene79696.t1 | AT1G64090 | 63.485 | 241 | 85 | 1 | 18 | 258 | 9 | 246 | 9.73e-103 | 300 |
| MS.gene79696.t1 | AT3G61560 | 59.623 | 265 | 95 | 3 | 1 | 265 | 1 | 253 | 4.59e-101 | 295 |
| MS.gene79696.t1 | AT3G61560 | 59.623 | 265 | 95 | 3 | 1 | 265 | 1 | 253 | 4.59e-101 | 295 |
| MS.gene79696.t1 | AT1G64090 | 59.144 | 257 | 86 | 2 | 18 | 258 | 9 | 262 | 1.41e-97 | 287 |
| MS.gene79696.t1 | AT3G61560 | 59.903 | 207 | 75 | 2 | 1 | 207 | 1 | 199 | 1.20e-77 | 234 |
| MS.gene79696.t1 | AT2G46170 | 58.378 | 185 | 69 | 2 | 1 | 185 | 1 | 177 | 3.04e-69 | 212 |
| MS.gene79696.t1 | AT4G01230 | 50.754 | 199 | 95 | 1 | 53 | 251 | 47 | 242 | 1.22e-66 | 207 |
| MS.gene79696.t1 | AT4G01230 | 49.246 | 199 | 96 | 2 | 53 | 251 | 47 | 240 | 3.77e-62 | 196 |
| MS.gene79696.t1 | AT3G10260 | 42.786 | 201 | 115 | 0 | 51 | 251 | 36 | 236 | 4.91e-60 | 191 |
| MS.gene79696.t1 | AT3G10260 | 42.786 | 201 | 115 | 0 | 51 | 251 | 36 | 236 | 4.91e-60 | 191 |
| MS.gene79696.t1 | AT3G10260 | 42.786 | 201 | 115 | 0 | 51 | 251 | 56 | 256 | 7.34e-60 | 191 |
| MS.gene79696.t1 | AT3G18260 | 36.957 | 230 | 131 | 2 | 34 | 263 | 7 | 222 | 1.92e-50 | 165 |
| MS.gene79696.t1 | AT3G10915 | 32.420 | 219 | 144 | 2 | 33 | 251 | 2 | 216 | 1.50e-37 | 132 |
| MS.gene79696.t1 | AT2G15280 | 34.536 | 194 | 121 | 2 | 64 | 254 | 2 | 192 | 7.67e-37 | 129 |
| MS.gene79696.t1 | AT3G10915 | 32.474 | 194 | 131 | 0 | 58 | 251 | 48 | 241 | 4.14e-36 | 129 |
| MS.gene79696.t1 | AT3G10915 | 32.273 | 220 | 144 | 3 | 33 | 251 | 2 | 217 | 7.49e-36 | 127 |
| MS.gene79696.t1 | AT1G68230 | 37.436 | 195 | 112 | 3 | 71 | 263 | 26 | 212 | 2.65e-33 | 120 |
| MS.gene79696.t1 | AT3G10915 | 29.032 | 248 | 149 | 4 | 33 | 257 | 2 | 245 | 3.29e-30 | 114 |
| MS.gene79696.t1 | AT3G19460 | 35.220 | 159 | 103 | 0 | 68 | 226 | 14 | 172 | 9.14e-29 | 108 |
| MS.gene79696.t1 | AT3G19460 | 35.220 | 159 | 103 | 0 | 68 | 226 | 14 | 172 | 9.14e-29 | 108 |
| MS.gene79696.t1 | AT3G19460 | 35.220 | 159 | 103 | 0 | 68 | 226 | 14 | 172 | 9.14e-29 | 108 |
| MS.gene79696.t1 | AT3G10915 | 30.114 | 176 | 123 | 0 | 76 | 251 | 9 | 184 | 2.69e-27 | 104 |
| MS.gene79696.t1 | AT3G10915 | 30.114 | 176 | 123 | 0 | 76 | 251 | 8 | 183 | 5.50e-27 | 103 |
| MS.gene79696.t1 | AT3G54120 | 35.329 | 167 | 108 | 0 | 59 | 225 | 7 | 173 | 2.93e-24 | 97.1 |
| MS.gene79696.t1 | AT3G19460 | 29.534 | 193 | 102 | 1 | 68 | 226 | 14 | 206 | 2.79e-22 | 92.4 |
| MS.gene79696.t1 | AT3G19460 | 29.534 | 193 | 102 | 1 | 68 | 226 | 14 | 206 | 2.79e-22 | 92.4 |
| MS.gene79696.t1 | AT1G68230 | 38.406 | 138 | 79 | 2 | 71 | 206 | 26 | 159 | 2.80e-21 | 88.2 |
| MS.gene79696.t1 | AT2G23640 | 26.316 | 171 | 126 | 0 | 78 | 248 | 18 | 188 | 2.12e-19 | 84.0 |
| MS.gene79696.t1 | AT3G19460 | 28.804 | 184 | 97 | 1 | 77 | 226 | 7 | 190 | 6.73e-19 | 83.2 |
| MS.gene79696.t1 | AT3G19460 | 28.804 | 184 | 97 | 1 | 77 | 226 | 7 | 190 | 6.73e-19 | 83.2 |
| MS.gene79696.t1 | AT3G10915 | 31.373 | 153 | 101 | 2 | 33 | 185 | 2 | 150 | 6.73e-19 | 81.6 |
| MS.gene79696.t1 | AT2G15280 | 29.915 | 117 | 82 | 0 | 64 | 180 | 2 | 118 | 1.47e-17 | 78.2 |
| MS.gene79696.t1 | AT2G01240 | 31.655 | 139 | 85 | 3 | 121 | 258 | 1 | 130 | 1.70e-11 | 60.8 |
Find 54 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTTGTCACATTTCGATTC+TGG | 0.146999 | 8.4:+67383386 | MS.gene79696:CDS |
| TCGGGACAGCAACTGCTATT+TGG | 0.157804 | 8.4:+67383325 | MS.gene79696:CDS |
| TTTCCTTTCAACACACCTTT+TGG | 0.257041 | 8.4:-67384414 | None:intergenic |
| TTCTGATTCTCATTCTGATT+TGG | 0.273750 | 8.4:+67382392 | MS.gene79696:CDS |
| CGGGACAGCAACTGCTATTT+GGG | 0.323494 | 8.4:+67383326 | MS.gene79696:CDS |
| CAGGCTTCTCCCTTCCAAAA+AGG | 0.354297 | 8.4:-67382458 | None:intergenic |
| TCCTTCACCGATTCAATAAC+CGG | 0.358423 | 8.4:-67382423 | None:intergenic |
| CACCGAGAAGCTTCACTTTG+AGG | 0.367936 | 8.4:+67382353 | MS.gene79696:CDS |
| ATCCTCAAAGTGAAGCTTCT+CGG | 0.394266 | 8.4:-67382355 | None:intergenic |
| TATTCTTACATATGTAGAAC+AGG | 0.397072 | 8.4:-67384166 | None:intergenic |
| GCAGAAGCAATCTGCAGAAA+TGG | 0.411515 | 8.4:-67383615 | None:intergenic |
| TTCTGATTTGGATAAGAAAC+CGG | 0.414962 | 8.4:+67382404 | MS.gene79696:CDS |
| CTGTGGATTCTGTCGATTGT+TGG | 0.422020 | 8.4:+67384122 | MS.gene79696:CDS |
| TCCTCAGGAAGATGAACAAT+TGG | 0.425388 | 8.4:-67383591 | None:intergenic |
| TTCTGTCGATTGTTGGGAGC+TGG | 0.437564 | 8.4:+67384129 | MS.gene79696:CDS |
| TGTGGATTCTGTCGATTGTT+GGG | 0.439036 | 8.4:+67384123 | MS.gene79696:CDS |
| CCGCCGAGGACGGAATGAAC+AGG | 0.440619 | 8.4:-67382477 | None:intergenic |
| ATCTGCAGAAATGGTTCCTC+AGG | 0.452475 | 8.4:-67383606 | None:intergenic |
| GCCTTGCGTGATATTGGTAC+TGG | 0.456671 | 8.4:+67383669 | MS.gene79696:CDS |
| GATAGACCCTCTGGCAGAAA+AGG | 0.457105 | 8.4:+67384320 | MS.gene79696:CDS |
| GTATGCTGTGTTTGACGAAA+AGG | 0.466260 | 8.4:+67384365 | MS.gene79696:CDS |
| GTTCATTCCGTCCTCGGCGG+CGG | 0.476502 | 8.4:+67382480 | MS.gene79696:CDS |
| AAGCCTGTTCATTCCGTCCT+CGG | 0.480171 | 8.4:+67382474 | MS.gene79696:CDS |
| TAAGAAACCGGTTATTGAAT+CGG | 0.485712 | 8.4:+67382416 | MS.gene79696:CDS |
| AAGTTATCTGCTGGTACACT+CGG | 0.490344 | 8.4:+67383306 | MS.gene79696:CDS |
| CAGCTGCTGATGTGTTCTTG+TGG | 0.506480 | 8.4:+67383274 | MS.gene79696:intron |
| ATCTTCAGCAAGATCCCAAA+AGG | 0.519575 | 8.4:+67384399 | MS.gene79696:CDS |
| ATCAGAATGAGAATCAGAAT+CGG | 0.525151 | 8.4:-67382388 | None:intergenic |
| GTGAACAAAGGCATGAGCAT+TGG | 0.527273 | 8.4:-67383433 | None:intergenic |
| ATCCCAAAAGGTGTGTTGAA+AGG | 0.543000 | 8.4:+67384411 | MS.gene79696:CDS |
| TATTGAATCGGTGAAGGAGA+AGG | 0.548952 | 8.4:+67382428 | MS.gene79696:CDS |
| ACGCTTTCCGCCGCCGAGGA+CGG | 0.555526 | 8.4:-67382487 | None:intergenic |
| CACGCAAGGCAGAAAATCCT+CGG | 0.571310 | 8.4:-67383656 | None:intergenic |
| TCCAGTACCAATATCACGCA+AGG | 0.574766 | 8.4:-67383670 | None:intergenic |
| GGAGAAAAGCACCGTGACGG+TGG | 0.582541 | 8.4:+67382296 | MS.gene79696:CDS |
| TCCAATTGTTCATCTTCCTG+AGG | 0.588534 | 8.4:+67383590 | MS.gene79696:CDS |
| AAGAACAAGAAGTTATCTGC+TGG | 0.588642 | 8.4:+67383297 | MS.gene79696:CDS |
| CGAGGACAAGATAGACCCTC+TGG | 0.598470 | 8.4:+67384311 | MS.gene79696:CDS |
| ACCGGTTATTGAATCGGTGA+AGG | 0.598940 | 8.4:+67382422 | MS.gene79696:CDS |
| GCCGTCACGATCCACCGTCA+CGG | 0.610496 | 8.4:-67382307 | None:intergenic |
| CAACAATCGACAGAATCCAC+AGG | 0.623018 | 8.4:-67384121 | None:intergenic |
| ATCGGAGAAAAGCACCGTGA+CGG | 0.632245 | 8.4:+67382293 | MS.gene79696:CDS |
| AGTTATCTGCTGGTACACTC+GGG | 0.638812 | 8.4:+67383307 | MS.gene79696:CDS |
| AGAGTCTTACTTGTGAACAA+AGG | 0.647132 | 8.4:-67383445 | None:intergenic |
| TGAACAATTGGAATGTGAGG+TGG | 0.647379 | 8.4:-67383579 | None:intergenic |
| TCGTACTTGTCATACACGAA+AGG | 0.653781 | 8.4:-67384291 | None:intergenic |
| ATTCTTACATATGTAGAACA+GGG | 0.654822 | 8.4:-67384165 | None:intergenic |
| TTGAGAATTGAAATCAACCG+AGG | 0.656314 | 8.4:+67383639 | MS.gene79696:CDS |
| ACCGTGACGGTGGATCGTGA+CGG | 0.663353 | 8.4:+67382306 | MS.gene79696:CDS |
| GTGACGGTGGATCGTGACGG+CGG | 0.663536 | 8.4:+67382309 | MS.gene79696:CDS |
| AGATGAACAATTGGAATGTG+AGG | 0.665708 | 8.4:-67383582 | None:intergenic |
| CCTGTTCATTCCGTCCTCGG+CGG | 0.678189 | 8.4:+67382477 | MS.gene79696:CDS |
| TCATACGCTTTCCGCCGCCG+AGG | 0.684893 | 8.4:-67382491 | None:intergenic |
| TTTCGTGTATGACAAGTACG+AGG | 0.772122 | 8.4:+67384293 | MS.gene79696:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTTAAGTAATTATAGT+TGG | - | chr8.4:67383844-67383863 | None:intergenic | 10.0% |
| !! | AAAAAAATATCTATGAATCA+TGG | + | chr8.4:67382911-67382930 | MS.gene79696:intron | 15.0% |
| !!! | AATATTTTGTAATGTTTTGT+AGG | + | chr8.4:67383553-67383572 | MS.gene79696:intron | 15.0% |
| !!! | TTCATAGATATTTTTTTTTG+AGG | - | chr8.4:67382908-67382927 | None:intergenic | 15.0% |
| !! | GACTAGGTAAAAAAAATAAT+TGG | - | chr8.4:67382937-67382956 | None:intergenic | 20.0% |
| !! | TAAATTGTATCTACGAAATT+TGG | + | chr8.4:67383011-67383030 | MS.gene79696:intron | 20.0% |
| !! | TTATGTAAGATGTAAAAACA+TGG | + | chr8.4:67383084-67383103 | MS.gene79696:intron | 20.0% |
| !!! | AACAAGAAAAAATATTGACT+AGG | - | chr8.4:67382953-67382972 | None:intergenic | 20.0% |
| ! | AACGTATAAATCAGTTTGAT+AGG | - | chr8.4:67384195-67384214 | None:intergenic | 25.0% |
| ! | ATGTGAATGAAAATTGTGAT+TGG | + | chr8.4:67382606-67382625 | MS.gene79696:intron | 25.0% |
| ! | ATTCTTACATATGTAGAACA+GGG | - | chr8.4:67384168-67384187 | None:intergenic | 25.0% |
| ! | TATTCTTACATATGTAGAAC+AGG | - | chr8.4:67384169-67384188 | None:intergenic | 25.0% |
| ! | TGAATTGTATCTATGAATCA+TGG | + | chr8.4:67382756-67382775 | MS.gene79696:intron | 25.0% |
| ! | TGTAAAAACATGGTAATTTG+TGG | + | chr8.4:67383094-67383113 | MS.gene79696:intron | 25.0% |
| ! | TTCATAAGTGAATGAATGAT+GGG | + | chr8.4:67383805-67383824 | MS.gene79696:intron | 25.0% |
| !! | AATTTCATCTCTTCTTTTAG+AGG | - | chr8.4:67383203-67383222 | None:intergenic | 25.0% |
| !! | ATGTTGTGTTAGGTAATTTT+TGG | + | chr8.4:67384098-67384117 | MS.gene79696:intron | 25.0% |
| !! | TCTTTACTGTTTAGTTGTTT+TGG | + | chr8.4:67382525-67382544 | MS.gene79696:intron | 25.0% |
| !! | TTTGTGATCAATTTTTCTAG+TGG | + | chr8.4:67382711-67382730 | MS.gene79696:intron | 25.0% |
| !!! | ATACTGTTTTTTAATCTCGA+TGG | - | chr8.4:67384349-67384368 | None:intergenic | 25.0% |
| !!! | ATTCTGACTTTTTAGTGTTA+TGG | + | chr8.4:67383126-67383145 | MS.gene79696:intron | 25.0% |
| !!! | ATTTGGTTCTCTGTTTTTAT+TGG | + | chr8.4:67383157-67383176 | MS.gene79696:intron | 25.0% |
| ATCAGAATGAGAATCAGAAT+CGG | - | chr8.4:67382391-67382410 | None:intergenic | 30.0% | |
| ATTATTGCGTATTTGTCTGA+TGG | + | chr8.4:67383237-67383256 | MS.gene79696:intron | 30.0% | |
| CTTCATAAGTGAATGAATGA+TGG | + | chr8.4:67383804-67383823 | MS.gene79696:intron | 30.0% | |
| TAAGAAACCGGTTATTGAAT+CGG | + | chr8.4:67382416-67382435 | MS.gene79696:CDS | 30.0% | |
| TCATAAGTGAATGAATGACA+GGG | + | chr8.4:67383930-67383949 | MS.gene79696:intron | 30.0% | |
| TCATAAGTGAATGAATGATG+GGG | + | chr8.4:67383806-67383825 | MS.gene79696:intron | 30.0% | |
| TTATTGCGTATTTGTCTGAT+GGG | + | chr8.4:67383238-67383257 | MS.gene79696:intron | 30.0% | |
| TTCATAAGTGAATGAATGAC+AGG | + | chr8.4:67383929-67383948 | MS.gene79696:intron | 30.0% | |
| TTCTGATTCTCATTCTGATT+TGG | + | chr8.4:67382392-67382411 | MS.gene79696:CDS | 30.0% | |
| ! | TTATTGACTAGAAAGTTCAC+AGG | - | chr8.4:67383728-67383747 | None:intergenic | 30.0% |
| !! | TTCTGATTTGGATAAGAAAC+CGG | + | chr8.4:67382404-67382423 | MS.gene79696:CDS | 30.0% |
| !! | TTTGTTGTTGATGTTGTGTT+AGG | + | chr8.4:67384088-67384107 | MS.gene79696:intron | 30.0% |
| !!! | AGCTTTTGTTTTGTTGTTCA+CGG | + | chr8.4:67384266-67384285 | MS.gene79696:intron | 30.0% |
| !!! | TTCTTGCACTATTGTTTTTG+TGG | + | chr8.4:67383409-67383428 | MS.gene79696:CDS | 30.0% |
| AACAACAAAATCCTTAGCAG+TGG | - | chr8.4:67384077-67384096 | None:intergenic | 35.0% | |
| AAGAACAAGAAGTTATCTGC+TGG | + | chr8.4:67383297-67383316 | MS.gene79696:CDS | 35.0% | |
| AGAGTCTTACTTGTGAACAA+AGG | - | chr8.4:67383448-67383467 | None:intergenic | 35.0% | |
| AGATGAACAATTGGAATGTG+AGG | - | chr8.4:67383585-67383604 | None:intergenic | 35.0% | |
| ATAAGTGAATGAATGACAGG+GGG | + | chr8.4:67383932-67383951 | MS.gene79696:intron | 35.0% | |
| CATAAGTGAATGAATGACAG+GGG | + | chr8.4:67383931-67383950 | MS.gene79696:intron | 35.0% | |
| CATAAGTGAATGAATGATGG+GGG | + | chr8.4:67383807-67383826 | MS.gene79696:intron | 35.0% | |
| CATTTGTCACATTTCGATTC+TGG | + | chr8.4:67383386-67383405 | MS.gene79696:CDS | 35.0% | |
| GGCACTAGTAATCCAAAATT+AGG | - | chr8.4:67382887-67382906 | None:intergenic | 35.0% | |
| GTAATCCAAAATTAGGTCAG+AGG | - | chr8.4:67382880-67382899 | None:intergenic | 35.0% | |
| TATTCATCACATGCAGCAAA+TGG | - | chr8.4:67383527-67383546 | None:intergenic | 35.0% | |
| TTGAGAATTGAAATCAACCG+AGG | + | chr8.4:67383639-67383658 | MS.gene79696:CDS | 35.0% | |
| ! | CTTTACCTCTGACCTAATTT+TGG | + | chr8.4:67382872-67382891 | MS.gene79696:intron | 35.0% |
| ! | TTCCTTTCAACACACCTTTT+GGG | - | chr8.4:67384416-67384435 | None:intergenic | 35.0% |
| ! | TTTCCTTTCAACACACCTTT+TGG | - | chr8.4:67384417-67384436 | None:intergenic | 35.0% |
| !! | GTGTTATGGTTTTGCTGATT+TGG | + | chr8.4:67383140-67383159 | MS.gene79696:intron | 35.0% |
| AAGTTATCTGCTGGTACACT+CGG | + | chr8.4:67383306-67383325 | MS.gene79696:CDS | 40.0% | |
| ATCCTCAAAGTGAAGCTTCT+CGG | - | chr8.4:67382358-67382377 | None:intergenic | 40.0% | |
| ATCTTCAGCAAGATCCCAAA+AGG | + | chr8.4:67384399-67384418 | MS.gene79696:CDS | 40.0% | |
| CATGCAGCAAATGGTTAGAT+AGG | - | chr8.4:67383518-67383537 | None:intergenic | 40.0% | |
| CATGTTATTGACCACTGCTA+AGG | + | chr8.4:67384063-67384082 | MS.gene79696:intron | 40.0% | |
| GCTCTTAATGACTTTGCCAA+AGG | + | chr8.4:67382793-67382812 | MS.gene79696:intron | 40.0% | |
| GTATGCTGTGTTTGACGAAA+AGG | + | chr8.4:67384365-67384384 | MS.gene79696:CDS | 40.0% | |
| TATTGAATCGGTGAAGGAGA+AGG | + | chr8.4:67382428-67382447 | MS.gene79696:CDS | 40.0% | |
| TCCAATTGTTCATCTTCCTG+AGG | + | chr8.4:67383590-67383609 | MS.gene79696:CDS | 40.0% | |
| TCCTCAGGAAGATGAACAAT+TGG | - | chr8.4:67383594-67383613 | None:intergenic | 40.0% | |
| TCGTACTTGTCATACACGAA+AGG | - | chr8.4:67384294-67384313 | None:intergenic | 40.0% | |
| TGAACAATTGGAATGTGAGG+TGG | - | chr8.4:67383582-67383601 | None:intergenic | 40.0% | |
| TGCCAAAGGACGAATTGTTT+GGG | + | chr8.4:67382807-67382826 | MS.gene79696:intron | 40.0% | |
| TTCACAGGTTACGTACAATG+AGG | - | chr8.4:67383713-67383732 | None:intergenic | 40.0% | |
| TTCCCAAACAATTCGTCCTT+TGG | - | chr8.4:67382812-67382831 | None:intergenic | 40.0% | |
| TTCTACACACAAATCGCACT+CGG | - | chr8.4:67382837-67382856 | None:intergenic | 40.0% | |
| TTGCCAAAGGACGAATTGTT+TGG | + | chr8.4:67382806-67382825 | MS.gene79696:intron | 40.0% | |
| TTTCGTGTATGACAAGTACG+AGG | + | chr8.4:67384293-67384312 | MS.gene79696:CDS | 40.0% | |
| ! | AGGTTTTTCGCCTTTTTGGA+AGG | + | chr8.4:67382448-67382467 | MS.gene79696:CDS | 40.0% |
| ! | ATCCCAAAAGGTGTGTTGAA+AGG | + | chr8.4:67384411-67384430 | MS.gene79696:CDS | 40.0% |
| ! | GAGAAGGTTTTTCGCCTTTT+TGG | + | chr8.4:67382444-67382463 | MS.gene79696:CDS | 40.0% |
| ! | TGTGGATTCTGTCGATTGTT+GGG | + | chr8.4:67384123-67384142 | MS.gene79696:CDS | 40.0% |
| ! | TTTTCTGCCTTGCGTGATAT+TGG | + | chr8.4:67383663-67383682 | MS.gene79696:CDS | 40.0% |
| !! | GGTTTTTCGCCTTTTTGGAA+GGG | + | chr8.4:67382449-67382468 | MS.gene79696:CDS | 40.0% |
| !! | TCCTTCACCGATTCAATAAC+CGG | - | chr8.4:67382426-67382445 | None:intergenic | 40.0% |
| !!! | GTTAGGTAATTTTTGGCCTG+TGG | + | chr8.4:67384105-67384124 | MS.gene79696:intron | 40.0% |
| ACCGGTTATTGAATCGGTGA+AGG | + | chr8.4:67382422-67382441 | MS.gene79696:CDS | 45.0% | |
| AGTTATCTGCTGGTACACTC+GGG | + | chr8.4:67383307-67383326 | MS.gene79696:CDS | 45.0% | |
| ATCTGCAGAAATGGTTCCTC+AGG | - | chr8.4:67383609-67383628 | None:intergenic | 45.0% | |
| CAACAATCGACAGAATCCAC+AGG | - | chr8.4:67384124-67384143 | None:intergenic | 45.0% | |
| GCAGAAGCAATCTGCAGAAA+TGG | - | chr8.4:67383618-67383637 | None:intergenic | 45.0% | |
| TCCAGTACCAATATCACGCA+AGG | - | chr8.4:67383673-67383692 | None:intergenic | 45.0% | |
| ! | CTGTGGATTCTGTCGATTGT+TGG | + | chr8.4:67384122-67384141 | MS.gene79696:CDS | 45.0% |
| ! | GTGAACAAAGGCATGAGCAT+TGG | - | chr8.4:67383436-67383455 | None:intergenic | 45.0% |
| AAGCCTGTTCATTCCGTCCT+CGG | + | chr8.4:67382474-67382493 | MS.gene79696:CDS | 50.0% | |
| CACCGAGAAGCTTCACTTTG+AGG | + | chr8.4:67382353-67382372 | MS.gene79696:CDS | 50.0% | |
| CACGCAAGGCAGAAAATCCT+CGG | - | chr8.4:67383659-67383678 | None:intergenic | 50.0% | |
| CAGCTGCTGATGTGTTCTTG+TGG | + | chr8.4:67383274-67383293 | MS.gene79696:intron | 50.0% | |
| CAGGCTTCTCCCTTCCAAAA+AGG | - | chr8.4:67382461-67382480 | None:intergenic | 50.0% | |
| GATAGACCCTCTGGCAGAAA+AGG | + | chr8.4:67384320-67384339 | MS.gene79696:CDS | 50.0% | |
| GCCTTGCGTGATATTGGTAC+TGG | + | chr8.4:67383669-67383688 | MS.gene79696:CDS | 50.0% | |
| TCGGGACAGCAACTGCTATT+TGG | + | chr8.4:67383325-67383344 | MS.gene79696:CDS | 50.0% | |
| ! | ATGGATGCCTTTTCTGCCAG+AGG | - | chr8.4:67384330-67384349 | None:intergenic | 50.0% |
| ! | CGGGACAGCAACTGCTATTT+GGG | + | chr8.4:67383326-67383345 | MS.gene79696:CDS | 50.0% |
| ! | TGGATGCCTTTTCTGCCAGA+GGG | - | chr8.4:67384329-67384348 | None:intergenic | 50.0% |
| ! | TTCTGTCGATTGTTGGGAGC+TGG | + | chr8.4:67384129-67384148 | MS.gene79696:CDS | 50.0% |
| !! | ATCGGAGAAAAGCACCGTGA+CGG | + | chr8.4:67382293-67382312 | MS.gene79696:CDS | 50.0% |
| CGAGGACAAGATAGACCCTC+TGG | + | chr8.4:67384311-67384330 | MS.gene79696:CDS | 55.0% | |
| ACCGTGACGGTGGATCGTGA+CGG | + | chr8.4:67382306-67382325 | MS.gene79696:CDS | 60.0% | |
| CCTGTTCATTCCGTCCTCGG+CGG | + | chr8.4:67382477-67382496 | MS.gene79696:CDS | 60.0% | |
| !! | GGAGAAAAGCACCGTGACGG+TGG | + | chr8.4:67382296-67382315 | MS.gene79696:CDS | 60.0% |
| CCGCCGAGGACGGAATGAAC+AGG | - | chr8.4:67382480-67382499 | None:intergenic | 65.0% | |
| GCCGTCACGATCCACCGTCA+CGG | - | chr8.4:67382310-67382329 | None:intergenic | 65.0% | |
| GTGACGGTGGATCGTGACGG+CGG | + | chr8.4:67382309-67382328 | MS.gene79696:CDS | 65.0% | |
| GTTCATTCCGTCCTCGGCGG+CGG | + | chr8.4:67382480-67382499 | MS.gene79696:CDS | 65.0% | |
| TCATACGCTTTCCGCCGCCG+AGG | - | chr8.4:67382494-67382513 | None:intergenic | 65.0% | |
| ACGCTTTCCGCCGCCGAGGA+CGG | - | chr8.4:67382490-67382509 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 67382282 | 67384446 | 67382282 | ID=MS.gene79696 |
| chr8.4 | mRNA | 67382282 | 67384446 | 67382282 | ID=MS.gene79696.t1;Parent=MS.gene79696 |
| chr8.4 | exon | 67382282 | 67382507 | 67382282 | ID=MS.gene79696.t1.exon1;Parent=MS.gene79696.t1 |
| chr8.4 | CDS | 67382282 | 67382507 | 67382282 | ID=cds.MS.gene79696.t1;Parent=MS.gene79696.t1 |
| chr8.4 | exon | 67383277 | 67383457 | 67383277 | ID=MS.gene79696.t1.exon2;Parent=MS.gene79696.t1 |
| chr8.4 | CDS | 67383277 | 67383457 | 67383277 | ID=cds.MS.gene79696.t1;Parent=MS.gene79696.t1 |
| chr8.4 | exon | 67383575 | 67383716 | 67383575 | ID=MS.gene79696.t1.exon3;Parent=MS.gene79696.t1 |
| chr8.4 | CDS | 67383575 | 67383716 | 67383575 | ID=cds.MS.gene79696.t1;Parent=MS.gene79696.t1 |
| chr8.4 | exon | 67384110 | 67384179 | 67384110 | ID=MS.gene79696.t1.exon4;Parent=MS.gene79696.t1 |
| chr8.4 | CDS | 67384110 | 67384179 | 67384110 | ID=cds.MS.gene79696.t1;Parent=MS.gene79696.t1 |
| chr8.4 | exon | 67384268 | 67384446 | 67384268 | ID=MS.gene79696.t1.exon5;Parent=MS.gene79696.t1 |
| chr8.4 | CDS | 67384268 | 67384446 | 67384268 | ID=cds.MS.gene79696.t1;Parent=MS.gene79696.t1 |
| Gene Sequence |
| Protein sequence |
