Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79944.t1 | XP_013455380.1 | 93 | 315 | 17 | 3 | 1 | 315 | 1 | 310 | 2.50E-150 | 541.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79944.t1 | P25441 | 32.2 | 152 | 79 | 3 | 177 | 305 | 272 | 422 | 1.1e-08 | 62.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79944.t1 | A0A072UJ26 | 93.0 | 315 | 17 | 3 | 1 | 315 | 1 | 310 | 1.8e-150 | 541.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050227 | MS.gene79944 | 0.801689 | 8.00E-49 | -1.69E-46 |
| MS.gene052665 | MS.gene79944 | 0.806029 | 1.00E-49 | -1.69E-46 |
| MS.gene052896 | MS.gene79944 | 0.808108 | 3.64E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79944.t1 | MTR_4g036455 | 95.238 | 315 | 10 | 3 | 1 | 315 | 1 | 310 | 0.0 | 591 |
| MS.gene79944.t1 | MTR_1g080300 | 38.065 | 310 | 151 | 13 | 2 | 307 | 6 | 278 | 3.95e-46 | 157 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79944.t1 | AT4G25180 | 39.623 | 318 | 146 | 13 | 5 | 308 | 15 | 300 | 1.20e-49 | 167 |
| MS.gene79944.t1 | AT5G09380 | 37.963 | 324 | 138 | 14 | 1 | 313 | 1 | 272 | 6.36e-48 | 162 |
| MS.gene79944.t1 | AT5G09380 | 46.392 | 194 | 85 | 7 | 125 | 313 | 37 | 216 | 2.11e-45 | 154 |
| MS.gene79944.t1 | AT5G09380 | 36.000 | 275 | 117 | 12 | 1 | 266 | 1 | 225 | 3.51e-33 | 122 |
Find 66 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCTTGATAAGATAGAATT+TGG | 0.136497 | 4.3:-63817648 | MS.gene79944:CDS |
| TTTATCATCAGCAGAAAATT+TGG | 0.182176 | 4.3:+63818246 | None:intergenic |
| TACAACATCTTGATCAAGTA+TGG | 0.271210 | 4.3:+63817024 | None:intergenic |
| AGCATCAGCAAAGGCGAAAA+AGG | 0.277394 | 4.3:-63817357 | MS.gene79944:CDS |
| GGAGCTTCCGAGTGGATATA+TGG | 0.286921 | 4.3:-63817321 | MS.gene79944:CDS |
| CCAGAATTGGGCTTCCTTAG+AGG | 0.292912 | 4.3:+63817995 | None:intergenic |
| AGTTCGTGTACGTAGCTTAT+TGG | 0.293904 | 4.3:-63820500 | MS.gene79944:intron |
| ATCTTGATCAAGTATGGTTT+TGG | 0.308348 | 4.3:+63817030 | None:intergenic |
| CTTAATTCCGCAGCAGAACT+TGG | 0.309638 | 4.3:-63817588 | MS.gene79944:CDS |
| CCTCTAAGGAAGCCCAATTC+TGG | 0.328445 | 4.3:-63817995 | MS.gene79944:CDS |
| TTCTTGATAAGATAGAATTT+GGG | 0.337508 | 4.3:-63817647 | MS.gene79944:CDS |
| CAAACCTGGATCTCCAGAAT+TGG | 0.341119 | 4.3:+63817982 | None:intergenic |
| CGCCTTTGCTGATGCTTTCG+AGG | 0.349983 | 4.3:+63817364 | None:intergenic |
| TACTTCTGTGATAGATGTTA+TGG | 0.351570 | 4.3:-63818179 | MS.gene79944:CDS |
| CGCAGCAGAACTTGGGCTCT+TGG | 0.353607 | 4.3:-63817580 | MS.gene79944:intron |
| ACCTTTCGTGGAGTTCTGTT+TGG | 0.356823 | 4.3:+63820784 | None:intergenic |
| GTTTGGATCTTTCTTATCCA+TGG | 0.365988 | 4.3:+63820801 | None:intergenic |
| AGATCAATGGCATCAATATC+AGG | 0.368015 | 4.3:+63816929 | None:intergenic |
| AGTAAAGGGAAGGAGAAAAT+TGG | 0.372837 | 4.3:-63817389 | MS.gene79944:CDS |
| TCACTTTCACTGAGATCATT+TGG | 0.383113 | 4.3:-63818307 | MS.gene79944:CDS |
| TCCTTCCCTTTACTGTTCAC+TGG | 0.389526 | 4.3:+63817398 | None:intergenic |
| AAATAGTTTGGTACCTTTCG+TGG | 0.390750 | 4.3:+63820772 | None:intergenic |
| ATCCTACTACTCTTCCTCTA+AGG | 0.415975 | 4.3:-63818009 | MS.gene79944:CDS |
| GGATAGTTTGAGTTTGTGTC+AGG | 0.427676 | 4.3:+63818028 | None:intergenic |
| CAGCTCAAGTTTATTCCAAA+GGG | 0.441221 | 4.3:-63820674 | MS.gene79944:CDS |
| AGCAACCAGTGAACAGTAAA+GGG | 0.453368 | 4.3:-63817403 | MS.gene79944:CDS |
| GCCATTGATCTTGAATCCAT+TGG | 0.463045 | 4.3:-63816917 | MS.gene79944:CDS |
| AAACCTGGATCTCCAGAATT+GGG | 0.469834 | 4.3:+63817983 | None:intergenic |
| AACACATTCTTCAACTGCTA+TGG | 0.470804 | 4.3:-63818215 | MS.gene79944:CDS |
| AGATCATTTGGCAGTGGCAG+TGG | 0.473266 | 4.3:-63818295 | MS.gene79944:CDS |
| AAGCCCAATTCTGGAGATCC+AGG | 0.473812 | 4.3:-63817986 | MS.gene79944:intron |
| AAATGCATCTCGCGCAGCAC+TGG | 0.480195 | 4.3:+63818342 | None:intergenic |
| GGGTGGAACTTACATCATAC+AGG | 0.486199 | 4.3:+63817246 | None:intergenic |
| TTCCTTAGAGGAAGAGTAGT+AGG | 0.492693 | 4.3:+63818007 | None:intergenic |
| TCCAATGGATTCAAGATCAA+TGG | 0.494630 | 4.3:+63816916 | None:intergenic |
| TTTGGCAGTGGCAGTGGTAA+TGG | 0.504694 | 4.3:-63818289 | MS.gene79944:CDS |
| TGGATATATGGGCAAAATGC+AGG | 0.505913 | 4.3:-63817309 | MS.gene79944:CDS |
| AAGCAACCAGTGAACAGTAA+AGG | 0.517583 | 4.3:-63817404 | MS.gene79944:CDS |
| ACAGCTCAAGTTTATTCCAA+AGG | 0.522946 | 4.3:-63820675 | MS.gene79944:intron |
| TATATATTGCAGGAGAGGGT+TGG | 0.525200 | 4.3:-63818763 | MS.gene79944:intron |
| AAACTACAGTGTTGTTGGGA+AGG | 0.531862 | 4.3:-63816981 | MS.gene79944:CDS |
| TTAATTCCGCAGCAGAACTT+GGG | 0.538505 | 4.3:-63817587 | MS.gene79944:CDS |
| GAGCTTCCGAGTGGATATAT+GGG | 0.539303 | 4.3:-63817320 | MS.gene79944:CDS |
| TTTCTCATATAGGTATCCCC+AGG | 0.552061 | 4.3:-63817055 | MS.gene79944:intron |
| TTCACTGGTTGCTTGACACA+AGG | 0.560755 | 4.3:+63817413 | None:intergenic |
| AGTGAAAGTGATGAATCTCT+AGG | 0.578456 | 4.3:+63818319 | None:intergenic |
| GAAGGTTACAGTTGACGCAA+AGG | 0.581529 | 4.3:-63816963 | MS.gene79944:CDS |
| ACCAGTGAACAGTAAAGGGA+AGG | 0.581704 | 4.3:-63817399 | MS.gene79944:CDS |
| TCACTGAGATCATTTGGCAG+TGG | 0.587322 | 4.3:-63818301 | MS.gene79944:CDS |
| GCCACTGATGTCAAATATGA+TGG | 0.589781 | 4.3:-63817618 | MS.gene79944:CDS |
| ATGAAGACTACACGGAACCA+TGG | 0.591028 | 4.3:-63818141 | MS.gene79944:CDS |
| CACTGATGATGAAGACTACA+CGG | 0.591091 | 4.3:-63818149 | MS.gene79944:CDS |
| CGTGTAGTCTTCATCATCAG+TGG | 0.592625 | 4.3:+63818150 | None:intergenic |
| TCTTGATAAGATAGAATTTG+GGG | 0.600434 | 4.3:-63817646 | MS.gene79944:CDS |
| TTGACACAAGGCAGAACAGT+AGG | 0.608176 | 4.3:+63817425 | None:intergenic |
| TGAAGACTACACGGAACCAT+GGG | 0.628361 | 4.3:-63818140 | MS.gene79944:intron |
| TCCAAACAGAACTCCACGAA+AGG | 0.631732 | 4.3:-63820785 | MS.gene79944:intron |
| TGATAAGATAGAATTTGGGG+AGG | 0.632493 | 4.3:-63817643 | MS.gene79944:CDS |
| ACCATCATATTTGACATCAG+TGG | 0.634261 | 4.3:+63817617 | None:intergenic |
| CAAGAGCCCAAGTTCTGCTG+CGG | 0.648219 | 4.3:+63817581 | None:intergenic |
| AAAATGCAGGTGTATAAGAG+TGG | 0.654564 | 4.3:-63817296 | MS.gene79944:CDS |
| TACCTCGAAAGCATCAGCAA+AGG | 0.671558 | 4.3:-63817366 | MS.gene79944:CDS |
| GGTGGAACTTACATCATACA+GGG | 0.675680 | 4.3:+63817247 | None:intergenic |
| AACTTGCTGGAGCTTCCGAG+TGG | 0.683172 | 4.3:-63817329 | MS.gene79944:CDS |
| AGCTTAAAGAAAATCAACTG+TGG | 0.715988 | 4.3:+63817449 | None:intergenic |
| AGTGGTAATGGTGAAAGCAG+TGG | 0.718273 | 4.3:-63818277 | MS.gene79944:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTATTTTAGTTTTATTCT+TGG | - | chr4.3:63817550-63817569 | MS.gene79944:intron | 10.0% |
| !!! | TCTATTTTTGAAATAATAAT+CGG | - | chr4.3:63817112-63817131 | MS.gene79944:intron | 10.0% |
| !!! | TTTTTTTATATCGTAAAAAT+TGG | - | chr4.3:63817652-63817671 | MS.gene79944:CDS | 10.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | + | chr4.3:63818304-63818323 | None:intergenic | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | - | chr4.3:63818303-63818322 | MS.gene79944:CDS | 15.0% |
| !! | TAGAATATAATAACAAGATA+TGG | + | chr4.3:63818624-63818643 | None:intergenic | 15.0% |
| !! | TTAATAGAAAATGTTATAGT+AGG | - | chr4.3:63818037-63818056 | MS.gene79944:intron | 15.0% |
| !! | TTTGTCAAAAAAAAAAAAAG+AGG | - | chr4.3:63817842-63817861 | MS.gene79944:intron | 15.0% |
| !!! | ATATGTGTTGATTTTTAATA+TGG | - | chr4.3:63820033-63820052 | MS.gene79944:intron | 15.0% |
| !!! | ATGTACAAATTATTTTATTG+TGG | - | chr4.3:63817468-63817487 | MS.gene79944:intron | 15.0% |
| !!! | ATTAAGTGAAAACATTTTTA+CGG | + | chr4.3:63818465-63818484 | None:intergenic | 15.0% |
| !!! | CATTTTGAAACAATTTTTTT+TGG | + | chr4.3:63818178-63818197 | None:intergenic | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | + | chr4.3:63818281-63818300 | None:intergenic | 15.0% |
| !!! | TTAATATAATTTGTGTTTCT+TGG | - | chr4.3:63817502-63817521 | MS.gene79944:intron | 15.0% |
| !! | AAAACTACCAATAGTTAATA+AGG | - | chr4.3:63818294-63818313 | MS.gene79944:CDS | 20.0% |
| !! | AAACTTCTTTGTAAAGAAAA+TGG | + | chr4.3:63819186-63819205 | None:intergenic | 20.0% |
| !! | AAAGTGAAATCTTTATATCT+TGG | + | chr4.3:63817721-63817740 | None:intergenic | 20.0% |
| !! | AACTTGACATAAGAAATTTA+TGG | + | chr4.3:63817788-63817807 | None:intergenic | 20.0% |
| !! | ACATTGTACAAATATATTCA+GGG | + | chr4.3:63818581-63818600 | None:intergenic | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | + | chr4.3:63818218-63818237 | None:intergenic | 20.0% |
| !! | AGCTACTAAAATATATCAAA+AGG | - | chr4.3:63818735-63818754 | MS.gene79944:CDS | 20.0% |
| !! | ATGGTATAATAACCAAAATA+TGG | + | chr4.3:63820593-63820612 | None:intergenic | 20.0% |
| !! | ATTCTTGATAAGATAGAATT+TGG | - | chr4.3:63820061-63820080 | MS.gene79944:intron | 20.0% |
| !! | GAAATGTGTTGAATAAAAAT+CGG | - | chr4.3:63817394-63817413 | MS.gene79944:CDS | 20.0% |
| !! | GGTTATATAATACTATGATA+GGG | + | chr4.3:63818714-63818733 | None:intergenic | 20.0% |
| !! | TACTTCATTCAGTAAATATA+TGG | + | chr4.3:63820495-63820514 | None:intergenic | 20.0% |
| !! | TCAACAATCAATGTTAAAAA+TGG | + | chr4.3:63820612-63820631 | None:intergenic | 20.0% |
| !! | TCAGTAAATATATGGTAAAT+GGG | + | chr4.3:63820487-63820506 | None:intergenic | 20.0% |
| !! | TGGTATAATAACCAAAATAT+GGG | + | chr4.3:63820592-63820611 | None:intergenic | 20.0% |
| !! | TGGTTATATAATACTATGAT+AGG | + | chr4.3:63818715-63818734 | None:intergenic | 20.0% |
| !! | TTCAGTAAATATATGGTAAA+TGG | + | chr4.3:63820488-63820507 | None:intergenic | 20.0% |
| !! | TTCTTGATAAGATAGAATTT+GGG | - | chr4.3:63820062-63820081 | MS.gene79944:intron | 20.0% |
| !!! | AATAATGTTTTGCAAATCTA+AGG | + | chr4.3:63819010-63819029 | None:intergenic | 20.0% |
| !!! | AGATATAAAGATTTCACTTT+TGG | - | chr4.3:63817721-63817740 | MS.gene79944:intron | 20.0% |
| !!! | ATTAGTTTTGTTTCTCATAT+AGG | - | chr4.3:63820644-63820663 | MS.gene79944:intron | 20.0% |
| !!! | ATTTTTGCTAATGTCTAAAT+AGG | + | chr4.3:63819215-63819234 | None:intergenic | 20.0% |
| !!! | CAAAACAAATAAAGCTTTTA+AGG | - | chr4.3:63819755-63819774 | MS.gene79944:intron | 20.0% |
| !!! | GTTTTATTCTTGGTTAATTT+AGG | - | chr4.3:63817560-63817579 | MS.gene79944:intron | 20.0% |
| !!! | GTTTTTGCTGATTAAATTTT+CGG | + | chr4.3:63817982-63818001 | None:intergenic | 20.0% |
| !!! | TACATAGAAAATTTTTCTTC+AGG | - | chr4.3:63820223-63820242 | MS.gene79944:intron | 20.0% |
| !!! | TATATTTTAGTTCATTTCAC+TGG | + | chr4.3:63817367-63817386 | None:intergenic | 20.0% |
| !!! | TGATTATTTTTACCTATTTG+TGG | - | chr4.3:63817890-63817909 | MS.gene79944:intron | 20.0% |
| !!! | TTAAGTGAAAACATTTTTAC+GGG | + | chr4.3:63818464-63818483 | None:intergenic | 20.0% |
| !!! | TTGTTTTATCTATATATTGC+AGG | - | chr4.3:63818936-63818955 | MS.gene79944:intron | 20.0% |
| !!! | TTTATCTCAATAATTTTCTC+AGG | - | chr4.3:63818073-63818092 | MS.gene79944:intron | 20.0% |
| !!! | TTTGATATATTTTAGTAGCT+TGG | + | chr4.3:63818735-63818754 | None:intergenic | 20.0% |
| ! | AAAATGTTATAGTAGGTGTT+TGG | - | chr4.3:63818044-63818063 | MS.gene79944:intron | 25.0% |
| ! | AAGTAGGGAAAAAAATAGTT+TGG | + | chr4.3:63816952-63816971 | None:intergenic | 25.0% |
| ! | AGAATATCTTAGATTCTATG+TGG | - | chr4.3:63819272-63819291 | MS.gene79944:intron | 25.0% |
| ! | CACATTGTACAAATATATTC+AGG | + | chr4.3:63818582-63818601 | None:intergenic | 25.0% |
| ! | CAGGTAATTGAAAATTTGTA+AGG | - | chr4.3:63817753-63817772 | MS.gene79944:intron | 25.0% |
| ! | CAGTAAATATATGGTAAATG+GGG | + | chr4.3:63820486-63820505 | None:intergenic | 25.0% |
| ! | GAATCACAATTAAACTAACT+TGG | + | chr4.3:63820518-63820537 | None:intergenic | 25.0% |
| ! | TATTTCATAGTTGTGATGTT+GGG | - | chr4.3:63819097-63819116 | MS.gene79944:intron | 25.0% |
| ! | TCTTGATAAGATAGAATTTG+GGG | - | chr4.3:63820063-63820082 | MS.gene79944:intron | 25.0% |
| ! | TTAATCAGCAAAAACATGAT+AGG | - | chr4.3:63817987-63818006 | MS.gene79944:CDS | 25.0% |
| ! | TTTATCATCAGCAGAAAATT+TGG | + | chr4.3:63819466-63819485 | None:intergenic | 25.0% |
| !! | AAAAAAGCTATCCCATATTT+TGG | - | chr4.3:63820578-63820597 | MS.gene79944:intron | 25.0% |
| !! | TAGCAAAAATCATTTTACCA+TGG | - | chr4.3:63819225-63819244 | MS.gene79944:intron | 25.0% |
| !! | TTAACATTGATTGTTGAAGT+TGG | - | chr4.3:63820615-63820634 | MS.gene79944:intron | 25.0% |
| !! | TTTTCTGCTGATGATAAATA+TGG | - | chr4.3:63819468-63819487 | MS.gene79944:intron | 25.0% |
| !!! | AAAATATGGGATAGCTTTTT+TGG | + | chr4.3:63820579-63820598 | None:intergenic | 25.0% |
| !!! | AAATATGGGATAGCTTTTTT+GGG | + | chr4.3:63820578-63820597 | None:intergenic | 25.0% |
| !!! | ATTCTAAAACACTTTCCTTT+TGG | - | chr4.3:63819328-63819347 | MS.gene79944:intron | 25.0% |
| !!! | ATTTTGGTTGTTTGAGATTT+GGG | + | chr4.3:63817065-63817084 | None:intergenic | 25.0% |
| !!! | CAAATTGTGTTAGTTTTTTG+TGG | + | chr4.3:63818919-63818938 | None:intergenic | 25.0% |
| !!! | GTCAAAGTAATTTTTTTCCA+TGG | + | chr4.3:63819245-63819264 | None:intergenic | 25.0% |
| !!! | GTTTCTAACACTTTTTTCTA+GGG | - | chr4.3:63819957-63819976 | MS.gene79944:intron | 25.0% |
| !!! | TGTGTTTTTGACTTACATTT+TGG | + | chr4.3:63817081-63817100 | None:intergenic | 25.0% |
| !!! | TGTTTCTAACACTTTTTTCT+AGG | - | chr4.3:63819956-63819975 | MS.gene79944:intron | 25.0% |
| !!! | TTACATTGTTTTGCAACTTT+AGG | + | chr4.3:63818982-63819001 | None:intergenic | 25.0% |
| !!! | TTATTTTTACCTATTTGTGG+TGG | - | chr4.3:63817893-63817912 | MS.gene79944:intron | 25.0% |
| !!! | TTGAGTTTTGACATATAAAG+TGG | + | chr4.3:63819048-63819067 | None:intergenic | 25.0% |
| !!! | TTGGTTAATTTGTGTTTCTT+GGG | - | chr4.3:63817569-63817588 | MS.gene79944:intron | 25.0% |
| !!! | TTGTAGCTTTTAAGAAATCA+CGG | + | chr4.3:63818542-63818561 | None:intergenic | 25.0% |
| !!! | TTTGTTTTGTTTATCAAACC+TGG | + | chr4.3:63819744-63819763 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTACAGTGAAGC+TGG | - | chr4.3:63817159-63817178 | MS.gene79944:intron | 25.0% |
| AACCAAATATTACATGGAAC+CGG | + | chr4.3:63820000-63820019 | None:intergenic | 30.0% | |
| AAGAAAAACTACAGTGTTGT+TGG | - | chr4.3:63820723-63820742 | MS.gene79944:intron | 30.0% | |
| AATCAACACATATCTGTTAG+TGG | + | chr4.3:63820026-63820045 | None:intergenic | 30.0% | |
| AGCTTAAAGAAAATCAACTG+TGG | + | chr4.3:63820263-63820282 | None:intergenic | 30.0% | |
| CCAAATAGAATAGAGAATGT+CGG | - | chr4.3:63819913-63819932 | MS.gene79944:intron | 30.0% | |
| CTATTTCATAGTTGTGATGT+TGG | - | chr4.3:63819096-63819115 | MS.gene79944:intron | 30.0% | |
| GACAATACATGATATATGCA+AGG | - | chr4.3:63818871-63818890 | MS.gene79944:intron | 30.0% | |
| GGAGCAGTCAAATTAAAAAT+AGG | - | chr4.3:63820434-63820453 | MS.gene79944:intron | 30.0% | |
| GGATATATATTAGCAATAGC+CGG | - | chr4.3:63819978-63819997 | MS.gene79944:intron | 30.0% | |
| GTAGTGTGCAGAATATTAAT+TGG | + | chr4.3:63818256-63818275 | None:intergenic | 30.0% | |
| TAAATATATGGTAAATGGGG+TGG | + | chr4.3:63820483-63820502 | None:intergenic | 30.0% | |
| TACAACATCTTGATCAAGTA+TGG | + | chr4.3:63820688-63820707 | None:intergenic | 30.0% | |
| TACTTCTGTGATAGATGTTA+TGG | - | chr4.3:63819530-63819549 | MS.gene79944:intron | 30.0% | |
| TATAATACTATGATAGGGTC+TGG | + | chr4.3:63818709-63818728 | None:intergenic | 30.0% | |
| TATCTATATATTGCAGGAGA+GGG | - | chr4.3:63818942-63818961 | MS.gene79944:intron | 30.0% | |
| TGAATATAACTCACTGCAAT+AGG | - | chr4.3:63818426-63818445 | MS.gene79944:intron | 30.0% | |
| TGGCAAAACCAAATATTACA+TGG | + | chr4.3:63820006-63820025 | None:intergenic | 30.0% | |
| TGTGCAGAATATTAATTGGA+GGG | + | chr4.3:63818252-63818271 | None:intergenic | 30.0% | |
| TTATCTATATATTGCAGGAG+AGG | - | chr4.3:63818941-63818960 | MS.gene79944:intron | 30.0% | |
| TTGCATGAAATTCATCCAAT+AGG | + | chr4.3:63819836-63819855 | None:intergenic | 30.0% | |
| ! | AGAAAAACTACAGTGTTGTT+GGG | - | chr4.3:63820724-63820743 | MS.gene79944:intron | 30.0% |
| ! | ATCTTGATCAAGTATGGTTT+TGG | + | chr4.3:63820682-63820701 | None:intergenic | 30.0% |
| ! | TGAACCTTTGATTTAACTAC+AGG | - | chr4.3:63819656-63819675 | MS.gene79944:intron | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | - | chr4.3:63818386-63818405 | MS.gene79944:intron | 30.0% |
| !! | CTTGGTTAATTTGTGTTTCT+TGG | - | chr4.3:63817568-63817587 | MS.gene79944:intron | 30.0% |
| !! | TCACTTTTGGATTTTTGAAC+AGG | - | chr4.3:63817734-63817753 | MS.gene79944:intron | 30.0% |
| !!! | AAAAGAAAAGCACTTTTCTG+AGG | + | chr4.3:63816984-63817003 | None:intergenic | 30.0% |
| !!! | AACATGATAGGTTTTGAAAG+AGG | - | chr4.3:63817999-63818018 | MS.gene79944:CDS | 30.0% |
| !!! | CATTTTGGTTGTTTGAGATT+TGG | + | chr4.3:63817066-63817085 | None:intergenic | 30.0% |
| !!! | TGCAAGTTTTAAACACCAAA+AGG | + | chr4.3:63819346-63819365 | None:intergenic | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | + | chr4.3:63818385-63818404 | None:intergenic | 30.0% |
| AAAATGCAGGTGTATAAGAG+TGG | - | chr4.3:63820413-63820432 | MS.gene79944:intron | 35.0% | |
| AAATAGTTTGGTACCTTTCG+TGG | + | chr4.3:63816940-63816959 | None:intergenic | 35.0% | |
| AACACATTCTTCAACTGCTA+TGG | - | chr4.3:63819494-63819513 | MS.gene79944:intron | 35.0% | |
| ACAGCTCAAGTTTATTCCAA+AGG | - | chr4.3:63817034-63817053 | MS.gene79944:CDS | 35.0% | |
| ACCATCATATTTGACATCAG+TGG | + | chr4.3:63820095-63820114 | None:intergenic | 35.0% | |
| AGATCAATGGCATCAATATC+AGG | + | chr4.3:63820783-63820802 | None:intergenic | 35.0% | |
| AGTAAAGGGAAGGAGAAAAT+TGG | - | chr4.3:63820320-63820339 | MS.gene79944:intron | 35.0% | |
| AGTGAAAGTGATGAATCTCT+AGG | + | chr4.3:63819393-63819412 | None:intergenic | 35.0% | |
| CAAAGGTTCAGATGCTTATA+TGG | + | chr4.3:63819646-63819665 | None:intergenic | 35.0% | |
| CAGCTCAAGTTTATTCCAAA+GGG | - | chr4.3:63817035-63817054 | MS.gene79944:CDS | 35.0% | |
| CCGACATTCTCTATTCTATT+TGG | + | chr4.3:63819916-63819935 | None:intergenic | 35.0% | |
| CGTAAAAATTGGATGTGTGT+TGG | - | chr4.3:63817663-63817682 | MS.gene79944:intron | 35.0% | |
| GGATCCTGTAGTTAAATCAA+AGG | + | chr4.3:63819663-63819682 | None:intergenic | 35.0% | |
| GGGAAGGAAAGATAATACTT+TGG | - | chr4.3:63819117-63819136 | MS.gene79944:intron | 35.0% | |
| GTGTGCAGAATATTAATTGG+AGG | + | chr4.3:63818253-63818272 | None:intergenic | 35.0% | |
| TACATGATATATGCAAGGTC+CGG | - | chr4.3:63818876-63818895 | MS.gene79944:intron | 35.0% | |
| TCACTTTCACTGAGATCATT+TGG | - | chr4.3:63819402-63819421 | MS.gene79944:intron | 35.0% | |
| TCCAATAGGTGATAGTTTGA+CGG | + | chr4.3:63819822-63819841 | None:intergenic | 35.0% | |
| TGATAAGATAGAATTTGGGG+AGG | - | chr4.3:63820066-63820085 | MS.gene79944:intron | 35.0% | |
| TTCAGCTGCATAATGATAGT+AGG | + | chr4.3:63820188-63820207 | None:intergenic | 35.0% | |
| TTTCGCTTGTCAGAAAGAAT+AGG | - | chr4.3:63817333-63817352 | MS.gene79944:CDS | 35.0% | |
| ! | ATTTTGCCCATATATCCACT+CGG | + | chr4.3:63820398-63820417 | None:intergenic | 35.0% |
| ! | TCCAATGGATTCAAGATCAA+TGG | + | chr4.3:63820796-63820815 | None:intergenic | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | + | chr4.3:63818152-63818171 | None:intergenic | 35.0% |
| !! | ATTGTTTTGCAACTTTAGGC+TGG | + | chr4.3:63818978-63818997 | None:intergenic | 35.0% |
| !!! | TGTTAGTTTTTTGTGGTAGC+CGG | + | chr4.3:63818912-63818931 | None:intergenic | 35.0% |
| AAACCTGGATCTCCAGAATT+GGG | + | chr4.3:63819729-63819748 | None:intergenic | 40.0% | |
| AAGAAACAGCCACCACAAAT+AGG | + | chr4.3:63817905-63817924 | None:intergenic | 40.0% | |
| AAGCAACCAGTGAACAGTAA+AGG | - | chr4.3:63820305-63820324 | MS.gene79944:intron | 40.0% | |
| AGCAACCAGTGAACAGTAAA+GGG | - | chr4.3:63820306-63820325 | MS.gene79944:intron | 40.0% | |
| AGTTCGTGTACGTAGCTTAT+TGG | - | chr4.3:63817209-63817228 | MS.gene79944:intron | 40.0% | |
| ATACTATGATAGGGTCTGGT+AGG | + | chr4.3:63818705-63818724 | None:intergenic | 40.0% | |
| ATCCTACTACTCTTCCTCTA+AGG | - | chr4.3:63819700-63819719 | MS.gene79944:intron | 40.0% | |
| CCAGTATTCCTAAACTGACA+CGG | - | chr4.3:63818820-63818839 | MS.gene79944:intron | 40.0% | |
| GCCACTGATGTCAAATATGA+TGG | - | chr4.3:63820091-63820110 | MS.gene79944:intron | 40.0% | |
| GCCATTGATCTTGAATCCAT+TGG | - | chr4.3:63820792-63820811 | MS.gene79944:CDS | 40.0% | |
| GGTGGAACTTACATCATACA+GGG | + | chr4.3:63820465-63820484 | None:intergenic | 40.0% | |
| TAAGAGCTTCAAACTCACTG+TGG | + | chr4.3:63818517-63818536 | None:intergenic | 40.0% | |
| TATATATTGCAGGAGAGGGT+TGG | - | chr4.3:63818946-63818965 | MS.gene79944:intron | 40.0% | |
| TCATAGTTGTGATGTTGGGA+AGG | - | chr4.3:63819101-63819120 | MS.gene79944:intron | 40.0% | |
| TCCGTCAAACTATCACCTAT+TGG | - | chr4.3:63819818-63819837 | MS.gene79944:intron | 40.0% | |
| TGATACGAATTTCTCACCCA+TGG | + | chr4.3:63819588-63819607 | None:intergenic | 40.0% | |
| TGGATATATGGGCAAAATGC+AGG | - | chr4.3:63820400-63820419 | MS.gene79944:intron | 40.0% | |
| TGGATGAGAAAGATGCAGAT+AGG | + | chr4.3:63819626-63819645 | None:intergenic | 40.0% | |
| TTAATTCCGCAGCAGAACTT+GGG | - | chr4.3:63820122-63820141 | MS.gene79944:intron | 40.0% | |
| TTCCTTAGAGGAAGAGTAGT+AGG | + | chr4.3:63819705-63819724 | None:intergenic | 40.0% | |
| TTTATCATTGTGACCAGAGC+AGG | + | chr4.3:63819298-63819317 | None:intergenic | 40.0% | |
| TTTCTCATATAGGTATCCCC+AGG | - | chr4.3:63820654-63820673 | MS.gene79944:CDS | 40.0% | |
| ! | AAACTACAGTGTTGTTGGGA+AGG | - | chr4.3:63820728-63820747 | MS.gene79944:intron | 40.0% |
| ! | AGCCGGTTCCATGTAATATT+TGG | - | chr4.3:63819995-63820014 | MS.gene79944:intron | 40.0% |
| ! | CACTGATGATGAAGACTACA+CGG | - | chr4.3:63819560-63819579 | MS.gene79944:intron | 40.0% |
| ! | GGATAGTTTGAGTTTGTGTC+AGG | + | chr4.3:63819684-63819703 | None:intergenic | 40.0% |
| !! | TGAGATTTGGGTTTTCCCTT+TGG | + | chr4.3:63817053-63817072 | None:intergenic | 40.0% |
| !!! | AAGTATGGTTTTGGTACCTG+GGG | + | chr4.3:63820673-63820692 | None:intergenic | 40.0% |
| !!! | CAAGTATGGTTTTGGTACCT+GGG | + | chr4.3:63820674-63820693 | None:intergenic | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr4.3:63818409-63818390 | None:intergenic | 40.0% |
| !!! | TCAAGTATGGTTTTGGTACC+TGG | + | chr4.3:63820675-63820694 | None:intergenic | 40.0% |
| ACCAGTGAACAGTAAAGGGA+AGG | - | chr4.3:63820310-63820329 | MS.gene79944:intron | 45.0% | |
| ACCTTTCGTGGAGTTCTGTT+TGG | + | chr4.3:63816928-63816947 | None:intergenic | 45.0% | |
| AGCATCAGCAAAGGCGAAAA+AGG | - | chr4.3:63820352-63820371 | MS.gene79944:intron | 45.0% | |
| ATGAAGACTACACGGAACCA+TGG | - | chr4.3:63819568-63819587 | MS.gene79944:intron | 45.0% | |
| ATGGGTCCAACATAAAGTGG+CGG | + | chr4.3:63819862-63819881 | None:intergenic | 45.0% | |
| CAAACCTGGATCTCCAGAAT+TGG | + | chr4.3:63819730-63819749 | None:intergenic | 45.0% | |
| CCGTGTCAGTTTAGGAATAC+TGG | + | chr4.3:63818823-63818842 | None:intergenic | 45.0% | |
| CGTGTAGTCTTCATCATCAG+TGG | + | chr4.3:63819562-63819581 | None:intergenic | 45.0% | |
| CTGAGGAACACGATGAAGTA+GGG | + | chr4.3:63816967-63816986 | None:intergenic | 45.0% | |
| CTTAATTCCGCAGCAGAACT+TGG | - | chr4.3:63820121-63820140 | MS.gene79944:intron | 45.0% | |
| GAAGGTTACAGTTGACGCAA+AGG | - | chr4.3:63820746-63820765 | MS.gene79944:intron | 45.0% | |
| GAGCTTCCGAGTGGATATAT+GGG | - | chr4.3:63820389-63820408 | MS.gene79944:intron | 45.0% | |
| GGAATGGGTCCAACATAAAG+TGG | + | chr4.3:63819865-63819884 | None:intergenic | 45.0% | |
| GGGTGGAACTTACATCATAC+AGG | + | chr4.3:63820466-63820485 | None:intergenic | 45.0% | |
| TCACTGAGATCATTTGGCAG+TGG | - | chr4.3:63819408-63819427 | MS.gene79944:intron | 45.0% | |
| TCCAAACAGAACTCCACGAA+AGG | - | chr4.3:63816924-63816943 | MS.gene79944:CDS | 45.0% | |
| TCCTTCCCTTTACTGTTCAC+TGG | + | chr4.3:63820314-63820333 | None:intergenic | 45.0% | |
| TCTGAGGAACACGATGAAGT+AGG | + | chr4.3:63816968-63816987 | None:intergenic | 45.0% | |
| TGAAGACTACACGGAACCAT+GGG | - | chr4.3:63819569-63819588 | MS.gene79944:intron | 45.0% | |
| TGTTGGACCCATTCCCAAAA+CGG | - | chr4.3:63819870-63819889 | MS.gene79944:intron | 45.0% | |
| TTGACACAAGGCAGAACAGT+AGG | + | chr4.3:63820287-63820306 | None:intergenic | 45.0% | |
| ! | GAAAAAGGCGAGTAACTTGC+TGG | - | chr4.3:63820367-63820386 | MS.gene79944:intron | 45.0% |
| ! | TTCACTGGTTGCTTGACACA+AGG | + | chr4.3:63820299-63820318 | None:intergenic | 45.0% |
| !! | AGTGGTAATGGTGAAAGCAG+TGG | - | chr4.3:63819432-63819451 | MS.gene79944:intron | 45.0% |
| !! | TACCTCGAAAGCATCAGCAA+AGG | - | chr4.3:63820343-63820362 | MS.gene79944:intron | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr4.3:63818408-63818389 | None:intergenic | 45.0% |
| AAGGTCCGGAGTTCAAACTC+CGG | - | chr4.3:63818890-63818909 | MS.gene79944:intron | 50.0% | |
| AGATCATTTGGCAGTGGCAG+TGG | - | chr4.3:63819414-63819433 | MS.gene79944:intron | 50.0% | |
| AGATTCTATGTGGCCTGCTC+TGG | - | chr4.3:63819282-63819301 | MS.gene79944:intron | 50.0% | |
| ATGATAGGGTCTGGTAGGAC+AGG | + | chr4.3:63818700-63818719 | None:intergenic | 50.0% | |
| CATGAGGACCGTGTCAGTTT+AGG | + | chr4.3:63818831-63818850 | None:intergenic | 50.0% | |
| CCAACTGAGCTAAGCTCATG+AGG | + | chr4.3:63818847-63818866 | None:intergenic | 50.0% | |
| CCAGAATTGGGCTTCCTTAG+AGG | + | chr4.3:63819717-63819736 | None:intergenic | 50.0% | |
| CCTCATGAGCTTAGCTCAGT+TGG | - | chr4.3:63818844-63818863 | MS.gene79944:intron | 50.0% | |
| GGAGCTTCCGAGTGGATATA+TGG | - | chr4.3:63820388-63820407 | MS.gene79944:intron | 50.0% | |
| TGGGTCCAACATAAAGTGGC+GGG | + | chr4.3:63819861-63819880 | None:intergenic | 50.0% | |
| TTTGGCAGTGGCAGTGGTAA+TGG | - | chr4.3:63819420-63819439 | MS.gene79944:intron | 50.0% | |
| ! | AAGCCCAATTCTGGAGATCC+AGG | - | chr4.3:63819723-63819742 | MS.gene79944:intron | 50.0% |
| ! | CAAGTCCCGCCACTTTATGT+TGG | - | chr4.3:63819853-63819872 | MS.gene79944:intron | 50.0% |
| ! | CCTCTAAGGAAGCCCAATTC+TGG | - | chr4.3:63819714-63819733 | MS.gene79944:intron | 50.0% |
| ! | TCGAGTATGTTCCGCCGTTT+TGG | + | chr4.3:63819887-63819906 | None:intergenic | 50.0% |
| !! | CGAGTATGTTCCGCCGTTTT+GGG | + | chr4.3:63819886-63819905 | None:intergenic | 50.0% |
| !!! | ATGTTCCGCCGTTTTGGGAA+TGG | + | chr4.3:63819881-63819900 | None:intergenic | 50.0% |
| !!! | TGTTCCGCCGTTTTGGGAAT+GGG | + | chr4.3:63819880-63819899 | None:intergenic | 50.0% |
| AAATGCATCTCGCGCAGCAC+TGG | + | chr4.3:63819370-63819389 | None:intergenic | 55.0% | |
| CAAGAGCCCAAGTTCTGCTG+CGG | + | chr4.3:63820131-63820150 | None:intergenic | 55.0% | |
| CGCCTTTGCTGATGCTTTCG+AGG | + | chr4.3:63820348-63820367 | None:intergenic | 55.0% | |
| GGTAGCCGGAGTTTGAACTC+CGG | + | chr4.3:63818898-63818917 | None:intergenic | 55.0% | |
| TGGACCCATTCCCAAAACGG+CGG | - | chr4.3:63819873-63819892 | MS.gene79944:intron | 55.0% | |
| !! | AACTTGCTGGAGCTTCCGAG+TGG | - | chr4.3:63820380-63820399 | MS.gene79944:intron | 55.0% |
| CGCAGCAGAACTTGGGCTCT+TGG | - | chr4.3:63820129-63820148 | MS.gene79944:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 63816910 | 63820821 | 63816910 | ID=MS.gene79944 |
| chr4.3 | mRNA | 63816910 | 63820821 | 63816910 | ID=MS.gene79944.t1;Parent=MS.gene79944 |
| chr4.3 | exon | 63820786 | 63820821 | 63820786 | ID=MS.gene79944.t1.exon1;Parent=MS.gene79944.t1 |
| chr4.3 | CDS | 63820786 | 63820821 | 63820786 | ID=cds.MS.gene79944.t1;Parent=MS.gene79944.t1 |
| chr4.3 | exon | 63820647 | 63820693 | 63820647 | ID=MS.gene79944.t1.exon2;Parent=MS.gene79944.t1 |
| chr4.3 | CDS | 63820647 | 63820693 | 63820647 | ID=cds.MS.gene79944.t1;Parent=MS.gene79944.t1 |
| chr4.3 | exon | 63820501 | 63820558 | 63820501 | ID=MS.gene79944.t1.exon3;Parent=MS.gene79944.t1 |
| chr4.3 | CDS | 63820501 | 63820558 | 63820501 | ID=cds.MS.gene79944.t1;Parent=MS.gene79944.t1 |
| chr4.3 | exon | 63818734 | 63818773 | 63818734 | ID=MS.gene79944.t1.exon4;Parent=MS.gene79944.t1 |
| chr4.3 | CDS | 63818734 | 63818773 | 63818734 | ID=cds.MS.gene79944.t1;Parent=MS.gene79944.t1 |
| chr4.3 | exon | 63818141 | 63818364 | 63818141 | ID=MS.gene79944.t1.exon5;Parent=MS.gene79944.t1 |
| chr4.3 | CDS | 63818141 | 63818364 | 63818141 | ID=cds.MS.gene79944.t1;Parent=MS.gene79944.t1 |
| chr4.3 | exon | 63817987 | 63818053 | 63817987 | ID=MS.gene79944.t1.exon6;Parent=MS.gene79944.t1 |
| chr4.3 | CDS | 63817987 | 63818053 | 63817987 | ID=cds.MS.gene79944.t1;Parent=MS.gene79944.t1 |
| chr4.3 | exon | 63817581 | 63817672 | 63817581 | ID=MS.gene79944.t1.exon7;Parent=MS.gene79944.t1 |
| chr4.3 | CDS | 63817581 | 63817672 | 63817581 | ID=cds.MS.gene79944.t1;Parent=MS.gene79944.t1 |
| chr4.3 | exon | 63817259 | 63817486 | 63817259 | ID=MS.gene79944.t1.exon8;Parent=MS.gene79944.t1 |
| chr4.3 | CDS | 63817259 | 63817486 | 63817259 | ID=cds.MS.gene79944.t1;Parent=MS.gene79944.t1 |
| chr4.3 | exon | 63816910 | 63817065 | 63816910 | ID=MS.gene79944.t1.exon9;Parent=MS.gene79944.t1 |
| chr4.3 | CDS | 63816910 | 63817065 | 63816910 | ID=cds.MS.gene79944.t1;Parent=MS.gene79944.t1 |
| Gene Sequence |
| Protein sequence |
