AlfalfaGEDB | MS.gene80040

M. sativa cultivar XinJiangDaYe / MS.gene80040

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914 GO:0097159 GO:1901363
PFAM: PF03638.18 PF13976.9 PF14223.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80040.t1	BBG98627.1	79.7	439	82	2	1	432	1	439	1.00E-184	657.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80040.t1	P10978	34.4	451	268	11	7	436	5	448	4.9e-63	244.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80040.t1	A0A4Y1R3K4	79.7	439	82	2	1	432	1	439	7.2e-185	657.1

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene80040.t1	TF	CPP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene05615	MS.gene80040	0.81193	5.47E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80040.t1	MTR_1g103230	85.042	361	29	4	444	781	223	581	0.0	581
MS.gene80040.t1	MTR_1g103190	45.205	292	84	9	449	708	4	251	3.20e-55	191
MS.gene80040.t1	MTR_5g006530	58.333	156	62	2	612	767	241	393	3.19e-50	186
MS.gene80040.t1	MTR_5g006530	58.333	156	62	2	612	767	465	617	5.67e-50	188
MS.gene80040.t1	MTR_1g012020	34.317	271	156	10	526	782	383	645	4.49e-31	131
MS.gene80040.t1	MTR_2g039140	40.761	184	76	3	1	183	120	271	2.18e-30	121
MS.gene80040.t1	MTR_8g103320	33.173	208	116	7	575	767	12	211	1.77e-22	102
MS.gene80040.t1	MTR_6g087590	42.222	135	68	4	637	767	128	256	2.66e-22	102
MS.gene80040.t1	MTR_3g110122	42.857	126	67	5	637	761	148	269	3.31e-20	95.9
MS.gene80040.t1	MTR_1g103180	40.146	137	66	3	554	689	104	225	2.21e-19	91.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80040.t1	AT3G22780	55.346	159	68	2	621	777	385	542	1.22e-47	181
MS.gene80040.t1	AT4G14770	55.263	152	63	2	616	767	338	484	4.24e-46	175
MS.gene80040.t1	AT4G14770	55.263	152	63	2	616	767	339	485	4.25e-46	176
MS.gene80040.t1	AT4G14770	55.263	152	63	2	616	767	358	504	4.95e-46	176
MS.gene80040.t1	AT3G22760	51.515	165	75	3	616	779	186	346	7.51e-45	169
MS.gene80040.t1	AT3G22760	51.515	165	75	3	616	779	309	469	4.11e-44	169
MS.gene80040.t1	AT3G04850	49.286	140	70	1	634	773	450	588	1.32e-36	147
MS.gene80040.t1	AT3G29785	57.778	90	37	1	11	100	7	95	3.50e-29	112
MS.gene80040.t1	AT5G25790	42.748	131	69	3	637	767	95	219	2.41e-23	104
MS.gene80040.t1	AT5G25790	40.458	131	76	2	637	767	95	223	1.37e-22	102

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Find 159 sgRNAs with CRISPR-Local

Find 323 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATGAAAAGGACGATGA+AGG	0.570624	1.1:+74455482	MS.gene80040:CDS
AAACTTTACCAAGGTTACCA+GGG	0.648516	1.1:-74453092	None:intergenic
AAAGAAACCAGAATCGATGA+AGG	0.539324	1.1:+74452288	MS.gene80040:CDS
AAAGGAACAACTCTGATGAG+AGG	0.637830	1.1:+74455113	MS.gene80040:CDS
AAAGGACGATGAAGGTGCAT+AGG	0.604624	1.1:+74455490	MS.gene80040:CDS
AAATCTTCCAATCATCACCG+TGG	0.678539	1.1:-74453278	None:intergenic
AAATGGACGTGGTAAATCAA+AGG	0.596335	1.1:+74452801	MS.gene80040:CDS
AACCACAGCTGGTCTTATGA+AGG	0.557775	1.1:+74452402	MS.gene80040:CDS
AACCTTGGTAAAGTTTACCT+TGG	0.487612	1.1:+74453099	MS.gene80040:CDS
AAGCAGTCTTGACATGAGCA+AGG	0.654291	1.1:-74456165	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACCAGCTTACTAAAATGA+AGG	-	chr1.1:74455867-74455886	None:intergenic	30.0%
ACAAGATTGTTAACGAAGTT+CGG	-	chr1.1:74454911-74454930	None:intergenic	30.0%
AGAAAATTCTTGGGTGTAAT+TGG	+	chr1.1:74454788-74454807	MS.gene80040:intron	30.0%
ATAAAGTTCATTTGATGAGG+CGG	+	chr1.1:74452461-74452480	MS.gene80040:CDS	30.0%
ATGAAAAGATGTCTTCTCAA+AGG	+	chr1.1:74455242-74455261	MS.gene80040:CDS	30.0%
ATGCTAAATGTTGAAATGGT+TGG	+	chr1.1:74454478-74454497	MS.gene80040:intron	30.0%
CATTTCAACATTTAGCATGT+GGG	-	chr1.1:74454476-74454495	None:intergenic	30.0%
CTATTTATAGATGCATGAAG+TGG	-	chr1.1:74454652-74454671	None:intergenic	30.0%
CTTCATGCATCTATAAATAG+AGG	+	chr1.1:74454652-74454671	MS.gene80040:intron	30.0%
GAAAATTCTTGGGTGTAATT+GGG	+	chr1.1:74454789-74454808	MS.gene80040:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	74452169	74456710	74452169	ID=MS.gene80040
chr1.1	mRNA	74452169	74456710	74452169	ID=MS.gene80040.t1;Parent=MS.gene80040
chr1.1	exon	74452169	74453449	74452169	ID=MS.gene80040.t1.exon1;Parent=MS.gene80040.t1
chr1.1	CDS	74452169	74453449	74452169	ID=cds.MS.gene80040.t1;Parent=MS.gene80040.t1
chr1.1	exon	74454089	74454151	74454089	ID=MS.gene80040.t1.exon2;Parent=MS.gene80040.t1
chr1.1	CDS	74454089	74454151	74454089	ID=cds.MS.gene80040.t1;Parent=MS.gene80040.t1
chr1.1	exon	74455046	74455306	74455046	ID=MS.gene80040.t1.exon3;Parent=MS.gene80040.t1
chr1.1	CDS	74455046	74455306	74455046	ID=cds.MS.gene80040.t1;Parent=MS.gene80040.t1
chr1.1	exon	74455345	74455610	74455345	ID=MS.gene80040.t1.exon4;Parent=MS.gene80040.t1
chr1.1	CDS	74455345	74455610	74455345	ID=cds.MS.gene80040.t1;Parent=MS.gene80040.t1
chr1.1	exon	74455716	74455790	74455716	ID=MS.gene80040.t1.exon5;Parent=MS.gene80040.t1
chr1.1	CDS	74455716	74455790	74455716	ID=cds.MS.gene80040.t1;Parent=MS.gene80040.t1
chr1.1	exon	74456125	74456305	74456125	ID=MS.gene80040.t1.exon6;Parent=MS.gene80040.t1
chr1.1	CDS	74456125	74456305	74456125	ID=cds.MS.gene80040.t1;Parent=MS.gene80040.t1
chr1.1	exon	74456390	74456488	74456390	ID=MS.gene80040.t1.exon7;Parent=MS.gene80040.t1
chr1.1	CDS	74456390	74456488	74456390	ID=cds.MS.gene80040.t1;Parent=MS.gene80040.t1
chr1.1	exon	74456573	74456710	74456573	ID=MS.gene80040.t1.exon8;Parent=MS.gene80040.t1
chr1.1	CDS	74456573	74456710	74456573	ID=cds.MS.gene80040.t1;Parent=MS.gene80040.t1

Gene Sequence

>MS.gene80040

ATGGCTGCAGACGAAGGAAAGGTGAAAATTGAAAAGTTCGATGGTGCGGACTTTGGCTTTTGGAAGATGCAGATCGAAGATTATTTGTATCAGAAAAAGCTACATCAACCTCTCACAGAAAAGAAACCAGAATCGATGAAGGATGATGAGTGGAACCTTCTCGATAGACAAGCACTTGGTGTTGTGCGATTGTCGTTATCTCGAAATGTTGCTTTTAACATAGCAAAAGAGAAAACCACAGCTGGTCTTATGAAGGCTCTTTCTAGCATGTACGAAAAGCCTTCAGCATCAAATAAAGTTCATTTGATGAGGCGGTTGTTTACACTTCGGATGACAGAAGGCGCATCAGTGGCGCAACATATCAATGAACTTAATATTGTCACAACCCAATTAAGTTCAGTTGGTATCGAATTTGACGATGAGGTACGAGCATTGATACTTTTGTCTTCCCTACCAGATAGTTGGAGCGCTACTGTCACAGCTGTGAGTAGCTCCTCGGGAAGCAAAAAGATGAAATTTGATGATGTTCGTGATCTGGTTCTCAGTGAAGAGATCCGACGGAGAGAGTTGGGTGAATTGTCATCCTCTTCAGTATTGCATACAGAGTCAAGAGGAAGAAATTCAACCAGAGGAAATGGACGTGGTAAATCAAAGGCCAGACGATCCAAATCCAGAAATCATCGTAGTTCTCAGAACTCGAAATCTATCGAGTGTTGGAATTGTGGAAAGACGGGACACTTCAAAAATCAGTGTAGGCTCCCAGCAAAGAATCAAGAGGCGAAAGATGATGCAAATGTTGCTTCCACCTCAGGAGGAGGTGACGCGTTGATATGTTCTTTGGAGAGCAAGGAAGAGTCTTGGGTGTTAGACTCTGGAGCGTCTTTTCATGCCACTTCCCAGAAAGAATTGTTCAAGAATTATGTCCCTGGTAACCTTGGTAAAGTTTACCTTGGAAATGAACAATCTTGTAAGGTTGTGGGCAAAGGTGAAGTTAAGATTAAGTTGAATGGGTCTGTATGGGAATTGAAAAATGTCAGACATATTCCCGACCTCACGAAAAACTTAATCTCCGTAGGCCAGTTGGCTGACGAAGGCTACACAACAGTCTTCCACGGTGATGATTGGAAGATTTCAAAAGGTGCAATGACGATAGCTCGCGGTAGAAAGAGTGGTACTCTTTACAAGACAGCTGGAGCATGCCATTTGATTGCAGTTACAACAAATGAAAATCCTAATCTATGGCACAAGAGATTAGGCCATATGAGTGAAAAGGGGATGAAGGTTATGCACTCAAAAGGAAAACTACCAAGTCTTCGGTCAATAGAAATTGACATATGTGAAGACTATATACTTGGAAAGCAGAAGATAGTCAGCTTTCAGATAAGTGGAAGAACCCCAAAGAAGGAGAGCCGTGGTTTGACGAAAGGTTCGACCGGCTCCTTGTGTCGAAAGTCCTCCTGACCAAGTGTGTTCAGGCGGCGTGTTCCGTTGAGTGCAGCAACGGCGGTACAAGTATACATGTGTGTGGATGAAAGAGCTTCCGCTTGAGGAGATATACATGCACCAATCAGAAGGATTCTCAGAAGAAGTGAAGAGAATATGGTGTGCAGGCTAAAGAAGAGCTTGTATGGCCTGAAACAAGCTCCAAGGCAGTGGTATATGAAGTTTGAAAGCTTCATGCACAAGGAAGGTTTCCAGAAGTGCAATGCCGACCATTGTTGCTTCTTCAAGAGATATAAGTCAAGTTATATCATTTTGCTACTTTATGTTGATGATATGTTAGTAGCAGGCTCAGACATTGATGAGATCAAAAACTTGAAGATGCAATTGTCAAAAGAGTTTGACATGAAGGATTTAGGTCAGGCAAAGAAAATTCTTGGTATGCAAATCACGAGAGATAAGCAAAAAGGAGTTTTGCAGTTATCTCAAGCAGAGTACATCAACTATGTTTTGCAAAGATTCAACATGGGCGATGCCAAAACGGTTAGCACGCCGTTGGCAAGTCATTTTCGCCTATCCCAAGAACAATCACCTCAGACGGAGGAAGAAAAAGAACTCATGGCCAAGATTCCATATGCTTCAGCAATTGGAAGTTTGATGTACGCAATGGTTTGTACGAGGCCAGACATTGGCCATGCAGTGGGAGTTGTTAGCAGGTTTATCGACAAACTGAAGTTGTGCTCAACTTCAGTTGACCTGCTAGAGTAAGAGACCAGAGAAGGCTGCTGCATGATCGAGGTGTGAAGATCGATTGAAATCAATCTTCAAGTGGGAGATTGTTGGTGAACATGTGTGGGGGCCACACCCACATGCTAAATGTTGAAATGGTTGGTGAACTTTGACCCATTCCATGTGAATACACCAAAAGTTTTTAGGCATTTGGCAGCTGTACGCATGGCAAGAGTTGGTGGCAAGAGTTGGTGGTGCATCAATTGTTGAACATAGAAGAACAAGTTCAAATTGTATACAAGTCATACAAGCCACTTCATGCATCTATAAATAGAGGTGCATATCAAAACAACAACACAACACCAGAAACAACACAGAGAAGCAAAAATACCACAACAATGTAGTCCATTACATCAATAGAGTTAGAAAAACTCAGTGTGAGAATTTTAGAGAAAATTCTTGGGTGTAATTGGGTTGTGGGTAGTGAGAGTTTTGTGAGTGTTTGTAAACACATATATTTCCCTTTATTAAAAGATCTGCAGCAGCAGTCCGGAGAGTAGGCATTATTGGCCGAACTTCGTTAACAATCTTGTGTGTTGTTATTCCGCATTTATTTCGCTTCCACTTAATCTGACCATGGGGAAATTGTGCGTAGTTTCCTAACATGAACAACTCAATCATTGTAAAAATACTTTTGTTTGTGTATAGCTTGCACGTATTAGACGCAGTATACAGATGAGCTGTCAAGGCTATGAGTCTGAGATGACCAGTATGCAAAGGAACAACTCTGATGAGAGGAATGCTATTAACAAAAACCCTAGTGATTCACAGAAGTGTGTTTTGCAAGGAAATGGTTTTTACTGGAATGCACTTCCAGCCTTAAATCATTACGAAGGCATAGAAAATGAAAAGATGTCTTCTCAAAGGAAACCTGAATCACCGAGCTGCACTTATTCTTTGAATATTTCTGTAAGTCTCAACCATCTCAAGTCTCTGCACCAATGGAGACACATTTACGGCTATCTGAGAATGAAGATGTCACCAAGTCATCAGTTCACATTCCTGGTGAAGATTTCTGTCAGAGTACTCCCAAAAGGACGAGTGAAGTGCAATTTAAGGACATAAAGAACAAAAAGTTAGATCAAAACATGAAAAGGACGATGAAGGTGCATAGGAAAGGCTCGATTGATCTAGTTTCTTCTGGTTCAGAACATGTAAAGGAAGAGGAAAGAGCTGATTTCTGTCAGAGTATCCGCAAAAGGAAGAGGAAAGTGTAGTTGTTGATTATCGATTCCTCTGCTTGATAATCTTTATTCCATTATTATATGTTAGTTTTTAACTTTCTTCATTAGCCTAACACCAAAGTTCGACTTTGCAGGAACACGTCAGATCTAACTAGGAAAGGAGGGGCATGCAAACACTGTAAATGCAAAAAATCAAAGTGTTTGAAACTGTAAGTTATAAAACTTGTTCCTTTTTTTGGGTGATAGCACAAAGATAAAGCTACTGTTATAAGTTTTGAATTACCTTCATTTTAGTAAGCTGGTTTTTGTACTGTTTTCTAGATTTATTTTGAAAAAATGTCAACTTACCTTTACATCCCCTAGATATAAAATTACTTTCACCAAGACTCTACTCGAGTCTAATAATCGTATCAATTTCTCTTAGTTTTATGCTTACTTTTTTTCTCTGCTATTTTTTTTTTTGTCACATTTAAGCTTTGACAATAATTGGGTTAAATGCCTTTCAAATTAACCTTTTGTTTACTTTTTTTGCTTCTTTTTCAGTAATTGTGGCTGCTTTGCTGCTGGAGTCTACTGCACAGGACCTTGCTCATGTCAAGACTGCTTGAATAAACATATTAATGAAGATACAGTTCTGCAAGCTCGCAGGATGATTGAGTATCGTAATCCACCTGCATTTGTTCCTAAAGTTCGAAAGAATTCTGGTTCCTCACCTCAAATTGTGGTCAGAAACTAAATTTAAACTTTATTTTATTTTTTTACTTTTGGATTTGATCCTATATTAATGATATTGATATTCTTCTTGTAGGATGACCCCAACAAAGCTCCAGCTTCAAAGCGACAACGCAGAATACGATGCAAGTGCAGGAAATCAAGCTGCATGAATAAACGTTGTGAATGTTTTAAGGTTTTCTCCATTGTTTACATATTATGTATGTTTTTAATTTCATTTATAATAATATGAATTACAATGGGTGGTTTTATTTTGAAGGGTGGTGTTGCTTGTTCCCCAAGTTGTAAATGTGAAGGGTGCGAAAATATACATGGTAGGAAGGATAGTGCAGCTGAAACAAAATCTGAGCTTGAAGAAACAGAAGCATCACAGATAAAGCTACTAATTGGTATGTAA

Protein sequence

>MS.gene80040.t1

MAADEGKVKIEKFDGADFGFWKMQIEDYLYQKKLHQPLTEKKPESMKDDEWNLLDRQALGVVRLSLSRNVAFNIAKEKTTAGLMKALSSMYEKPSASNKVHLMRRLFTLRMTEGASVAQHINELNIVTTQLSSVGIEFDDEVRALILLSSLPDSWSATVTAVSSSSGSKKMKFDDVRDLVLSEEIRRRELGELSSSSVLHTESRGRNSTRGNGRGKSKARRSKSRNHRSSQNSKSIECWNCGKTGHFKNQCRLPAKNQEAKDDANVASTSGGGDALICSLESKEESWVLDSGASFHATSQKELFKNYVPGNLGKVYLGNEQSCKVVGKGEVKIKLNGSVWELKNVRHIPDLTKNLISVGQLADEGYTTVFHGDDWKISKGAMTIARGRKSGTLYKTAGACHLIAVTTNENPNLWHKRLGHMSEKGMKLSQAEYINYVLQRFNMGDAKTLARIRRSIQMSCQGYESEMTSMQRNNSDERNAINKNPSDSQKCVLQGNGFYWNALPALNHYEGIENEKMSSQRKPESPSCTYSLNISTHLRLSENEDVTKSSVHIPGEDFCQSTPKRTSEVQFKDIKNKKLDQNMKRTMKVHRKGSIDLVSSGSEHVKEEERADFCQSIRKRKRKVNTSDLTRKGGACKHCKCKKSKCLKLNCGCFAAGVYCTGPCSCQDCLNKHINEDTVLQARRMIEYRNPPAFVPKVRKNSGSSPQIVDDPNKAPASKRQRRIRCKCRKSSCMNKRCECFKGGVACSPSCKCEGCENIHGRKDSAAETKSELEETEASQIKLLIGM