Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80105.t1 | XP_003601451.1 | 98.2 | 443 | 8 | 0 | 1 | 443 | 1 | 443 | 1.30E-245 | 858.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80105.t1 | Q9SGU9 | 75.8 | 401 | 96 | 1 | 39 | 438 | 40 | 440 | 1.4e-176 | 620.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80105.t1 | G7J805 | 98.2 | 443 | 8 | 0 | 1 | 443 | 1 | 443 | 9.2e-246 | 858.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene75011 | MS.gene80105 | PPI |
| MS.gene029829 | MS.gene80105 | PPI |
| MS.gene24606 | MS.gene80105 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80105.t1 | MTR_3g080850 | 98.194 | 443 | 8 | 0 | 1 | 443 | 1 | 443 | 0.0 | 897 |
| MS.gene80105.t1 | MTR_1g077890 | 77.381 | 420 | 94 | 1 | 23 | 441 | 24 | 443 | 0.0 | 662 |
| MS.gene80105.t1 | MTR_6g012730 | 30.058 | 346 | 227 | 7 | 92 | 433 | 138 | 472 | 2.32e-42 | 156 |
| MS.gene80105.t1 | MTR_7g011230 | 30.240 | 334 | 216 | 8 | 92 | 420 | 196 | 517 | 7.64e-40 | 150 |
| MS.gene80105.t1 | MTR_1g064320 | 29.319 | 382 | 231 | 13 | 48 | 420 | 97 | 448 | 1.95e-36 | 139 |
| MS.gene80105.t1 | MTR_1g064320 | 29.319 | 382 | 231 | 13 | 48 | 420 | 96 | 447 | 2.44e-36 | 139 |
| MS.gene80105.t1 | MTR_6g012730 | 28.530 | 347 | 211 | 8 | 92 | 433 | 138 | 452 | 4.92e-34 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80105.t1 | AT1G64660 | 75.622 | 402 | 97 | 1 | 39 | 439 | 40 | 441 | 0.0 | 634 |
| MS.gene80105.t1 | AT3G01120 | 34.132 | 334 | 203 | 8 | 92 | 420 | 224 | 545 | 7.00e-52 | 184 |
| MS.gene80105.t1 | AT1G33320 | 30.357 | 336 | 216 | 9 | 90 | 420 | 33 | 355 | 2.43e-42 | 154 |
| MS.gene80105.t1 | AT1G33320 | 30.357 | 336 | 216 | 9 | 90 | 420 | 72 | 394 | 5.60e-42 | 154 |
| MS.gene80105.t1 | AT1G33320 | 29.907 | 321 | 207 | 9 | 105 | 420 | 3 | 310 | 2.86e-37 | 139 |
| MS.gene80105.t1 | AT3G57050 | 29.032 | 403 | 246 | 14 | 46 | 439 | 13 | 384 | 1.41e-35 | 135 |
| MS.gene80105.t1 | AT3G57050 | 29.032 | 403 | 246 | 14 | 46 | 439 | 35 | 406 | 1.95e-35 | 135 |
| MS.gene80105.t1 | AT3G57050 | 29.032 | 403 | 246 | 14 | 46 | 439 | 76 | 447 | 4.71e-35 | 135 |
| MS.gene80105.t1 | AT3G57050 | 29.032 | 403 | 246 | 14 | 46 | 439 | 91 | 462 | 5.88e-35 | 135 |
| MS.gene80105.t1 | AT3G57050 | 31.613 | 310 | 175 | 12 | 46 | 341 | 91 | 377 | 1.16e-30 | 122 |
Find 123 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCAAAACTATGCTCATTT+TGG | 0.190448 | 8.4:+69073715 | MS.gene80105:CDS |
| GCCAATGCTCGCCATGAATT+TGG | 0.212466 | 8.4:+69072083 | MS.gene80105:CDS |
| GTGGCTTCAAGTACTCTTTA+TGG | 0.257967 | 8.4:+69072371 | MS.gene80105:CDS |
| AGCTAGGATTGCACACAAAA+AGG | 0.264016 | 8.4:+69072571 | MS.gene80105:CDS |
| GATACGTTGGCTAATGTTAA+TGG | 0.309750 | 8.4:+69071951 | MS.gene80105:CDS |
| GCGTCTTTGCCCTCAACAAC+AGG | 0.334858 | 8.4:-69072002 | None:intergenic |
| GCATTGGCGAGTGCGGCCTC+TGG | 0.336111 | 8.4:-69072068 | None:intergenic |
| GAGGAGGAACAGAAGCTTGC+TGG | 0.340807 | 8.4:+69073814 | MS.gene80105:CDS |
| CGCCATGTTCGCCAAATTCA+TGG | 0.350702 | 8.4:-69072094 | None:intergenic |
| ATGAATTTGGCGAACATGGC+GGG | 0.358137 | 8.4:+69072096 | MS.gene80105:CDS |
| GGCTGTACAATAGGCGGCCT+CGG | 0.370564 | 8.4:-69072288 | None:intergenic |
| CGCCATGAATTTGGCGAACA+TGG | 0.371909 | 8.4:+69072092 | MS.gene80105:CDS |
| GGCTGAGATTGAGGACGGTT+GGG | 0.382101 | 8.4:-69072241 | None:intergenic |
| GGTGGTGGTGACATTATTGC+AGG | 0.382112 | 8.4:+69072695 | MS.gene80105:CDS |
| ACGGCTGTAGACGTAGTAAT+TGG | 0.384127 | 8.4:-69072210 | None:intergenic |
| GGCAACAAAAGTTATGGATA+TGG | 0.384179 | 8.4:+69073634 | MS.gene80105:CDS |
| ACTACCAGAGCAAGACATTA+GGG | 0.386384 | 8.4:-69073770 | None:intergenic |
| CATGCCACTGGCTGTACAAT+AGG | 0.389277 | 8.4:-69072297 | None:intergenic |
| GACAGTTCAAATGCTACCTT+AGG | 0.389785 | 8.4:-69073466 | None:intergenic |
| CATTGGCGAGTGCGGCCTCT+GGG | 0.396642 | 8.4:-69072067 | None:intergenic |
| CGGCTGAGATTGAGGACGGT+TGG | 0.412741 | 8.4:-69072242 | None:intergenic |
| ACTCTCCGCAAAATATTTGC+TGG | 0.420553 | 8.4:+69072170 | MS.gene80105:CDS |
| TACTACCAGAGCAAGACATT+AGG | 0.431550 | 8.4:-69073771 | None:intergenic |
| TCCATAGGCAACAAAAGTTA+TGG | 0.434769 | 8.4:+69073628 | MS.gene80105:CDS |
| CTGTAACAAAACTGCAGAAA+TGG | 0.436117 | 8.4:-69072324 | None:intergenic |
| CCTAGCTAGCTCAGGAGTAT+TGG | 0.444269 | 8.4:-69072555 | None:intergenic |
| AAAATATTTGCTGGAGAGCT+TGG | 0.450787 | 8.4:+69072179 | MS.gene80105:CDS |
| CTTCGAGGGCCGCCATCTTA+CGG | 0.450790 | 8.4:-69072262 | None:intergenic |
| GCCAAATTCATGGCGAGCAT+TGG | 0.456801 | 8.4:-69072084 | None:intergenic |
| ATTCTCAACTGCTTTCAAAT+CGG | 0.457404 | 8.4:-69072465 | None:intergenic |
| CCAATACTCCTGAGCTAGCT+AGG | 0.463921 | 8.4:+69072555 | MS.gene80105:CDS |
| TCAAGGAGCCATGATGCTGC+TGG | 0.465864 | 8.4:+69073429 | MS.gene80105:CDS |
| AGGCGGCCTCGGTGCCTTCG+AGG | 0.465951 | 8.4:-69072277 | None:intergenic |
| TTGCTTTCTCCTGCTCGTCT+TGG | 0.466436 | 8.4:+69072632 | MS.gene80105:CDS |
| CTCGAAAACCCTGTTGTTGA+GGG | 0.476215 | 8.4:+69071993 | MS.gene80105:CDS |
| AGAAATGCTGCAAGAGTGCA+TGG | 0.496586 | 8.4:-69072400 | None:intergenic |
| GTCAGAGAGAATCCCACACT+TGG | 0.498789 | 8.4:+69073486 | MS.gene80105:CDS |
| GCTACCTTAGGGTTCATTGT+TGG | 0.500742 | 8.4:-69073454 | None:intergenic |
| TGACATGGGAACAGTGGAAA+AGG | 0.500768 | 8.4:+69073672 | MS.gene80105:CDS |
| CCATCTTACGGCTGAGATTG+AGG | 0.506032 | 8.4:-69072250 | None:intergenic |
| CAAGGAGCCATGATGCTGCT+GGG | 0.506322 | 8.4:+69073430 | MS.gene80105:CDS |
| CAGTCACGGCGGACATGTTG+TGG | 0.506563 | 8.4:+69072352 | MS.gene80105:CDS |
| AGGAGGAACAGAAGCTTGCT+GGG | 0.507283 | 8.4:+69073815 | MS.gene80105:CDS |
| CCTCAATCTCAGCCGTAAGA+TGG | 0.509888 | 8.4:+69072250 | MS.gene80105:CDS |
| ACTGACATCCTCACCATCCC+TGG | 0.518257 | 8.4:-69073844 | None:intergenic |
| TGTGGATGATCTTCAAGGCC+AGG | 0.519513 | 8.4:-69073589 | None:intergenic |
| CCTCGAAAACCCTGTTGTTG+AGG | 0.520765 | 8.4:+69071992 | MS.gene80105:CDS |
| GGCGGCCTCGGTGCCTTCGA+GGG | 0.521473 | 8.4:-69072276 | None:intergenic |
| CATGCTGTGGATGATCTTCA+AGG | 0.523751 | 8.4:-69073594 | None:intergenic |
| GACTGTGTTCTTTCATGCGA+AGG | 0.524215 | 8.4:-69073510 | None:intergenic |
| TTGTTACAGCTCTGCAGTCA+CGG | 0.524845 | 8.4:+69072338 | MS.gene80105:CDS |
| AACAAAAGTTATGGATATGG+TGG | 0.525805 | 8.4:+69073637 | MS.gene80105:CDS |
| AGAAATGGCGGACATGCCAC+TGG | 0.527021 | 8.4:-69072309 | None:intergenic |
| GTATTGGCCACATTCAAGCT+TGG | 0.529452 | 8.4:-69072539 | None:intergenic |
| TGTTGGCCCCAGCAGCATCA+TGG | 0.530505 | 8.4:-69073437 | None:intergenic |
| GGAGCAGAAGTGGAGTCAGC+TGG | 0.536681 | 8.4:+69073885 | MS.gene80105:CDS |
| TGTGCAATCCTAGCTAGCTC+AGG | 0.537083 | 8.4:-69072563 | None:intergenic |
| CGAGCAGGAGAAAGCAACAT+AGG | 0.539175 | 8.4:-69072626 | None:intergenic |
| ATCTCTAAGTTTATCAGTGG+TGG | 0.542218 | 8.4:+69072677 | MS.gene80105:CDS |
| TCTAAGTTTATCAGTGGTGG+TGG | 0.543204 | 8.4:+69072680 | MS.gene80105:CDS |
| AGAAAGCAACATAGGAGCAA+AGG | 0.544322 | 8.4:-69072618 | None:intergenic |
| GAAACCCTAATGTCTTGCTC+TGG | 0.544821 | 8.4:+69073766 | MS.gene80105:CDS |
| TTGGAACATTGGAGCAGAAG+TGG | 0.548304 | 8.4:+69073875 | MS.gene80105:CDS |
| CGTAAGATGGCGGCCCTCGA+AGG | 0.549334 | 8.4:+69072263 | MS.gene80105:CDS |
| CGGGGTTAACATGTCGATTG+AGG | 0.551059 | 8.4:+69072115 | MS.gene80105:CDS |
| AGTTGGATACATTGGAACAT+TGG | 0.552093 | 8.4:+69073864 | MS.gene80105:CDS |
| AGAACACAGTCATCGTGCAT+TGG | 0.554112 | 8.4:+69073522 | MS.gene80105:CDS |
| GCTTCAAGTACTCTTTATGG+TGG | 0.554413 | 8.4:+69072374 | MS.gene80105:CDS |
| ACATCTGCACCAAGACGAGC+AGG | 0.554578 | 8.4:-69072641 | None:intergenic |
| CACAAGTAGTGAGCTGAATG+AGG | 0.555659 | 8.4:+69073795 | MS.gene80105:CDS |
| TGAATTTGGCGAACATGGCG+GGG | 0.557188 | 8.4:+69072097 | MS.gene80105:CDS |
| CGTCTTTGCCCTCAACAACA+GGG | 0.558410 | 8.4:-69072001 | None:intergenic |
| AAGCTTGCTGGGATTACACC+AGG | 0.558665 | 8.4:+69073826 | MS.gene80105:CDS |
| AGGATGTCAGTTGGATACAT+TGG | 0.562882 | 8.4:+69073856 | MS.gene80105:CDS |
| AGAATACATGGCGGATACGT+TGG | 0.566079 | 8.4:+69071938 | None:intergenic |
| GTTGAGAATGCAATTGTGGA+AGG | 0.566748 | 8.4:+69072479 | MS.gene80105:CDS |
| TGGGATTCTTTGTGTTGACA+TGG | 0.568096 | 8.4:+69073657 | MS.gene80105:CDS |
| ATGGCGAGCATTGGCGAGTG+CGG | 0.568985 | 8.4:-69072075 | None:intergenic |
| AATGCATTGATGGGAATTCA+AGG | 0.575300 | 8.4:+69073412 | MS.gene80105:CDS |
| GGACGGTTGGGTTGAAATGA+CGG | 0.578007 | 8.4:-69072229 | None:intergenic |
| TCTTGCAGCATTTCTTTGTG+AGG | 0.579069 | 8.4:+69072408 | MS.gene80105:CDS |
| CTTCAAGTACTCTTTATGGT+GGG | 0.580804 | 8.4:+69072375 | MS.gene80105:CDS |
| GTGGATGATCTTCAAGGCCA+GGG | 0.583912 | 8.4:-69073588 | None:intergenic |
| CTCTGCCACATTCACCGTCA+TGG | 0.583918 | 8.4:+69072139 | MS.gene80105:CDS |
| CATGACGGTGAATGTGGCAG+AGG | 0.584556 | 8.4:-69072138 | None:intergenic |
| TGCTGGGATTACACCAGGGA+TGG | 0.584958 | 8.4:+69073831 | MS.gene80105:CDS |
| GGGATTCTTTGTGTTGACAT+GGG | 0.594450 | 8.4:+69073658 | MS.gene80105:CDS |
| GGATATGTCAACAAAAGTTG+TGG | 0.595732 | 8.4:-69072444 | None:intergenic |
| ACAGTTCAAATGCTACCTTA+GGG | 0.595923 | 8.4:-69073465 | None:intergenic |
| TGCAAATCCAAGCTTGAATG+TGG | 0.596227 | 8.4:+69072532 | MS.gene80105:CDS |
| AGCAGTTGAGAATGCAATTG+TGG | 0.599648 | 8.4:+69072475 | MS.gene80105:CDS |
| TCATGCGAAGGCCCAAGTGT+GGG | 0.600196 | 8.4:-69073498 | None:intergenic |
| ACAAAAGTTATGGATATGGT+GGG | 0.603374 | 8.4:+69073638 | MS.gene80105:CDS |
| AAGGAGCCATGATGCTGCTG+GGG | 0.605331 | 8.4:+69073431 | MS.gene80105:CDS |
| GGATTACACCAGGGATGGTG+AGG | 0.605740 | 8.4:+69073836 | MS.gene80105:CDS |
| GCCGCCTATTGTACAGCCAG+TGG | 0.608219 | 8.4:+69072293 | MS.gene80105:CDS |
| GGACTCAATGTGATCTACCC+TGG | 0.608765 | 8.4:+69073571 | MS.gene80105:CDS |
| TTCATGCGAAGGCCCAAGTG+TGG | 0.609520 | 8.4:-69073499 | None:intergenic |
| CATGAACTGTTGAAATCCAT+AGG | 0.610789 | 8.4:+69073613 | MS.gene80105:CDS |
| CATGAATTTGGCGAACATGG+CGG | 0.617629 | 8.4:+69072095 | MS.gene80105:CDS |
| GGGGCCAACAATGAACCCTA+AGG | 0.623386 | 8.4:+69073450 | MS.gene80105:CDS |
| CTTACGGCTGAGATTGAGGA+CGG | 0.623850 | 8.4:-69072246 | None:intergenic |
| GTGCATTGGAATTTGCAACC+AGG | 0.624441 | 8.4:+69073536 | MS.gene80105:CDS |
| TGGTTCCATGACGGTGAATG+TGG | 0.625634 | 8.4:-69072144 | None:intergenic |
| GGGATGGTGAGGATGTCAGT+TGG | 0.628293 | 8.4:+69073847 | MS.gene80105:CDS |
| TTGTGTTGACATGGGAACAG+TGG | 0.634308 | 8.4:+69073666 | MS.gene80105:CDS |
| GAGAGTATCTGGTTCCATGA+CGG | 0.637077 | 8.4:-69072153 | None:intergenic |
| AGTATCTCTAAGTTTATCAG+TGG | 0.640242 | 8.4:+69072674 | MS.gene80105:CDS |
| TTGAGAATGCAATTGTGGAA+GGG | 0.645173 | 8.4:+69072480 | MS.gene80105:CDS |
| TAACAAAACTGCAGAAATGG+CGG | 0.648658 | 8.4:-69072321 | None:intergenic |
| TCAGAGAGAATCCCACACTT+GGG | 0.650245 | 8.4:+69073487 | MS.gene80105:CDS |
| GATTTCAACAGTTCATGCTG+TGG | 0.653331 | 8.4:-69073607 | None:intergenic |
| GGCGGCCCTCGAAGGCACCG+AGG | 0.659707 | 8.4:+69072271 | MS.gene80105:CDS |
| AAAATGACAGGAGCTGTGTG+TGG | 0.660955 | 8.4:+69073373 | MS.gene80105:intron |
| CAATCTCAGCCGTAAGATGG+CGG | 0.663207 | 8.4:+69072253 | MS.gene80105:CDS |
| GAAATGCTGCAAGAGTGCAT+GGG | 0.674218 | 8.4:-69072399 | None:intergenic |
| AAGTAGTGAGCTGAATGAGG+AGG | 0.679239 | 8.4:+69073798 | MS.gene80105:CDS |
| AAACTGACAAAATTCAATGG+CGG | 0.687533 | 8.4:+69072029 | MS.gene80105:CDS |
| GCCACTGGCTGTACAATAGG+CGG | 0.689799 | 8.4:-69072294 | None:intergenic |
| AGCTTGCTGGGATTACACCA+GGG | 0.693807 | 8.4:+69073827 | MS.gene80105:CDS |
| AAATGACAGGAGCTGTGTGT+GGG | 0.705210 | 8.4:+69073374 | MS.gene80105:intron |
| AGAGTCTGACATAGACCCAG+AGG | 0.725222 | 8.4:+69072052 | MS.gene80105:CDS |
| TTACAGCTCTGCAGTCACGG+CGG | 0.758139 | 8.4:+69072341 | MS.gene80105:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAATATATTTTAAAAAAA+AGG | - | chr8.4:69072836-69072855 | None:intergenic | 0.0% |
| !! | AACAAATATAAATATAATGT+TGG | - | chr8.4:69072897-69072916 | None:intergenic | 10.0% |
| !!! | ATCAAAATAACTTTTTATTA+AGG | - | chr8.4:69073260-69073279 | None:intergenic | 10.0% |
| !!! | TATATTTTAAAAAAAAGGAA+AGG | - | chr8.4:69072831-69072850 | None:intergenic | 10.0% |
| !! | AAAAAACTGACAAAATTCAA+TGG | + | chr8.4:69072026-69072045 | MS.gene80105:CDS | 20.0% |
| !! | ATAGAGTAATATTAATAACG+TGG | + | chr8.4:69073136-69073155 | MS.gene80105:intron | 20.0% |
| !! | GTTATTAATATTACTCTATC+CGG | - | chr8.4:69073135-69073154 | None:intergenic | 20.0% |
| !!! | AATTAATTTTAAAATGCCTC+TGG | + | chr8.4:69072993-69073012 | MS.gene80105:intron | 20.0% |
| !!! | ATTGAATTTTGTCAGTTTTT+TGG | - | chr8.4:69072027-69072046 | None:intergenic | 20.0% |
| !!! | GCAAAATAGTATATTTCTAT+TGG | + | chr8.4:69073158-69073177 | MS.gene80105:intron | 20.0% |
| ! | ATTTCTCTTATAATTGAGAC+CGG | + | chr8.4:69073113-69073132 | MS.gene80105:intron | 25.0% |
| ! | CCTAATATGAAACAAAAGTT+TGG | - | chr8.4:69072766-69072785 | None:intergenic | 25.0% |
| ! | CTTTCAAAGAAAACTATTGT+TGG | - | chr8.4:69072866-69072885 | None:intergenic | 25.0% |
| ! | GTGTAAAACTATACAATGTA+CGG | - | chr8.4:69072929-69072948 | None:intergenic | 25.0% |
| ! | TCTTTAATAAAAAAGACCAG+AGG | - | chr8.4:69073012-69073031 | None:intergenic | 25.0% |
| !! | AGTTTGGTAATTCATAATAG+TGG | - | chr8.4:69072750-69072769 | None:intergenic | 25.0% |
| !!! | ATTTCTATTGGTGTTTTTGA+AGG | + | chr8.4:69073170-69073189 | MS.gene80105:intron | 25.0% |
| !!! | CCAAACTTTTGTTTCATATT+AGG | + | chr8.4:69072763-69072782 | MS.gene80105:intron | 25.0% |
| !!! | TCAAACTCACGTTTTTTTAA+AGG | - | chr8.4:69073286-69073305 | None:intergenic | 25.0% |
| AAACTGACAAAATTCAATGG+CGG | + | chr8.4:69072029-69072048 | MS.gene80105:CDS | 30.0% | |
| AACAAAAGTTATGGATATGG+TGG | + | chr8.4:69073637-69073656 | MS.gene80105:CDS | 30.0% | |
| ACAAAAGTTATGGATATGGT+GGG | + | chr8.4:69073638-69073657 | MS.gene80105:CDS | 30.0% | |
| AGTATCTCTAAGTTTATCAG+TGG | + | chr8.4:69072674-69072693 | MS.gene80105:CDS | 30.0% | |
| ATTCTCAACTGCTTTCAAAT+CGG | - | chr8.4:69072468-69072487 | None:intergenic | 30.0% | |
| ! | TTGCAAAACTATGCTCATTT+TGG | + | chr8.4:69073715-69073734 | MS.gene80105:CDS | 30.0% |
| ! | TTTGAAACCTTGAAAATGAC+AGG | + | chr8.4:69073361-69073380 | MS.gene80105:intron | 30.0% |
| !! | AAGTTTTGTGAATGCATTGA+TGG | + | chr8.4:69073402-69073421 | MS.gene80105:CDS | 30.0% |
| !! | AGTTTTGTGAATGCATTGAT+GGG | + | chr8.4:69073403-69073422 | MS.gene80105:CDS | 30.0% |
| !! | GTTTTATGGCTGTTAGTTTA+GGG | + | chr8.4:69073737-69073756 | MS.gene80105:CDS | 30.0% |
| !!! | CTATGCTCATTTTGGTTTTA+TGG | + | chr8.4:69073723-69073742 | MS.gene80105:CDS | 30.0% |
| !!! | GTTGTACACTTTATTTTGAG+AGG | - | chr8.4:69073336-69073355 | None:intergenic | 30.0% |
| ACAGTTCAAATGCTACCTTA+GGG | - | chr8.4:69073468-69073487 | None:intergenic | 35.0% | |
| AGTGGTCACAATTATGTGAA+AGG | - | chr8.4:69072732-69072751 | None:intergenic | 35.0% | |
| AGTTGGATACATTGGAACAT+TGG | + | chr8.4:69073864-69073883 | MS.gene80105:CDS | 35.0% | |
| ATCTCTAAGTTTATCAGTGG+TGG | + | chr8.4:69072677-69072696 | MS.gene80105:CDS | 35.0% | |
| CATGAACTGTTGAAATCCAT+AGG | + | chr8.4:69073613-69073632 | MS.gene80105:CDS | 35.0% | |
| CTGTAACAAAACTGCAGAAA+TGG | - | chr8.4:69072327-69072346 | None:intergenic | 35.0% | |
| CTTCAAGTACTCTTTATGGT+GGG | + | chr8.4:69072375-69072394 | MS.gene80105:CDS | 35.0% | |
| GGATATGTCAACAAAAGTTG+TGG | - | chr8.4:69072447-69072466 | None:intergenic | 35.0% | |
| GGCAACAAAAGTTATGGATA+TGG | + | chr8.4:69073634-69073653 | MS.gene80105:CDS | 35.0% | |
| TAACAAAACTGCAGAAATGG+CGG | - | chr8.4:69072324-69072343 | None:intergenic | 35.0% | |
| TCCATAGGCAACAAAAGTTA+TGG | + | chr8.4:69073628-69073647 | MS.gene80105:CDS | 35.0% | |
| TTGAGAATGCAATTGTGGAA+GGG | + | chr8.4:69072480-69072499 | MS.gene80105:CDS | 35.0% | |
| ! | AAAATATTTGCTGGAGAGCT+TGG | + | chr8.4:69072179-69072198 | MS.gene80105:CDS | 35.0% |
| ! | AATGCATTGATGGGAATTCA+AGG | + | chr8.4:69073412-69073431 | MS.gene80105:CDS | 35.0% |
| ! | GATACGTTGGCTAATGTTAA+TGG | + | chr8.4:69071951-69071970 | MS.gene80105:CDS | 35.0% |
| ! | TCCATAACTTTTGTTGCCTA+TGG | - | chr8.4:69073632-69073651 | None:intergenic | 35.0% |
| !! | GGTTTTATGGCTGTTAGTTT+AGG | + | chr8.4:69073736-69073755 | MS.gene80105:CDS | 35.0% |
| !!! | AATATTTTGCGGAGAGTATC+TGG | - | chr8.4:69072167-69072186 | None:intergenic | 35.0% |
| ACTACCAGAGCAAGACATTA+GGG | - | chr8.4:69073773-69073792 | None:intergenic | 40.0% | |
| ACTCTCCGCAAAATATTTGC+TGG | + | chr8.4:69072170-69072189 | MS.gene80105:CDS | 40.0% | |
| AGAAAGCAACATAGGAGCAA+AGG | - | chr8.4:69072621-69072640 | None:intergenic | 40.0% | |
| AGCAGTTGAGAATGCAATTG+TGG | + | chr8.4:69072475-69072494 | MS.gene80105:CDS | 40.0% | |
| AGCTAGGATTGCACACAAAA+AGG | + | chr8.4:69072571-69072590 | MS.gene80105:CDS | 40.0% | |
| AGGATGTCAGTTGGATACAT+TGG | + | chr8.4:69073856-69073875 | MS.gene80105:CDS | 40.0% | |
| GACAGTTCAAATGCTACCTT+AGG | - | chr8.4:69073469-69073488 | None:intergenic | 40.0% | |
| GATTTCAACAGTTCATGCTG+TGG | - | chr8.4:69073610-69073629 | None:intergenic | 40.0% | |
| GCAACCAGGCTCAAAAAATT+AGG | + | chr8.4:69073550-69073569 | MS.gene80105:CDS | 40.0% | |
| GCTAGGATTGCACACAAAAA+GGG | + | chr8.4:69072572-69072591 | MS.gene80105:CDS | 40.0% | |
| GCTTCAAGTACTCTTTATGG+TGG | + | chr8.4:69072374-69072393 | MS.gene80105:CDS | 40.0% | |
| GTGGCTTCAAGTACTCTTTA+TGG | + | chr8.4:69072371-69072390 | MS.gene80105:CDS | 40.0% | |
| GTTGAGAATGCAATTGTGGA+AGG | + | chr8.4:69072479-69072498 | MS.gene80105:CDS | 40.0% | |
| TACTACCAGAGCAAGACATT+AGG | - | chr8.4:69073774-69073793 | None:intergenic | 40.0% | |
| TCTAAGTTTATCAGTGGTGG+TGG | + | chr8.4:69072680-69072699 | MS.gene80105:CDS | 40.0% | |
| TCTTGCAGCATTTCTTTGTG+AGG | + | chr8.4:69072408-69072427 | MS.gene80105:CDS | 40.0% | |
| TGCAAATCCAAGCTTGAATG+TGG | + | chr8.4:69072532-69072551 | MS.gene80105:CDS | 40.0% | |
| ! | GCTCTCCAGCAAATATTTTG+CGG | - | chr8.4:69072178-69072197 | None:intergenic | 40.0% |
| ! | GGGATTCTTTGTGTTGACAT+GGG | + | chr8.4:69073658-69073677 | MS.gene80105:CDS | 40.0% |
| ! | TGGGATTCTTTGTGTTGACA+TGG | + | chr8.4:69073657-69073676 | MS.gene80105:CDS | 40.0% |
| !!! | GAGTCCTAATTTTTTGAGCC+TGG | - | chr8.4:69073557-69073576 | None:intergenic | 40.0% |
| AAAATGACAGGAGCTGTGTG+TGG | + | chr8.4:69073373-69073392 | MS.gene80105:intron | 45.0% | |
| AAATGACAGGAGCTGTGTGT+GGG | + | chr8.4:69073374-69073393 | MS.gene80105:intron | 45.0% | |
| AAGTAGTGAGCTGAATGAGG+AGG | + | chr8.4:69073798-69073817 | MS.gene80105:CDS | 45.0% | |
| ACACAAAAAGGGAGTGACTG+TGG | + | chr8.4:69072583-69072602 | MS.gene80105:CDS | 45.0% | |
| ACGGCTGTAGACGTAGTAAT+TGG | - | chr8.4:69072213-69072232 | None:intergenic | 45.0% | |
| AGAACACAGTCATCGTGCAT+TGG | + | chr8.4:69073522-69073541 | MS.gene80105:CDS | 45.0% | |
| ATGAATTTGGCGAACATGGC+GGG | + | chr8.4:69072096-69072115 | MS.gene80105:CDS | 45.0% | |
| CACAAGTAGTGAGCTGAATG+AGG | + | chr8.4:69073795-69073814 | MS.gene80105:CDS | 45.0% | |
| CATGAATTTGGCGAACATGG+CGG | + | chr8.4:69072095-69072114 | MS.gene80105:CDS | 45.0% | |
| CATGCTGTGGATGATCTTCA+AGG | - | chr8.4:69073597-69073616 | None:intergenic | 45.0% | |
| CTCGAAAACCCTGTTGTTGA+GGG | + | chr8.4:69071993-69072012 | MS.gene80105:CDS | 45.0% | |
| GAAACCCTAATGTCTTGCTC+TGG | + | chr8.4:69073766-69073785 | MS.gene80105:CDS | 45.0% | |
| GACTGTGTTCTTTCATGCGA+AGG | - | chr8.4:69073513-69073532 | None:intergenic | 45.0% | |
| GCTACCTTAGGGTTCATTGT+TGG | - | chr8.4:69073457-69073476 | None:intergenic | 45.0% | |
| GTGCATTGGAATTTGCAACC+AGG | + | chr8.4:69073536-69073555 | MS.gene80105:CDS | 45.0% | |
| TCAGAGAGAATCCCACACTT+GGG | + | chr8.4:69073487-69073506 | MS.gene80105:CDS | 45.0% | |
| TGACATGGGAACAGTGGAAA+AGG | + | chr8.4:69073672-69073691 | MS.gene80105:CDS | 45.0% | |
| TTGGAACATTGGAGCAGAAG+TGG | + | chr8.4:69073875-69073894 | MS.gene80105:CDS | 45.0% | |
| TTGTTACAGCTCTGCAGTCA+CGG | + | chr8.4:69072338-69072357 | MS.gene80105:CDS | 45.0% | |
| ! | AGAAATGCTGCAAGAGTGCA+TGG | - | chr8.4:69072403-69072422 | None:intergenic | 45.0% |
| ! | GAAATGCTGCAAGAGTGCAT+GGG | - | chr8.4:69072402-69072421 | None:intergenic | 45.0% |
| ! | GTATTGGCCACATTCAAGCT+TGG | - | chr8.4:69072542-69072561 | None:intergenic | 45.0% |
| ! | TTGTGTTGACATGGGAACAG+TGG | + | chr8.4:69073666-69073685 | MS.gene80105:CDS | 45.0% |
| !! | GAGAGTATCTGGTTCCATGA+CGG | - | chr8.4:69072156-69072175 | None:intergenic | 45.0% |
| !!! | CACAGCTCCTGTCATTTTCA+AGG | - | chr8.4:69073371-69073390 | None:intergenic | 45.0% |
| !! | TTAAAATTAATTATATGATT+TGG | - | chr8.4:69072985-69073004 | None:intergenic | 5.0% |
| AGAGTCTGACATAGACCCAG+AGG | + | chr8.4:69072052-69072071 | MS.gene80105:CDS | 50.0% | |
| CAAAAAGGGAGTGACTGTGG+TGG | + | chr8.4:69072586-69072605 | MS.gene80105:CDS | 50.0% | |
| CAATCTCAGCCGTAAGATGG+CGG | + | chr8.4:69072253-69072272 | MS.gene80105:CDS | 50.0% | |
| CCAATACTCCTGAGCTAGCT+AGG | + | chr8.4:69072555-69072574 | MS.gene80105:CDS | 50.0% | |
| CCATCTTACGGCTGAGATTG+AGG | - | chr8.4:69072253-69072272 | None:intergenic | 50.0% | |
| CCTCAATCTCAGCCGTAAGA+TGG | + | chr8.4:69072250-69072269 | MS.gene80105:CDS | 50.0% | |
| CCTCGAAAACCCTGTTGTTG+AGG | + | chr8.4:69071992-69072011 | MS.gene80105:CDS | 50.0% | |
| CGAGCAGGAGAAAGCAACAT+AGG | - | chr8.4:69072629-69072648 | None:intergenic | 50.0% | |
| CGCCATGAATTTGGCGAACA+TGG | + | chr8.4:69072092-69072111 | MS.gene80105:CDS | 50.0% | |
| CGCCATGTTCGCCAAATTCA+TGG | - | chr8.4:69072097-69072116 | None:intergenic | 50.0% | |
| CGTCTTTGCCCTCAACAACA+GGG | - | chr8.4:69072004-69072023 | None:intergenic | 50.0% | |
| CTTACGGCTGAGATTGAGGA+CGG | - | chr8.4:69072249-69072268 | None:intergenic | 50.0% | |
| GCCAAATTCATGGCGAGCAT+TGG | - | chr8.4:69072087-69072106 | None:intergenic | 50.0% | |
| GCCAATGCTCGCCATGAATT+TGG | + | chr8.4:69072083-69072102 | MS.gene80105:CDS | 50.0% | |
| GGACTCAATGTGATCTACCC+TGG | + | chr8.4:69073571-69073590 | MS.gene80105:CDS | 50.0% | |
| GTCAGAGAGAATCCCACACT+TGG | + | chr8.4:69073486-69073505 | MS.gene80105:CDS | 50.0% | |
| GTGGATGATCTTCAAGGCCA+GGG | - | chr8.4:69073591-69073610 | None:intergenic | 50.0% | |
| TGAATTTGGCGAACATGGCG+GGG | + | chr8.4:69072097-69072116 | MS.gene80105:CDS | 50.0% | |
| TGGTTCCATGACGGTGAATG+TGG | - | chr8.4:69072147-69072166 | None:intergenic | 50.0% | |
| TGTGCAATCCTAGCTAGCTC+AGG | - | chr8.4:69072566-69072585 | None:intergenic | 50.0% | |
| TGTGGATGATCTTCAAGGCC+AGG | - | chr8.4:69073592-69073611 | None:intergenic | 50.0% | |
| TTGCTTTCTCCTGCTCGTCT+TGG | + | chr8.4:69072632-69072651 | MS.gene80105:CDS | 50.0% | |
| ! | AGGAGGAACAGAAGCTTGCT+GGG | + | chr8.4:69073815-69073834 | MS.gene80105:CDS | 50.0% |
| ! | CATGCCACTGGCTGTACAAT+AGG | - | chr8.4:69072300-69072319 | None:intergenic | 50.0% |
| ! | CCTAGCTAGCTCAGGAGTAT+TGG | - | chr8.4:69072558-69072577 | None:intergenic | 50.0% |
| ! | CCTCAACAACAGGGTTTTCG+AGG | - | chr8.4:69071995-69072014 | None:intergenic | 50.0% |
| ! | CGGGGTTAACATGTCGATTG+AGG | + | chr8.4:69072115-69072134 | MS.gene80105:CDS | 50.0% |
| ! | GGTGGTGGTGACATTATTGC+AGG | + | chr8.4:69072695-69072714 | MS.gene80105:CDS | 50.0% |
| !! | AAGCTTGCTGGGATTACACC+AGG | + | chr8.4:69073826-69073845 | MS.gene80105:CDS | 50.0% |
| !! | AGCTTGCTGGGATTACACCA+GGG | + | chr8.4:69073827-69073846 | MS.gene80105:CDS | 50.0% |
| !! | GGACGGTTGGGTTGAAATGA+CGG | - | chr8.4:69072232-69072251 | None:intergenic | 50.0% |
| AAGGAGCCATGATGCTGCTG+GGG | + | chr8.4:69073431-69073450 | MS.gene80105:CDS | 55.0% | |
| ACATCTGCACCAAGACGAGC+AGG | - | chr8.4:69072644-69072663 | None:intergenic | 55.0% | |
| ACTGACATCCTCACCATCCC+TGG | - | chr8.4:69073847-69073866 | None:intergenic | 55.0% | |
| CAAGGAGCCATGATGCTGCT+GGG | + | chr8.4:69073430-69073449 | MS.gene80105:CDS | 55.0% | |
| CATGACGGTGAATGTGGCAG+AGG | - | chr8.4:69072141-69072160 | None:intergenic | 55.0% | |
| CTCTGCCACATTCACCGTCA+TGG | + | chr8.4:69072139-69072158 | MS.gene80105:CDS | 55.0% | |
| GAGGAGGAACAGAAGCTTGC+TGG | + | chr8.4:69073814-69073833 | MS.gene80105:CDS | 55.0% | |
| GCGTCTTTGCCCTCAACAAC+AGG | - | chr8.4:69072005-69072024 | None:intergenic | 55.0% | |
| GGATTACACCAGGGATGGTG+AGG | + | chr8.4:69073836-69073855 | MS.gene80105:CDS | 55.0% | |
| GGCTGAGATTGAGGACGGTT+GGG | - | chr8.4:69072244-69072263 | None:intergenic | 55.0% | |
| GGGATGGTGAGGATGTCAGT+TGG | + | chr8.4:69073847-69073866 | MS.gene80105:CDS | 55.0% | |
| GGGGCCAACAATGAACCCTA+AGG | + | chr8.4:69073450-69073469 | MS.gene80105:CDS | 55.0% | |
| TCAAGGAGCCATGATGCTGC+TGG | + | chr8.4:69073429-69073448 | MS.gene80105:CDS | 55.0% | |
| TCATGCGAAGGCCCAAGTGT+GGG | - | chr8.4:69073501-69073520 | None:intergenic | 55.0% | |
| TGCTGGGATTACACCAGGGA+TGG | + | chr8.4:69073831-69073850 | MS.gene80105:CDS | 55.0% | |
| TTACAGCTCTGCAGTCACGG+CGG | + | chr8.4:69072341-69072360 | MS.gene80105:CDS | 55.0% | |
| TTCATGCGAAGGCCCAAGTG+TGG | - | chr8.4:69073502-69073521 | None:intergenic | 55.0% | |
| ! | GCCACTGGCTGTACAATAGG+CGG | - | chr8.4:69072297-69072316 | None:intergenic | 55.0% |
| !! | AGAAATGGCGGACATGCCAC+TGG | - | chr8.4:69072312-69072331 | None:intergenic | 55.0% |
| CAGTCACGGCGGACATGTTG+TGG | + | chr8.4:69072352-69072371 | MS.gene80105:CDS | 60.0% | |
| CGGCTGAGATTGAGGACGGT+TGG | - | chr8.4:69072245-69072264 | None:intergenic | 60.0% | |
| CTTCGAGGGCCGCCATCTTA+CGG | - | chr8.4:69072265-69072284 | None:intergenic | 60.0% | |
| GCCGCCTATTGTACAGCCAG+TGG | + | chr8.4:69072293-69072312 | MS.gene80105:CDS | 60.0% | |
| GGAGCAGAAGTGGAGTCAGC+TGG | + | chr8.4:69073885-69073904 | MS.gene80105:CDS | 60.0% | |
| GGCTGTACAATAGGCGGCCT+CGG | - | chr8.4:69072291-69072310 | None:intergenic | 60.0% | |
| TGTTGGCCCCAGCAGCATCA+TGG | - | chr8.4:69073440-69073459 | None:intergenic | 60.0% | |
| !! | ATGGCGAGCATTGGCGAGTG+CGG | - | chr8.4:69072078-69072097 | None:intergenic | 60.0% |
| CATTGGCGAGTGCGGCCTCT+GGG | - | chr8.4:69072070-69072089 | None:intergenic | 65.0% | |
| ! | CGTAAGATGGCGGCCCTCGA+AGG | + | chr8.4:69072263-69072282 | MS.gene80105:CDS | 65.0% |
| ! | GCATTGGCGAGTGCGGCCTC+TGG | - | chr8.4:69072071-69072090 | None:intergenic | 70.0% |
| !! | AGGCGGCCTCGGTGCCTTCG+AGG | - | chr8.4:69072280-69072299 | None:intergenic | 75.0% |
| !! | GGCGGCCTCGGTGCCTTCGA+GGG | - | chr8.4:69072279-69072298 | None:intergenic | 75.0% |
| !!! | GGCGGCCCTCGAAGGCACCG+AGG | + | chr8.4:69072271-69072290 | MS.gene80105:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 69071945 | 69073942 | 69071945 | ID=MS.gene80105 |
| chr8.4 | mRNA | 69071945 | 69073942 | 69071945 | ID=MS.gene80105.t1;Parent=MS.gene80105 |
| chr8.4 | exon | 69071945 | 69072716 | 69071945 | ID=MS.gene80105.t1.exon1;Parent=MS.gene80105.t1 |
| chr8.4 | CDS | 69071945 | 69072716 | 69071945 | ID=cds.MS.gene80105.t1;Parent=MS.gene80105.t1 |
| chr8.4 | exon | 69073383 | 69073942 | 69073383 | ID=MS.gene80105.t1.exon2;Parent=MS.gene80105.t1 |
| chr8.4 | CDS | 69073383 | 69073942 | 69073383 | ID=cds.MS.gene80105.t1;Parent=MS.gene80105.t1 |
| Gene Sequence |
| Protein sequence |
