Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80124.t1 | XP_013448489.1 | 88.4 | 397 | 45 | 1 | 1 | 396 | 6 | 402 | 2.50E-192 | 681.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80124.t1 | Q9S7T8 | 50.9 | 391 | 186 | 5 | 7 | 394 | 3 | 390 | 3.7e-104 | 379.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80124.t1 | Q2HSM8 | 88.4 | 397 | 45 | 1 | 1 | 396 | 6 | 402 | 1.8e-192 | 681.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene80124 | MS.gene045585 | PPI |
| MS.gene006610 | MS.gene80124 | PPI |
| MS.gene80124 | MS.gene065944 | PPI |
| MS.gene80124 | MS.gene031697 | PPI |
| MS.gene065945 | MS.gene80124 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80124.t1 | MTR_7g451890 | 89.169 | 397 | 42 | 1 | 1 | 396 | 6 | 402 | 0.0 | 689 |
| MS.gene80124.t1 | MTR_7g047780 | 87.909 | 397 | 47 | 1 | 1 | 396 | 6 | 402 | 0.0 | 676 |
| MS.gene80124.t1 | MTR_7g050750 | 85.354 | 396 | 57 | 1 | 2 | 396 | 1 | 396 | 0.0 | 660 |
| MS.gene80124.t1 | MTR_7g050810 | 83.503 | 394 | 64 | 1 | 4 | 396 | 11 | 404 | 0.0 | 641 |
| MS.gene80124.t1 | MTR_3g101180 | 64.987 | 397 | 132 | 3 | 5 | 394 | 2 | 398 | 1.06e-176 | 498 |
| MS.gene80124.t1 | MTR_8g461160 | 66.076 | 395 | 127 | 4 | 5 | 395 | 2 | 393 | 8.67e-175 | 493 |
| MS.gene80124.t1 | MTR_7g050830 | 78.438 | 320 | 37 | 3 | 4 | 302 | 11 | 319 | 8.93e-173 | 485 |
| MS.gene80124.t1 | MTR_3g101010 | 63.239 | 389 | 138 | 3 | 9 | 396 | 5 | 389 | 2.64e-168 | 476 |
| MS.gene80124.t1 | MTR_3g018740 | 63.104 | 393 | 133 | 6 | 7 | 395 | 3 | 387 | 1.76e-165 | 469 |
| MS.gene80124.t1 | MTR_3g101130 | 61.893 | 391 | 139 | 4 | 9 | 396 | 6 | 389 | 1.56e-163 | 464 |
| MS.gene80124.t1 | MTR_4g045707 | 61.697 | 389 | 142 | 4 | 9 | 396 | 6 | 388 | 2.89e-163 | 463 |
| MS.gene80124.t1 | MTR_8g027395 | 59.335 | 391 | 150 | 3 | 7 | 396 | 15 | 397 | 1.80e-158 | 452 |
| MS.gene80124.t1 | MTR_3g101030 | 57.855 | 401 | 144 | 5 | 15 | 396 | 35 | 429 | 3.47e-153 | 439 |
| MS.gene80124.t1 | MTR_3g048000 | 57.364 | 387 | 139 | 5 | 10 | 394 | 28 | 390 | 3.07e-149 | 428 |
| MS.gene80124.t1 | MTR_4g088525 | 60.055 | 363 | 138 | 2 | 33 | 394 | 11 | 367 | 1.86e-147 | 422 |
| MS.gene80124.t1 | MTR_2g046030 | 56.489 | 393 | 159 | 5 | 7 | 395 | 3 | 387 | 1.10e-146 | 421 |
| MS.gene80124.t1 | MTR_8g027420 | 56.266 | 391 | 151 | 4 | 7 | 396 | 4 | 375 | 2.48e-146 | 420 |
| MS.gene80124.t1 | MTR_2g045980 | 55.725 | 393 | 162 | 5 | 7 | 395 | 3 | 387 | 1.23e-144 | 416 |
| MS.gene80124.t1 | MTR_3g101050 | 57.841 | 389 | 132 | 6 | 13 | 394 | 33 | 396 | 2.31e-141 | 408 |
| MS.gene80124.t1 | MTR_3g101200 | 56.997 | 393 | 141 | 6 | 3 | 394 | 25 | 390 | 3.40e-141 | 407 |
| MS.gene80124.t1 | MTR_3g015620 | 53.015 | 398 | 152 | 7 | 4 | 395 | 11 | 379 | 4.47e-133 | 386 |
| MS.gene80124.t1 | MTR_4g088535 | 54.948 | 384 | 148 | 4 | 9 | 391 | 7 | 366 | 1.13e-132 | 385 |
| MS.gene80124.t1 | MTR_3g102920 | 54.663 | 386 | 132 | 7 | 13 | 394 | 62 | 408 | 7.77e-130 | 379 |
| MS.gene80124.t1 | MTR_3g101190 | 51.337 | 374 | 116 | 3 | 24 | 396 | 4 | 312 | 2.33e-123 | 359 |
| MS.gene80124.t1 | MTR_3g100995 | 62.162 | 259 | 87 | 3 | 141 | 396 | 14 | 264 | 1.16e-112 | 330 |
| MS.gene80124.t1 | MTR_3g018747 | 60.076 | 263 | 87 | 3 | 134 | 395 | 9 | 254 | 3.14e-103 | 306 |
| MS.gene80124.t1 | MTR_3g015760 | 59.316 | 263 | 101 | 3 | 134 | 395 | 23 | 280 | 4.91e-97 | 291 |
| MS.gene80124.t1 | MTR_3g100010 | 48.889 | 315 | 112 | 4 | 31 | 311 | 37 | 336 | 4.89e-93 | 283 |
| MS.gene80124.t1 | MTR_3g111160 | 60.268 | 224 | 83 | 3 | 175 | 396 | 1 | 220 | 1.02e-82 | 252 |
| MS.gene80124.t1 | MTR_3g100520 | 59.375 | 224 | 74 | 4 | 175 | 396 | 1 | 209 | 5.87e-82 | 250 |
| MS.gene80124.t1 | MTR_3g114310 | 40.157 | 381 | 203 | 10 | 33 | 396 | 38 | 410 | 7.17e-81 | 254 |
| MS.gene80124.t1 | MTR_3g101110 | 56.962 | 237 | 72 | 4 | 137 | 370 | 71 | 280 | 3.56e-77 | 240 |
| MS.gene80124.t1 | MTR_2g046410 | 56.808 | 213 | 84 | 2 | 187 | 395 | 140 | 348 | 1.33e-74 | 236 |
| MS.gene80124.t1 | MTR_3g099970 | 59.694 | 196 | 62 | 2 | 134 | 329 | 20 | 198 | 1.12e-73 | 228 |
| MS.gene80124.t1 | MTR_3g101150 | 64.557 | 158 | 52 | 2 | 240 | 394 | 1 | 157 | 1.04e-65 | 206 |
| MS.gene80124.t1 | MTR_3g101020 | 52.083 | 192 | 57 | 3 | 208 | 396 | 1 | 160 | 1.74e-58 | 188 |
| MS.gene80124.t1 | MTR_3g102870 | 53.939 | 165 | 76 | 0 | 197 | 361 | 1 | 165 | 4.91e-54 | 177 |
| MS.gene80124.t1 | MTR_3g111150 | 49.143 | 175 | 64 | 3 | 12 | 186 | 2 | 151 | 2.43e-49 | 164 |
| MS.gene80124.t1 | MTR_3g100990 | 55.118 | 127 | 54 | 2 | 9 | 134 | 5 | 129 | 6.45e-33 | 129 |
| MS.gene80124.t1 | MTR_3g101140 | 48.571 | 105 | 53 | 1 | 292 | 396 | 13 | 116 | 3.43e-21 | 88.6 |
| MS.gene80124.t1 | MTR_4g093550 | 47.126 | 87 | 44 | 1 | 7 | 93 | 4 | 88 | 4.30e-14 | 68.2 |
| MS.gene80124.t1 | MTR_6g046890 | 56.250 | 64 | 28 | 0 | 26 | 89 | 14 | 77 | 1.20e-13 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80124.t1 | AT1G47710 | 51.969 | 381 | 177 | 5 | 17 | 394 | 13 | 390 | 2.04e-132 | 385 |
| MS.gene80124.t1 | AT1G47710 | 51.969 | 381 | 177 | 5 | 17 | 394 | 40 | 417 | 1.31e-131 | 384 |
| MS.gene80124.t1 | AT2G26390 | 45.178 | 394 | 199 | 6 | 7 | 393 | 3 | 386 | 3.25e-115 | 341 |
| MS.gene80124.t1 | AT2G25240 | 46.547 | 391 | 194 | 7 | 7 | 393 | 3 | 382 | 1.24e-113 | 337 |
| MS.gene80124.t1 | AT3G45220 | 44.584 | 397 | 201 | 7 | 7 | 393 | 3 | 390 | 5.91e-113 | 336 |
| MS.gene80124.t1 | AT1G62170 | 44.557 | 395 | 184 | 7 | 7 | 393 | 64 | 431 | 4.49e-106 | 320 |
| MS.gene80124.t1 | AT1G64030 | 44.162 | 394 | 188 | 9 | 7 | 393 | 3 | 371 | 8.15e-100 | 302 |
| MS.gene80124.t1 | AT1G62170 | 41.121 | 428 | 184 | 8 | 7 | 393 | 64 | 464 | 8.82e-99 | 302 |
| MS.gene80124.t1 | AT2G14540 | 47.139 | 367 | 165 | 7 | 32 | 393 | 55 | 397 | 2.12e-98 | 299 |
| MS.gene80124.t1 | AT2G35580 | 44.262 | 366 | 166 | 10 | 39 | 393 | 33 | 371 | 1.14e-92 | 283 |
| MS.gene80124.t1 | AT1G64010 | 44.545 | 220 | 96 | 4 | 175 | 393 | 1 | 195 | 1.10e-59 | 192 |
| MS.gene80124.t1 | AT1G64010 | 44.390 | 205 | 88 | 4 | 190 | 393 | 2 | 181 | 5.68e-53 | 174 |
| MS.gene80124.t1 | AT1G63280 | 57.627 | 118 | 46 | 2 | 131 | 246 | 5 | 120 | 2.21e-36 | 129 |
| MS.gene80124.t1 | AT1G62160 | 38.798 | 183 | 85 | 3 | 213 | 393 | 61 | 218 | 1.16e-34 | 128 |
| MS.gene80124.t1 | AT1G51330 | 50.893 | 112 | 52 | 3 | 132 | 240 | 29 | 140 | 3.22e-25 | 102 |
| MS.gene80124.t1 | AT1G64020 | 34.862 | 109 | 69 | 2 | 17 | 124 | 13 | 120 | 9.53e-12 | 62.4 |
Find 0 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTATTTTTTTAGTAG+AGG | + | 50837:2187-2206 | MS.gene80124:intron | 10.0% |
| !!! | AAAACTTAAATTTTTCTGTT+TGG | - | 50837:3004-3023 | MS.gene80124:intergenic | 15.0% |
| !!! | ATTAGTAACAGTTTATTTTA+GGG | - | 50837:2803-2822 | MS.gene80124:intergenic | 15.0% |
| !!! | TATTAGTAACAGTTTATTTT+AGG | - | 50837:2804-2823 | MS.gene80124:intergenic | 15.0% |
| !! | AAAAATCAATAATGTGACTT+TGG | + | 50837:3217-3236 | MS.gene80124:intron | 20.0% |
| !! | AAAATATGACAAGGATAATT+AGG | + | 50837:3357-3376 | MS.gene80124:intron | 20.0% |
| !! | AAATATGACAAGGATAATTA+GGG | + | 50837:3358-3377 | MS.gene80124:intron | 20.0% |
| !! | ATTGATCTAGAAATTTGTAA+GGG | - | 50837:2959-2978 | MS.gene80124:intergenic | 20.0% |
| !! | ATTTGTATGTAATTGTACTA+TGG | - | 50837:2873-2892 | MS.gene80124:intergenic | 20.0% |
| !! | GAAACAAAGTTATATGTAAA+AGG | - | 50837:2982-3001 | MS.gene80124:intergenic | 20.0% |
| !! | GCTCATTCTATTAAAATAAT+AGG | + | 50837:2457-2476 | MS.gene80124:intron | 20.0% |
| !! | TTTGTATGTAATTGTACTAT+GGG | - | 50837:2872-2891 | MS.gene80124:intergenic | 20.0% |
| !!! | CAATCTTTTGAGAAATAAAT+TGG | - | 50837:2705-2724 | MS.gene80124:intergenic | 20.0% |
| !!! | TTTTCAATGCAAAAATTCTT+TGG | - | 50837:2677-2696 | MS.gene80124:intergenic | 20.0% |
| ! | AAAATGGTTATACCAATTAC+AGG | - | 50837:3384-3403 | MS.gene80124:intergenic | 25.0% |
| ! | ACATAAAGTTCTTGACTTAT+AGG | - | 50837:4254-4273 | MS.gene80124:intergenic | 25.0% |
| ! | GAATGAGCATATTGATATTT+AGG | - | 50837:2601-2620 | MS.gene80124:intergenic | 25.0% |
| ! | GATTGATCTAGAAATTTGTA+AGG | - | 50837:2960-2979 | MS.gene80124:intergenic | 25.0% |
| ! | GATTGGATTGTAATGTTAAT+AGG | - | 50837:2928-2947 | MS.gene80124:intergenic | 25.0% |
| ! | TCAAAGGAAATATTGAATCT+TGG | - | 50837:4149-4168 | MS.gene80124:intergenic | 25.0% |
| ! | TTATTTGTTCTCACAAGTTA+GGG | + | 50837:2145-2164 | MS.gene80124:intron | 25.0% |
| ! | TTGAACTCGTTAGATTTAAA+AGG | - | 50837:2491-2510 | MS.gene80124:intergenic | 25.0% |
| ! | TTTATTTGTTCTCACAAGTT+AGG | + | 50837:2144-2163 | MS.gene80124:intron | 25.0% |
| ! | TTTGATTGATAAAGTAGCTT+CGG | + | 50837:4061-4080 | MS.gene80124:CDS | 25.0% |
| !! | GTTTGATACTTTGAAAACAA+AGG | + | 50837:3854-3873 | MS.gene80124:CDS | 25.0% |
| !! | TTTTCAACACAAAGTTTGTA+AGG | - | 50837:2532-2551 | MS.gene80124:intergenic | 25.0% |
| !!! | ACAAGTTTGTTTTTCACAAT+TGG | - | 50837:3161-3180 | MS.gene80124:intergenic | 25.0% |
| !!! | CTTTTCTTTGAGATTTTGAT+TGG | - | 50837:1813-1832 | MS.gene80124:intergenic | 25.0% |
| !!! | TACAATTGATACTGATTTGA+AGG | + | 50837:3683-3702 | MS.gene80124:intron | 25.0% |
| AAATGTAAATAGAGAACGCA+CGG | - | 50837:4010-4029 | MS.gene80123:intergenic | 30.0% | |
| AATAAACCTATCCAGCTAAT+TGG | - | 50837:3518-3537 | MS.gene80124:intergenic | 30.0% | |
| ACTCGTTAGATTTAACATGA+TGG | - | 50837:2430-2449 | MS.gene80124:intergenic | 30.0% | |
| ACTGTCTACAAAATATGACA+AGG | + | 50837:3348-3367 | MS.gene80124:intron | 30.0% | |
| ACTTGTGTATATATAGTGCA+AGG | + | 50837:3175-3194 | MS.gene80124:intron | 30.0% | |
| AGGTTTAATGTCTCAGAAAA+TGG | - | 50837:3400-3419 | MS.gene80124:intergenic | 30.0% | |
| AGTAGTCATAAGTTGTTTGA+AGG | - | 50837:2071-2090 | MS.gene80124:intergenic | 30.0% | |
| AGTCAAGAACTTTATGTTTC+CGG | + | 50837:4257-4276 | MS.gene80124:CDS | 30.0% | |
| AGTCCATTATTGTGCTTTAA+AGG | - | 50837:2899-2918 | MS.gene80124:intergenic | 30.0% | |
| CTCTGATCAGAAACAAAAAA+GGG | - | 50837:4415-4434 | MS.gene80124:intergenic | 30.0% | |
| GAGAGAAGAAGTGAATTTAT+GGG | + | 50837:3716-3735 | MS.gene80124:CDS | 30.0% | |
| GCATTGCAAAATAAACCAAT+AGG | - | 50837:3456-3475 | MS.gene80124:intergenic | 30.0% | |
| GGATTGTAATGTTAATAGGT+AGG | - | 50837:2924-2943 | MS.gene80124:intergenic | 30.0% | |
| GTTGCTAAAGAAATTAGGAT+TGG | + | 50837:4184-4203 | MS.gene80124:CDS | 30.0% | |
| TATCTTAATATGTGCCCTAA+GGG | - | 50837:2654-2673 | MS.gene80124:intergenic | 30.0% | |
| TATGAAAGACAGCACAAAAA+CGG | - | 50837:2287-2306 | MS.gene80124:intergenic | 30.0% | |
| TCTCTGATCAGAAACAAAAA+AGG | - | 50837:4416-4435 | MS.gene80124:intergenic | 30.0% | |
| TCTGAGTTGCTAAAGAAATT+AGG | + | 50837:4179-4198 | MS.gene80124:CDS | 30.0% | |
| TTATTCTTGCTGGTCATAAA+GGG | - | 50837:3921-3940 | MS.gene80124:intergenic | 30.0% | |
| TTCATTGAAGTAAACGAAGA+AGG | + | 50837:4296-4315 | MS.gene80124:CDS | 30.0% | |
| TTCTCAGTTGCTTGATTAAT+TGG | + | 50837:2564-2583 | MS.gene80124:intron | 30.0% | |
| TTGATTGGATAACAAGTGTT+TGG | - | 50837:1798-1817 | MS.gene80124:intergenic | 30.0% | |
| TTGTATTCAAAATGAGTCCA+AGG | - | 50837:3420-3439 | MS.gene80124:intergenic | 30.0% | |
| TTTATTCTTGCTGGTCATAA+AGG | - | 50837:3922-3941 | MS.gene80124:intergenic | 30.0% | |
| ! | AAACCTTAACATGTGCTATT+AGG | + | 50837:2761-2780 | MS.gene80124:intron | 30.0% |
| ! | AACCTTAACATGTGCTATTA+GGG | + | 50837:2762-2781 | MS.gene80124:intron | 30.0% |
| ! | AACTACAGTTTTCAAACAAG+TGG | - | 50837:3252-3271 | MS.gene80124:intergenic | 30.0% |
| ! | ATTTTTGAACAGACCATGAT+AGG | + | 50837:2399-2418 | MS.gene80124:intron | 30.0% |
| !! | TATGATTTTGACCTTCTCAA+TGG | + | 50837:3879-3898 | MS.gene80124:CDS | 30.0% |
| !!! | ATTGGCTTTACCTTTTTCTA+TGG | + | 50837:4202-4221 | MS.gene80124:CDS | 30.0% |
| !!! | CATAAGTTAGTTTTCAGTGT+TGG | + | 50837:3093-3112 | MS.gene80124:intron | 30.0% |
| !!! | TTGGCTTTACCTTTTTCTAT+GGG | + | 50837:4203-4222 | MS.gene80124:CDS | 30.0% |
| !!! | TTTTCTGAGACATTAAACCT+TGG | + | 50837:3400-3419 | MS.gene80124:intron | 30.0% |
| AACCATACTCTTTGTTGGAA+AGG | + | 50837:4448-4467 | MS.gene80124:CDS | 35.0% | |
| AACCTTTCCAACAAAGAGTA+TGG | - | 50837:4453-4472 | MS.gene80124:intergenic | 35.0% | |
| AAGCGCTAAAGATTACCTAT+TGG | + | 50837:3438-3457 | MS.gene80124:intron | 35.0% | |
| AGCTAATTGGCAAGACATAT+AGG | - | 50837:3505-3524 | MS.gene80124:intergenic | 35.0% | |
| ATTCAAGATCTTCTTCCATG+CGG | + | 50837:3762-3781 | MS.gene80124:CDS | 35.0% | |
| CCATATACCAAAAAGATTGC+AGG | + | 50837:3030-3049 | MS.gene80124:intron | 35.0% | |
| CCTTATAAACAAGGCAAAGA+TGG | + | 50837:3984-4003 | MS.gene80124:CDS | 35.0% | |
| CGAGAGAAGAAGTGAATTTA+TGG | + | 50837:3715-3734 | MS.gene80124:CDS | 35.0% | |
| CTATGGGTTTAAGCTCAATA+TGG | - | 50837:2856-2875 | MS.gene80124:intergenic | 35.0% | |
| CTTGTTTATAAGGAAGACCA+AGG | - | 50837:3977-3996 | MS.gene80124:intergenic | 35.0% | |
| GATGAACTGTTTATTCTTGC+TGG | - | 50837:3931-3950 | MS.gene80124:intergenic | 35.0% | |
| GCAAATGCACTATACTTCAA+AGG | + | 50837:3816-3835 | MS.gene80124:CDS | 35.0% | |
| GGATCAATAAACCTAACTAC+TGG | + | 50837:3114-3133 | MS.gene80124:intron | 35.0% | |
| GTATCTTAATATGTGCCCTA+AGG | - | 50837:2655-2674 | MS.gene80124:intergenic | 35.0% | |
| GTCATAAGTTGTTTGAAGGA+AGG | - | 50837:2067-2086 | MS.gene80124:intergenic | 35.0% | |
| TAATCAAGCAACTGAGAAAG+AGG | - | 50837:2562-2581 | MS.gene80124:intergenic | 35.0% | |
| TATATGTCTTGCCAATTAGC+TGG | + | 50837:3504-3523 | MS.gene80124:intron | 35.0% | |
| TATGGGAGGTTTGACAAAAA+TGG | + | 50837:4220-4239 | MS.gene80124:CDS | 35.0% | |
| TATTCTTGCTGGTCATAAAG+GGG | - | 50837:3920-3939 | MS.gene80124:intergenic | 35.0% | |
| TCAACACAAAGTTTGTAAGG+CGG | - | 50837:2529-2548 | MS.gene80124:intergenic | 35.0% | |
| TCTCACTTTATCCAGTAGTT+AGG | - | 50837:3128-3147 | MS.gene80124:intergenic | 35.0% | |
| TGATCAGAAACAAAAAAGGG+TGG | - | 50837:4412-4431 | MS.gene80124:intergenic | 35.0% | |
| TTCTTCCTGACGAAAAAGAT+GGG | + | 50837:4030-4049 | MS.gene80124:CDS | 35.0% | |
| TTGTAAGGGAGAAACATGAT+TGG | - | 50837:2945-2964 | MS.gene80124:intergenic | 35.0% | |
| TTTCTTCCTGACGAAAAAGA+TGG | + | 50837:4029-4048 | MS.gene80124:CDS | 35.0% | |
| ! | AAGCCCTTTTGTCTTCTTTT+CGG | - | 50837:3742-3761 | MS.gene80124:intergenic | 35.0% |
| ! | ACTATACTTCAAAGGAGTGT+GGG | + | 50837:3824-3843 | MS.gene80124:CDS | 35.0% |
| ! | CTTGGTCTTCCTTATAAACA+AGG | + | 50837:3975-3994 | MS.gene80124:CDS | 35.0% |
| ! | GCAAAATGAAAGCATGGAAA+GGG | - | 50837:3067-3086 | MS.gene80124:intergenic | 35.0% |
| ! | GTTTTTGTGCTGTCTTTCAT+AGG | + | 50837:2286-2305 | MS.gene80124:intron | 35.0% |
| !! | CCATCTTTGCCTTGTTTATA+AGG | - | 50837:3987-4006 | MS.gene80124:intergenic | 35.0% |
| !! | CCTGCAATCTTTTTGGTATA+TGG | - | 50837:3033-3052 | MS.gene80124:intergenic | 35.0% |
| !! | GAAAGACTTCTGAAATATGC+CGG | - | 50837:4279-4298 | MS.gene80124:intergenic | 35.0% |
| !! | GTGCCTTTAAAGCACAATAA+TGG | + | 50837:2893-2912 | MS.gene80124:intron | 35.0% |
| !!! | GAGAGAAGTTGTTTTTGAGT+GGG | - | 50837:1902-1921 | MS.gene80124:intergenic | 35.0% |
| !!! | TTCGATGGTTTTAAAGTCCT+TGG | + | 50837:3957-3976 | MS.gene80124:CDS | 35.0% |
| AAGGTTGTCAATCCTCTTGA+TGG | + | 50837:4467-4486 | MS.gene80124:CDS | 40.0% | |
| AAGTCAAAGTAGGCAAGTTC+AGG | + | 50837:4120-4139 | MS.gene80124:CDS | 40.0% | |
| AGAAACTCACACACAACTTC+TGG | + | 50837:2218-2237 | MS.gene80124:intron | 40.0% | |
| AGGTTGTCAATCCTCTTGAT+GGG | + | 50837:4468-4487 | MS.gene80124:CDS | 40.0% | |
| AGTGGAACCATACTCTTTGT+TGG | + | 50837:4443-4462 | MS.gene80124:CDS | 40.0% | |
| CACTATACTTCAAAGGAGTG+TGG | + | 50837:3823-3842 | MS.gene80124:CDS | 40.0% | |
| CAGAAACAAAAAAGGGTGGT+CGG | - | 50837:4408-4427 | MS.gene80124:intergenic | 40.0% | |
| CAGTTCATCAGTTCTTTCGA+TGG | + | 50837:3942-3961 | MS.gene80124:CDS | 40.0% | |
| CATTGACGTAAGACAAGCAA+GGG | - | 50837:2012-2031 | MS.gene80124:intergenic | 40.0% | |
| CTCAGAAGCTTCAATCTCAA+AGG | - | 50837:4165-4184 | MS.gene80124:intergenic | 40.0% | |
| CTGATCAGAGAAGAGTTTAG+TGG | + | 50837:4425-4444 | MS.gene80124:CDS | 40.0% | |
| GGATAATTAGGGCCTGTAAT+TGG | + | 50837:3369-3388 | MS.gene80124:intron | 40.0% | |
| GTCAAACCTCCCATAGAAAA+AGG | - | 50837:4215-4234 | MS.gene80124:intergenic | 40.0% | |
| TCTCAATGGCAAGTCAGTAA+AGG | + | 50837:3893-3912 | MS.gene80124:CDS | 40.0% | |
| TGCCCTAATAGCACATGTTA+AGG | - | 50837:2767-2786 | MS.gene80124:intergenic | 40.0% | |
| TGTTTGAAGGAAGGTTGAAG+AGG | - | 50837:2058-2077 | MS.gene80124:intergenic | 40.0% | |
| TTCAAGATCTTCTTCCATGC+GGG | + | 50837:3763-3782 | MS.gene80124:CDS | 40.0% | |
| TTGCTTCCATACACCACATA+TGG | - | 50837:3568-3587 | MS.gene80124:intergenic | 40.0% | |
| ! | AAATGCTAACTTGTGCCCTT+AGG | + | 50837:2636-2655 | MS.gene80124:intron | 40.0% |
| ! | AATGCTAACTTGTGCCCTTA+GGG | + | 50837:2637-2656 | MS.gene80124:intron | 40.0% |
| ! | AGAAACAAGGTGAGAGCATA+AGG | - | 50837:1960-1979 | MS.gene80124:intergenic | 40.0% |
| ! | AGCTTCGGATTCTGAGTTTT+TGG | + | 50837:4076-4095 | MS.gene80124:CDS | 40.0% |
| ! | ATGGTGATGCAGAATCTCAT+CGG | + | 50837:1731-1750 | MS.gene80124:CDS | 40.0% |
| ! | CGCAAAATGAAAGCATGGAA+AGG | - | 50837:3068-3087 | MS.gene80124:intergenic | 40.0% |
| ! | CTTGTTTCTTCTGTGCTCTT+CGG | + | 50837:1971-1990 | MS.gene80124:CDS | 40.0% |
| ! | GCATAAGGATTTGAGATCAC+CGG | - | 50837:1945-1964 | MS.gene80124:intergenic | 40.0% |
| ! | GCTTTACCTTTTTCTATGGG+AGG | + | 50837:4206-4225 | MS.gene80124:CDS | 40.0% |
| ! | GTCTGAACCTGCAATCTTTT+TGG | - | 50837:3040-3059 | MS.gene80124:intergenic | 40.0% |
| ! | TGCAGTTGATTTCGTCAACA+AGG | + | 50837:2111-2130 | MS.gene80124:CDS | 40.0% |
| ! | TGTTCATGGAAACGTTGGTT+AGG | - | 50837:1772-1791 | MS.gene80124:intergenic | 40.0% |
| ! | TTGTTTCTTCTGTGCTCTTC+GGG | + | 50837:1972-1991 | MS.gene80124:CDS | 40.0% |
| !! | CAAGTGTTTGGTGATGTTCA+TGG | - | 50837:1786-1805 | MS.gene80124:intergenic | 40.0% |
| !! | CATGATGGATCAACCTATCA+TGG | - | 50837:2415-2434 | MS.gene80124:intergenic | 40.0% |
| !! | TTACTGACTTGCCATTGAGA+AGG | - | 50837:3893-3912 | MS.gene80124:intergenic | 40.0% |
| !!! | GGAGAGAAGTTGTTTTTGAG+TGG | - | 50837:1903-1922 | MS.gene80124:intergenic | 40.0% |
| CACCACATATGGAGAGAGTT+AGG | - | 50837:3557-3576 | MS.gene80124:intergenic | 45.0% | |
| CACCTAACTCTCTCCATATG+TGG | + | 50837:3552-3571 | MS.gene80124:intron | 45.0% | |
| CCATTGACGTAAGACAAGCA+AGG | - | 50837:2013-2032 | MS.gene80124:intergenic | 45.0% | |
| CCTCGTGAAGAAGTCAAAGT+AGG | + | 50837:4110-4129 | MS.gene80124:CDS | 45.0% | |
| CCTTGCTTGTCTTACGTCAA+TGG | + | 50837:2010-2029 | MS.gene80124:CDS | 45.0% | |
| CTCTCTCCATATGTGGTGTA+TGG | + | 50837:3559-3578 | MS.gene80124:intron | 45.0% | |
| GGGAGGTTTGACAAAAATGG+TGG | + | 50837:4223-4242 | MS.gene80124:CDS | 45.0% | |
| GGGCCGAAAAGAAGACAAAA+GGG | + | 50837:3736-3755 | MS.gene80124:CDS | 45.0% | |
| GGTGATGTTCATGGAAACGT+TGG | - | 50837:1777-1796 | MS.gene80124:intergenic | 45.0% | |
| GTAGTTAGTAGCACATGCGA+GGG | + | 50837:3266-3285 | MS.gene80124:intron | 45.0% | |
| GTCTTACGTCAATGGTGTGT+GGG | + | 50837:2018-2037 | MS.gene80124:CDS | 45.0% | |
| GTCTTGCCAATTAGCTGGAT+AGG | + | 50837:3509-3528 | MS.gene80124:intron | 45.0% | |
| TCGCACGCAAAATGAAAGCA+TGG | - | 50837:3073-3092 | MS.gene80124:intergenic | 45.0% | |
| TGGGCCGAAAAGAAGACAAA+AGG | + | 50837:3735-3754 | MS.gene80124:CDS | 45.0% | |
| TGTAGTTAGTAGCACATGCG+AGG | + | 50837:3265-3284 | MS.gene80124:intron | 45.0% | |
| TGTCTTACGTCAATGGTGTG+TGG | + | 50837:2017-2036 | MS.gene80124:CDS | 45.0% | |
| TGTTTCTTCTGTGCTCTTCG+GGG | + | 50837:1973-1992 | MS.gene80124:CDS | 45.0% | |
| TTTCTCCAGTCTGAATCCAC+CGG | + | 50837:1923-1942 | MS.gene80124:CDS | 45.0% | |
| ! | CCTACTTTGACTTCTTCACG+AGG | - | 50837:4113-4132 | MS.gene80124:intergenic | 45.0% |
| ! | CGAAGAGCACAGAAGAAACA+AGG | - | 50837:1973-1992 | MS.gene80124:intergenic | 45.0% |
| ! | TAAGGATTTGAGATCACCGG+TGG | - | 50837:1942-1961 | MS.gene80124:intergenic | 45.0% |
| !! | GACAACCCATCTTTTTCGTC+AGG | - | 50837:4038-4057 | MS.gene80124:intergenic | 45.0% |
| !!! | TTGTTTTTGAGTGGGACCCT+CGG | - | 50837:1894-1913 | MS.gene80124:intergenic | 45.0% |
| !! | ATTATTATAGAAATATAATA+TGG | + | 50837:2330-2349 | MS.gene80124:intron | 5.0% |
| CGGCTACAAAGTCGATTGGA+GGG | - | 50837:4388-4407 | MS.gene80124:intergenic | 50.0% | |
| GGTAGCGATCATACTGAGCA+CGG | - | 50837:1867-1886 | MS.gene80124:intergenic | 50.0% | |
| GGTCAGTTCACAGCTTAACG+AGG | + | 50837:3784-3803 | MS.gene80124:CDS | 50.0% | |
| GTGCTCAGTATGATCGCTAC+CGG | + | 50837:1866-1885 | MS.gene80124:CDS | 50.0% | |
| TCGGCTACAAAGTCGATTGG+AGG | - | 50837:4389-4408 | MS.gene80124:intergenic | 50.0% | |
| TGCTCAGTATGATCGCTACC+GGG | + | 50837:1867-1886 | MS.gene80124:CDS | 50.0% | |
| TGGTCGGCTACAAAGTCGAT+TGG | - | 50837:4392-4411 | MS.gene80124:intergenic | 50.0% | |
| ! | AGAAGGTACGAAAGCTGCAG+CGG | + | 50837:4313-4332 | MS.gene80124:CDS | 50.0% |
| ! | AGCACGGTGTTGAGCGATAA+TGG | - | 50837:1851-1870 | MS.gene80124:intergenic | 50.0% |
| ! | CACAACTTCTGGTGTTAGCG+TGG | + | 50837:2229-2248 | MS.gene80124:intron | 50.0% |
| ! | GGTGGATTCAGACTGGAGAA+AGG | - | 50837:1924-1943 | MS.gene80124:intergenic | 50.0% |
| AAGCTGTGAACTGACCCGCA+TGG | - | 50837:3780-3799 | MS.gene80124:intergenic | 55.0% | |
| AAGTCGATTGGAGGGAGCAG+AGG | - | 50837:4380-4399 | MS.gene80124:intergenic | 55.0% | |
| ACGCGTGCATGCCAAGCTAA+CGG | - | 50837:4342-4361 | MS.gene80124:intergenic | 55.0% | |
| AGTCGATTGGAGGGAGCAGA+GGG | - | 50837:4379-4398 | MS.gene80124:intergenic | 55.0% | |
| GTAAGACAAGCAAGGGCCAC+TGG | - | 50837:2005-2024 | MS.gene80124:intergenic | 55.0% | |
| ! | GATCACCGGTGGATTCAGAC+TGG | - | 50837:1931-1950 | MS.gene80124:intergenic | 55.0% |
| ATGATCGCTACCGGGTCCGA+GGG | + | 50837:1875-1894 | MS.gene80124:CDS | 60.0% | |
| GCATGCACGCGTTCTCGGTA+CGG | + | 50837:4350-4369 | MS.gene80124:CDS | 60.0% | |
| GCTTGGCATGCACGCGTTCT+CGG | + | 50837:4345-4364 | MS.gene80124:CDS | 60.0% | |
| GTCGATTGGAGGGAGCAGAG+GGG | - | 50837:4378-4397 | MS.gene80124:intergenic | 60.0% | |
| TATGATCGCTACCGGGTCCG+AGG | + | 50837:1874-1893 | MS.gene80124:CDS | 60.0% | |
| TGCAGCGGTGACCGTTAGCT+TGG | + | 50837:4328-4347 | MS.gene80124:CDS | 60.0% | |
| TTGAGTGGGACCCTCGGACC+CGG | - | 50837:1888-1907 | MS.gene80124:intergenic | 65.0% | |
| CTCTTCGGGGCTCGCACCAG+TGG | + | 50837:1986-2005 | MS.gene80124:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 50837 | gene | 1731 | 4493 | 1731 | ID=MS.gene80124 |
| 50837 | mRNA | 1731 | 4493 | 1731 | ID=MS.gene80124.t1;Parent=MS.gene80124 |
| 50837 | exon | 1731 | 2132 | 1731 | ID=MS.gene80124.t1.exon1;Parent=MS.gene80124.t1 |
| 50837 | CDS | 1731 | 2132 | 1731 | ID=cds.MS.gene80124.t1;Parent=MS.gene80124.t1 |
| 50837 | exon | 3705 | 4493 | 3705 | ID=MS.gene80124.t1.exon2;Parent=MS.gene80124.t1 |
| 50837 | CDS | 3705 | 4493 | 3705 | ID=cds.MS.gene80124.t1;Parent=MS.gene80124.t1 |
| Gene Sequence |
| Protein sequence |
