Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80147.t1 | KEH17733.1 | 93.3 | 1054 | 31 | 3 | 1 | 1017 | 1 | 1051 | 0.00E+00 | 1805.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80147.t1 | Q8GVE8 | 71.2 | 1054 | 245 | 5 | 1 | 1017 | 1 | 1032 | 0.0e+00 | 1444.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80147.t1 | A0A072TLJ0 | 93.3 | 1054 | 31 | 3 | 1 | 1017 | 1 | 1051 | 0.0e+00 | 1805.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene80147 | MS.gene032250 | PPI |
MS.gene80147 | MS.gene54826 | PPI |
MS.gene80147 | MS.gene73810 | PPI |
MS.gene80147 | MS.gene026844 | PPI |
MS.gene80147 | MS.gene060602 | PPI |
MS.gene80147 | MS.gene060183 | PPI |
MS.gene80147 | MS.gene36018 | PPI |
MS.gene80147 | MS.gene043538 | PPI |
MS.gene031613 | MS.gene80147 | PPI |
MS.gene80147 | MS.gene31351 | PPI |
MS.gene80147 | MS.gene006687 | PPI |
MS.gene80147 | MS.gene028781 | PPI |
MS.gene63756 | MS.gene80147 | PPI |
MS.gene80147 | MS.gene34261 | PPI |
MS.gene045495 | MS.gene80147 | PPI |
MS.gene80147 | MS.gene007929 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80147.t1 | MTR_0002s0890 | 94.402 | 1054 | 19 | 4 | 1 | 1017 | 1 | 1051 | 0.0 | 2029 |
MS.gene80147.t1 | MTR_1g094010 | 70.178 | 674 | 128 | 10 | 1 | 632 | 1 | 643 | 0.0 | 874 |
MS.gene80147.t1 | MTR_1g094000 | 86.257 | 342 | 47 | 0 | 676 | 1017 | 1 | 342 | 0.0 | 601 |
MS.gene80147.t1 | MTR_8g463920 | 47.049 | 627 | 279 | 7 | 425 | 1017 | 360 | 967 | 1.75e-179 | 548 |
MS.gene80147.t1 | MTR_8g463920 | 45.989 | 187 | 100 | 1 | 100 | 285 | 155 | 341 | 4.44e-43 | 170 |
MS.gene80147.t1 | MTR_4g079860 | 46.411 | 627 | 283 | 7 | 425 | 1017 | 359 | 966 | 9.45e-179 | 546 |
MS.gene80147.t1 | MTR_4g079860 | 36.042 | 283 | 145 | 6 | 54 | 300 | 77 | 359 | 9.30e-44 | 172 |
MS.gene80147.t1 | MTR_2g076670 | 46.486 | 626 | 282 | 7 | 426 | 1017 | 360 | 966 | 2.78e-176 | 540 |
MS.gene80147.t1 | MTR_2g076670 | 45.263 | 190 | 103 | 1 | 97 | 285 | 151 | 340 | 1.56e-43 | 172 |
MS.gene80147.t1 | MTR_2g092930 | 45.933 | 627 | 286 | 7 | 425 | 1017 | 359 | 966 | 1.59e-174 | 535 |
MS.gene80147.t1 | MTR_2g092930 | 37.457 | 291 | 146 | 6 | 54 | 308 | 77 | 367 | 1.29e-45 | 178 |
MS.gene80147.t1 | MTR_8g463920 | 51.233 | 527 | 235 | 6 | 425 | 948 | 360 | 867 | 1.39e-168 | 516 |
MS.gene80147.t1 | MTR_8g463920 | 45.989 | 187 | 100 | 1 | 100 | 285 | 155 | 341 | 3.28e-43 | 170 |
MS.gene80147.t1 | MTR_1g009850 | 34.623 | 491 | 198 | 10 | 529 | 1017 | 1 | 370 | 1.76e-68 | 234 |
MS.gene80147.t1 | MTR_7g060030 | 51.471 | 204 | 25 | 3 | 40 | 243 | 1 | 130 | 3.57e-51 | 179 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene80147.t1 | AT1G68750 | 72.391 | 1054 | 232 | 6 | 1 | 1017 | 1 | 1032 | 0.0 | 1511 |
MS.gene80147.t1 | AT2G42600 | 46.720 | 625 | 283 | 6 | 425 | 1017 | 357 | 963 | 3.23e-178 | 545 |
MS.gene80147.t1 | AT2G42600 | 38.843 | 242 | 134 | 3 | 51 | 278 | 93 | 334 | 3.99e-43 | 171 |
MS.gene80147.t1 | AT2G42600 | 46.720 | 625 | 283 | 6 | 425 | 1017 | 357 | 963 | 3.23e-178 | 545 |
MS.gene80147.t1 | AT2G42600 | 38.843 | 242 | 134 | 3 | 51 | 278 | 93 | 334 | 3.99e-43 | 171 |
MS.gene80147.t1 | AT2G42600 | 46.720 | 625 | 283 | 6 | 425 | 1017 | 357 | 963 | 3.23e-178 | 545 |
MS.gene80147.t1 | AT2G42600 | 38.843 | 242 | 134 | 3 | 51 | 278 | 93 | 334 | 3.99e-43 | 171 |
MS.gene80147.t1 | AT1G53310 | 45.920 | 625 | 287 | 6 | 426 | 1017 | 361 | 967 | 4.33e-175 | 536 |
MS.gene80147.t1 | AT1G53310 | 41.518 | 224 | 124 | 3 | 76 | 297 | 131 | 349 | 4.14e-44 | 174 |
MS.gene80147.t1 | AT1G53310 | 45.920 | 625 | 287 | 6 | 426 | 1017 | 361 | 967 | 4.33e-175 | 536 |
MS.gene80147.t1 | AT1G53310 | 41.518 | 224 | 124 | 3 | 76 | 297 | 131 | 349 | 4.14e-44 | 174 |
MS.gene80147.t1 | AT1G53310 | 45.920 | 625 | 287 | 6 | 426 | 1017 | 361 | 967 | 4.33e-175 | 536 |
MS.gene80147.t1 | AT1G53310 | 41.518 | 224 | 124 | 3 | 76 | 297 | 131 | 349 | 4.14e-44 | 174 |
MS.gene80147.t1 | AT3G14940 | 46.571 | 627 | 281 | 8 | 426 | 1017 | 361 | 968 | 1.39e-174 | 535 |
MS.gene80147.t1 | AT3G14940 | 42.857 | 224 | 121 | 3 | 76 | 297 | 131 | 349 | 3.76e-46 | 180 |
MS.gene80147.t1 | AT3G14940 | 46.571 | 627 | 281 | 8 | 426 | 1017 | 361 | 968 | 1.39e-174 | 535 |
MS.gene80147.t1 | AT3G14940 | 42.857 | 224 | 121 | 3 | 76 | 297 | 131 | 349 | 3.76e-46 | 180 |
Find 258 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAAACTGGATCTTCCTATT+TGG | 0.142042 | 5.1:+42116855 | None:intergenic |
TGATGCAATTACCAAGTATT+TGG | 0.149299 | 5.1:-42116170 | MS.gene80147:CDS |
CATCCAAGAGCCAAACTTTA+TGG | 0.170496 | 5.1:+42119095 | None:intergenic |
CCTCTTCCCTTTAAGCTCTT+TGG | 0.192525 | 5.1:+42116096 | None:intergenic |
TTGAAGTAGGTGAGGAATTC+TGG | 0.196281 | 5.1:+42113553 | None:intergenic |
ATGGTTGGGTATTCTGATTC+TGG | 0.227883 | 5.1:-42114577 | MS.gene80147:CDS |
AATTACCAAGTATTTGGATA+TGG | 0.228014 | 5.1:-42116164 | MS.gene80147:CDS |
CTTACAGTTTGTGGGGAATT+AGG | 0.242082 | 5.1:-42115301 | MS.gene80147:CDS |
CCCGGCAGCAATACCATTAA+TGG | 0.242857 | 5.1:+42112982 | None:intergenic |
CCAGGAAGATGAGGGAGTTT+TGG | 0.253716 | 5.1:+42116818 | None:intergenic |
TTCTTAACCAAAGAGCTTAA+AGG | 0.257498 | 5.1:-42116103 | MS.gene80147:CDS |
AGACCTGATTGAGATGGTTT+TGG | 0.259081 | 5.1:-42113287 | MS.gene80147:CDS |
TTAATGCATGCAGCATCTTT+TGG | 0.273713 | 5.1:-42119626 | MS.gene80147:intron |
GCTACCTTTGCTGTCACATT+TGG | 0.290322 | 5.1:+42119051 | None:intergenic |
CTCCAAAAGCTTCTGAAAAC+TGG | 0.293397 | 5.1:+42116841 | None:intergenic |
ATCACCATTTCTCGATCTTC+AGG | 0.297580 | 5.1:+42119577 | None:intergenic |
AAAACTGGATCTTCCTATTT+GGG | 0.300543 | 5.1:+42116856 | None:intergenic |
GTCCTCCTTATCACCATTAA+TGG | 0.305564 | 5.1:-42112995 | MS.gene80147:CDS |
TGAAACAACCGACCAGCTTT+TGG | 0.306504 | 5.1:-42116504 | MS.gene80147:CDS |
CCAAAACTCCCTCATCTTCC+TGG | 0.311533 | 5.1:-42116818 | MS.gene80147:CDS |
CTACCTTTGCTGTCACATTT+GGG | 0.315237 | 5.1:+42119052 | None:intergenic |
AGTAAAGAAGCCGTCTGATT+TGG | 0.315756 | 5.1:+42117331 | None:intergenic |
GAGATGGTGCAGGCCAAGTT+TGG | 0.316061 | 5.1:-42113739 | MS.gene80147:CDS |
ATCCGTAGAGTTTCTACCTT+TGG | 0.323193 | 5.1:-42116321 | MS.gene80147:CDS |
TTGCAAAGAGTACGGTATTA+AGG | 0.329108 | 5.1:-42114488 | MS.gene80147:CDS |
TCTCCTCTGTTATGAATCTA+TGG | 0.333593 | 5.1:-42116474 | MS.gene80147:intron |
TTGAGCTCGCTGAACTTGTT+GGG | 0.334363 | 5.1:+42116945 | None:intergenic |
TTTCGAGTTTCTGCAGAGAT+AGG | 0.334368 | 5.1:-42115790 | MS.gene80147:CDS |
ACTTGCACTCCCATAAAGTT+TGG | 0.348788 | 5.1:-42119105 | MS.gene80147:CDS |
TAACCTCTTGGTGTCCGTTA+TGG | 0.349444 | 5.1:+42114682 | None:intergenic |
TTTGTCAGAGCACCCCTTCA+TGG | 0.350130 | 5.1:+42118376 | None:intergenic |
TGGCAACCGACCTCTATATT+CGG | 0.359485 | 5.1:-42118427 | MS.gene80147:CDS |
TCCTCTCTTTGAAACTGTTA+AGG | 0.360533 | 5.1:-42114778 | MS.gene80147:CDS |
TTCGTTCTTCCTGCTTGGCT+TGG | 0.362195 | 5.1:-42113403 | MS.gene80147:CDS |
TCTTAACCAAAGAGCTTAAA+GGG | 0.365000 | 5.1:-42116102 | MS.gene80147:CDS |
TTGTTTGCAGAATCCCAAAT+AGG | 0.365790 | 5.1:-42116869 | MS.gene80147:CDS |
GTTTGCAAACTGTATTATAA+AGG | 0.369503 | 5.1:+42119918 | None:intergenic |
AGACTGTACTGCGGTAAAAC+TGG | 0.371633 | 5.1:+42113584 | None:intergenic |
CTTCCTGCTTGGCTTGGAGT+TGG | 0.379581 | 5.1:-42113397 | MS.gene80147:CDS |
CTGGGCGCTTTACTGCTGCC+TGG | 0.379709 | 5.1:-42114546 | MS.gene80147:CDS |
AGCTTCTTCTAAGTTCATCT+TGG | 0.381249 | 5.1:+42120090 | None:intergenic |
GCTTGGCTTGGAGTTGGAGC+AGG | 0.381867 | 5.1:-42113391 | MS.gene80147:CDS |
GCTCTAGCTGGAAGTTTAGA+TGG | 0.385638 | 5.1:+42117307 | None:intergenic |
CGAGGAGATGGCAGAGTTGT+TGG | 0.386160 | 5.1:-42120137 | MS.gene80147:CDS |
GAGGAGCTGGTTCCGTGATC+AGG | 0.392098 | 5.1:-42114749 | MS.gene80147:CDS |
ACTTCAACTGTGAGCAATGC+TGG | 0.395934 | 5.1:-42116989 | MS.gene80147:CDS |
CTCTAGCAATCTTGTGGAGC+TGG | 0.398924 | 5.1:-42116381 | MS.gene80147:intron |
TTGAAAGGTGCTTGCGAGAA+AGG | 0.407969 | 5.1:-42113367 | MS.gene80147:CDS |
CTCCCATAAAGTTTGGCTCT+TGG | 0.409831 | 5.1:-42119098 | MS.gene80147:CDS |
TTCCCGAGGACAATTCTATA+AGG | 0.410709 | 5.1:+42116788 | None:intergenic |
CCAGATTCGTTCTTCCTGCT+TGG | 0.411430 | 5.1:-42113408 | MS.gene80147:CDS |
TGGCGGAGGCCCAACTTATC+TGG | 0.413350 | 5.1:-42114428 | MS.gene80147:CDS |
CCAAGCAGGAAGAACGAATC+TGG | 0.414731 | 5.1:+42113408 | None:intergenic |
ATTACCAAGTATTTGGATAT+GGG | 0.416538 | 5.1:-42116163 | MS.gene80147:CDS |
TTGGCACATGAAATTCTAGA+AGG | 0.416667 | 5.1:-42118344 | MS.gene80147:intron |
TTCCCAAAACCATCTCAATC+AGG | 0.417745 | 5.1:+42113284 | None:intergenic |
ATTGAGCTCGCTGAACTTGT+TGG | 0.419020 | 5.1:+42116944 | None:intergenic |
ATCCAAGAGCCAAACTTTAT+GGG | 0.419228 | 5.1:+42119096 | None:intergenic |
GGGAGTATTGGTCGTGGCGG+AGG | 0.421197 | 5.1:-42114442 | MS.gene80147:CDS |
TGTTGGGGATGCATGACTAT+TGG | 0.424180 | 5.1:+42116961 | None:intergenic |
AGATGGTGCAGGCCAAGTTT+GGG | 0.425318 | 5.1:-42113738 | MS.gene80147:CDS |
TCTAGGACTTCTTTAACATC+TGG | 0.428875 | 5.1:+42115817 | None:intergenic |
TGTTGATTAGAGTTGGAAGA+AGG | 0.430928 | 5.1:+42116911 | None:intergenic |
AACCCTTCGGTCTACTGAGC+AGG | 0.432317 | 5.1:-42113764 | MS.gene80147:CDS |
TATAATGACCGACCTGATCT+TGG | 0.436771 | 5.1:-42119601 | MS.gene80147:CDS |
CAGAAACTCGAAACGTATCT+AGG | 0.437217 | 5.1:+42115800 | None:intergenic |
TGGAGCCTATGTGATCTCTA+TGG | 0.438799 | 5.1:-42115755 | MS.gene80147:CDS |
CATAAAGTTTGGCTCTTGGA+TGG | 0.439041 | 5.1:-42119094 | MS.gene80147:CDS |
GCTATTCAGTCCCAGCCGCC+TGG | 0.440641 | 5.1:-42114406 | MS.gene80147:CDS |
CTCTGACAAATTGTCTAGAT+TGG | 0.442124 | 5.1:-42118363 | MS.gene80147:CDS |
AAGAAGTTGTTGATTAGAGT+TGG | 0.442500 | 5.1:+42116904 | None:intergenic |
ACCATTAATGGTATTGCTGC+CGG | 0.442827 | 5.1:-42112983 | MS.gene80147:CDS |
ATCAAGTGTTTCAGCATGCC+TGG | 0.443587 | 5.1:+42116189 | None:intergenic |
GACACCTTCGTGCCATTCCC+TGG | 0.444073 | 5.1:-42113450 | MS.gene80147:CDS |
TGAGAGAGATAACTTCAATA+TGG | 0.445525 | 5.1:-42119467 | MS.gene80147:CDS |
ACAAACTTCTGCAGAACAAC+AGG | 0.445868 | 5.1:-42113132 | MS.gene80147:CDS |
CTCCACTTGCAACATGTTCA+AGG | 0.446819 | 5.1:+42113066 | None:intergenic |
CCAGCTCTAGCTTCATCAAC+TGG | 0.447508 | 5.1:+42119411 | None:intergenic |
AGAAAAGCCACAACAGGAAT+CGG | 0.447845 | 5.1:-42113472 | MS.gene80147:CDS |
TTTGACGGACTTCTATTCTC+TGG | 0.450218 | 5.1:+42117358 | None:intergenic |
GACTGAATAGCCAGATAAGT+TGG | 0.452157 | 5.1:+42114418 | None:intergenic |
CCATTACAGAGCCAGGCGGC+TGG | 0.452187 | 5.1:+42114395 | None:intergenic |
GCTCATTTACCTTCTTGTGC+TGG | 0.452746 | 5.1:-42117286 | MS.gene80147:intron |
TCTGATTCTGGTAAAGATGC+TGG | 0.453942 | 5.1:-42114565 | MS.gene80147:CDS |
ATTCTATAAGGAGCAATTCC+AGG | 0.458187 | 5.1:+42116800 | None:intergenic |
TACAGTCATCGTCGAAGCCT+TGG | 0.459975 | 5.1:+42120324 | None:intergenic |
GACGATGACTGTAAGTTGCT+TGG | 0.460688 | 5.1:-42120314 | MS.gene80147:CDS |
TTGAGTCCATGCGAATATCC+AGG | 0.461942 | 5.1:+42113432 | None:intergenic |
GGAGAAGAGGTTCCAAAAGC+TGG | 0.468802 | 5.1:+42116492 | None:intergenic |
AATCCTCACGTTTAGTCTCA+TGG | 0.468993 | 5.1:+42117389 | None:intergenic |
TGGGCGCTTTACTGCTGCCT+GGG | 0.469321 | 5.1:-42114545 | MS.gene80147:CDS |
TGTTTGTGGCAACCCAAACT+TGG | 0.470943 | 5.1:+42113726 | None:intergenic |
GGAAACTTCTATCAATAGAT+TGG | 0.474910 | 5.1:-42114728 | MS.gene80147:CDS |
GGCAACCGACCTCTATATTC+GGG | 0.474992 | 5.1:-42118426 | MS.gene80147:CDS |
TTATAATACAGTTTGCAAAC+AGG | 0.476153 | 5.1:-42119915 | MS.gene80147:intron |
AATGAAGCTTGACTTGCGTC+AGG | 0.477603 | 5.1:-42116289 | MS.gene80147:intron |
ATTAAGGTTACTTTATTCCA+TGG | 0.479859 | 5.1:-42114472 | MS.gene80147:CDS |
ACGAGAAGAAAAGCCACAAC+AGG | 0.479904 | 5.1:-42113478 | MS.gene80147:CDS |
GCCTATATGCAGGTTATGGT+TGG | 0.479983 | 5.1:-42114592 | MS.gene80147:intron |
AAGTTTGTCACCGTTATATG+TGG | 0.480819 | 5.1:-42113160 | MS.gene80147:CDS |
AGTCAGCAATGCTTTAAAGA+AGG | 0.480964 | 5.1:-42119240 | MS.gene80147:intron |
GAAGGTAAATGAGCTCTAGC+TGG | 0.482723 | 5.1:+42117295 | None:intergenic |
ATAGTTGGTGAGAAGTTATC+CGG | 0.483396 | 5.1:+42112949 | None:intergenic |
CCTATATGCAGGTTATGGTT+GGG | 0.483659 | 5.1:-42114591 | MS.gene80147:intron |
CTTTATGTGTTTGTATTGCA+AGG | 0.486315 | 5.1:+42119753 | None:intergenic |
GCCACACCTCAAGCAGAGCT+TGG | 0.486352 | 5.1:-42113526 | MS.gene80147:CDS |
CAATACCATTAATGGTGATA+AGG | 0.487204 | 5.1:+42112990 | None:intergenic |
TCCTATCTCACCTCTATACT+AGG | 0.489136 | 5.1:+42116061 | None:intergenic |
CGATCTTCAGGACCAAGATC+AGG | 0.489148 | 5.1:+42119589 | None:intergenic |
AAGAACTTGGTCGTCAACTA+AGG | 0.489824 | 5.1:-42113204 | MS.gene80147:CDS |
TGGGGCGGCTACCTATGTTC+AGG | 0.490293 | 5.1:+42113500 | None:intergenic |
CAATCTTGTGGAGCTGGAGC+TGG | 0.490881 | 5.1:-42116375 | MS.gene80147:CDS |
GCACCAGGGATGTCGAGTCT+TGG | 0.491641 | 5.1:+42117145 | None:intergenic |
GATGCACGTCTTACAGTTTG+TGG | 0.493990 | 5.1:-42115310 | MS.gene80147:CDS |
AGAAATGGTGATAGAAGATC+TGG | 0.494628 | 5.1:-42119566 | MS.gene80147:intron |
GAGTGCTTGTAATATGAGAC+AGG | 0.494896 | 5.1:-42120167 | MS.gene80147:CDS |
AATTTCCTCTAGCAATCTTG+TGG | 0.496853 | 5.1:-42116387 | MS.gene80147:intron |
CCATTAATGGTATTGCTGCC+GGG | 0.497379 | 5.1:-42112982 | MS.gene80147:CDS |
TTCGAGTTTCTGCAGAGATA+GGG | 0.499286 | 5.1:-42115789 | MS.gene80147:CDS |
AAATCCCATCTTGCAAAAGC+TGG | 0.501455 | 5.1:+42119951 | None:intergenic |
CTCCTTATAGAATTGTCCTC+GGG | 0.504346 | 5.1:-42116790 | MS.gene80147:CDS |
GTTAAGGACCTCAGAGGAGC+TGG | 0.506307 | 5.1:-42114762 | MS.gene80147:CDS |
TTTATGGGAGTGCAAGTCAA+TGG | 0.506481 | 5.1:+42119111 | None:intergenic |
CATGGCCGTGGAGGGAGTAT+TGG | 0.506592 | 5.1:-42114454 | MS.gene80147:CDS |
CCTCGGGAATGTAAAAGATA+AGG | 0.509108 | 5.1:-42116774 | MS.gene80147:intron |
TGGTCCTGAAGATCGAGAAA+TGG | 0.509757 | 5.1:-42119581 | MS.gene80147:CDS |
CATTACAGAGCCAGGCGGCT+GGG | 0.509910 | 5.1:+42114396 | None:intergenic |
ATGGTATTGCTGCCGGGATG+AGG | 0.512914 | 5.1:-42112976 | MS.gene80147:CDS |
TATCATTGCAGGGAACCCTT+CGG | 0.513049 | 5.1:-42113777 | MS.gene80147:intron |
TTGAGCTTTGTAAAGTTCCC+AGG | 0.514250 | 5.1:+42114528 | None:intergenic |
ATGAGACTAAACGTGAGGAT+TGG | 0.515240 | 5.1:-42117387 | MS.gene80147:CDS |
ATAAAGTTTGGCTCTTGGAT+GGG | 0.515444 | 5.1:-42119093 | MS.gene80147:CDS |
GAGATTTGAGTTATCCATGA+AGG | 0.515713 | 5.1:-42118390 | MS.gene80147:CDS |
GGAGTTGGAGCAGGTTTGAA+AGG | 0.516727 | 5.1:-42113382 | MS.gene80147:CDS |
CGACCTCTATATTCGGGAAG+TGG | 0.517085 | 5.1:-42118420 | MS.gene80147:CDS |
GAAAGTCCACTCTTTGTACA+TGG | 0.518151 | 5.1:+42113324 | None:intergenic |
TGCAAGTGGAGATACTTAAG+AGG | 0.518732 | 5.1:-42113054 | MS.gene80147:CDS |
GCTCCAACTCCAAGCCAAGC+AGG | 0.520197 | 5.1:+42113394 | None:intergenic |
TAGCAGTTGATGTACATTTG+AGG | 0.521119 | 5.1:+42115732 | None:intergenic |
CCAGCCGCCTGGCTCTGTAA+TGG | 0.521978 | 5.1:-42114395 | MS.gene80147:intron |
CTAGCTTCATCAACTGGAGT+AGG | 0.522020 | 5.1:+42119417 | None:intergenic |
TATCCACTTCCCGAATATAG+AGG | 0.522113 | 5.1:+42118417 | None:intergenic |
ACTAGTTCCTCCTAGTATAG+AGG | 0.523919 | 5.1:-42116071 | MS.gene80147:intron |
CAATACTCCCTCCACGGCCA+TGG | 0.524087 | 5.1:+42114455 | None:intergenic |
ATATGGGTACATACAGTGAA+TGG | 0.527194 | 5.1:-42116147 | MS.gene80147:CDS |
GAGTTGGAAGAAGGAGAGCG+TGG | 0.527361 | 5.1:+42116920 | None:intergenic |
GCTCCTTATAGAATTGTCCT+CGG | 0.530711 | 5.1:-42116791 | MS.gene80147:CDS |
TAGAGTTTCTACCTTTGGCA+TGG | 0.532015 | 5.1:-42116316 | MS.gene80147:CDS |
GTTACTTTATTCCATGGCCG+TGG | 0.532100 | 5.1:-42114466 | MS.gene80147:CDS |
TTTGTCGTGCCCACATATAA+CGG | 0.532851 | 5.1:+42113150 | None:intergenic |
AGTTGTCTGACAGATGTTTG+TGG | 0.533030 | 5.1:+42113712 | None:intergenic |
AGATTTGAGTTATCCATGAA+GGG | 0.534361 | 5.1:-42118389 | MS.gene80147:CDS |
CCAAAGAGCTTAAAGGGAAG+AGG | 0.535345 | 5.1:-42116096 | MS.gene80147:CDS |
TCCAAGCTCTGCTTGAGGTG+TGG | 0.536208 | 5.1:+42113525 | None:intergenic |
AGAGTTGTTGGAGAAGCAGT+TGG | 0.536252 | 5.1:-42120125 | MS.gene80147:CDS |
CTTTATTCCATGGCCGTGGA+GGG | 0.536693 | 5.1:-42114462 | MS.gene80147:CDS |
TGTACCCATATCCAAATACT+TGG | 0.536867 | 5.1:+42116159 | None:intergenic |
GGAATTAGGAAGAGAATGTC+CGG | 0.540328 | 5.1:-42115287 | MS.gene80147:CDS |
ACTGAATAGCCAGATAAGTT+GGG | 0.541395 | 5.1:+42114419 | None:intergenic |
ATGCACGTCTTACAGTTTGT+GGG | 0.541500 | 5.1:-42115309 | MS.gene80147:CDS |
ACTTTATTCCATGGCCGTGG+AGG | 0.542132 | 5.1:-42114463 | MS.gene80147:CDS |
GTCTACTGAGCAGGGAGAGA+TGG | 0.542351 | 5.1:-42113755 | MS.gene80147:CDS |
ACAGGGAGGAATCGAGGAGA+TGG | 0.542664 | 5.1:-42120149 | MS.gene80147:CDS |
ATCAACAACTTCTTGCTCAA+AGG | 0.542695 | 5.1:-42116895 | MS.gene80147:CDS |
TCCACTTGCAACATGTTCAA+GGG | 0.543143 | 5.1:+42113067 | None:intergenic |
TCCCTTGAACATGTTGCAAG+TGG | 0.546576 | 5.1:-42113068 | MS.gene80147:CDS |
CTGATTCTGGTAAAGATGCT+GGG | 0.546993 | 5.1:-42114564 | MS.gene80147:CDS |
ACAGAGAACTCGTAGACGAT+TGG | 0.547439 | 5.1:-42116576 | MS.gene80147:CDS |
CTCCCTGCTCAGTAGACCGA+AGG | 0.549087 | 5.1:+42113761 | None:intergenic |
TGATAGAAGTTTCCTGATCA+CGG | 0.551284 | 5.1:+42114737 | None:intergenic |
CATCCAAGACTCGACATCCC+TGG | 0.552104 | 5.1:-42117148 | MS.gene80147:CDS |
TAACTCACCATTACAGAGCC+AGG | 0.553845 | 5.1:+42114388 | None:intergenic |
CATAATAGACCTGATTGAGA+TGG | 0.555044 | 5.1:-42113293 | MS.gene80147:CDS |
GATTCATAACAGAGGAGAAG+AGG | 0.556501 | 5.1:+42116479 | None:intergenic |
ATGTTCAAGGGATTGAGAAA+CGG | 0.557412 | 5.1:+42113079 | None:intergenic |
GCCTTGGAAGGACATTTCCT+CGG | 0.558046 | 5.1:+42120340 | None:intergenic |
CCAGTTGATGAAGCTAGAGC+TGG | 0.558556 | 5.1:-42119411 | MS.gene80147:intron |
TGAGCTCGCTGAACTTGTTG+GGG | 0.558745 | 5.1:+42116946 | None:intergenic |
AAGGTGTCCGATTCCTGTTG+TGG | 0.560047 | 5.1:+42113465 | None:intergenic |
ACTTGATTGTAATCAGCACC+AGG | 0.561220 | 5.1:+42117130 | None:intergenic |
GTTGTTTCATAGTAATCAGA+AGG | 0.564434 | 5.1:+42116518 | None:intergenic |
CCATTCCCTGGATATTCGCA+TGG | 0.564946 | 5.1:-42113438 | MS.gene80147:CDS |
GGAGCAATTCCAGGAAGATG+AGG | 0.566139 | 5.1:+42116809 | None:intergenic |
TTACAATCAAGTCAATATCA+AGG | 0.566345 | 5.1:-42117119 | MS.gene80147:intron |
GGAGTGCAAGTCAATGGAAG+TGG | 0.566520 | 5.1:+42119117 | None:intergenic |
GCCGAGGAAATGTCCTTCCA+AGG | 0.571295 | 5.1:-42120341 | MS.gene80147:CDS |
CTGACTCGACGTAAATAATG+AGG | 0.573363 | 5.1:+42119257 | None:intergenic |
CAGTGTGACAGGAATCTGCC+AGG | 0.574647 | 5.1:-42116207 | MS.gene80147:intron |
GAGCAATTCCAGGAAGATGA+GGG | 0.576413 | 5.1:+42116810 | None:intergenic |
TCTCCCAGGATTGAATATTG+TGG | 0.578471 | 5.1:-42119303 | MS.gene80147:intron |
GTACGTCGATTAATTTGTGT+GGG | 0.579325 | 5.1:+42119775 | None:intergenic |
TCCTTAACAGTTTCAAAGAG+AGG | 0.584204 | 5.1:+42114777 | None:intergenic |
AAGTTTGGCTCTTGGATGGG+AGG | 0.585622 | 5.1:-42119090 | MS.gene80147:CDS |
TGCCAAAGGTAGAAACTCTA+CGG | 0.585890 | 5.1:+42116319 | None:intergenic |
TGCAGTAGAGCTCTTACAGA+AGG | 0.591503 | 5.1:-42115332 | MS.gene80147:CDS |
TATGAGACAGGGAGGAATCG+AGG | 0.593271 | 5.1:-42120155 | MS.gene80147:CDS |
TCAGAGAAGAGACAAGAACT+TGG | 0.593854 | 5.1:-42113217 | MS.gene80147:CDS |
TTAGGAAGAGAATGTCCGGC+TGG | 0.594796 | 5.1:-42115283 | MS.gene80147:CDS |
GGTACGTCGATTAATTTGTG+TGG | 0.595875 | 5.1:+42119774 | None:intergenic |
GTGGCTGCTTGCAAAGAGTA+CGG | 0.595935 | 5.1:-42114496 | MS.gene80147:CDS |
CCATGCGAATATCCAGGGAA+TGG | 0.598516 | 5.1:+42113438 | None:intergenic |
ATATTGTGGAGCAGTCACTC+TGG | 0.600388 | 5.1:-42119289 | MS.gene80147:CDS |
GGAACTTTACAAAGCTCAAG+AGG | 0.602528 | 5.1:-42114524 | MS.gene80147:CDS |
ACGATTGGAACTGCTTCTAG+AGG | 0.605318 | 5.1:-42116561 | MS.gene80147:CDS |
CAAAGCTCAAGAGGATGTAG+TGG | 0.607111 | 5.1:-42114515 | MS.gene80147:CDS |
TGAGCAGGGAGAGATGGTGC+AGG | 0.610093 | 5.1:-42113749 | MS.gene80147:CDS |
TACCATTAATGGTGATAAGG+AGG | 0.611172 | 5.1:+42112993 | None:intergenic |
GGAGCTGGTGTGTTAGCTGA+TGG | 0.612816 | 5.1:-42116360 | MS.gene80147:CDS |
AGGTGTGGCCTCATTGAAGT+AGG | 0.612841 | 5.1:+42113540 | None:intergenic |
ACCCTTCGGTCTACTGAGCA+GGG | 0.612866 | 5.1:-42113763 | MS.gene80147:CDS |
AGATGGACTTACGTTCCAGC+CGG | 0.614237 | 5.1:+42115268 | None:intergenic |
TCATGTGTACCAGCACAAGA+AGG | 0.618233 | 5.1:+42117277 | None:intergenic |
TAAAAGCCATGTACAAAGAG+TGG | 0.619720 | 5.1:-42113330 | MS.gene80147:CDS |
TGCACGTCTTACAGTTTGTG+GGG | 0.622759 | 5.1:-42115308 | MS.gene80147:CDS |
TGAGTCCATGCGAATATCCA+GGG | 0.623669 | 5.1:+42113433 | None:intergenic |
TTATCCGGTGTTCCTCATCC+CGG | 0.624760 | 5.1:+42112964 | None:intergenic |
CACTTCCCGAATATAGAGGT+CGG | 0.625274 | 5.1:+42118421 | None:intergenic |
GAGATAGGGAGTGATTCACT+TGG | 0.625975 | 5.1:-42115775 | MS.gene80147:CDS |
AGTTTGTCACCGTTATATGT+GGG | 0.626288 | 5.1:-42113159 | MS.gene80147:CDS |
GAGCTTGGATTCCTGAACAT+AGG | 0.626377 | 5.1:-42113511 | MS.gene80147:CDS |
CTTCATTAACACCATGCCAA+AGG | 0.626725 | 5.1:+42116305 | None:intergenic |
GTCATCGTCGAAGCCTTGGA+AGG | 0.626844 | 5.1:+42120328 | None:intergenic |
TCCCTGCTCAGTAGACCGAA+GGG | 0.626928 | 5.1:+42113762 | None:intergenic |
CACGACCAATACTCCCTCCA+CGG | 0.631814 | 5.1:+42114449 | None:intergenic |
TGCAGAACAACAGGACATTG+AGG | 0.632534 | 5.1:-42113123 | MS.gene80147:CDS |
AAACCATAACGGACACCAAG+AGG | 0.633603 | 5.1:-42114685 | MS.gene80147:intron |
CGTGGAGGGAGTATTGGTCG+TGG | 0.634574 | 5.1:-42114448 | MS.gene80147:CDS |
TGGCCTCATTGAAGTAGGTG+AGG | 0.636182 | 5.1:+42113545 | None:intergenic |
TCAGAAGGATCAAGTTCACA+TGG | 0.638514 | 5.1:+42116533 | None:intergenic |
TATCTCTCCATGCAGCACAC+GGG | 0.645122 | 5.1:-42119144 | MS.gene80147:intron |
TTCCTCGGCAATGTCATCAG+TGG | 0.645816 | 5.1:+42120355 | None:intergenic |
TGGATGGGAGGTGATAGAGA+TGG | 0.646610 | 5.1:-42119078 | MS.gene80147:CDS |
AGGAATCCAAGCTCTGCTTG+AGG | 0.651486 | 5.1:+42113520 | None:intergenic |
GATAACTTCAATATGGCAGA+CGG | 0.653684 | 5.1:-42119460 | MS.gene80147:CDS |
TCTGTAAGAGCTCTACTGCA+AGG | 0.655051 | 5.1:+42115335 | None:intergenic |
GATTTGAGTTATCCATGAAG+GGG | 0.657395 | 5.1:-42118388 | MS.gene80147:CDS |
TCACGGAACCAGCTCCTCTG+AGG | 0.659085 | 5.1:+42114754 | None:intergenic |
AAACCCAAATGTGACAGCAA+AGG | 0.665409 | 5.1:-42119055 | MS.gene80147:intron |
CACCACTGATGACATTGCCG+AGG | 0.666464 | 5.1:-42120357 | MS.gene80147:CDS |
TATCTCACCTCTATACTAGG+AGG | 0.670109 | 5.1:+42116064 | None:intergenic |
TCTATACTAGGAGGAACTAG+TGG | 0.671109 | 5.1:+42116073 | None:intergenic |
AAGAGGTTCCAAAAGCTGGT+CGG | 0.673422 | 5.1:+42116496 | None:intergenic |
GTACCATAGATTCATAACAG+AGG | 0.673498 | 5.1:+42116471 | None:intergenic |
GCTGCCGGGATGAGGAACAC+CGG | 0.675028 | 5.1:-42112968 | MS.gene80147:CDS |
TGTCCAACATAGGCTTCGAG+TGG | 0.683701 | 5.1:-42114802 | MS.gene80147:intron |
ATTCCTCACCTACTTCAATG+AGG | 0.689393 | 5.1:-42113548 | MS.gene80147:CDS |
TGAGGCCATAGAGATCACAT+AGG | 0.689767 | 5.1:+42115750 | None:intergenic |
TAACCATGAGACTAAACGTG+AGG | 0.693529 | 5.1:-42117392 | MS.gene80147:CDS |
GAAACTGTTAAGGACCTCAG+AGG | 0.696978 | 5.1:-42114768 | MS.gene80147:CDS |
GCTTGTAATATGAGACAGGG+AGG | 0.701576 | 5.1:-42120163 | MS.gene80147:CDS |
CTTGATTGTAATCAGCACCA+GGG | 0.701799 | 5.1:+42117131 | None:intergenic |
TATTGCAAAGCAGTATGACG+AGG | 0.705157 | 5.1:-42113248 | MS.gene80147:CDS |
AGTGCTTGTAATATGAGACA+GGG | 0.705612 | 5.1:-42120166 | MS.gene80147:CDS |
GGAGGGAGTATTGGTCGTGG+CGG | 0.711922 | 5.1:-42114445 | MS.gene80147:CDS |
CTTCAGGACCAAGATCAGGT+CGG | 0.713884 | 5.1:+42119593 | None:intergenic |
AGAACAACAGGACATTGAGG+AGG | 0.722574 | 5.1:-42113120 | MS.gene80147:CDS |
ATATCCAGGGAATGGCACGA+AGG | 0.730973 | 5.1:+42113446 | None:intergenic |
CTCACCATTACAGAGCCAGG+CGG | 0.784020 | 5.1:+42114391 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 42112964 | 42120387 | 42112964 | ID=MS.gene80147 |
chr5.1 | mRNA | 42112964 | 42120387 | 42112964 | ID=MS.gene80147.t1;Parent=MS.gene80147 |
chr5.1 | exon | 42120283 | 42120387 | 42120283 | ID=MS.gene80147.t1.exon1;Parent=MS.gene80147.t1 |
chr5.1 | CDS | 42120283 | 42120387 | 42120283 | ID=cds.MS.gene80147.t1;Parent=MS.gene80147.t1 |
chr5.1 | exon | 42120068 | 42120188 | 42120068 | ID=MS.gene80147.t1.exon2;Parent=MS.gene80147.t1 |
chr5.1 | CDS | 42120068 | 42120188 | 42120068 | ID=cds.MS.gene80147.t1;Parent=MS.gene80147.t1 |
chr5.1 | exon | 42119916 | 42120013 | 42119916 | ID=MS.gene80147.t1.exon3;Parent=MS.gene80147.t1 |
chr5.1 | CDS | 42119916 | 42120013 | 42119916 | ID=cds.MS.gene80147.t1;Parent=MS.gene80147.t1 |
chr5.1 | exon | 42119747 | 42119824 | 42119747 | ID=MS.gene80147.t1.exon4;Parent=MS.gene80147.t1 |
chr5.1 | CDS | 42119747 | 42119824 | 42119747 | ID=cds.MS.gene80147.t1;Parent=MS.gene80147.t1 |
chr5.1 | exon | 42119567 | 42119635 | 42119567 | ID=MS.gene80147.t1.exon5;Parent=MS.gene80147.t1 |
chr5.1 | CDS | 42119567 | 42119635 | 42119567 | ID=cds.MS.gene80147.t1;Parent=MS.gene80147.t1 |
chr5.1 | exon | 42119412 | 42119490 | 42119412 | ID=MS.gene80147.t1.exon6;Parent=MS.gene80147.t1 |
chr5.1 | CDS | 42119412 | 42119490 | 42119412 | ID=cds.MS.gene80147.t1;Parent=MS.gene80147.t1 |
chr5.1 | exon | 42119241 | 42119317 | 42119241 | ID=MS.gene80147.t1.exon7;Parent=MS.gene80147.t1 |
chr5.1 | CDS | 42119241 | 42119317 | 42119241 | ID=cds.MS.gene80147.t1;Parent=MS.gene80147.t1 |
chr5.1 | exon | 42119056 | 42119151 | 42119056 | ID=MS.gene80147.t1.exon8;Parent=MS.gene80147.t1 |
chr5.1 | CDS | 42119056 | 42119151 | 42119056 | ID=cds.MS.gene80147.t1;Parent=MS.gene80147.t1 |
chr5.1 | exon | 42118345 | 42118483 | 42118345 | ID=MS.gene80147.t1.exon9;Parent=MS.gene80147.t1 |
chr5.1 | CDS | 42118345 | 42118483 | 42118345 | ID=cds.MS.gene80147.t1;Parent=MS.gene80147.t1 |
chr5.1 | exon | 42117287 | 42117418 | 42117287 | ID=MS.gene80147.t1.exon10;Parent=MS.gene80147.t1 |
chr5.1 | CDS | 42117287 | 42117418 | 42117287 | ID=cds.MS.gene80147.t1;Parent=MS.gene80147.t1 |
chr5.1 | exon | 42117120 | 42117187 | 42117120 | ID=MS.gene80147.t1.exon11;Parent=MS.gene80147.t1 |
chr5.1 | CDS | 42117120 | 42117187 | 42117120 | ID=cds.MS.gene80147.t1;Parent=MS.gene80147.t1 |
chr5.1 | exon | 42116775 | 42117038 | 42116775 | ID=MS.gene80147.t1.exon12;Parent=MS.gene80147.t1 |
chr5.1 | CDS | 42116775 | 42117038 | 42116775 | ID=cds.MS.gene80147.t1;Parent=MS.gene80147.t1 |
chr5.1 | exon | 42116475 | 42116600 | 42116475 | ID=MS.gene80147.t1.exon13;Parent=MS.gene80147.t1 |
chr5.1 | CDS | 42116475 | 42116600 | 42116475 | ID=cds.MS.gene80147.t1;Parent=MS.gene80147.t1 |
chr5.1 | exon | 42116290 | 42116397 | 42116290 | ID=MS.gene80147.t1.exon14;Parent=MS.gene80147.t1 |
chr5.1 | CDS | 42116290 | 42116397 | 42116290 | ID=cds.MS.gene80147.t1;Parent=MS.gene80147.t1 |
chr5.1 | exon | 42116072 | 42116218 | 42116072 | ID=MS.gene80147.t1.exon15;Parent=MS.gene80147.t1 |
chr5.1 | CDS | 42116072 | 42116218 | 42116072 | ID=cds.MS.gene80147.t1;Parent=MS.gene80147.t1 |
chr5.1 | exon | 42115747 | 42115845 | 42115747 | ID=MS.gene80147.t1.exon16;Parent=MS.gene80147.t1 |
chr5.1 | CDS | 42115747 | 42115845 | 42115747 | ID=cds.MS.gene80147.t1;Parent=MS.gene80147.t1 |
chr5.1 | exon | 42115280 | 42115368 | 42115280 | ID=MS.gene80147.t1.exon17;Parent=MS.gene80147.t1 |
chr5.1 | CDS | 42115280 | 42115368 | 42115280 | ID=cds.MS.gene80147.t1;Parent=MS.gene80147.t1 |
chr5.1 | exon | 42114686 | 42114812 | 42114686 | ID=MS.gene80147.t1.exon18;Parent=MS.gene80147.t1 |
chr5.1 | CDS | 42114686 | 42114812 | 42114686 | ID=cds.MS.gene80147.t1;Parent=MS.gene80147.t1 |
chr5.1 | exon | 42114396 | 42114602 | 42114396 | ID=MS.gene80147.t1.exon19;Parent=MS.gene80147.t1 |
chr5.1 | CDS | 42114396 | 42114602 | 42114396 | ID=cds.MS.gene80147.t1;Parent=MS.gene80147.t1 |
chr5.1 | exon | 42112964 | 42113788 | 42112964 | ID=MS.gene80147.t1.exon20;Parent=MS.gene80147.t1 |
chr5.1 | CDS | 42112964 | 42113788 | 42112964 | ID=cds.MS.gene80147.t1;Parent=MS.gene80147.t1 |
Gene Sequence |
Protein sequence |