Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80147.t1 | KEH17733.1 | 93.3 | 1054 | 31 | 3 | 1 | 1017 | 1 | 1051 | 0.00E+00 | 1805.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80147.t1 | Q8GVE8 | 71.2 | 1054 | 245 | 5 | 1 | 1017 | 1 | 1032 | 0.0e+00 | 1444.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80147.t1 | A0A072TLJ0 | 93.3 | 1054 | 31 | 3 | 1 | 1017 | 1 | 1051 | 0.0e+00 | 1805.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene80147 | MS.gene032250 | PPI |
| MS.gene80147 | MS.gene54826 | PPI |
| MS.gene80147 | MS.gene73810 | PPI |
| MS.gene80147 | MS.gene026844 | PPI |
| MS.gene80147 | MS.gene060602 | PPI |
| MS.gene80147 | MS.gene060183 | PPI |
| MS.gene80147 | MS.gene36018 | PPI |
| MS.gene80147 | MS.gene043538 | PPI |
| MS.gene031613 | MS.gene80147 | PPI |
| MS.gene80147 | MS.gene31351 | PPI |
| MS.gene80147 | MS.gene006687 | PPI |
| MS.gene80147 | MS.gene028781 | PPI |
| MS.gene63756 | MS.gene80147 | PPI |
| MS.gene80147 | MS.gene34261 | PPI |
| MS.gene045495 | MS.gene80147 | PPI |
| MS.gene80147 | MS.gene007929 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80147.t1 | MTR_0002s0890 | 94.402 | 1054 | 19 | 4 | 1 | 1017 | 1 | 1051 | 0.0 | 2029 |
| MS.gene80147.t1 | MTR_1g094010 | 70.178 | 674 | 128 | 10 | 1 | 632 | 1 | 643 | 0.0 | 874 |
| MS.gene80147.t1 | MTR_1g094000 | 86.257 | 342 | 47 | 0 | 676 | 1017 | 1 | 342 | 0.0 | 601 |
| MS.gene80147.t1 | MTR_8g463920 | 47.049 | 627 | 279 | 7 | 425 | 1017 | 360 | 967 | 1.75e-179 | 548 |
| MS.gene80147.t1 | MTR_8g463920 | 45.989 | 187 | 100 | 1 | 100 | 285 | 155 | 341 | 4.44e-43 | 170 |
| MS.gene80147.t1 | MTR_4g079860 | 46.411 | 627 | 283 | 7 | 425 | 1017 | 359 | 966 | 9.45e-179 | 546 |
| MS.gene80147.t1 | MTR_4g079860 | 36.042 | 283 | 145 | 6 | 54 | 300 | 77 | 359 | 9.30e-44 | 172 |
| MS.gene80147.t1 | MTR_2g076670 | 46.486 | 626 | 282 | 7 | 426 | 1017 | 360 | 966 | 2.78e-176 | 540 |
| MS.gene80147.t1 | MTR_2g076670 | 45.263 | 190 | 103 | 1 | 97 | 285 | 151 | 340 | 1.56e-43 | 172 |
| MS.gene80147.t1 | MTR_2g092930 | 45.933 | 627 | 286 | 7 | 425 | 1017 | 359 | 966 | 1.59e-174 | 535 |
| MS.gene80147.t1 | MTR_2g092930 | 37.457 | 291 | 146 | 6 | 54 | 308 | 77 | 367 | 1.29e-45 | 178 |
| MS.gene80147.t1 | MTR_8g463920 | 51.233 | 527 | 235 | 6 | 425 | 948 | 360 | 867 | 1.39e-168 | 516 |
| MS.gene80147.t1 | MTR_8g463920 | 45.989 | 187 | 100 | 1 | 100 | 285 | 155 | 341 | 3.28e-43 | 170 |
| MS.gene80147.t1 | MTR_1g009850 | 34.623 | 491 | 198 | 10 | 529 | 1017 | 1 | 370 | 1.76e-68 | 234 |
| MS.gene80147.t1 | MTR_7g060030 | 51.471 | 204 | 25 | 3 | 40 | 243 | 1 | 130 | 3.57e-51 | 179 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80147.t1 | AT1G68750 | 72.391 | 1054 | 232 | 6 | 1 | 1017 | 1 | 1032 | 0.0 | 1511 |
| MS.gene80147.t1 | AT2G42600 | 46.720 | 625 | 283 | 6 | 425 | 1017 | 357 | 963 | 3.23e-178 | 545 |
| MS.gene80147.t1 | AT2G42600 | 38.843 | 242 | 134 | 3 | 51 | 278 | 93 | 334 | 3.99e-43 | 171 |
| MS.gene80147.t1 | AT2G42600 | 46.720 | 625 | 283 | 6 | 425 | 1017 | 357 | 963 | 3.23e-178 | 545 |
| MS.gene80147.t1 | AT2G42600 | 38.843 | 242 | 134 | 3 | 51 | 278 | 93 | 334 | 3.99e-43 | 171 |
| MS.gene80147.t1 | AT2G42600 | 46.720 | 625 | 283 | 6 | 425 | 1017 | 357 | 963 | 3.23e-178 | 545 |
| MS.gene80147.t1 | AT2G42600 | 38.843 | 242 | 134 | 3 | 51 | 278 | 93 | 334 | 3.99e-43 | 171 |
| MS.gene80147.t1 | AT1G53310 | 45.920 | 625 | 287 | 6 | 426 | 1017 | 361 | 967 | 4.33e-175 | 536 |
| MS.gene80147.t1 | AT1G53310 | 41.518 | 224 | 124 | 3 | 76 | 297 | 131 | 349 | 4.14e-44 | 174 |
| MS.gene80147.t1 | AT1G53310 | 45.920 | 625 | 287 | 6 | 426 | 1017 | 361 | 967 | 4.33e-175 | 536 |
| MS.gene80147.t1 | AT1G53310 | 41.518 | 224 | 124 | 3 | 76 | 297 | 131 | 349 | 4.14e-44 | 174 |
| MS.gene80147.t1 | AT1G53310 | 45.920 | 625 | 287 | 6 | 426 | 1017 | 361 | 967 | 4.33e-175 | 536 |
| MS.gene80147.t1 | AT1G53310 | 41.518 | 224 | 124 | 3 | 76 | 297 | 131 | 349 | 4.14e-44 | 174 |
| MS.gene80147.t1 | AT3G14940 | 46.571 | 627 | 281 | 8 | 426 | 1017 | 361 | 968 | 1.39e-174 | 535 |
| MS.gene80147.t1 | AT3G14940 | 42.857 | 224 | 121 | 3 | 76 | 297 | 131 | 349 | 3.76e-46 | 180 |
| MS.gene80147.t1 | AT3G14940 | 46.571 | 627 | 281 | 8 | 426 | 1017 | 361 | 968 | 1.39e-174 | 535 |
| MS.gene80147.t1 | AT3G14940 | 42.857 | 224 | 121 | 3 | 76 | 297 | 131 | 349 | 3.76e-46 | 180 |
Find 258 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAACTGGATCTTCCTATT+TGG | 0.142042 | 5.1:+42116855 | None:intergenic |
| TGATGCAATTACCAAGTATT+TGG | 0.149299 | 5.1:-42116170 | MS.gene80147:CDS |
| CATCCAAGAGCCAAACTTTA+TGG | 0.170496 | 5.1:+42119095 | None:intergenic |
| CCTCTTCCCTTTAAGCTCTT+TGG | 0.192525 | 5.1:+42116096 | None:intergenic |
| TTGAAGTAGGTGAGGAATTC+TGG | 0.196281 | 5.1:+42113553 | None:intergenic |
| ATGGTTGGGTATTCTGATTC+TGG | 0.227883 | 5.1:-42114577 | MS.gene80147:CDS |
| AATTACCAAGTATTTGGATA+TGG | 0.228014 | 5.1:-42116164 | MS.gene80147:CDS |
| CTTACAGTTTGTGGGGAATT+AGG | 0.242082 | 5.1:-42115301 | MS.gene80147:CDS |
| CCCGGCAGCAATACCATTAA+TGG | 0.242857 | 5.1:+42112982 | None:intergenic |
| CCAGGAAGATGAGGGAGTTT+TGG | 0.253716 | 5.1:+42116818 | None:intergenic |
| TTCTTAACCAAAGAGCTTAA+AGG | 0.257498 | 5.1:-42116103 | MS.gene80147:CDS |
| AGACCTGATTGAGATGGTTT+TGG | 0.259081 | 5.1:-42113287 | MS.gene80147:CDS |
| TTAATGCATGCAGCATCTTT+TGG | 0.273713 | 5.1:-42119626 | MS.gene80147:intron |
| GCTACCTTTGCTGTCACATT+TGG | 0.290322 | 5.1:+42119051 | None:intergenic |
| CTCCAAAAGCTTCTGAAAAC+TGG | 0.293397 | 5.1:+42116841 | None:intergenic |
| ATCACCATTTCTCGATCTTC+AGG | 0.297580 | 5.1:+42119577 | None:intergenic |
| AAAACTGGATCTTCCTATTT+GGG | 0.300543 | 5.1:+42116856 | None:intergenic |
| GTCCTCCTTATCACCATTAA+TGG | 0.305564 | 5.1:-42112995 | MS.gene80147:CDS |
| TGAAACAACCGACCAGCTTT+TGG | 0.306504 | 5.1:-42116504 | MS.gene80147:CDS |
| CCAAAACTCCCTCATCTTCC+TGG | 0.311533 | 5.1:-42116818 | MS.gene80147:CDS |
| CTACCTTTGCTGTCACATTT+GGG | 0.315237 | 5.1:+42119052 | None:intergenic |
| AGTAAAGAAGCCGTCTGATT+TGG | 0.315756 | 5.1:+42117331 | None:intergenic |
| GAGATGGTGCAGGCCAAGTT+TGG | 0.316061 | 5.1:-42113739 | MS.gene80147:CDS |
| ATCCGTAGAGTTTCTACCTT+TGG | 0.323193 | 5.1:-42116321 | MS.gene80147:CDS |
| TTGCAAAGAGTACGGTATTA+AGG | 0.329108 | 5.1:-42114488 | MS.gene80147:CDS |
| TCTCCTCTGTTATGAATCTA+TGG | 0.333593 | 5.1:-42116474 | MS.gene80147:intron |
| TTGAGCTCGCTGAACTTGTT+GGG | 0.334363 | 5.1:+42116945 | None:intergenic |
| TTTCGAGTTTCTGCAGAGAT+AGG | 0.334368 | 5.1:-42115790 | MS.gene80147:CDS |
| ACTTGCACTCCCATAAAGTT+TGG | 0.348788 | 5.1:-42119105 | MS.gene80147:CDS |
| TAACCTCTTGGTGTCCGTTA+TGG | 0.349444 | 5.1:+42114682 | None:intergenic |
| TTTGTCAGAGCACCCCTTCA+TGG | 0.350130 | 5.1:+42118376 | None:intergenic |
| TGGCAACCGACCTCTATATT+CGG | 0.359485 | 5.1:-42118427 | MS.gene80147:CDS |
| TCCTCTCTTTGAAACTGTTA+AGG | 0.360533 | 5.1:-42114778 | MS.gene80147:CDS |
| TTCGTTCTTCCTGCTTGGCT+TGG | 0.362195 | 5.1:-42113403 | MS.gene80147:CDS |
| TCTTAACCAAAGAGCTTAAA+GGG | 0.365000 | 5.1:-42116102 | MS.gene80147:CDS |
| TTGTTTGCAGAATCCCAAAT+AGG | 0.365790 | 5.1:-42116869 | MS.gene80147:CDS |
| GTTTGCAAACTGTATTATAA+AGG | 0.369503 | 5.1:+42119918 | None:intergenic |
| AGACTGTACTGCGGTAAAAC+TGG | 0.371633 | 5.1:+42113584 | None:intergenic |
| CTTCCTGCTTGGCTTGGAGT+TGG | 0.379581 | 5.1:-42113397 | MS.gene80147:CDS |
| CTGGGCGCTTTACTGCTGCC+TGG | 0.379709 | 5.1:-42114546 | MS.gene80147:CDS |
| AGCTTCTTCTAAGTTCATCT+TGG | 0.381249 | 5.1:+42120090 | None:intergenic |
| GCTTGGCTTGGAGTTGGAGC+AGG | 0.381867 | 5.1:-42113391 | MS.gene80147:CDS |
| GCTCTAGCTGGAAGTTTAGA+TGG | 0.385638 | 5.1:+42117307 | None:intergenic |
| CGAGGAGATGGCAGAGTTGT+TGG | 0.386160 | 5.1:-42120137 | MS.gene80147:CDS |
| GAGGAGCTGGTTCCGTGATC+AGG | 0.392098 | 5.1:-42114749 | MS.gene80147:CDS |
| ACTTCAACTGTGAGCAATGC+TGG | 0.395934 | 5.1:-42116989 | MS.gene80147:CDS |
| CTCTAGCAATCTTGTGGAGC+TGG | 0.398924 | 5.1:-42116381 | MS.gene80147:intron |
| TTGAAAGGTGCTTGCGAGAA+AGG | 0.407969 | 5.1:-42113367 | MS.gene80147:CDS |
| CTCCCATAAAGTTTGGCTCT+TGG | 0.409831 | 5.1:-42119098 | MS.gene80147:CDS |
| TTCCCGAGGACAATTCTATA+AGG | 0.410709 | 5.1:+42116788 | None:intergenic |
| CCAGATTCGTTCTTCCTGCT+TGG | 0.411430 | 5.1:-42113408 | MS.gene80147:CDS |
| TGGCGGAGGCCCAACTTATC+TGG | 0.413350 | 5.1:-42114428 | MS.gene80147:CDS |
| CCAAGCAGGAAGAACGAATC+TGG | 0.414731 | 5.1:+42113408 | None:intergenic |
| ATTACCAAGTATTTGGATAT+GGG | 0.416538 | 5.1:-42116163 | MS.gene80147:CDS |
| TTGGCACATGAAATTCTAGA+AGG | 0.416667 | 5.1:-42118344 | MS.gene80147:intron |
| TTCCCAAAACCATCTCAATC+AGG | 0.417745 | 5.1:+42113284 | None:intergenic |
| ATTGAGCTCGCTGAACTTGT+TGG | 0.419020 | 5.1:+42116944 | None:intergenic |
| ATCCAAGAGCCAAACTTTAT+GGG | 0.419228 | 5.1:+42119096 | None:intergenic |
| GGGAGTATTGGTCGTGGCGG+AGG | 0.421197 | 5.1:-42114442 | MS.gene80147:CDS |
| TGTTGGGGATGCATGACTAT+TGG | 0.424180 | 5.1:+42116961 | None:intergenic |
| AGATGGTGCAGGCCAAGTTT+GGG | 0.425318 | 5.1:-42113738 | MS.gene80147:CDS |
| TCTAGGACTTCTTTAACATC+TGG | 0.428875 | 5.1:+42115817 | None:intergenic |
| TGTTGATTAGAGTTGGAAGA+AGG | 0.430928 | 5.1:+42116911 | None:intergenic |
| AACCCTTCGGTCTACTGAGC+AGG | 0.432317 | 5.1:-42113764 | MS.gene80147:CDS |
| TATAATGACCGACCTGATCT+TGG | 0.436771 | 5.1:-42119601 | MS.gene80147:CDS |
| CAGAAACTCGAAACGTATCT+AGG | 0.437217 | 5.1:+42115800 | None:intergenic |
| TGGAGCCTATGTGATCTCTA+TGG | 0.438799 | 5.1:-42115755 | MS.gene80147:CDS |
| CATAAAGTTTGGCTCTTGGA+TGG | 0.439041 | 5.1:-42119094 | MS.gene80147:CDS |
| GCTATTCAGTCCCAGCCGCC+TGG | 0.440641 | 5.1:-42114406 | MS.gene80147:CDS |
| CTCTGACAAATTGTCTAGAT+TGG | 0.442124 | 5.1:-42118363 | MS.gene80147:CDS |
| AAGAAGTTGTTGATTAGAGT+TGG | 0.442500 | 5.1:+42116904 | None:intergenic |
| ACCATTAATGGTATTGCTGC+CGG | 0.442827 | 5.1:-42112983 | MS.gene80147:CDS |
| ATCAAGTGTTTCAGCATGCC+TGG | 0.443587 | 5.1:+42116189 | None:intergenic |
| GACACCTTCGTGCCATTCCC+TGG | 0.444073 | 5.1:-42113450 | MS.gene80147:CDS |
| TGAGAGAGATAACTTCAATA+TGG | 0.445525 | 5.1:-42119467 | MS.gene80147:CDS |
| ACAAACTTCTGCAGAACAAC+AGG | 0.445868 | 5.1:-42113132 | MS.gene80147:CDS |
| CTCCACTTGCAACATGTTCA+AGG | 0.446819 | 5.1:+42113066 | None:intergenic |
| CCAGCTCTAGCTTCATCAAC+TGG | 0.447508 | 5.1:+42119411 | None:intergenic |
| AGAAAAGCCACAACAGGAAT+CGG | 0.447845 | 5.1:-42113472 | MS.gene80147:CDS |
| TTTGACGGACTTCTATTCTC+TGG | 0.450218 | 5.1:+42117358 | None:intergenic |
| GACTGAATAGCCAGATAAGT+TGG | 0.452157 | 5.1:+42114418 | None:intergenic |
| CCATTACAGAGCCAGGCGGC+TGG | 0.452187 | 5.1:+42114395 | None:intergenic |
| GCTCATTTACCTTCTTGTGC+TGG | 0.452746 | 5.1:-42117286 | MS.gene80147:intron |
| TCTGATTCTGGTAAAGATGC+TGG | 0.453942 | 5.1:-42114565 | MS.gene80147:CDS |
| ATTCTATAAGGAGCAATTCC+AGG | 0.458187 | 5.1:+42116800 | None:intergenic |
| TACAGTCATCGTCGAAGCCT+TGG | 0.459975 | 5.1:+42120324 | None:intergenic |
| GACGATGACTGTAAGTTGCT+TGG | 0.460688 | 5.1:-42120314 | MS.gene80147:CDS |
| TTGAGTCCATGCGAATATCC+AGG | 0.461942 | 5.1:+42113432 | None:intergenic |
| GGAGAAGAGGTTCCAAAAGC+TGG | 0.468802 | 5.1:+42116492 | None:intergenic |
| AATCCTCACGTTTAGTCTCA+TGG | 0.468993 | 5.1:+42117389 | None:intergenic |
| TGGGCGCTTTACTGCTGCCT+GGG | 0.469321 | 5.1:-42114545 | MS.gene80147:CDS |
| TGTTTGTGGCAACCCAAACT+TGG | 0.470943 | 5.1:+42113726 | None:intergenic |
| GGAAACTTCTATCAATAGAT+TGG | 0.474910 | 5.1:-42114728 | MS.gene80147:CDS |
| GGCAACCGACCTCTATATTC+GGG | 0.474992 | 5.1:-42118426 | MS.gene80147:CDS |
| TTATAATACAGTTTGCAAAC+AGG | 0.476153 | 5.1:-42119915 | MS.gene80147:intron |
| AATGAAGCTTGACTTGCGTC+AGG | 0.477603 | 5.1:-42116289 | MS.gene80147:intron |
| ATTAAGGTTACTTTATTCCA+TGG | 0.479859 | 5.1:-42114472 | MS.gene80147:CDS |
| ACGAGAAGAAAAGCCACAAC+AGG | 0.479904 | 5.1:-42113478 | MS.gene80147:CDS |
| GCCTATATGCAGGTTATGGT+TGG | 0.479983 | 5.1:-42114592 | MS.gene80147:intron |
| AAGTTTGTCACCGTTATATG+TGG | 0.480819 | 5.1:-42113160 | MS.gene80147:CDS |
| AGTCAGCAATGCTTTAAAGA+AGG | 0.480964 | 5.1:-42119240 | MS.gene80147:intron |
| GAAGGTAAATGAGCTCTAGC+TGG | 0.482723 | 5.1:+42117295 | None:intergenic |
| ATAGTTGGTGAGAAGTTATC+CGG | 0.483396 | 5.1:+42112949 | None:intergenic |
| CCTATATGCAGGTTATGGTT+GGG | 0.483659 | 5.1:-42114591 | MS.gene80147:intron |
| CTTTATGTGTTTGTATTGCA+AGG | 0.486315 | 5.1:+42119753 | None:intergenic |
| GCCACACCTCAAGCAGAGCT+TGG | 0.486352 | 5.1:-42113526 | MS.gene80147:CDS |
| CAATACCATTAATGGTGATA+AGG | 0.487204 | 5.1:+42112990 | None:intergenic |
| TCCTATCTCACCTCTATACT+AGG | 0.489136 | 5.1:+42116061 | None:intergenic |
| CGATCTTCAGGACCAAGATC+AGG | 0.489148 | 5.1:+42119589 | None:intergenic |
| AAGAACTTGGTCGTCAACTA+AGG | 0.489824 | 5.1:-42113204 | MS.gene80147:CDS |
| TGGGGCGGCTACCTATGTTC+AGG | 0.490293 | 5.1:+42113500 | None:intergenic |
| CAATCTTGTGGAGCTGGAGC+TGG | 0.490881 | 5.1:-42116375 | MS.gene80147:CDS |
| GCACCAGGGATGTCGAGTCT+TGG | 0.491641 | 5.1:+42117145 | None:intergenic |
| GATGCACGTCTTACAGTTTG+TGG | 0.493990 | 5.1:-42115310 | MS.gene80147:CDS |
| AGAAATGGTGATAGAAGATC+TGG | 0.494628 | 5.1:-42119566 | MS.gene80147:intron |
| GAGTGCTTGTAATATGAGAC+AGG | 0.494896 | 5.1:-42120167 | MS.gene80147:CDS |
| AATTTCCTCTAGCAATCTTG+TGG | 0.496853 | 5.1:-42116387 | MS.gene80147:intron |
| CCATTAATGGTATTGCTGCC+GGG | 0.497379 | 5.1:-42112982 | MS.gene80147:CDS |
| TTCGAGTTTCTGCAGAGATA+GGG | 0.499286 | 5.1:-42115789 | MS.gene80147:CDS |
| AAATCCCATCTTGCAAAAGC+TGG | 0.501455 | 5.1:+42119951 | None:intergenic |
| CTCCTTATAGAATTGTCCTC+GGG | 0.504346 | 5.1:-42116790 | MS.gene80147:CDS |
| GTTAAGGACCTCAGAGGAGC+TGG | 0.506307 | 5.1:-42114762 | MS.gene80147:CDS |
| TTTATGGGAGTGCAAGTCAA+TGG | 0.506481 | 5.1:+42119111 | None:intergenic |
| CATGGCCGTGGAGGGAGTAT+TGG | 0.506592 | 5.1:-42114454 | MS.gene80147:CDS |
| CCTCGGGAATGTAAAAGATA+AGG | 0.509108 | 5.1:-42116774 | MS.gene80147:intron |
| TGGTCCTGAAGATCGAGAAA+TGG | 0.509757 | 5.1:-42119581 | MS.gene80147:CDS |
| CATTACAGAGCCAGGCGGCT+GGG | 0.509910 | 5.1:+42114396 | None:intergenic |
| ATGGTATTGCTGCCGGGATG+AGG | 0.512914 | 5.1:-42112976 | MS.gene80147:CDS |
| TATCATTGCAGGGAACCCTT+CGG | 0.513049 | 5.1:-42113777 | MS.gene80147:intron |
| TTGAGCTTTGTAAAGTTCCC+AGG | 0.514250 | 5.1:+42114528 | None:intergenic |
| ATGAGACTAAACGTGAGGAT+TGG | 0.515240 | 5.1:-42117387 | MS.gene80147:CDS |
| ATAAAGTTTGGCTCTTGGAT+GGG | 0.515444 | 5.1:-42119093 | MS.gene80147:CDS |
| GAGATTTGAGTTATCCATGA+AGG | 0.515713 | 5.1:-42118390 | MS.gene80147:CDS |
| GGAGTTGGAGCAGGTTTGAA+AGG | 0.516727 | 5.1:-42113382 | MS.gene80147:CDS |
| CGACCTCTATATTCGGGAAG+TGG | 0.517085 | 5.1:-42118420 | MS.gene80147:CDS |
| GAAAGTCCACTCTTTGTACA+TGG | 0.518151 | 5.1:+42113324 | None:intergenic |
| TGCAAGTGGAGATACTTAAG+AGG | 0.518732 | 5.1:-42113054 | MS.gene80147:CDS |
| GCTCCAACTCCAAGCCAAGC+AGG | 0.520197 | 5.1:+42113394 | None:intergenic |
| TAGCAGTTGATGTACATTTG+AGG | 0.521119 | 5.1:+42115732 | None:intergenic |
| CCAGCCGCCTGGCTCTGTAA+TGG | 0.521978 | 5.1:-42114395 | MS.gene80147:intron |
| CTAGCTTCATCAACTGGAGT+AGG | 0.522020 | 5.1:+42119417 | None:intergenic |
| TATCCACTTCCCGAATATAG+AGG | 0.522113 | 5.1:+42118417 | None:intergenic |
| ACTAGTTCCTCCTAGTATAG+AGG | 0.523919 | 5.1:-42116071 | MS.gene80147:intron |
| CAATACTCCCTCCACGGCCA+TGG | 0.524087 | 5.1:+42114455 | None:intergenic |
| ATATGGGTACATACAGTGAA+TGG | 0.527194 | 5.1:-42116147 | MS.gene80147:CDS |
| GAGTTGGAAGAAGGAGAGCG+TGG | 0.527361 | 5.1:+42116920 | None:intergenic |
| GCTCCTTATAGAATTGTCCT+CGG | 0.530711 | 5.1:-42116791 | MS.gene80147:CDS |
| TAGAGTTTCTACCTTTGGCA+TGG | 0.532015 | 5.1:-42116316 | MS.gene80147:CDS |
| GTTACTTTATTCCATGGCCG+TGG | 0.532100 | 5.1:-42114466 | MS.gene80147:CDS |
| TTTGTCGTGCCCACATATAA+CGG | 0.532851 | 5.1:+42113150 | None:intergenic |
| AGTTGTCTGACAGATGTTTG+TGG | 0.533030 | 5.1:+42113712 | None:intergenic |
| AGATTTGAGTTATCCATGAA+GGG | 0.534361 | 5.1:-42118389 | MS.gene80147:CDS |
| CCAAAGAGCTTAAAGGGAAG+AGG | 0.535345 | 5.1:-42116096 | MS.gene80147:CDS |
| TCCAAGCTCTGCTTGAGGTG+TGG | 0.536208 | 5.1:+42113525 | None:intergenic |
| AGAGTTGTTGGAGAAGCAGT+TGG | 0.536252 | 5.1:-42120125 | MS.gene80147:CDS |
| CTTTATTCCATGGCCGTGGA+GGG | 0.536693 | 5.1:-42114462 | MS.gene80147:CDS |
| TGTACCCATATCCAAATACT+TGG | 0.536867 | 5.1:+42116159 | None:intergenic |
| GGAATTAGGAAGAGAATGTC+CGG | 0.540328 | 5.1:-42115287 | MS.gene80147:CDS |
| ACTGAATAGCCAGATAAGTT+GGG | 0.541395 | 5.1:+42114419 | None:intergenic |
| ATGCACGTCTTACAGTTTGT+GGG | 0.541500 | 5.1:-42115309 | MS.gene80147:CDS |
| ACTTTATTCCATGGCCGTGG+AGG | 0.542132 | 5.1:-42114463 | MS.gene80147:CDS |
| GTCTACTGAGCAGGGAGAGA+TGG | 0.542351 | 5.1:-42113755 | MS.gene80147:CDS |
| ACAGGGAGGAATCGAGGAGA+TGG | 0.542664 | 5.1:-42120149 | MS.gene80147:CDS |
| ATCAACAACTTCTTGCTCAA+AGG | 0.542695 | 5.1:-42116895 | MS.gene80147:CDS |
| TCCACTTGCAACATGTTCAA+GGG | 0.543143 | 5.1:+42113067 | None:intergenic |
| TCCCTTGAACATGTTGCAAG+TGG | 0.546576 | 5.1:-42113068 | MS.gene80147:CDS |
| CTGATTCTGGTAAAGATGCT+GGG | 0.546993 | 5.1:-42114564 | MS.gene80147:CDS |
| ACAGAGAACTCGTAGACGAT+TGG | 0.547439 | 5.1:-42116576 | MS.gene80147:CDS |
| CTCCCTGCTCAGTAGACCGA+AGG | 0.549087 | 5.1:+42113761 | None:intergenic |
| TGATAGAAGTTTCCTGATCA+CGG | 0.551284 | 5.1:+42114737 | None:intergenic |
| CATCCAAGACTCGACATCCC+TGG | 0.552104 | 5.1:-42117148 | MS.gene80147:CDS |
| TAACTCACCATTACAGAGCC+AGG | 0.553845 | 5.1:+42114388 | None:intergenic |
| CATAATAGACCTGATTGAGA+TGG | 0.555044 | 5.1:-42113293 | MS.gene80147:CDS |
| GATTCATAACAGAGGAGAAG+AGG | 0.556501 | 5.1:+42116479 | None:intergenic |
| ATGTTCAAGGGATTGAGAAA+CGG | 0.557412 | 5.1:+42113079 | None:intergenic |
| GCCTTGGAAGGACATTTCCT+CGG | 0.558046 | 5.1:+42120340 | None:intergenic |
| CCAGTTGATGAAGCTAGAGC+TGG | 0.558556 | 5.1:-42119411 | MS.gene80147:intron |
| TGAGCTCGCTGAACTTGTTG+GGG | 0.558745 | 5.1:+42116946 | None:intergenic |
| AAGGTGTCCGATTCCTGTTG+TGG | 0.560047 | 5.1:+42113465 | None:intergenic |
| ACTTGATTGTAATCAGCACC+AGG | 0.561220 | 5.1:+42117130 | None:intergenic |
| GTTGTTTCATAGTAATCAGA+AGG | 0.564434 | 5.1:+42116518 | None:intergenic |
| CCATTCCCTGGATATTCGCA+TGG | 0.564946 | 5.1:-42113438 | MS.gene80147:CDS |
| GGAGCAATTCCAGGAAGATG+AGG | 0.566139 | 5.1:+42116809 | None:intergenic |
| TTACAATCAAGTCAATATCA+AGG | 0.566345 | 5.1:-42117119 | MS.gene80147:intron |
| GGAGTGCAAGTCAATGGAAG+TGG | 0.566520 | 5.1:+42119117 | None:intergenic |
| GCCGAGGAAATGTCCTTCCA+AGG | 0.571295 | 5.1:-42120341 | MS.gene80147:CDS |
| CTGACTCGACGTAAATAATG+AGG | 0.573363 | 5.1:+42119257 | None:intergenic |
| CAGTGTGACAGGAATCTGCC+AGG | 0.574647 | 5.1:-42116207 | MS.gene80147:intron |
| GAGCAATTCCAGGAAGATGA+GGG | 0.576413 | 5.1:+42116810 | None:intergenic |
| TCTCCCAGGATTGAATATTG+TGG | 0.578471 | 5.1:-42119303 | MS.gene80147:intron |
| GTACGTCGATTAATTTGTGT+GGG | 0.579325 | 5.1:+42119775 | None:intergenic |
| TCCTTAACAGTTTCAAAGAG+AGG | 0.584204 | 5.1:+42114777 | None:intergenic |
| AAGTTTGGCTCTTGGATGGG+AGG | 0.585622 | 5.1:-42119090 | MS.gene80147:CDS |
| TGCCAAAGGTAGAAACTCTA+CGG | 0.585890 | 5.1:+42116319 | None:intergenic |
| TGCAGTAGAGCTCTTACAGA+AGG | 0.591503 | 5.1:-42115332 | MS.gene80147:CDS |
| TATGAGACAGGGAGGAATCG+AGG | 0.593271 | 5.1:-42120155 | MS.gene80147:CDS |
| TCAGAGAAGAGACAAGAACT+TGG | 0.593854 | 5.1:-42113217 | MS.gene80147:CDS |
| TTAGGAAGAGAATGTCCGGC+TGG | 0.594796 | 5.1:-42115283 | MS.gene80147:CDS |
| GGTACGTCGATTAATTTGTG+TGG | 0.595875 | 5.1:+42119774 | None:intergenic |
| GTGGCTGCTTGCAAAGAGTA+CGG | 0.595935 | 5.1:-42114496 | MS.gene80147:CDS |
| CCATGCGAATATCCAGGGAA+TGG | 0.598516 | 5.1:+42113438 | None:intergenic |
| ATATTGTGGAGCAGTCACTC+TGG | 0.600388 | 5.1:-42119289 | MS.gene80147:CDS |
| GGAACTTTACAAAGCTCAAG+AGG | 0.602528 | 5.1:-42114524 | MS.gene80147:CDS |
| ACGATTGGAACTGCTTCTAG+AGG | 0.605318 | 5.1:-42116561 | MS.gene80147:CDS |
| CAAAGCTCAAGAGGATGTAG+TGG | 0.607111 | 5.1:-42114515 | MS.gene80147:CDS |
| TGAGCAGGGAGAGATGGTGC+AGG | 0.610093 | 5.1:-42113749 | MS.gene80147:CDS |
| TACCATTAATGGTGATAAGG+AGG | 0.611172 | 5.1:+42112993 | None:intergenic |
| GGAGCTGGTGTGTTAGCTGA+TGG | 0.612816 | 5.1:-42116360 | MS.gene80147:CDS |
| AGGTGTGGCCTCATTGAAGT+AGG | 0.612841 | 5.1:+42113540 | None:intergenic |
| ACCCTTCGGTCTACTGAGCA+GGG | 0.612866 | 5.1:-42113763 | MS.gene80147:CDS |
| AGATGGACTTACGTTCCAGC+CGG | 0.614237 | 5.1:+42115268 | None:intergenic |
| TCATGTGTACCAGCACAAGA+AGG | 0.618233 | 5.1:+42117277 | None:intergenic |
| TAAAAGCCATGTACAAAGAG+TGG | 0.619720 | 5.1:-42113330 | MS.gene80147:CDS |
| TGCACGTCTTACAGTTTGTG+GGG | 0.622759 | 5.1:-42115308 | MS.gene80147:CDS |
| TGAGTCCATGCGAATATCCA+GGG | 0.623669 | 5.1:+42113433 | None:intergenic |
| TTATCCGGTGTTCCTCATCC+CGG | 0.624760 | 5.1:+42112964 | None:intergenic |
| CACTTCCCGAATATAGAGGT+CGG | 0.625274 | 5.1:+42118421 | None:intergenic |
| GAGATAGGGAGTGATTCACT+TGG | 0.625975 | 5.1:-42115775 | MS.gene80147:CDS |
| AGTTTGTCACCGTTATATGT+GGG | 0.626288 | 5.1:-42113159 | MS.gene80147:CDS |
| GAGCTTGGATTCCTGAACAT+AGG | 0.626377 | 5.1:-42113511 | MS.gene80147:CDS |
| CTTCATTAACACCATGCCAA+AGG | 0.626725 | 5.1:+42116305 | None:intergenic |
| GTCATCGTCGAAGCCTTGGA+AGG | 0.626844 | 5.1:+42120328 | None:intergenic |
| TCCCTGCTCAGTAGACCGAA+GGG | 0.626928 | 5.1:+42113762 | None:intergenic |
| CACGACCAATACTCCCTCCA+CGG | 0.631814 | 5.1:+42114449 | None:intergenic |
| TGCAGAACAACAGGACATTG+AGG | 0.632534 | 5.1:-42113123 | MS.gene80147:CDS |
| AAACCATAACGGACACCAAG+AGG | 0.633603 | 5.1:-42114685 | MS.gene80147:intron |
| CGTGGAGGGAGTATTGGTCG+TGG | 0.634574 | 5.1:-42114448 | MS.gene80147:CDS |
| TGGCCTCATTGAAGTAGGTG+AGG | 0.636182 | 5.1:+42113545 | None:intergenic |
| TCAGAAGGATCAAGTTCACA+TGG | 0.638514 | 5.1:+42116533 | None:intergenic |
| TATCTCTCCATGCAGCACAC+GGG | 0.645122 | 5.1:-42119144 | MS.gene80147:intron |
| TTCCTCGGCAATGTCATCAG+TGG | 0.645816 | 5.1:+42120355 | None:intergenic |
| TGGATGGGAGGTGATAGAGA+TGG | 0.646610 | 5.1:-42119078 | MS.gene80147:CDS |
| AGGAATCCAAGCTCTGCTTG+AGG | 0.651486 | 5.1:+42113520 | None:intergenic |
| GATAACTTCAATATGGCAGA+CGG | 0.653684 | 5.1:-42119460 | MS.gene80147:CDS |
| TCTGTAAGAGCTCTACTGCA+AGG | 0.655051 | 5.1:+42115335 | None:intergenic |
| GATTTGAGTTATCCATGAAG+GGG | 0.657395 | 5.1:-42118388 | MS.gene80147:CDS |
| TCACGGAACCAGCTCCTCTG+AGG | 0.659085 | 5.1:+42114754 | None:intergenic |
| AAACCCAAATGTGACAGCAA+AGG | 0.665409 | 5.1:-42119055 | MS.gene80147:intron |
| CACCACTGATGACATTGCCG+AGG | 0.666464 | 5.1:-42120357 | MS.gene80147:CDS |
| TATCTCACCTCTATACTAGG+AGG | 0.670109 | 5.1:+42116064 | None:intergenic |
| TCTATACTAGGAGGAACTAG+TGG | 0.671109 | 5.1:+42116073 | None:intergenic |
| AAGAGGTTCCAAAAGCTGGT+CGG | 0.673422 | 5.1:+42116496 | None:intergenic |
| GTACCATAGATTCATAACAG+AGG | 0.673498 | 5.1:+42116471 | None:intergenic |
| GCTGCCGGGATGAGGAACAC+CGG | 0.675028 | 5.1:-42112968 | MS.gene80147:CDS |
| TGTCCAACATAGGCTTCGAG+TGG | 0.683701 | 5.1:-42114802 | MS.gene80147:intron |
| ATTCCTCACCTACTTCAATG+AGG | 0.689393 | 5.1:-42113548 | MS.gene80147:CDS |
| TGAGGCCATAGAGATCACAT+AGG | 0.689767 | 5.1:+42115750 | None:intergenic |
| TAACCATGAGACTAAACGTG+AGG | 0.693529 | 5.1:-42117392 | MS.gene80147:CDS |
| GAAACTGTTAAGGACCTCAG+AGG | 0.696978 | 5.1:-42114768 | MS.gene80147:CDS |
| GCTTGTAATATGAGACAGGG+AGG | 0.701576 | 5.1:-42120163 | MS.gene80147:CDS |
| CTTGATTGTAATCAGCACCA+GGG | 0.701799 | 5.1:+42117131 | None:intergenic |
| TATTGCAAAGCAGTATGACG+AGG | 0.705157 | 5.1:-42113248 | MS.gene80147:CDS |
| AGTGCTTGTAATATGAGACA+GGG | 0.705612 | 5.1:-42120166 | MS.gene80147:CDS |
| GGAGGGAGTATTGGTCGTGG+CGG | 0.711922 | 5.1:-42114445 | MS.gene80147:CDS |
| CTTCAGGACCAAGATCAGGT+CGG | 0.713884 | 5.1:+42119593 | None:intergenic |
| AGAACAACAGGACATTGAGG+AGG | 0.722574 | 5.1:-42113120 | MS.gene80147:CDS |
| ATATCCAGGGAATGGCACGA+AGG | 0.730973 | 5.1:+42113446 | None:intergenic |
| CTCACCATTACAGAGCCAGG+CGG | 0.784020 | 5.1:+42114391 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 42112964 | 42120387 | 42112964 | ID=MS.gene80147 |
| chr5.1 | mRNA | 42112964 | 42120387 | 42112964 | ID=MS.gene80147.t1;Parent=MS.gene80147 |
| chr5.1 | exon | 42120283 | 42120387 | 42120283 | ID=MS.gene80147.t1.exon1;Parent=MS.gene80147.t1 |
| chr5.1 | CDS | 42120283 | 42120387 | 42120283 | ID=cds.MS.gene80147.t1;Parent=MS.gene80147.t1 |
| chr5.1 | exon | 42120068 | 42120188 | 42120068 | ID=MS.gene80147.t1.exon2;Parent=MS.gene80147.t1 |
| chr5.1 | CDS | 42120068 | 42120188 | 42120068 | ID=cds.MS.gene80147.t1;Parent=MS.gene80147.t1 |
| chr5.1 | exon | 42119916 | 42120013 | 42119916 | ID=MS.gene80147.t1.exon3;Parent=MS.gene80147.t1 |
| chr5.1 | CDS | 42119916 | 42120013 | 42119916 | ID=cds.MS.gene80147.t1;Parent=MS.gene80147.t1 |
| chr5.1 | exon | 42119747 | 42119824 | 42119747 | ID=MS.gene80147.t1.exon4;Parent=MS.gene80147.t1 |
| chr5.1 | CDS | 42119747 | 42119824 | 42119747 | ID=cds.MS.gene80147.t1;Parent=MS.gene80147.t1 |
| chr5.1 | exon | 42119567 | 42119635 | 42119567 | ID=MS.gene80147.t1.exon5;Parent=MS.gene80147.t1 |
| chr5.1 | CDS | 42119567 | 42119635 | 42119567 | ID=cds.MS.gene80147.t1;Parent=MS.gene80147.t1 |
| chr5.1 | exon | 42119412 | 42119490 | 42119412 | ID=MS.gene80147.t1.exon6;Parent=MS.gene80147.t1 |
| chr5.1 | CDS | 42119412 | 42119490 | 42119412 | ID=cds.MS.gene80147.t1;Parent=MS.gene80147.t1 |
| chr5.1 | exon | 42119241 | 42119317 | 42119241 | ID=MS.gene80147.t1.exon7;Parent=MS.gene80147.t1 |
| chr5.1 | CDS | 42119241 | 42119317 | 42119241 | ID=cds.MS.gene80147.t1;Parent=MS.gene80147.t1 |
| chr5.1 | exon | 42119056 | 42119151 | 42119056 | ID=MS.gene80147.t1.exon8;Parent=MS.gene80147.t1 |
| chr5.1 | CDS | 42119056 | 42119151 | 42119056 | ID=cds.MS.gene80147.t1;Parent=MS.gene80147.t1 |
| chr5.1 | exon | 42118345 | 42118483 | 42118345 | ID=MS.gene80147.t1.exon9;Parent=MS.gene80147.t1 |
| chr5.1 | CDS | 42118345 | 42118483 | 42118345 | ID=cds.MS.gene80147.t1;Parent=MS.gene80147.t1 |
| chr5.1 | exon | 42117287 | 42117418 | 42117287 | ID=MS.gene80147.t1.exon10;Parent=MS.gene80147.t1 |
| chr5.1 | CDS | 42117287 | 42117418 | 42117287 | ID=cds.MS.gene80147.t1;Parent=MS.gene80147.t1 |
| chr5.1 | exon | 42117120 | 42117187 | 42117120 | ID=MS.gene80147.t1.exon11;Parent=MS.gene80147.t1 |
| chr5.1 | CDS | 42117120 | 42117187 | 42117120 | ID=cds.MS.gene80147.t1;Parent=MS.gene80147.t1 |
| chr5.1 | exon | 42116775 | 42117038 | 42116775 | ID=MS.gene80147.t1.exon12;Parent=MS.gene80147.t1 |
| chr5.1 | CDS | 42116775 | 42117038 | 42116775 | ID=cds.MS.gene80147.t1;Parent=MS.gene80147.t1 |
| chr5.1 | exon | 42116475 | 42116600 | 42116475 | ID=MS.gene80147.t1.exon13;Parent=MS.gene80147.t1 |
| chr5.1 | CDS | 42116475 | 42116600 | 42116475 | ID=cds.MS.gene80147.t1;Parent=MS.gene80147.t1 |
| chr5.1 | exon | 42116290 | 42116397 | 42116290 | ID=MS.gene80147.t1.exon14;Parent=MS.gene80147.t1 |
| chr5.1 | CDS | 42116290 | 42116397 | 42116290 | ID=cds.MS.gene80147.t1;Parent=MS.gene80147.t1 |
| chr5.1 | exon | 42116072 | 42116218 | 42116072 | ID=MS.gene80147.t1.exon15;Parent=MS.gene80147.t1 |
| chr5.1 | CDS | 42116072 | 42116218 | 42116072 | ID=cds.MS.gene80147.t1;Parent=MS.gene80147.t1 |
| chr5.1 | exon | 42115747 | 42115845 | 42115747 | ID=MS.gene80147.t1.exon16;Parent=MS.gene80147.t1 |
| chr5.1 | CDS | 42115747 | 42115845 | 42115747 | ID=cds.MS.gene80147.t1;Parent=MS.gene80147.t1 |
| chr5.1 | exon | 42115280 | 42115368 | 42115280 | ID=MS.gene80147.t1.exon17;Parent=MS.gene80147.t1 |
| chr5.1 | CDS | 42115280 | 42115368 | 42115280 | ID=cds.MS.gene80147.t1;Parent=MS.gene80147.t1 |
| chr5.1 | exon | 42114686 | 42114812 | 42114686 | ID=MS.gene80147.t1.exon18;Parent=MS.gene80147.t1 |
| chr5.1 | CDS | 42114686 | 42114812 | 42114686 | ID=cds.MS.gene80147.t1;Parent=MS.gene80147.t1 |
| chr5.1 | exon | 42114396 | 42114602 | 42114396 | ID=MS.gene80147.t1.exon19;Parent=MS.gene80147.t1 |
| chr5.1 | CDS | 42114396 | 42114602 | 42114396 | ID=cds.MS.gene80147.t1;Parent=MS.gene80147.t1 |
| chr5.1 | exon | 42112964 | 42113788 | 42112964 | ID=MS.gene80147.t1.exon20;Parent=MS.gene80147.t1 |
| chr5.1 | CDS | 42112964 | 42113788 | 42112964 | ID=cds.MS.gene80147.t1;Parent=MS.gene80147.t1 |
| Gene Sequence |
| Protein sequence |