AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene80207

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80207.t1 MTR_3g106290 98.942 189 2 0 1 189 1 189 1.31e-141 392
MS.gene80207.t1 MTR_4g008860 67.188 192 55 5 1 184 1 192 2.84e-77 229
MS.gene80207.t1 MTR_4g010640 58.586 99 26 1 6 89 5 103 2.11e-34 121
MS.gene80207.t1 MTR_4g114570 58.947 95 28 1 6 89 5 99 6.22e-33 117
MS.gene80207.t1 MTR_2g103700 65.556 90 25 1 6 89 5 94 2.65e-32 114
MS.gene80207.t1 MTR_3g074130 38.095 147 77 3 1 139 143 283 4.82e-24 97.1
MS.gene80207.t1 MTR_2g078680 48.598 107 42 3 7 100 30 136 9.72e-24 93.6
MS.gene80207.t1 MTR_8g092460 56.164 73 32 0 3 75 140 212 9.86e-24 95.9
MS.gene80207.t1 MTR_8g090350 55.422 83 29 2 2 77 107 188 5.10e-23 93.2
MS.gene80207.t1 MTR_1g090170 56.790 81 34 1 8 87 152 232 6.41e-23 93.6
MS.gene80207.t1 MTR_5g062700 52.874 87 38 1 3 86 168 254 6.82e-23 94.4
MS.gene80207.t1 MTR_2g089170 71.930 57 16 0 8 64 65 121 7.70e-23 90.5
MS.gene80207.t1 MTR_1g012470 37.681 207 80 5 5 175 4 197 9.25e-23 90.5
MS.gene80207.t1 MTR_1g090170 57.500 80 33 1 8 86 239 318 1.30e-22 94.0
MS.gene80207.t1 MTR_3g053690 63.333 60 22 0 5 64 24 83 4.87e-22 89.4
MS.gene80207.t1 MTR_7g020980 64.912 57 20 0 8 64 51 107 5.44e-22 88.2
MS.gene80207.t1 MTR_7g021010 64.912 57 20 0 8 64 51 107 7.64e-22 87.8
MS.gene80207.t1 MTR_3g107380 53.846 104 32 2 1 88 1 104 8.43e-22 88.6
MS.gene80207.t1 MTR_4g078710 57.143 70 29 1 8 76 28 97 8.76e-22 88.6
MS.gene80207.t1 MTR_7g021010 64.912 57 20 0 8 64 12 68 8.85e-22 86.7
MS.gene80207.t1 MTR_6g012970 56.471 85 32 2 3 86 33 113 1.83e-21 90.9
MS.gene80207.t1 MTR_2g435590 55.072 69 31 0 8 76 96 164 1.88e-21 88.6
MS.gene80207.t1 MTR_2g090235 60.563 71 21 1 1 64 204 274 3.00e-21 90.1
MS.gene80207.t1 MTR_2g014340 59.016 61 25 0 5 65 16 76 5.89e-21 85.9
MS.gene80207.t1 MTR_0939s0010 66.667 57 19 0 8 64 65 121 1.01e-20 85.5
MS.gene80207.t1 MTR_7g084370 58.904 73 30 0 7 79 41 113 1.45e-20 86.7
MS.gene80207.t1 MTR_7g011630 51.163 86 40 1 3 88 37 120 1.65e-20 88.2
MS.gene80207.t1 MTR_5g083340 63.333 60 22 0 5 64 82 141 2.08e-20 87.8
MS.gene80207.t1 MTR_5g082950 66.667 57 19 0 7 63 65 121 2.36e-20 87.0
MS.gene80207.t1 MTR_7g092190 63.793 58 21 0 8 65 30 87 3.06e-20 85.9
MS.gene80207.t1 MTR_4g086220 66.667 57 19 0 8 64 96 152 3.73e-20 84.7
MS.gene80207.t1 MTR_2g105380 48.837 86 38 2 5 84 114 199 4.41e-20 86.7
MS.gene80207.t1 MTR_2g014300 61.667 60 23 0 8 67 15 74 4.49e-20 83.2
MS.gene80207.t1 MTR_8g022820 58.333 60 25 0 5 64 121 180 6.86e-20 86.3
MS.gene80207.t1 MTR_8g022820 58.333 60 25 0 5 64 121 180 6.86e-20 86.3
MS.gene80207.t1 MTR_8g022820 58.333 60 25 0 5 64 120 179 6.88e-20 86.3
MS.gene80207.t1 MTR_1g087920 61.404 57 22 0 8 64 77 133 7.67e-20 85.1
MS.gene80207.t1 MTR_4g086160 64.912 57 20 0 8 64 96 152 8.97e-20 83.6
MS.gene80207.t1 MTR_4g086165 61.667 60 23 0 5 64 79 138 1.00e-19 83.2
MS.gene80207.t1 MTR_5g083330 56.944 72 28 1 5 76 32 100 1.18e-19 84.3
MS.gene80207.t1 MTR_4g086190 64.912 57 20 0 8 64 96 152 1.75e-19 82.8
MS.gene80207.t1 MTR_4g111915 58.333 60 25 0 5 64 50 109 2.31e-19 80.5
MS.gene80207.t1 MTR_5g009620 52.632 76 35 1 4 79 108 182 2.82e-19 83.6
MS.gene80207.t1 MTR_5g032820 66.102 59 20 0 7 65 45 103 4.38e-19 83.6
MS.gene80207.t1 MTR_4g112490 58.333 60 25 0 5 64 50 109 9.42e-19 80.5
MS.gene80207.t1 MTR_8g099215 48.889 90 44 1 6 93 105 194 9.89e-19 82.0
MS.gene80207.t1 MTR_4g082345 60.656 61 24 0 3 63 43 103 9.91e-19 82.4
MS.gene80207.t1 MTR_5g012910 63.158 57 21 0 8 64 28 84 1.26e-18 79.3
MS.gene80207.t1 MTR_5g085100 60.345 58 23 0 7 64 45 102 1.78e-18 81.3
MS.gene80207.t1 MTR_2g016730 58.065 62 26 0 2 63 17 78 1.84e-18 81.6
MS.gene80207.t1 MTR_4g100380 53.425 73 33 1 6 77 143 215 1.94e-18 80.9
MS.gene80207.t1 MTR_3g110205 64.912 57 20 0 8 64 43 99 2.00e-18 79.0
MS.gene80207.t1 MTR_6g088405 64.912 57 20 0 8 64 44 100 2.04e-18 79.7
MS.gene80207.t1 MTR_4g035430 63.158 57 21 0 8 64 32 88 2.20e-18 79.7
MS.gene80207.t1 MTR_5g075570 53.125 64 30 0 1 64 117 180 2.82e-18 80.5
MS.gene80207.t1 MTR_8g069360 64.407 59 21 0 7 65 43 101 3.48e-18 81.6
MS.gene80207.t1 MTR_7g085810 62.069 58 22 0 6 63 28 85 3.88e-18 79.7
MS.gene80207.t1 MTR_8g006815 54.286 70 29 2 6 72 94 163 5.47e-18 78.2
MS.gene80207.t1 MTR_8g085960 43.617 94 50 1 1 94 18 108 6.37e-18 79.0
MS.gene80207.t1 MTR_5g085070 60.345 58 23 0 7 64 50 107 6.80e-18 79.3
MS.gene80207.t1 MTR_7g046260 64.912 57 20 0 8 64 61 117 7.86e-18 78.6
MS.gene80207.t1 MTR_7g117690 59.649 57 23 0 8 64 28 84 8.26e-18 77.0
MS.gene80207.t1 MTR_8g013860 59.677 62 25 0 8 69 47 108 8.33e-18 77.8
MS.gene80207.t1 MTR_1g014780 31.073 177 107 3 8 169 38 214 8.69e-18 78.2
MS.gene80207.t1 MTR_3g090760 58.621 58 24 0 6 63 111 168 9.09e-18 80.1
MS.gene80207.t1 MTR_8g102800 64.912 57 20 0 8 64 37 93 1.02e-17 78.2
MS.gene80207.t1 MTR_4g100650 63.158 57 21 0 8 64 74 130 1.10e-17 78.6
MS.gene80207.t1 MTR_2g043050 55.000 60 27 0 8 67 19 78 1.83e-17 77.0
MS.gene80207.t1 MTR_4g100420 46.512 86 41 2 5 89 154 235 2.12e-17 78.6
MS.gene80207.t1 MTR_1g014860 56.667 60 26 0 8 67 22 81 2.20e-17 77.0
MS.gene80207.t1 MTR_4g119270 54.688 64 29 0 7 70 52 115 2.49e-17 78.6
MS.gene80207.t1 MTR_1g014820 34.911 169 94 5 8 164 27 191 2.82e-17 77.4
MS.gene80207.t1 MTR_4g100450 56.923 65 27 1 5 68 151 215 4.30e-17 77.8
MS.gene80207.t1 MTR_7g070220 58.730 63 19 1 8 63 78 140 4.61e-17 78.6
MS.gene80207.t1 MTR_3g102100 56.140 57 25 0 8 64 45 101 4.85e-17 75.1
MS.gene80207.t1 MTR_1g070070 60.000 60 23 1 7 65 20 79 4.86e-17 74.3
MS.gene80207.t1 MTR_1g014800 55.000 60 27 0 8 67 31 90 5.21e-17 75.9
MS.gene80207.t1 MTR_8g027465 57.895 57 24 0 8 64 39 95 5.56e-17 75.1
MS.gene80207.t1 MTR_6g029180 57.627 59 25 0 5 63 30 88 6.88e-17 77.0
MS.gene80207.t1 MTR_2g101340 61.404 57 22 0 8 64 41 97 8.16e-17 75.1
MS.gene80207.t1 MTR_5g016750 42.857 84 45 1 5 85 22 105 1.08e-16 74.3
MS.gene80207.t1 MTR_8g006410 61.404 57 22 0 8 64 52 108 1.12e-16 74.7
MS.gene80207.t1 MTR_2g043030 53.333 60 28 0 8 67 19 78 1.21e-16 74.7
MS.gene80207.t1 MTR_1g048610 54.839 62 27 1 6 66 87 148 1.26e-16 75.1
MS.gene80207.t1 MTR_8g032610 58.621 58 24 0 6 63 25 82 1.91e-16 75.9
MS.gene80207.t1 MTR_4g088005 53.968 63 28 1 5 66 54 116 1.97e-16 72.0
MS.gene80207.t1 MTR_2g019750 36.842 114 65 2 7 120 49 155 2.08e-16 75.5
MS.gene80207.t1 MTR_3g105510 43.590 78 41 1 3 77 32 109 3.20e-16 74.3
MS.gene80207.t1 MTR_1g028560 50.000 74 35 1 5 76 112 185 3.33e-16 75.5
MS.gene80207.t1 MTR_1g097190 53.521 71 31 2 2 71 17 86 3.40e-16 72.0
MS.gene80207.t1 MTR_1g074310 54.688 64 28 1 2 64 15 78 4.01e-16 72.0
MS.gene80207.t1 MTR_8g006840 49.296 71 35 1 8 77 125 195 7.70e-16 72.4
MS.gene80207.t1 MTR_2g015040 54.098 61 27 1 5 64 60 120 1.34e-15 70.9
MS.gene80207.t1 MTR_1g019110 54.386 57 26 0 8 64 44 100 1.44e-15 71.2
MS.gene80207.t1 MTR_2g043040 51.667 60 29 0 8 67 19 78 1.92e-15 72.0
MS.gene80207.t1 MTR_2g015050 53.968 63 28 1 3 64 129 191 3.10e-15 72.0
MS.gene80207.t1 MTR_4g054360 56.897 58 24 1 8 64 124 181 3.51e-15 72.0
MS.gene80207.t1 MTR_1g090290 50.704 71 28 2 1 64 100 170 5.88e-15 70.1
MS.gene80207.t1 MTR_7g081815 52.459 61 28 1 6 65 59 119 6.09e-15 70.1
MS.gene80207.t1 MTR_4g054740 55.172 58 25 1 8 64 97 154 6.39e-15 70.9
MS.gene80207.t1 MTR_2g438180 59.322 59 23 1 7 64 13 71 8.47e-15 68.2
MS.gene80207.t1 MTR_7g081795 52.459 61 28 1 6 65 58 118 8.69e-15 69.7
MS.gene80207.t1 MTR_7g096750 57.377 61 25 1 5 64 17 77 9.40e-15 68.2
MS.gene80207.t1 MTR_1g070035 51.613 62 29 1 5 65 74 135 9.83e-15 70.1
MS.gene80207.t1 MTR_7g081805 52.459 61 28 1 6 65 59 119 1.01e-14 69.7
MS.gene80207.t1 MTR_8g006825 50.820 61 29 1 6 65 94 154 1.88e-14 68.9
MS.gene80207.t1 MTR_1g074230 59.322 59 23 1 7 64 18 76 2.30e-14 67.0
MS.gene80207.t1 MTR_7g096700 56.667 60 25 1 7 65 19 78 2.51e-14 67.4
MS.gene80207.t1 MTR_2g043020 50.000 60 30 0 8 67 19 78 2.95e-14 68.2
MS.gene80207.t1 MTR_1g101600 60.714 56 22 0 8 63 41 96 3.21e-14 68.2
MS.gene80207.t1 MTR_6g465460 60.714 56 22 0 8 63 54 109 3.30e-14 69.3
MS.gene80207.t1 MTR_6g465850 60.714 56 22 0 8 63 63 118 3.64e-14 69.3
MS.gene80207.t1 MTR_6g465510 60.714 56 22 0 8 63 33 88 4.21e-14 68.2
MS.gene80207.t1 MTR_3g105480 46.479 71 35 1 10 77 33 103 4.50e-14 68.2
MS.gene80207.t1 MTR_5g008590 68.421 57 18 0 8 64 11 67 5.64e-14 67.4
MS.gene80207.t1 MTR_6g465690 58.929 56 23 0 8 63 63 118 5.97e-14 68.6
MS.gene80207.t1 MTR_6g465450 58.929 56 23 0 8 63 54 109 5.97e-14 68.2
MS.gene80207.t1 MTR_6g465530 60.714 56 22 0 8 63 33 88 7.30e-14 67.0
MS.gene80207.t1 MTR_6g466130 58.929 56 23 0 8 63 66 121 9.28e-14 67.4
MS.gene80207.t1 MTR_6g466000 58.929 56 23 0 8 63 57 112 1.31e-13 67.0
MS.gene80207.t1 MTR_1g069985 53.333 60 27 1 5 63 72 131 1.51e-13 66.6
MS.gene80207.t1 MTR_1g105400 46.774 62 32 1 3 64 110 170 1.55e-13 68.2
MS.gene80207.t1 MTR_6g465430 58.929 56 23 0 8 63 54 109 2.04e-13 66.6
MS.gene80207.t1 MTR_4g054860 33.117 154 87 5 9 158 132 273 3.74e-13 66.2
MS.gene80207.t1 MTR_6g465420 57.143 56 24 0 8 63 54 109 3.86e-13 66.2
MS.gene80207.t1 MTR_1g006660 65.517 58 20 0 8 65 47 104 3.99e-13 66.2
MS.gene80207.t1 MTR_7g028925 53.333 60 25 1 8 67 29 85 5.10e-13 62.4
MS.gene80207.t1 MTR_3g095190 62.903 62 23 0 5 66 167 228 5.70e-13 66.6
MS.gene80207.t1 MTR_1g070015 54.386 57 25 1 8 63 84 140 6.03e-13 65.1
MS.gene80207.t1 MTR_6g088425 66.667 57 19 0 8 64 49 105 6.73e-13 65.1
MS.gene80207.t1 MTR_1g070020 50.000 62 30 1 3 63 65 126 7.10e-13 64.7
MS.gene80207.t1 MTR_1g074250 53.333 60 26 1 7 64 18 77 8.50e-13 62.8
MS.gene80207.t1 MTR_1g070000 54.545 55 24 1 10 63 86 140 8.65e-13 64.7
MS.gene80207.t1 MTR_3g112440 57.377 61 26 0 4 64 35 95 1.21e-12 64.3
MS.gene80207.t1 MTR_1g023170 59.649 57 23 0 8 64 40 96 1.36e-12 64.7
MS.gene80207.t1 MTR_5g085125 40.449 89 51 1 7 93 15 103 1.52e-12 63.2
MS.gene80207.t1 MTR_1g070045 54.386 57 25 1 8 63 66 122 1.85e-12 62.8
MS.gene80207.t1 MTR_8g023680 57.447 47 19 1 7 53 115 160 1.88e-12 65.1
MS.gene80207.t1 MTR_1g110970 57.447 47 19 1 7 53 96 141 3.24e-12 64.3
MS.gene80207.t1 MTR_3g098580 64.912 57 20 0 8 64 76 132 3.93e-12 63.5
MS.gene80207.t1 MTR_1g069960 58.333 72 29 1 5 75 24 95 4.56e-12 61.2
MS.gene80207.t1 MTR_5g008790 49.206 63 26 2 6 64 16 76 6.15e-12 61.2
MS.gene80207.t1 MTR_7g096810 51.852 81 29 2 5 75 10 90 7.52e-12 60.5
MS.gene80207.t1 MTR_4g102670 54.386 57 25 1 8 64 15 70 9.33e-12 60.8
MS.gene80207.t1 MTR_6g466020 53.571 56 26 0 8 63 43 98 9.60e-12 61.2
MS.gene80207.t1 MTR_5g008470 54.545 55 25 0 10 64 77 131 1.00e-11 61.2
MS.gene80207.t1 MTR_3g072610 55.072 69 30 1 5 73 22 89 1.53e-11 61.2
MS.gene80207.t1 MTR_8g023700 58.537 41 17 0 8 48 117 157 1.57e-11 62.4
MS.gene80207.t1 MTR_5g057810 55.556 45 20 0 3 47 83 127 2.52e-11 61.6
MS.gene80207.t1 MTR_5g057647 55.556 45 20 0 3 47 83 127 2.52e-11 61.6
MS.gene80207.t1 MTR_5g058470 60.656 61 23 1 5 64 93 153 3.47e-11 61.2
MS.gene80207.t1 MTR_4g009260 64.407 59 21 0 5 63 74 132 3.90e-11 60.1
MS.gene80207.t1 MTR_2g085015 54.237 59 25 2 8 64 47 105 7.84e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80207.t1 AT5G25190 66.321 193 48 3 1 189 1 180 5.72e-83 243
MS.gene80207.t1 AT1G15360 72.464 69 19 0 6 74 5 73 1.77e-32 115
MS.gene80207.t1 AT1G15360 72.464 69 19 0 6 74 5 73 1.77e-32 115
MS.gene80207.t1 AT5G25390 40.722 194 72 9 6 176 5 178 1.62e-29 108
MS.gene80207.t1 AT5G25390 39.691 194 71 10 6 176 5 175 3.35e-26 99.4
MS.gene80207.t1 AT1G22190 52.941 85 37 1 2 86 77 158 8.67e-24 94.7
MS.gene80207.t1 AT5G65130 53.571 84 37 1 3 86 106 187 2.02e-23 94.4
MS.gene80207.t1 AT5G65130 53.571 84 37 1 3 86 108 189 2.18e-23 94.4
MS.gene80207.t1 AT1G78080 41.259 143 77 3 2 143 146 282 2.92e-23 94.7
MS.gene80207.t1 AT1G36060 51.648 91 39 2 1 86 136 226 1.33e-22 92.8
MS.gene80207.t1 AT3G15210 67.241 58 19 0 7 64 24 81 1.52e-22 90.9
MS.gene80207.t1 AT4G13620 52.747 91 31 2 4 94 228 306 2.23e-22 93.2
MS.gene80207.t1 AT4G39780 66.667 60 20 0 5 64 90 149 5.93e-22 90.1
MS.gene80207.t1 AT5G11190 58.242 91 24 1 6 82 5 95 7.52e-22 88.2
MS.gene80207.t1 AT2G22200 61.905 63 24 0 2 64 65 127 7.57e-22 89.7
MS.gene80207.t1 AT3G20310 48.352 91 43 1 5 95 24 110 7.58e-22 89.4
MS.gene80207.t1 AT5G44210 61.290 62 24 0 3 64 28 89 3.42e-21 86.7
MS.gene80207.t1 AT5G13910 57.534 73 31 0 7 79 19 91 7.84e-21 85.9
MS.gene80207.t1 AT3G11020 68.421 57 18 0 8 64 78 134 1.03e-20 87.8
MS.gene80207.t1 AT5G13330 62.903 62 22 1 4 64 34 95 1.62e-20 85.1
MS.gene80207.t1 AT1G21910 45.794 107 44 2 8 114 50 142 2.07e-20 85.5
MS.gene80207.t1 AT1G28370 60.317 63 24 1 7 68 19 81 2.65e-20 83.6
MS.gene80207.t1 AT1G28370 60.317 63 24 1 7 68 57 119 2.70e-20 84.3
MS.gene80207.t1 AT5G05410 51.220 82 39 1 8 89 79 159 2.93e-20 86.3
MS.gene80207.t1 AT2G20880 66.667 57 19 0 8 64 187 243 3.25e-20 86.7
MS.gene80207.t1 AT5G61890 64.912 57 20 0 8 64 90 146 3.29e-20 85.1
MS.gene80207.t1 AT1G28360 63.158 57 21 0 8 64 12 68 3.71e-20 83.6
MS.gene80207.t1 AT5G05410 51.220 82 39 1 8 89 79 159 4.23e-20 86.3
MS.gene80207.t1 AT1G50640 60.000 60 24 0 7 66 27 86 4.31e-20 84.3
MS.gene80207.t1 AT1G03800 60.345 58 23 0 7 64 52 109 6.35e-20 84.3
MS.gene80207.t1 AT1G72360 58.621 58 24 0 7 64 24 81 6.37e-20 83.6
MS.gene80207.t1 AT2G40340 38.235 136 81 1 8 143 14 146 6.89e-20 85.1
MS.gene80207.t1 AT2G40340 38.235 136 81 1 8 143 14 146 6.89e-20 85.1
MS.gene80207.t1 AT2G40340 38.235 136 81 1 8 143 14 146 6.89e-20 85.1
MS.gene80207.t1 AT1G24590 66.102 59 20 0 7 65 57 115 8.39e-20 85.1
MS.gene80207.t1 AT2G47520 53.623 69 31 1 8 76 50 117 8.50e-20 82.4
MS.gene80207.t1 AT1G19210 55.385 65 29 0 5 69 9 73 9.90e-20 82.4
MS.gene80207.t1 AT1G12980 48.889 90 46 0 7 96 56 145 1.30e-19 84.7
MS.gene80207.t1 AT2G40340 38.235 136 81 1 8 143 72 204 1.49e-19 84.7
MS.gene80207.t1 AT2G40340 38.235 136 81 1 8 143 79 211 1.56e-19 84.7
MS.gene80207.t1 AT1G72360 58.621 58 24 0 7 64 75 132 1.92e-19 83.6
MS.gene80207.t1 AT2G33710 60.000 60 24 0 5 64 67 126 1.96e-19 82.4
MS.gene80207.t1 AT1G72360 58.621 58 24 0 7 64 73 130 2.00e-19 83.2
MS.gene80207.t1 AT1G71450 53.488 86 36 1 8 89 24 109 2.38e-19 81.6
MS.gene80207.t1 AT2G33710 60.000 60 24 0 5 64 67 126 2.62e-19 82.4
MS.gene80207.t1 AT2G40340 49.367 79 37 1 8 86 72 147 3.25e-19 83.2
MS.gene80207.t1 AT4G32800 65.000 60 21 0 5 64 16 75 3.60e-19 82.0
MS.gene80207.t1 AT4G06746 55.000 60 27 0 5 64 33 92 4.73e-19 79.7
MS.gene80207.t1 AT1G74930 55.556 63 28 0 5 67 18 80 4.87e-19 80.9
MS.gene80207.t1 AT1G12890 56.061 66 29 0 5 70 18 83 5.45e-19 81.3
MS.gene80207.t1 AT3G16280 66.667 57 19 0 8 64 61 117 6.99e-19 81.3
MS.gene80207.t1 AT3G16280 66.667 57 19 0 8 64 79 135 9.36e-19 81.3
MS.gene80207.t1 AT2G35700 64.912 57 20 0 8 64 45 101 9.36e-19 80.1
MS.gene80207.t1 AT4G27950 58.730 63 26 0 5 67 115 177 1.02e-18 82.4
MS.gene80207.t1 AT5G19790 60.294 68 26 1 7 73 21 88 1.53e-18 80.9
MS.gene80207.t1 AT4G16750 61.667 60 23 0 5 64 37 96 1.59e-18 79.3
MS.gene80207.t1 AT2G44940 66.667 57 19 0 8 64 100 156 1.78e-18 81.3
MS.gene80207.t1 AT4G11140 34.711 121 76 1 6 123 85 205 2.00e-18 80.9
MS.gene80207.t1 AT5G18560 60.656 61 24 0 7 67 54 114 2.06e-18 81.6
MS.gene80207.t1 AT5G21960 57.377 61 26 0 7 67 6 66 2.23e-18 79.7
MS.gene80207.t1 AT5G47220 53.333 75 34 1 6 79 115 189 2.31e-18 80.1
MS.gene80207.t1 AT5G11590 66.667 57 19 0 8 64 51 107 2.59e-18 79.7
MS.gene80207.t1 AT1G28160 53.425 73 34 0 7 79 38 110 2.91e-18 80.1
MS.gene80207.t1 AT4G17500 58.209 67 27 1 6 71 146 212 3.26e-18 80.1
MS.gene80207.t1 AT3G16770 57.895 57 24 0 8 64 79 135 3.56e-18 79.7
MS.gene80207.t1 AT3G57600 44.681 94 46 2 7 94 27 120 4.20e-18 80.1
MS.gene80207.t1 AT4G28140 61.404 57 22 0 8 64 143 199 4.61e-18 80.1
MS.gene80207.t1 AT4G23750 50.000 66 33 0 5 70 119 184 9.82e-18 79.7
MS.gene80207.t1 AT4G23750 50.000 66 33 0 5 70 119 184 9.82e-18 79.7
MS.gene80207.t1 AT2G25820 64.912 57 20 0 8 64 26 82 1.27e-17 77.8
MS.gene80207.t1 AT3G61630 62.069 58 22 0 6 63 103 160 1.27e-17 79.3
MS.gene80207.t1 AT5G25810 63.158 57 21 0 8 64 36 92 1.39e-17 77.4
MS.gene80207.t1 AT5G53290 60.345 58 23 0 6 63 123 180 2.16e-17 79.0
MS.gene80207.t1 AT3G60490 63.158 57 21 0 8 64 71 127 3.18e-17 77.4
MS.gene80207.t1 AT1G75490 57.895 57 24 0 8 64 42 98 4.25e-17 75.9
MS.gene80207.t1 AT4G36900 56.140 57 25 0 8 64 30 86 5.14e-17 75.5
MS.gene80207.t1 AT1G01250 59.649 57 23 0 8 64 45 101 5.92e-17 75.5
MS.gene80207.t1 AT5G18450 39.048 105 64 0 8 112 34 138 6.16e-17 77.4
MS.gene80207.t1 AT5G47230 57.377 61 25 1 5 64 153 213 6.97e-17 77.0
MS.gene80207.t1 AT2G23340 56.140 57 25 0 8 64 28 84 9.24e-17 74.3
MS.gene80207.t1 AT3G23230 54.167 72 30 2 5 73 17 88 9.67e-17 73.6
MS.gene80207.t1 AT1G22985 52.000 75 32 2 5 76 72 145 1.36e-16 73.6
MS.gene80207.t1 AT2G46310 59.649 57 23 0 7 63 98 154 1.49e-16 75.9
MS.gene80207.t1 AT5G67190 44.872 78 43 0 8 85 21 98 1.49e-16 73.9
MS.gene80207.t1 AT4G25490 66.071 56 19 0 8 63 48 103 1.56e-16 74.7
MS.gene80207.t1 AT5G51190 44.706 85 46 1 5 88 69 153 1.73e-16 74.7
MS.gene80207.t1 AT2G40350 53.333 60 28 0 8 67 74 133 2.03e-16 73.2
MS.gene80207.t1 AT1G46768 54.386 57 26 0 8 64 31 87 2.04e-16 72.8
MS.gene80207.t1 AT1G46768 54.386 57 26 0 8 64 31 87 2.17e-16 72.8
MS.gene80207.t1 AT1G46768 54.386 57 26 0 8 64 31 87 2.17e-16 72.8
MS.gene80207.t1 AT2G40350 53.333 60 28 0 8 67 67 126 2.37e-16 72.8
MS.gene80207.t1 AT4G31060 39.831 118 63 3 8 117 27 144 2.50e-16 73.6
MS.gene80207.t1 AT2G44840 53.030 66 27 2 4 65 85 150 4.81e-16 73.6
MS.gene80207.t1 AT1G68550 34.615 130 74 3 2 127 107 229 5.29e-16 74.7
MS.gene80207.t1 AT1G68550 34.615 130 74 3 2 127 107 229 5.29e-16 74.7
MS.gene80207.t1 AT5G43410 52.239 67 31 1 7 72 14 80 5.55e-16 71.2
MS.gene80207.t1 AT4G25470 64.286 56 20 0 8 63 51 106 7.30e-16 72.8
MS.gene80207.t1 AT4G17490 55.738 61 26 1 5 64 134 194 7.45e-16 73.9
MS.gene80207.t1 AT5G07580 58.333 60 24 1 8 66 110 169 1.13e-15 72.4
MS.gene80207.t1 AT3G50260 50.877 57 28 0 8 64 21 77 1.60e-15 70.5
MS.gene80207.t1 AT4G25480 62.500 56 21 0 8 63 51 106 2.21e-15 71.6
MS.gene80207.t1 AT5G61600 50.725 69 33 1 8 75 88 156 3.36e-15 71.6
MS.gene80207.t1 AT1G71130 52.239 67 27 1 2 63 73 139 4.60e-15 69.7
MS.gene80207.t1 AT5G64750 59.259 54 22 0 13 66 190 243 1.17e-14 71.6
MS.gene80207.t1 AT1G22810 31.655 139 67 4 5 139 11 125 1.19e-14 68.2
MS.gene80207.t1 AT5G51990 60.714 56 22 0 8 63 54 109 2.07e-14 69.3
MS.gene80207.t1 AT2G36450 60.345 58 22 1 8 64 15 72 3.13e-14 67.8
MS.gene80207.t1 AT5G07310 43.333 90 51 0 8 97 92 181 7.35e-14 68.2
MS.gene80207.t1 AT2G38340 55.072 69 23 1 4 64 66 134 7.49e-14 68.2
MS.gene80207.t1 AT3G23240 51.613 62 29 1 3 63 77 138 7.74e-14 67.4
MS.gene80207.t1 AT1G53170 51.250 80 39 0 7 86 30 109 8.10e-14 67.0
MS.gene80207.t1 AT1G43160 62.121 66 24 1 1 66 55 119 9.63e-14 66.6
MS.gene80207.t1 AT1G71520 47.761 67 27 2 5 65 11 75 1.61e-13 65.1
MS.gene80207.t1 AT3G14230 43.966 116 59 2 5 119 120 230 2.13e-13 67.8
MS.gene80207.t1 AT3G14230 43.966 116 59 2 5 119 121 231 2.35e-13 67.8
MS.gene80207.t1 AT3G14230 43.966 116 59 2 5 119 125 235 2.75e-13 67.4
MS.gene80207.t1 AT2G31230 50.820 61 29 1 5 64 83 143 3.09e-13 66.2
MS.gene80207.t1 AT1G77200 61.905 63 24 0 2 64 37 99 3.15e-13 66.2
MS.gene80207.t1 AT3G25890 71.053 38 11 0 10 47 133 170 3.26e-13 67.0
MS.gene80207.t1 AT3G25890 71.053 38 11 0 10 47 133 170 3.26e-13 67.0
MS.gene80207.t1 AT4G34410 62.687 67 25 0 8 74 136 202 3.84e-13 66.2
MS.gene80207.t1 AT4G18450 55.000 60 25 2 6 63 108 167 5.10e-13 66.2
MS.gene80207.t1 AT2G40220 68.421 57 18 0 7 63 54 110 1.10e-12 65.5
MS.gene80207.t1 AT1G33760 43.363 113 51 2 5 113 17 120 1.18e-12 63.5
MS.gene80207.t1 AT1G77640 61.017 59 23 0 6 64 41 99 1.61e-12 64.3
MS.gene80207.t1 AT5G50080 63.333 60 22 0 5 64 74 133 2.09e-12 63.5
MS.gene80207.t1 AT5G50080 63.333 60 22 0 5 64 83 142 2.27e-12 63.5
MS.gene80207.t1 AT1G53910 61.667 60 23 0 5 64 122 181 3.41e-12 64.3
MS.gene80207.t1 AT1G53910 61.667 60 23 0 5 64 122 181 3.41e-12 64.3
MS.gene80207.t1 AT1G53910 61.667 60 23 0 5 64 120 179 3.53e-12 64.3
MS.gene80207.t1 AT1G63030 51.786 56 27 0 8 63 30 85 6.51e-12 61.6
MS.gene80207.t1 AT1G63030 51.786 56 27 0 8 63 30 85 6.51e-12 61.6
MS.gene80207.t1 AT1G64380 50.602 83 37 1 1 79 129 211 3.22e-11 61.2
MS.gene80207.t1 AT1G12610 50.000 56 28 0 8 63 30 85 4.59e-11 59.7
MS.gene80207.t1 AT1G44830 61.667 60 22 1 6 64 33 92 6.18e-11 59.7

Find 36 sgRNAs with CRISPR-Local

Find 50 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGAGGAATTGCTTCATTA+TGG 0.265059 3.4:-92744237 MS.gene80207:CDS
TCATAGTAGTATCAATTTCT+TGG 0.285328 3.4:+92744370 None:intergenic
CAATATGGGGTGGCGAATTT+CGG 0.312981 3.4:+92744913 None:intergenic
TGAGGCTGTTGCAGAGATAT+TGG 0.340722 3.4:+92744450 None:intergenic
GACAAAGGCATTGGGGCTCT+TGG 0.365987 3.4:-92744940 MS.gene80207:CDS
TAGAGGAATTGCTTCATTAT+GGG 0.393664 3.4:-92744236 MS.gene80207:CDS
AAAAGAATCAGAGGGAAATT+GGG 0.395389 3.4:-92744334 MS.gene80207:CDS
AGGCGTCCGACAAAGGCATT+GGG 0.410359 3.4:-92744948 MS.gene80207:CDS
ACAAAGGCATTGGGGCTCTT+GGG 0.427788 3.4:-92744939 MS.gene80207:CDS
TGTGACACATTGGGGTTGTA+AGG 0.432124 3.4:+92744555 None:intergenic
GAGGCGTCCGACAAAGGCAT+TGG 0.472374 3.4:-92744949 MS.gene80207:CDS
AAGAGCCCCAATGCCTTTGT+CGG 0.476653 3.4:+92744942 None:intergenic
CAAGACTAATGTGTGGTACA+AGG 0.476857 3.4:-92744593 MS.gene80207:CDS
TTTCATGGGAACATTGTTTG+TGG 0.482813 3.4:+92744398 None:intergenic
GATGATGATTGTGACACATT+GGG 0.489977 3.4:+92744546 None:intergenic
TCACATTGAACAAATGATAG+AGG 0.493691 3.4:-92744253 MS.gene80207:CDS
AATGCCTTTGTCGGACGCCT+CGG 0.517800 3.4:+92744951 None:intergenic
GGTGTCTAGACTTACAATAT+GGG 0.524604 3.4:+92744899 None:intergenic
CTTTGTGAAGATTGTTTCTG+AGG 0.530721 3.4:+92744432 None:intergenic
TCAATGTGATCTTCTTCAAG+AGG 0.543478 3.4:+92744267 None:intergenic
GTGACACATTGGGGTTGTAA+GGG 0.555765 3.4:+92744556 None:intergenic
TTTCACTTTCATGTCTGTGG+TGG 0.566776 3.4:+92744189 None:intergenic
ATGTTTCACTTTCATGTCTG+TGG 0.584343 3.4:+92744186 None:intergenic
AGATGATGATTGTGACACAT+TGG 0.587146 3.4:+92744545 None:intergenic
GTTACCGAGGCGTCCGACAA+AGG 0.593207 3.4:-92744955 MS.gene80207:CDS
TACTACTATGAAACATGAAG+AGG 0.601855 3.4:-92744358 MS.gene80207:CDS
ACGCCTCGGTAACGTTGTTG+TGG 0.609578 3.4:+92744965 None:intergenic
TAAACTGCATAGATGCTACA+TGG 0.617860 3.4:-92744493 MS.gene80207:CDS
AAGACTAATGTGTGGTACAA+GGG 0.623635 3.4:-92744592 MS.gene80207:CDS
ATGATGATTGTGACACATTG+GGG 0.665424 3.4:+92744547 None:intergenic
TGGCTTCATTGCAAATCACA+AGG 0.668334 3.4:-92744473 MS.gene80207:CDS
GTGTCTAGACTTACAATATG+GGG 0.673317 3.4:+92744900 None:intergenic
TCTAGACTTACAATATGGGG+TGG 0.685523 3.4:+92744903 None:intergenic
GGCGTCCGACAAAGGCATTG+GGG 0.701891 3.4:-92744947 MS.gene80207:CDS
AGACCACAACAACGTTACCG+AGG 0.703547 3.4:-92744968 MS.gene80207:CDS
GAAGCAGCAAGACTAATGTG+TGG 0.733704 3.4:-92744600 MS.gene80207:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TCATAGTAGTATCAATTTCT+TGG + chr3.4:92744804-92744823 None:intergenic 25.0%
!! GGTTTTCAAAAAAGTTAAAG+TGG - chr3.4:92744858-92744877 MS.gene80207:intron 25.0%
!!! AAGTTTTAACAAAATCACGA+TGG + chr3.4:92744296-92744315 None:intergenic 25.0%
AAAAAGAATCAGAGGGAAAT+TGG - chr3.4:92744836-92744855 MS.gene80207:intron 30.0%
AAAAGAATCAGAGGGAAATT+GGG - chr3.4:92744837-92744856 MS.gene80207:intron 30.0%
ATAGAGGAATTGCTTCATTA+TGG - chr3.4:92744934-92744953 MS.gene80207:CDS 30.0%
TACTACTATGAAACATGAAG+AGG - chr3.4:92744813-92744832 MS.gene80207:intron 30.0%
TAGAGGAATTGCTTCATTAT+GGG - chr3.4:92744935-92744954 MS.gene80207:CDS 30.0%
TCACATTGAACAAATGATAG+AGG - chr3.4:92744918-92744937 MS.gene80207:CDS 30.0%
TCATTATGTGCAGAAAAACT+AGG - chr3.4:92744497-92744516 MS.gene80207:CDS 30.0%
! ACAGTTACTACTATCTTTTG+AGG + chr3.4:92744370-92744389 None:intergenic 30.0%
!!! AATTTCTTGGCTACTTTTCA+TGG + chr3.4:92744791-92744810 None:intergenic 30.0%
!!! ATTTCTTGGCTACTTTTCAT+GGG + chr3.4:92744790-92744809 None:intergenic 30.0%
AAGACTAATGTGTGGTACAA+GGG - chr3.4:92744579-92744598 MS.gene80207:CDS 35.0%
AGAAAAACTAGGATATGGCT+TGG - chr3.4:92744508-92744527 MS.gene80207:CDS 35.0%
AGATGATGATTGTGACACAT+TGG + chr3.4:92744629-92744648 None:intergenic 35.0%
ATGATGATTGTGACACATTG+GGG + chr3.4:92744627-92744646 None:intergenic 35.0%
GAAGAGGAAAAAGAATCAGA+GGG - chr3.4:92744829-92744848 MS.gene80207:intron 35.0%
GATGATGATTGTGACACATT+GGG + chr3.4:92744628-92744647 None:intergenic 35.0%
GGTGTCTAGACTTACAATAT+GGG + chr3.4:92744275-92744294 None:intergenic 35.0%
GTGTCTAGACTTACAATATG+GGG + chr3.4:92744274-92744293 None:intergenic 35.0%
TAAACTGCATAGATGCTACA+TGG - chr3.4:92744678-92744697 MS.gene80207:intron 35.0%
TCAATGTGATCTTCTTCAAG+AGG + chr3.4:92744907-92744926 None:intergenic 35.0%
TGAAGAGGAAAAAGAATCAG+AGG - chr3.4:92744828-92744847 MS.gene80207:intron 35.0%
TGGTGTCTAGACTTACAATA+TGG + chr3.4:92744276-92744295 None:intergenic 35.0%
TGTGCAGAAAAACTAGGATA+TGG - chr3.4:92744503-92744522 MS.gene80207:CDS 35.0%
TTTCATGGGAACATTGTTTG+TGG + chr3.4:92744776-92744795 None:intergenic 35.0%
!! CTTTGTGAAGATTGTTTCTG+AGG + chr3.4:92744742-92744761 None:intergenic 35.0%
CAAGACTAATGTGTGGTACA+AGG - chr3.4:92744578-92744597 MS.gene80207:CDS 40.0%
TCTAGACTTACAATATGGGG+TGG + chr3.4:92744271-92744290 None:intergenic 40.0%
TGGCTTCATTGCAAATCACA+AGG - chr3.4:92744698-92744717 MS.gene80207:intron 40.0%
!!! ATCTTTTGAGGCTGAGAGTT+TGG + chr3.4:92744358-92744377 None:intergenic 40.0%
!!! TGGTACTTTTGAAACTGCAG+AGG - chr3.4:92744528-92744547 MS.gene80207:CDS 40.0%
CAATATGGGGTGGCGAATTT+CGG + chr3.4:92744261-92744280 None:intergenic 45.0%
GAAGCAGCAAGACTAATGTG+TGG - chr3.4:92744571-92744590 MS.gene80207:CDS 45.0%
GTGACACATTGGGGTTGTAA+GGG + chr3.4:92744618-92744637 None:intergenic 45.0%
TGAGGCTGTTGCAGAGATAT+TGG + chr3.4:92744724-92744743 None:intergenic 45.0%
TGTGACACATTGGGGTTGTA+AGG + chr3.4:92744619-92744638 None:intergenic 45.0%
AAGAGCCCCAATGCCTTTGT+CGG + chr3.4:92744232-92744251 None:intergenic 50.0%
AGACCACAACAACGTTACCG+AGG - chr3.4:92744203-92744222 MS.gene80207:CDS 50.0%
CTGAGAGTTTGGCAGGATCA+CGG + chr3.4:92744347-92744366 None:intergenic 50.0%
! TTTGAGGCTGAGAGTTTGGC+AGG + chr3.4:92744354-92744373 None:intergenic 50.0%
!! ACAAAGGCATTGGGGCTCTT+GGG - chr3.4:92744232-92744251 MS.gene80207:CDS 50.0%
AATGCCTTTGTCGGACGCCT+CGG + chr3.4:92744223-92744242 None:intergenic 55.0%
ACGCCTCGGTAACGTTGTTG+TGG + chr3.4:92744209-92744228 None:intergenic 55.0%
!! AGGCGTCCGACAAAGGCATT+GGG - chr3.4:92744223-92744242 MS.gene80207:CDS 55.0%
!! GACAAAGGCATTGGGGCTCT+TGG - chr3.4:92744231-92744250 MS.gene80207:CDS 55.0%
! GAGGCGTCCGACAAAGGCAT+TGG - chr3.4:92744222-92744241 MS.gene80207:CDS 60.0%
! GTTACCGAGGCGTCCGACAA+AGG - chr3.4:92744216-92744235 MS.gene80207:CDS 60.0%
!! GGCGTCCGACAAAGGCATTG+GGG - chr3.4:92744224-92744243 MS.gene80207:CDS 60.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 92744197 92744996 92744197 ID=MS.gene80207
chr3.4 mRNA 92744197 92744996 92744197 ID=MS.gene80207.t1;Parent=MS.gene80207
chr3.4 exon 92744914 92744996 92744914 ID=MS.gene80207.t1.exon1;Parent=MS.gene80207.t1
chr3.4 CDS 92744914 92744996 92744914 ID=cds.MS.gene80207.t1;Parent=MS.gene80207.t1
chr3.4 exon 92744197 92744683 92744197 ID=MS.gene80207.t1.exon2;Parent=MS.gene80207.t1
chr3.4 CDS 92744197 92744683 92744197 ID=cds.MS.gene80207.t1;Parent=MS.gene80207.t1
Gene Sequence

>MS.gene80207

ATGGCTAGACCACAACAACGTTACCGAGGCGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCCATATTGTAAGTCTAGACACCATCGTGATTTTGTTAAAACTTAACGCATGTAAAAAAAATCATTAGTACACCGTGATCCTGCCAAACTCTCAGCCTCAAAAGATAGTAGTAACTGTTTTGAGTTTTGACACATTACATATATGCACATTTCACATTTCTTTAGAAGCATATTCATTTCAAGTCATTAATTAATTATGAATGAAAAGTTATAACATTTTTTTTTTCATTATGTGCAGAAAAACTAGGATATGGCTTGGTACTTTTGAAACTGCAGAGGATGCAGCTAGAGCATACGATGAAGCAGCAAGACTAATGTGTGGTACAAGGGCAAGAACAAATTTCCCTTACAACCCCAATGTGTCACAATCATCATCTTCTAAGCTTCTCTCAGCAACTTTAACTGCTAAACTGCATAGATGCTACATGGCTTCATTGCAAATCACAAGGCCAATATCTCTGCAACAGCCTCAGAAACAATCTTCACAAAGTGTAAACATATCCACAAACAATGTTCCCATGAAAAGTAGCCAAGAAATTGATACTACTATGAAACATGAAGAGGAAAAAGAATCAGAGGGAAATTGGGTTTTCAAAAAAGTTAAAGTGGAAAATTCTCAGCAATTTATTAAGCCTCTTGAAGAAGATCACATTGAACAAATGATAGAGGAATTGCTTCATTATGGGTCTATTGAGCTTTGTTCTGTTTTTCCACCACAGACATGA
Protein sequence

>MS.gene80207.t1

MARPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGTRARTNFPYNPNVSQSSSSKLLSATLTAKLHRCYMASLQITRPISLQQPQKQSSQSVNISTNNVPMKSSQEIDTTMKHEEEKESEGNWVFKKVKVENSQQFIKPLEEDHIEQMIEELLHYGSIELCSVFPPQT