Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80532.t1 | XP_003619136.1 | 98 | 149 | 3 | 0 | 1 | 149 | 1 | 149 | 1.50E-77 | 299.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80532.t1 | Q8RWG8 | 74.8 | 143 | 36 | 0 | 6 | 148 | 11 | 153 | 4.9e-61 | 235.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80532.t1 | G7KIE5 | 98.0 | 149 | 3 | 0 | 1 | 149 | 1 | 149 | 1.1e-77 | 299.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060763 | MS.gene80532 | 0.800396 | 1.47E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80532.t1 | MTR_6g042530 | 93.750 | 224 | 10 | 1 | 1 | 224 | 1 | 220 | 4.45e-136 | 381 |
| MS.gene80532.t1 | MTR_1g097600 | 74.661 | 221 | 50 | 3 | 6 | 224 | 5 | 221 | 9.87e-112 | 319 |
| MS.gene80532.t1 | MTR_1g097600 | 80.272 | 147 | 28 | 1 | 6 | 151 | 5 | 151 | 1.54e-86 | 253 |
| MS.gene80532.t1 | MTR_3g034085 | 80.769 | 130 | 24 | 1 | 6 | 134 | 5 | 134 | 5.11e-76 | 226 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80532.t1 | AT2G30060 | 67.980 | 203 | 62 | 3 | 6 | 206 | 11 | 212 | 6.48e-92 | 269 |
| MS.gene80532.t1 | AT5G58590 | 72.674 | 172 | 46 | 1 | 8 | 178 | 10 | 181 | 3.44e-90 | 265 |
| MS.gene80532.t1 | AT1G07140 | 72.254 | 173 | 47 | 1 | 6 | 177 | 9 | 181 | 2.84e-88 | 260 |
Find 42 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGCTTTCCTCTTTATTC+AGG | 0.146603 | 6.3:+36533724 | None:intergenic |
| CTTCAACGCTCAAATTCTTA+AGG | 0.306134 | 6.3:+36533679 | None:intergenic |
| CTTGCTTTCCTCTTTATTCA+GGG | 0.373773 | 6.3:+36533725 | None:intergenic |
| GTTAGATTGCAGAAGGTTCA+TGG | 0.375075 | 6.3:-36533772 | MS.gene80532:intron |
| CTTAAGAATTTGAGCGTTGA+AGG | 0.385239 | 6.3:-36533678 | MS.gene80532:CDS |
| GATTCCCTTCCTTGTCAAAT+CGG | 0.395157 | 6.3:+36535441 | None:intergenic |
| ATAAGGTTACTGGAAAAGTT+AGG | 0.398775 | 6.3:-36535376 | MS.gene80532:CDS |
| GGAATGAGAAATCTTGTGTT+TGG | 0.452376 | 6.3:-36534885 | MS.gene80532:CDS |
| TGCTGAATCCCTGAATAAAG+AGG | 0.481374 | 6.3:-36533733 | MS.gene80532:CDS |
| CACGAAGTCGCTGTTTCCAC+TGG | 0.483068 | 6.3:-36536028 | MS.gene80532:CDS |
| CAATGGAAGGAACGAGGAGC+AGG | 0.488564 | 6.3:-36535419 | MS.gene80532:CDS |
| TCAATACTCACTGAGATGAT+TGG | 0.489367 | 6.3:+36535316 | None:intergenic |
| TTGACAAGGAAGGGAATCAA+TGG | 0.490090 | 6.3:-36535436 | MS.gene80532:CDS |
| ATCTTCCTCTTCGTGATGAT+CGG | 0.492706 | 6.3:+36536108 | None:intergenic |
| GCCGGTGTCTTCTTCATCGC+CGG | 0.504644 | 6.3:+36536078 | None:intergenic |
| GAAAACCGAGGAGAAAACTA+AGG | 0.512105 | 6.3:-36533613 | MS.gene80532:CDS |
| AAACAGCGACTTCGTGAAGT+TGG | 0.518653 | 6.3:+36536035 | None:intergenic |
| ATGACTGTGCAAGAGCATGC+TGG | 0.525554 | 6.3:-36534907 | MS.gene80532:CDS |
| GTGTCTTCTTCATCGCCGGC+GGG | 0.532371 | 6.3:+36536082 | None:intergenic |
| GAAAAGAAAGTCGAAGAGCC+TGG | 0.535131 | 6.3:-36533552 | MS.gene80532:CDS |
| TTCTTCATCTTCTTCACCAG+TGG | 0.541787 | 6.3:+36536012 | None:intergenic |
| TCGTACTGTTAGATTGCAGA+AGG | 0.550462 | 6.3:-36533779 | MS.gene80532:intron |
| TTAAGAATTTGAGCGTTGAA+GGG | 0.557314 | 6.3:-36533677 | MS.gene80532:CDS |
| ATCTTGTGTTTGGCACGCGA+AGG | 0.558670 | 6.3:-36534875 | MS.gene80532:CDS |
| CTGTACCGATTTGACAAGGA+AGG | 0.562348 | 6.3:-36535446 | MS.gene80532:CDS |
| GGTGTCTTCTTCATCGCCGG+CGG | 0.563701 | 6.3:+36536081 | None:intergenic |
| TGACTGTGCAAGAGCATGCT+GGG | 0.564943 | 6.3:-36534906 | MS.gene80532:CDS |
| CATAATCAAGCAGATGAACC+AGG | 0.570119 | 6.3:+36533534 | None:intergenic |
| GATCGGAGCGATTTGAGCGC+CGG | 0.581625 | 6.3:+36536060 | None:intergenic |
| CCTGAATAAAGAGGAAAGCA+AGG | 0.588948 | 6.3:-36533724 | MS.gene80532:CDS |
| CTTAAGGAGATCAGCAGCAG+TGG | 0.591678 | 6.3:+36533695 | None:intergenic |
| ACTTCGTGAAGTTGGATGAT+CGG | 0.594925 | 6.3:+36536043 | None:intergenic |
| CACGCGAAGGACTTTGCTGA+TGG | 0.615394 | 6.3:-36534862 | MS.gene80532:CDS |
| GAAAGACGAAGAGAAATCTG+AGG | 0.628935 | 6.3:-36533637 | MS.gene80532:CDS |
| CAAGGAAGGGAATCAATGGA+AGG | 0.636394 | 6.3:-36535432 | MS.gene80532:CDS |
| TGTACCGATTTGACAAGGAA+GGG | 0.657438 | 6.3:-36535445 | MS.gene80532:CDS |
| GAAGAGGAAGATGTTCCCGC+CGG | 0.668991 | 6.3:-36536097 | MS.gene80532:CDS |
| AAGCACCGATCATCACGAAG+AGG | 0.672214 | 6.3:-36536113 | MS.gene80532:CDS |
| GGGAATCAATGGAAGGAACG+AGG | 0.681745 | 6.3:-36535425 | MS.gene80532:CDS |
| GAAACTGTACCGATTTGACA+AGG | 0.698764 | 6.3:-36535450 | MS.gene80532:CDS |
| GAAATCTGAGGAGAAAACCG+AGG | 0.701527 | 6.3:-36533625 | MS.gene80532:CDS |
| GCCGGCGATGAAGAAGACAC+CGG | 0.712296 | 6.3:-36536079 | MS.gene80532:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTCTTATTTGATTTTTAAT+TGG | - | chr6.3:36534675-36534694 | MS.gene80532:intron | 10.0% |
| !! | AAAAATTACAACAAAAAAAG+TGG | + | chr6.3:36533705-36533724 | None:intergenic | 15.0% |
| !! | AATGAATTAAATCATTATAC+GGG | + | chr6.3:36535749-36535768 | None:intergenic | 15.0% |
| !! | ATAAGTTGTTTATTCAAATA+AGG | - | chr6.3:36535170-36535189 | MS.gene80532:intron | 15.0% |
| !! | ATAGGTTATACATAAATATT+TGG | - | chr6.3:36535077-36535096 | MS.gene80532:intron | 15.0% |
| !! | CAATGAATTAAATCATTATA+CGG | + | chr6.3:36535750-36535769 | None:intergenic | 15.0% |
| !! | CATAAAAAAATCACAAAAAA+CGG | + | chr6.3:36533957-36533976 | None:intergenic | 15.0% |
| !! | TGAATAAAAGAAAAAGAAAA+AGG | + | chr6.3:36534888-36534907 | None:intergenic | 15.0% |
| !! | TTATTTGAATAAACAACTTA+TGG | + | chr6.3:36535171-36535190 | None:intergenic | 15.0% |
| !! | CTGATTAATCTAAGTTAAAT+TGG | - | chr6.3:36535236-36535255 | MS.gene80532:intron | 20.0% |
| !! | TTGATTGTAAAATAACTTGA+TGG | - | chr6.3:36535312-36535331 | MS.gene80532:intron | 20.0% |
| !!! | ATCTTTAATTAGAAGTGTTA+TGG | - | chr6.3:36534645-36534664 | MS.gene80532:intron | 20.0% |
| !!! | ATTTTACAATCAAACTTAAG+AGG | + | chr6.3:36535305-36535324 | None:intergenic | 20.0% |
| !!! | GATTTTTAATTGGTTTTTGA+TGG | - | chr6.3:36534685-36534704 | MS.gene80532:intron | 20.0% |
| !!! | TTGCAATTTTTTTGTGATTT+TGG | - | chr6.3:36534054-36534073 | MS.gene80532:intron | 20.0% |
| ! | ATATGCCATAAATTTACACT+CGG | + | chr6.3:36535845-36535864 | None:intergenic | 25.0% |
| ! | CAAGATCAATAAACAATCAA+AGG | + | chr6.3:36534474-36534493 | None:intergenic | 25.0% |
| ! | CTTCTAATTAAAGATGTCTT+TGG | + | chr6.3:36534640-36534659 | None:intergenic | 25.0% |
| !! | ATAATTTGTACATGATCGTA+TGG | + | chr6.3:36535414-36535433 | None:intergenic | 25.0% |
| !! | CTAATTTTGTAAGGTAGATT+AGG | + | chr6.3:36535564-36535583 | None:intergenic | 25.0% |
| !! | TTAACTAGTATTTTGTGGAT+GGG | - | chr6.3:36535669-36535688 | MS.gene80532:intron | 25.0% |
| !! | TTTTGTATATTCTTTTTGCG+AGG | - | chr6.3:36534139-36534158 | MS.gene80532:intron | 25.0% |
| !!! | ACATATTCACTAGTTGTTTT+CGG | - | chr6.3:36535010-36535029 | MS.gene80532:intron | 25.0% |
| !!! | GATTTTTATTTGACATTCCT+TGG | - | chr6.3:36535206-36535225 | MS.gene80532:intron | 25.0% |
| !!! | GTGATTTTTGTTGTGAATTT+TGG | - | chr6.3:36533828-36533847 | MS.gene80532:intron | 25.0% |
| !!! | TGAATTTTGGTAAAGCTTAT+GGG | - | chr6.3:36533874-36533893 | MS.gene80532:intron | 25.0% |
| !!! | TGTGATTTTGTTGTGAATAT+TGG | - | chr6.3:36533797-36533816 | MS.gene80532:intron | 25.0% |
| !!! | TGTGTTTGATTGTTTTGTTT+TGG | - | chr6.3:36534715-36534734 | MS.gene80532:intron | 25.0% |
| !!! | TTTATTTTTATAAGCACTCC+AGG | - | chr6.3:36535033-36535052 | MS.gene80532:intron | 25.0% |
| AAGTTTGAATTCCATACCAT+AGG | + | chr6.3:36535368-36535387 | None:intergenic | 30.0% | |
| AATTGCCGAGTGTAAATTTA+TGG | - | chr6.3:36535837-36535856 | MS.gene80532:intron | 30.0% | |
| ACCTTACAAAATTAGTGTAC+AGG | - | chr6.3:36535569-36535588 | MS.gene80532:intron | 30.0% | |
| AGAACAATATAAGCCTGAAA+AGG | + | chr6.3:36535806-36535825 | None:intergenic | 30.0% | |
| ATAAGGTTACTGGAAAAGTT+AGG | - | chr6.3:36534284-36534303 | MS.gene80532:intron | 30.0% | |
| ATACCATAGGATCAAGTAAA+AGG | + | chr6.3:36535355-36535374 | None:intergenic | 30.0% | |
| ATTTACACTCGGCAATTAAT+AGG | + | chr6.3:36535834-36535853 | None:intergenic | 30.0% | |
| GTGCTGTATTAGTATTTGTT+AGG | - | chr6.3:36535277-36535296 | MS.gene80532:intron | 30.0% | |
| GTTCGTGAAAACAACTTAAT+AGG | - | chr6.3:36535059-36535078 | MS.gene80532:intron | 30.0% | |
| TTGTAAACTATGTTCAGACT+TGG | - | chr6.3:36534919-36534938 | MS.gene80532:CDS | 30.0% | |
| ! | ACCTGTACACTAATTTTGTA+AGG | + | chr6.3:36535573-36535592 | None:intergenic | 30.0% |
| ! | GTTAACTAGTATTTTGTGGA+TGG | - | chr6.3:36535668-36535687 | MS.gene80532:intron | 30.0% |
| ! | TCATTTTCTCAAATTACCAC+TGG | + | chr6.3:36534548-36534567 | None:intergenic | 30.0% |
| ! | TTTTACTTGATCCTATGGTA+TGG | - | chr6.3:36535354-36535373 | MS.gene80532:CDS | 30.0% |
| !! | GATGTTTTTGTCGTGAATTT+TGG | - | chr6.3:36533765-36533784 | MS.gene80532:CDS | 30.0% |
| !! | GGAAAAGCATTGTAAAGAAA+AGG | + | chr6.3:36535630-36535649 | None:intergenic | 30.0% |
| !! | GTGAATTTTGGTAAAGCTTA+TGG | - | chr6.3:36533873-36533892 | MS.gene80532:intron | 30.0% |
| !! | TGGGATTTTGTTCTGAATTT+TGG | - | chr6.3:36533893-36533912 | MS.gene80532:intron | 30.0% |
| !! | TTAAGAATTTGAGCGTTGAA+GGG | - | chr6.3:36535983-36536002 | MS.gene80532:intron | 30.0% |
| !!! | TGTGAAGTTTTTGAAGCATA+AGG | - | chr6.3:36534267-36534286 | MS.gene80532:intron | 30.0% |
| !!! | TTTTTGAAGCATAAGGTTAC+TGG | - | chr6.3:36534274-36534293 | MS.gene80532:intron | 30.0% |
| AACAATCAAAGGAGAGAATC+CGG | + | chr6.3:36534463-36534482 | None:intergenic | 35.0% | |
| ACACCAGAAAAAGAAAGCAA+GGG | - | chr6.3:36536078-36536097 | MS.gene80532:CDS | 35.0% | |
| ATTGATGTAAACACGTGTGT+CGG | - | chr6.3:36534426-36534445 | MS.gene80532:intron | 35.0% | |
| CTTCAACGCTCAAATTCTTA+AGG | + | chr6.3:36535984-36536003 | None:intergenic | 35.0% | |
| CTTGCTTTCCTCTTTATTCA+GGG | + | chr6.3:36535938-36535957 | None:intergenic | 35.0% | |
| GGAATGAGAAATCTTGTGTT+TGG | - | chr6.3:36534775-36534794 | MS.gene80532:intron | 35.0% | |
| GTAAGGTAGATTAGGATCAT+TGG | + | chr6.3:36535556-36535575 | None:intergenic | 35.0% | |
| GTGAAATGTTTGCAATCCAA+TGG | + | chr6.3:36535784-36535803 | None:intergenic | 35.0% | |
| TAAGTTTGTGACATTACCGA+AGG | - | chr6.3:36535482-36535501 | MS.gene80532:intron | 35.0% | |
| TCAATACTCACTGAGATGAT+TGG | + | chr6.3:36534347-36534366 | None:intergenic | 35.0% | |
| TCTATGAATCACTGACACAT+CGG | - | chr6.3:36534374-36534393 | MS.gene80532:intron | 35.0% | |
| TTGGCTTAACTCACTGAATT+TGG | - | chr6.3:36535255-36535274 | MS.gene80532:intron | 35.0% | |
| ! | ATGCTTTTCCCTGCTTATAA+TGG | - | chr6.3:36535640-36535659 | MS.gene80532:intron | 35.0% |
| ! | CAGGGTTAACTAGTATTTTG+TGG | - | chr6.3:36535664-36535683 | MS.gene80532:intron | 35.0% |
| ! | CTTCCTTTTACTTGATCCTA+TGG | - | chr6.3:36535349-36535368 | MS.gene80532:CDS | 35.0% |
| ! | TGCAAACATTTCACCTTTTC+AGG | - | chr6.3:36535790-36535809 | MS.gene80532:intron | 35.0% |
| ! | TGCTTTTCCCTGCTTATAAT+GGG | - | chr6.3:36535641-36535660 | MS.gene80532:intron | 35.0% |
| ! | TTTTACCTAACATGATCCTG+TGG | - | chr6.3:36535703-36535722 | MS.gene80532:intron | 35.0% |
| !! | CTTAAGAATTTGAGCGTTGA+AGG | - | chr6.3:36535982-36536001 | MS.gene80532:intron | 35.0% |
| !! | TTTCTCCTTAGTTTTCTCCT+CGG | + | chr6.3:36536055-36536074 | None:intergenic | 35.0% |
| AAGGTGCACATAATTCGACA+AGG | + | chr6.3:36535611-36535630 | None:intergenic | 40.0% | |
| ACATCCAAACGTGAAGATGT+GGG | - | chr6.3:36535439-36535458 | MS.gene80532:CDS | 40.0% | |
| ACTTCGTGAAGTTGGATGAT+CGG | + | chr6.3:36533620-36533639 | None:intergenic | 40.0% | |
| ATCTTCCTCTTCGTGATGAT+CGG | + | chr6.3:36533555-36533574 | None:intergenic | 40.0% | |
| CCTGAATAAAGAGGAAAGCA+AGG | - | chr6.3:36535936-36535955 | MS.gene80532:intron | 40.0% | |
| CCTTGCTTTCCTCTTTATTC+AGG | + | chr6.3:36535939-36535958 | None:intergenic | 40.0% | |
| GAAAACCGAGGAGAAAACTA+AGG | - | chr6.3:36536047-36536066 | MS.gene80532:CDS | 40.0% | |
| GAAAGACGAAGAGAAATCTG+AGG | - | chr6.3:36536023-36536042 | MS.gene80532:CDS | 40.0% | |
| GACACCAGAAAAAGAAAGCA+AGG | - | chr6.3:36536077-36536096 | MS.gene80532:CDS | 40.0% | |
| GATTAATCAGTGCAACACCA+AGG | + | chr6.3:36535226-36535245 | None:intergenic | 40.0% | |
| GATTCCCTTCCTTGTCAAAT+CGG | + | chr6.3:36534222-36534241 | None:intergenic | 40.0% | |
| GTTAGATTGCAGAAGGTTCA+TGG | - | chr6.3:36535888-36535907 | MS.gene80532:intron | 40.0% | |
| TCGTACTGTTAGATTGCAGA+AGG | - | chr6.3:36535881-36535900 | MS.gene80532:intron | 40.0% | |
| TGCTGAATCCCTGAATAAAG+AGG | - | chr6.3:36535927-36535946 | MS.gene80532:intron | 40.0% | |
| TTCTTCATCTTCTTCACCAG+TGG | + | chr6.3:36533651-36533670 | None:intergenic | 40.0% | |
| TTGACAAGGAAGGGAATCAA+TGG | - | chr6.3:36534224-36534243 | MS.gene80532:intron | 40.0% | |
| ! | TCTCCCTTGCTTTCTTTTTC+TGG | + | chr6.3:36536084-36536103 | None:intergenic | 40.0% |
| ! | TGGATAGAGAGAGAGTATAC+AGG | + | chr6.3:36533685-36533704 | None:intergenic | 40.0% |
| !! | GAAACTGTACCGATTTGACA+AGG | - | chr6.3:36534210-36534229 | MS.gene80532:intron | 40.0% |
| !! | GTTCAGACTTGGTGCTTATT+TGG | - | chr6.3:36534930-36534949 | MS.gene80532:intron | 40.0% |
| !! | GTTGTTTTCACGAACTATCC+TGG | + | chr6.3:36535054-36535073 | None:intergenic | 40.0% |
| !! | TGCTCTTGCACAGTCATTTT+AGG | + | chr6.3:36534750-36534769 | None:intergenic | 40.0% |
| !! | TGTACCGATTTGACAAGGAA+GGG | - | chr6.3:36534215-36534234 | MS.gene80532:intron | 40.0% |
| !! | TGTTACATTAGAAGTGCCAC+AGG | + | chr6.3:36535722-36535741 | None:intergenic | 40.0% |
| AAACAGCGACTTCGTGAAGT+TGG | + | chr6.3:36533628-36533647 | None:intergenic | 45.0% | |
| AACCCTGCCCATTATAAGCA+GGG | + | chr6.3:36535651-36535670 | None:intergenic | 45.0% | |
| AAGTGCCACAGGATCATGTT+AGG | + | chr6.3:36535711-36535730 | None:intergenic | 45.0% | |
| AATCACTGACACATCGGCAT+TGG | - | chr6.3:36534380-36534399 | MS.gene80532:intron | 45.0% | |
| CAAGGAAGGGAATCAATGGA+AGG | - | chr6.3:36534228-36534247 | MS.gene80532:intron | 45.0% | |
| CACTGACATGTTAACACCAG+TGG | - | chr6.3:36534529-36534548 | MS.gene80532:intron | 45.0% | |
| CATTGCTGCTGTCTTTCCAT+TGG | - | chr6.3:36535765-36535784 | MS.gene80532:intron | 45.0% | |
| GAAAAGAAAGTCGAAGAGCC+TGG | - | chr6.3:36536108-36536127 | MS.gene80532:CDS | 45.0% | |
| GAAATCTGAGGAGAAAACCG+AGG | - | chr6.3:36536035-36536054 | MS.gene80532:CDS | 45.0% | |
| GACATCCAAACGTGAAGATG+TGG | - | chr6.3:36535438-36535457 | MS.gene80532:CDS | 45.0% | |
| GTCAGATGCTAACATGTGTC+AGG | - | chr6.3:36534599-36534618 | MS.gene80532:intron | 45.0% | |
| TAACCCTGCCCATTATAAGC+AGG | + | chr6.3:36535652-36535671 | None:intergenic | 45.0% | |
| ! | GTCAGTGTCATTGTTGTGTC+AGG | + | chr6.3:36534516-36534535 | None:intergenic | 45.0% |
| !! | CTGTACCGATTTGACAAGGA+AGG | - | chr6.3:36534214-36534233 | MS.gene80532:intron | 45.0% |
| !! | TGTGTCGGTGTTGTAGATAC+CGG | - | chr6.3:36534441-36534460 | MS.gene80532:intron | 45.0% |
| !! | TTCCCTGCTTATAATGGGCA+GGG | - | chr6.3:36535646-36535665 | MS.gene80532:intron | 45.0% |
| !! | TTTCCCTGCTTATAATGGGC+AGG | - | chr6.3:36535645-36535664 | MS.gene80532:intron | 45.0% |
| ATCTTGTGTTTGGCACGCGA+AGG | - | chr6.3:36534785-36534804 | MS.gene80532:intron | 50.0% | |
| CTCACCCACATCTTCACGTT+TGG | + | chr6.3:36535446-36535465 | None:intergenic | 50.0% | |
| CTTAAGGAGATCAGCAGCAG+TGG | + | chr6.3:36535968-36535987 | None:intergenic | 50.0% | |
| CTTAGATGCCACCTGTGTGT+GGG | - | chr6.3:36535520-36535539 | MS.gene80532:intron | 50.0% | |
| GGGAATCAATGGAAGGAACG+AGG | - | chr6.3:36534235-36534254 | MS.gene80532:intron | 50.0% | |
| ! | ATGACTGTGCAAGAGCATGC+TGG | - | chr6.3:36534753-36534772 | MS.gene80532:intron | 50.0% |
| ! | TGACTGTGCAAGAGCATGCT+GGG | - | chr6.3:36534754-36534773 | MS.gene80532:intron | 50.0% |
| !! | AAGCACCGATCATCACGAAG+AGG | - | chr6.3:36533547-36533566 | MS.gene80532:CDS | 50.0% |
| ACCGAAGGCTGTTGTGCATG+CGG | - | chr6.3:36535497-36535516 | MS.gene80532:intron | 55.0% | |
| CAATGGAAGGAACGAGGAGC+AGG | - | chr6.3:36534241-36534260 | MS.gene80532:intron | 55.0% | |
| CACGCGAAGGACTTTGCTGA+TGG | - | chr6.3:36534798-36534817 | MS.gene80532:intron | 55.0% | |
| GAAGAGGAAGATGTTCCCGC+CGG | - | chr6.3:36533563-36533582 | MS.gene80532:CDS | 55.0% | |
| GCTTAGATGCCACCTGTGTG+TGG | - | chr6.3:36535519-36535538 | MS.gene80532:intron | 55.0% | |
| ! | CACGAAGTCGCTGTTTCCAC+TGG | - | chr6.3:36533632-36533651 | MS.gene80532:CDS | 55.0% |
| CCACCTGTGTGTGGGCACAA+TGG | - | chr6.3:36535528-36535547 | MS.gene80532:intron | 60.0% | |
| CCATTGTGCCCACACACAGG+TGG | + | chr6.3:36535531-36535550 | None:intergenic | 60.0% | |
| GATCGGAGCGATTTGAGCGC+CGG | + | chr6.3:36533603-36533622 | None:intergenic | 60.0% | |
| GCCGCATGCACAACAGCCTT+CGG | + | chr6.3:36535501-36535520 | None:intergenic | 60.0% | |
| GCCGGCGATGAAGAAGACAC+CGG | - | chr6.3:36533581-36533600 | MS.gene80532:CDS | 60.0% | |
| GCCGGTGTCTTCTTCATCGC+CGG | + | chr6.3:36533585-36533604 | None:intergenic | 60.0% | |
| GGTGTCTTCTTCATCGCCGG+CGG | + | chr6.3:36533582-36533601 | None:intergenic | 60.0% | |
| GTGTCTTCTTCATCGCCGGC+GGG | + | chr6.3:36533581-36533600 | None:intergenic | 60.0% | |
| GCGCCATTGTGCCCACACAC+AGG | + | chr6.3:36535534-36535553 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 36533539 | 36536143 | 36533539 | ID=MS.gene80532 |
| chr6.3 | mRNA | 36533539 | 36536143 | 36533539 | ID=MS.gene80532.t1;Parent=MS.gene80532 |
| chr6.3 | exon | 36535998 | 36536143 | 36535998 | ID=MS.gene80532.t1.exon1;Parent=MS.gene80532.t1 |
| chr6.3 | CDS | 36535998 | 36536143 | 36535998 | ID=cds.MS.gene80532.t1;Parent=MS.gene80532.t1 |
| chr6.3 | exon | 36535327 | 36535478 | 36535327 | ID=MS.gene80532.t1.exon2;Parent=MS.gene80532.t1 |
| chr6.3 | CDS | 36535327 | 36535478 | 36535327 | ID=cds.MS.gene80532.t1;Parent=MS.gene80532.t1 |
| chr6.3 | exon | 36534815 | 36534940 | 36534815 | ID=MS.gene80532.t1.exon3;Parent=MS.gene80532.t1 |
| chr6.3 | CDS | 36534815 | 36534940 | 36534815 | ID=cds.MS.gene80532.t1;Parent=MS.gene80532.t1 |
| chr6.3 | exon | 36533539 | 36533789 | 36533539 | ID=MS.gene80532.t1.exon4;Parent=MS.gene80532.t1 |
| chr6.3 | CDS | 36533539 | 36533789 | 36533539 | ID=cds.MS.gene80532.t1;Parent=MS.gene80532.t1 |
| Gene Sequence |
| Protein sequence |
