AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene81095


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene81095.t1 MTR_2g060900 94.158 291 12 2 1 291 1 286 0.0 531
MS.gene81095.t1 MTR_5g072760 43.860 228 119 3 65 291 37 256 5.85e-55 179
MS.gene81095.t1 MTR_5g072760 43.860 228 119 3 65 291 37 256 1.35e-54 179
MS.gene81095.t1 MTR_2g100240 41.395 215 123 2 60 274 40 251 2.24e-50 168
MS.gene81095.t1 MTR_7g019180 42.466 219 126 0 61 279 47 265 1.11e-49 170
MS.gene81095.t1 MTR_4g129730 35.458 251 137 4 57 288 10 254 5.45e-42 145
MS.gene81095.t1 MTR_4g129730 40.415 193 110 1 57 249 10 197 6.53e-42 145
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene81095.t1 AT3G14750 53.821 301 116 7 1 290 1 289 8.88e-90 270
MS.gene81095.t1 AT1G67170 40.625 192 111 1 59 247 52 243 3.24e-44 154
MS.gene81095.t1 AT1G67170 40.625 192 111 1 59 247 52 243 3.24e-44 154
MS.gene81095.t1 AT1G55170 38.889 216 130 1 72 287 55 268 2.22e-41 144
MS.gene81095.t1 AT2G30120 34.335 233 147 2 62 291 36 265 1.95e-34 127
MS.gene81095.t1 AT2G30120 34.335 233 147 2 62 291 36 265 2.77e-34 125
MS.gene81095.t1 AT2G30120 34.335 233 147 2 62 291 36 265 5.92e-34 125
MS.gene81095.t1 AT2G30120 33.333 144 96 0 62 205 36 179 3.42e-23 94.0
MS.gene81095.t1 AT2G30120 33.333 141 94 0 62 202 36 176 1.14e-22 92.8
MS.gene81095.t1 AT2G30120 33.333 141 94 0 62 202 36 176 1.14e-22 92.8
MS.gene81095.t1 AT5G61920 28.000 225 143 3 23 247 30 235 7.77e-21 89.4
MS.gene81095.t1 AT5G61920 28.000 225 143 3 23 247 30 235 7.77e-21 89.4
MS.gene81095.t1 AT5G61920 28.000 225 143 3 23 247 30 235 7.77e-21 89.4
MS.gene81095.t1 AT5G61920 28.000 225 143 3 23 247 30 235 7.77e-21 89.4
MS.gene81095.t1 AT5G61920 28.000 225 143 3 23 247 30 235 7.77e-21 89.4
MS.gene81095.t1 AT5G61920 30.899 178 121 2 71 247 18 194 3.94e-18 80.9

Find 0 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATCAATTTAATGATTGT+TGG + 14513:16653-16672 MS.gene81095:intron 15.0%
!!! ACACTAAATTCTTAATTTTT+AGG - 14513:17098-17117 None:intergenic 15.0%
!!! ACTAAATTCTTAATTTTTAG+GGG - 14513:17096-17115 None:intergenic 15.0%
!!! CACTAAATTCTTAATTTTTA+GGG - 14513:17097-17116 None:intergenic 15.0%
!!! TAAATTATGTTTTGAATGTT+AGG + 14513:16720-16739 MS.gene81095:intron 15.0%
!! CACAAATATATACATATTAC+AGG - 14513:16697-16716 None:intergenic 20.0%
!! CATGTCACATAATTTATAAT+AGG - 14513:16617-16636 None:intergenic 20.0%
!! TGCAATTCTATAATCAATTA+TGG + 14513:16514-16533 MS.gene81095:intron 20.0%
!!! CAAATCACATTTTAAAACAT+TGG - 14513:16282-16301 None:intergenic 20.0%
!!! AAAACATTGGTTTCTAATAC+TGG - 14513:16269-16288 None:intergenic 25.0%
AACTATCAAGTATCACCTTA+TGG - 14513:16557-16576 None:intergenic 30.0%
GCTATTGAATATGAGAAGAA+AGG + 14513:16831-16850 MS.gene81095:CDS 30.0%
GTATGTTTATATTTGCCTTG+TGG + 14513:17034-17053 MS.gene81095:intron 30.0%
TTCACAGAAAACTATGAACA+TGG + 14513:16855-16874 MS.gene81095:CDS 30.0%
! AAAACCTTTTCACAACCATA+AGG + 14513:16539-16558 MS.gene81095:intron 30.0%
! ATATTCAATAGCAGCTCTAA+AGG - 14513:16823-16842 None:intergenic 30.0%
! CAAGGGTATAATCCAAATTA+TGG + 14513:17170-17189 MS.gene81095:CDS 30.0%
! GGTGATACTTGATAGTTATA+TGG + 14513:16560-16579 MS.gene81095:intron 30.0%
! TTTGCTTTGATTTCATCTGT+AGG + 14513:17146-17165 MS.gene81095:intron 30.0%
ATCACCTTATGGTTGTGAAA+AGG - 14513:16546-16565 None:intergenic 35.0%
ATTTCCGCGAATCTCAATTA+GGG + 14513:15779-15798 MS.gene81095:CDS 35.0%
TGATTTCATCTGTAGGTCAA+GGG + 14513:17153-17172 MS.gene81095:intron 35.0%
TTGATTTCATCTGTAGGTCA+AGG + 14513:17152-17171 MS.gene81095:intron 35.0%
!! GTTTTGAATGTTAGGTGTGT+AGG + 14513:16728-16747 MS.gene81095:intron 35.0%
AACAAGAATTGCAACGTGCA+AGG + 14513:16232-16251 MS.gene81095:CDS 40.0%
AATCCTTACCCTGCCTATTA+TGG + 14513:17218-17237 MS.gene81095:CDS 40.0%
AATTATGGCAATGCTGAGAC+TGG + 14513:17185-17204 MS.gene81095:CDS 40.0%
AGTCATCCTACTCAAATCCT+GGG - 14513:16163-16182 None:intergenic 40.0%
ATCTCTGGTTGTCACCTAAT+AGG - 14513:15885-15904 None:intergenic 40.0%
CTAACCCTAATTGAGATTCG+CGG - 14513:15786-15805 None:intergenic 40.0%
CTATGAACATGGTCAAGTGA+TGG + 14513:16866-16885 MS.gene81095:CDS 40.0%
GATGAGGGAATTGTATGAGA+AGG + 14513:16011-16030 MS.gene81095:CDS 40.0%
GATTCATGCCATAATAGGCA+GGG - 14513:17229-17248 None:intergenic 40.0%
GATTTCCGCGAATCTCAATT+AGG + 14513:15778-15797 MS.gene81095:CDS 40.0%
GCATTATAAGGAGTCGCTTA+GGG + 14513:15972-15991 MS.gene81095:CDS 40.0%
GTCTCAGCATTGCCATAATT+TGG - 14513:17185-17204 None:intergenic 40.0%
TAACCAGCAGAAATTCCACA+AGG - 14513:17052-17071 None:intergenic 40.0%
TCAACACGAATTACAGCGTA+TGG + 14513:15948-15967 MS.gene81095:CDS 40.0%
TCAACATCAGCCATTAAAGC+CGG - 14513:16204-16223 None:intergenic 40.0%
TGATTCATGCCATAATAGGC+AGG - 14513:17230-17249 None:intergenic 40.0%
TTGAATCTCACCGTGTTGTA+CGG - 14513:15860-15879 None:intergenic 40.0%
! ACAGATTCGTGGTGATGTTA+AGG + 14513:16089-16108 MS.gene81095:CDS 40.0%
! TGCTTCGAGTTCTTGCTTTA+AGG - 14513:15926-15945 None:intergenic 40.0%
! TTAAGGAGCTTAGTGCTGTT+AGG + 14513:16106-16125 MS.gene81095:CDS 40.0%
!! GGATGACTGCTGATTTGAAA+CGG + 14513:16175-16194 MS.gene81095:CDS 40.0%
!! TAGCAGCTCTAAAGGAAAAG+AGG - 14513:16815-16834 None:intergenic 40.0%
AATGCTGAGACTGGATATGC+TGG + 14513:17194-17213 MS.gene81095:CDS 45.0%
ACAGCGTATGGCGCATTATA+AGG + 14513:15960-15979 MS.gene81095:CDS 45.0%
AGAAGTTAGTTGCCATGGCT+CGG + 14513:16892-16911 MS.gene81095:CDS 45.0%
AGGGAATTGTATGAGAAGGC+GGG + 14513:16015-16034 MS.gene81095:CDS 45.0%
ATGCCATAATAGGCAGGGTA+AGG - 14513:17224-17243 None:intergenic 45.0%
CAATGTCCCAGGATTTGAGT+AGG + 14513:16154-16173 MS.gene81095:CDS 45.0%
CACATGCGCAATTGTATACC+TGG - 14513:17011-17030 None:intergenic 45.0%
CAGTCATCCTACTCAAATCC+TGG - 14513:16164-16183 None:intergenic 45.0%
CGCATTATAAGGAGTCGCTT+AGG + 14513:15971-15990 MS.gene81095:CDS 45.0%
CGCGAATCTCAATTAGGGTT+AGG + 14513:15784-15803 MS.gene81095:CDS 45.0%
GAATGTTAGGTGTGTAGGTC+AGG + 14513:16733-16752 MS.gene81095:intron 45.0%
GAGGGAATTGTATGAGAAGG+CGG + 14513:16014-16033 MS.gene81095:CDS 45.0%
GGAGAAGAAGTTAGTTGCCA+TGG + 14513:16887-16906 MS.gene81095:CDS 45.0%
GGATTTGTCTGGTCAAGTTC+AGG + 14513:16131-16150 MS.gene81095:CDS 45.0%
GGTGAGATTCAAGGCCTATT+AGG + 14513:15868-15887 MS.gene81095:CDS 45.0%
GTACAACACGGTGAGATTCA+AGG + 14513:15859-15878 MS.gene81095:CDS 45.0%
GTTGGTTGTATAGCGTGCAA+AGG + 14513:16671-16690 MS.gene81095:intron 45.0%
TTATAAGGAGTCGCTTAGGG+CGG + 14513:15975-15994 MS.gene81095:CDS 45.0%
TTGCCTTGTGGAATTTCTGC+TGG + 14513:17046-17065 MS.gene81095:intron 45.0%
!! TGCTGATTTGAAACGGATGC+CGG + 14513:16182-16201 MS.gene81095:CDS 45.0%
!! TAATATATATATAATACATT+GGG - 14513:16770-16789 None:intergenic 5.0%
!! TTAATATATATATAATACAT+TGG - 14513:16771-16790 None:intergenic 5.0%
AATCGTCTAGGAGAGCTGGA+TGG - 14513:15762-15781 None:intergenic 50.0%
ATCGTCTAGGAGAGCTGGAT+GGG - 14513:15761-15780 None:intergenic 50.0%
GAAGTTAGTTGCCATGGCTC+GGG + 14513:16893-16912 MS.gene81095:CDS 50.0%
GAGACGTTCTTCAATGACGG+CGG - 14513:15836-15855 None:intergenic 50.0%
GAGATTCGCGGAAATCGTCT+AGG - 14513:15774-15793 None:intergenic 50.0%
GCTGTTAGGCAGGATTTGTC+TGG + 14513:16120-16139 MS.gene81095:CDS 50.0%
GGCGAGACGTTCTTCAATGA+CGG - 14513:15839-15858 None:intergenic 50.0%
TCAAGTTCAGGCAATGTCCC+AGG + 14513:16143-16162 MS.gene81095:CDS 50.0%
!! GAAACGGATGCCGGCTTTAA+TGG + 14513:16191-16210 MS.gene81095:CDS 50.0%
!! TTGCTTTAAGGCCACGTGTG+TGG - 14513:15914-15933 None:intergenic 50.0%
AAGATGGGGTCATGGAGTGG+CGG - 14513:15709-15728 None:intergenic 55.0%
ACCTGGATTCCCAACAGCAG+TGG - 14513:16994-17013 None:intergenic 55.0%
ATGGAGTGGCGGTGATATGG+CGG - 14513:15698-15717 None:intergenic 55.0%
CGGAAATCGTCTAGGAGAGC+TGG - 14513:15766-15785 None:intergenic 55.0%
CGTGTGTGGCTGCAAATCTC+TGG - 14513:15900-15919 None:intergenic 55.0%
GAACGTCTCGCCGTACAACA+CGG + 14513:15847-15866 MS.gene81095:CDS 55.0%
GAGATTTGCAGCCACACACG+TGG + 14513:15900-15919 MS.gene81095:CDS 55.0%
GGATACGGAGGTGAGGATGA+GGG + 14513:15996-16015 MS.gene81095:CDS 55.0%
GTCATGGAGTGGCGGTGATA+TGG - 14513:15701-15720 None:intergenic 55.0%
GTTCTTCAATGACGGCGGCA+GGG - 14513:15831-15850 None:intergenic 55.0%
TACCTCAGTGGCACGAAGCT+CGG - 14513:16052-16071 None:intergenic 55.0%
TCGTCTAGGAGAGCTGGATG+GGG - 14513:15760-15779 None:intergenic 55.0%
TGCCACTGAGGTAGCTAAGG+CGG + 14513:16059-16078 MS.gene81095:CDS 55.0%
TGGATTCCCAACAGCAGTGG+CGG - 14513:16991-17010 None:intergenic 55.0%
TTTCTCCATCTCCCGAGCCA+TGG - 14513:16907-16926 None:intergenic 55.0%
! GGAGCTTAGTGCTGTTAGGC+AGG + 14513:16110-16129 MS.gene81095:CDS 55.0%
! TCGTGCCACTGAGGTAGCTA+AGG + 14513:16056-16075 MS.gene81095:CDS 55.0%
CAGGGTGGAGGTGAGGAAGA+CGG - 14513:15813-15832 None:intergenic 60.0%
CGGATACGGAGGTGAGGATG+AGG + 14513:15995-16014 MS.gene81095:CDS 60.0%
CGTTCTTCAATGACGGCGGC+AGG - 14513:15832-15851 None:intergenic 60.0%
CTCCGCCTTAGCTACCTCAG+TGG - 14513:16064-16083 None:intergenic 60.0%
GCATGGCGAAGATGGGGTCA+TGG - 14513:15717-15736 None:intergenic 60.0%
GCCACTGCTGTTGGGAATCC+AGG + 14513:16990-17009 MS.gene81095:CDS 60.0%
GCGAAGATGGGGTCATGGAG+TGG - 14513:15712-15731 None:intergenic 60.0%
GCGGAGCTGCAACAGATTCG+TGG + 14513:16078-16097 MS.gene81095:CDS 60.0%
GGAGTCGCTTAGGGCGGATA+CGG + 14513:15981-16000 MS.gene81095:CDS 60.0%
GTATGAGAAGGCGGGTGCCT+TGG + 14513:16023-16042 MS.gene81095:CDS 60.0%
TCTAGGAGAGCTGGATGGGG+TGG - 14513:15757-15776 None:intergenic 60.0%
TTAGGGCGGATACGGAGGTG+AGG + 14513:15989-16008 MS.gene81095:CDS 60.0%
! AGTTGCCATGGCTCGGGAGA+TGG + 14513:16899-16918 MS.gene81095:CDS 60.0%
ACCGCCTCGCATGGCGAAGA+TGG - 14513:15725-15744 None:intergenic 65.0%
ATCTTCGCCATGCGAGGCGG+TGG + 14513:15724-15743 MS.gene81095:CDS 65.0%
CCCATCTTCGCCATGCGAGG+CGG + 14513:15721-15740 MS.gene81095:CDS 65.0%
CCGCCTCGCATGGCGAAGAT+GGG - 14513:15724-15743 None:intergenic 65.0%
CGCCTCGCATGGCGAAGATG+GGG - 14513:15723-15742 None:intergenic 65.0%
CTTCAATGACGGCGGCAGGG+TGG - 14513:15828-15847 None:intergenic 65.0%
GACCCCATCTTCGCCATGCG+AGG + 14513:15718-15737 MS.gene81095:CDS 65.0%
GATGAGGGTGGCCGCGGTTT+CGG - 14513:15660-15679 None:intergenic 65.0%
GGAGAGCTGGATGGGGTGGA+TGG - 14513:15753-15772 None:intergenic 65.0%
GGCACGAAGCTCGGCTTCCA+AGG - 14513:16043-16062 None:intergenic 65.0%
GGTGGAGGTGAGGAAGACGG+TGG - 14513:15810-15829 None:intergenic 65.0%
GTCGCTTAGGGCGGATACGG+AGG + 14513:15984-16003 MS.gene81095:CDS 65.0%
! AGCCGAGCTTCGTGCCACTG+AGG + 14513:16047-16066 MS.gene81095:CDS 65.0%
AACAGCAGTGGCGGCAGCGG+TGG - 14513:16982-17001 None:intergenic 70.0%
ACCGCTGCCGCCACTGCTGT+TGG + 14513:16981-17000 MS.gene81095:CDS 70.0%
ATGGCCTCCACCGCCTCGCA+TGG - 14513:15734-15753 None:intergenic 70.0%
CAATGACGGCGGCAGGGTGG+AGG - 14513:15825-15844 None:intergenic 70.0%
CCCAACAGCAGTGGCGGCAG+CGG - 14513:16985-17004 None:intergenic 70.0%
CCGCTGCCGCCACTGCTGTT+GGG + 14513:16982-17001 MS.gene81095:CDS 70.0%
CGGTGATATGGCGGCGCGTG+GGG - 14513:15689-15708 None:intergenic 70.0%
GCGGTGATATGGCGGCGCGT+GGG - 14513:15690-15709 None:intergenic 70.0%
GGTGATATGGCGGCGCGTGG+GGG - 14513:15688-15707 None:intergenic 70.0%
TTCGCCATGCGAGGCGGTGG+AGG + 14513:15727-15746 MS.gene81095:CDS 70.0%
!! CGCGTGGGGGTGGTGGATGA+GGG - 14513:15675-15694 None:intergenic 70.0%
!! GTGGGGGTGGTGGATGAGGG+TGG - 14513:15672-15691 None:intergenic 70.0%
!! GTGGTGGATGAGGGTGGCCG+CGG - 14513:15666-15685 None:intergenic 70.0%
ACGGCGGCAGGGTGGAGGTG+AGG - 14513:15820-15839 None:intergenic 75.0%
AGCAGTGGCGGCAGCGGTGG+CGG - 14513:16979-16998 None:intergenic 75.0%
GATATGGCGGCGCGTGGGGG+TGG - 14513:15685-15704 None:intergenic 75.0%
GGCGGTGATATGGCGGCGCG+TGG - 14513:15691-15710 None:intergenic 75.0%
!! GCGCGTGGGGGTGGTGGATG+AGG - 14513:15676-15695 None:intergenic 75.0%
! ATGGCGGCGCGTGGGGGTGG+TGG - 14513:15682-15701 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
14513 gene 15649 17250 15649 ID=MS.gene81095
14513 mRNA 15649 17250 15649 ID=MS.gene81095.t1;Parent=MS.gene81095
14513 exon 15649 16253 15649 ID=MS.gene81095.t1.exon1;Parent=MS.gene81095.t1
14513 CDS 15649 16253 15649 ID=cds.MS.gene81095.t1;Parent=MS.gene81095.t1
14513 exon 16827 17011 16827 ID=MS.gene81095.t1.exon2;Parent=MS.gene81095.t1
14513 CDS 16827 17011 16827 ID=cds.MS.gene81095.t1;Parent=MS.gene81095.t1
14513 exon 17168 17250 17168 ID=MS.gene81095.t1.exon3;Parent=MS.gene81095.t1
14513 CDS 17168 17250 17168 ID=cds.MS.gene81095.t1;Parent=MS.gene81095.t1
Gene Sequence

>MS.gene81095

ATGTCAAACCGAAACCGCGGCCACCCTCATCCACCACCCCCACGCGCCGCCATATCACCGCCACTCCATGACCCCATCTTCGCCATGCGAGGCGGTGGAGGCCATCCACCCCATCCAGCTCTCCTAGACGATTTCCGCGAATCTCAATTAGGGTTAGGCCACCGTCTTCCTCACCTCCACCCTGCCGCCGTCATTGAAGAACGTCTCGCCGTACAACACGGTGAGATTCAAGGCCTATTAGGTGACAACCAGAGATTTGCAGCCACACACGTGGCCTTAAAGCAAGAACTCGAAGCAGCTCAACACGAATTACAGCGTATGGCGCATTATAAGGAGTCGCTTAGGGCGGATACGGAGGTGAGGATGAGGGAATTGTATGAGAAGGCGGGTGCCTTGGAAGCCGAGCTTCGTGCCACTGAGGTAGCTAAGGCGGAGCTGCAACAGATTCGTGGTGATGTTAAGGAGCTTAGTGCTGTTAGGCAGGATTTGTCTGGTCAAGTTCAGGCAATGTCCCAGGATTTGAGTAGGATGACTGCTGATTTGAAACGGATGCCGGCTTTAATGGCTGATGTTGATGCTATGAAACAAGAATTGCAACGTGCAAGGTAGTACTAGTACCAGTATTAGAAACCAATGTTTTAAAATGTGATTTGCGTTATTGTAGTTATGCTGCAACTGCGATACTTGATGTTGCGAAGAATTGCACATGAAGACGACACTATGATTTAGAAAAAATCTCGATATTGTATTTGTGATTGCAATTCAAAAAAGTATTGACATTGTGACTGCAACTTATATGCTGCATACAATTATGATTGTTTTTTTGAATTATGTCACTAGACGTTAACAATATATTTACAAGAGTTGCAATTCTATAATCAATTATGGAGAAAACCTTTTCACAACCATAAGGTGATACTTGATAGTTATATGGATCAAATGATACTTTCATATCATGTTCAAGTCCTATTATAAATTATGTGACATGACAGATCATTTAAGTCTAAATCAATTTAATGATTGTTGGTTGTATAGCGTGCAAAGGCCTGTAATATGTATATATTTGTGATTTAAATTATGTTTTGAATGTTAGGTGTGTAGGTCAGGTGAGAGTGAGACCCAATGTATTATATATATATTAACACTACTCTTATTTTTTGTTGCCTCTTTTCCTTTAGAGCTGCTATTGAATATGAGAAGAAAGGATTCACAGAAAACTATGAACATGGTCAAGTGATGGAGAAGAAGTTAGTTGCCATGGCTCGGGAGATGGAGAAATTGCGTGCAGAGATTGCAAATGCAGAGAAAAGAGCACGTGCTACTGCTGCCGCCACCGCTGCCGCCACTGCTGTTGGGAATCCAGGTATACAATTGCGCATGTGTGTGTATGTTTATATTTGCCTTGTGGAATTTCTGCTGGTTAATTGACTTAATCTTGCTTCTTCCCCTAAAAATTAAGAATTTAGTGTAATAATGTTCTAACTCTATTTTCTGTTCTTTGCTTTGATTTCATCTGTAGGTCAAGGGTATAATCCAAATTATGGCAATGCTGAGACTGGATATGCTGGAAATCCTTACCCTGCCTATTATGGCATGAATCAG

Protein sequence

>MS.gene81095.t1

MSNRNRGHPHPPPPRAAISPPLHDPIFAMRGGGGHPPHPALLDDFRESQLGLGHRLPHLHPAAVIEERLAVQHGEIQGLLGDNQRFAATHVALKQELEAAQHELQRMAHYKESLRADTEVRMRELYEKAGALEAELRATEVAKAELQQIRGDVKELSAVRQDLSGQVQAMSQDLSRMTADLKRMPALMADVDAMKQELQRARAAIEYEKKGFTENYEHGQVMEKKLVAMAREMEKLRAEIANAEKRARATAAATAAATAVGNPGQGYNPNYGNAETGYAGNPYPAYYGMNQ