AlfalfaGEDB | MS.gene81578

M. sativa cultivar XinJiangDaYe / MS.gene81578

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81578.t1	KEH28326.1	93.9	507	29	1	1	507	114	618	1.30E-273	951.8

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81578.t1	Q6UD73	89.3	507	54	0	1	507	114	620	1.2e-261	903.3

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81578.t1	A0A396HVJ5	89.3	507	54	0	1	507	114	620	3.7e-259	903.3

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene058171	MS.gene81578	0.805821	1.11E-49	-1.69E-46
MS.gene058175	MS.gene81578	0.802053	6.73E-49	-1.69E-46

Showing 1 to 2 of 2 entries

Previous1Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81578.t1	MTR_5g086130	94.083	507	30	0	1	507	114	620	0.0	995
MS.gene81578.t1	MTR_5g086130	93.886	507	29	1	1	507	114	618	0.0	988
MS.gene81578.t1	MTR_3g080050	65.354	508	169	4	2	507	119	621	0.0	641
MS.gene81578.t1	MTR_2g024290	63.938	513	174	4	2	507	108	616	0.0	624
MS.gene81578.t1	MTR_5g086030	61.404	513	185	6	2	507	132	638	0.0	617
MS.gene81578.t1	MTR_5g086120	60.239	503	168	7	1	488	114	599	0.0	584
MS.gene81578.t1	MTR_5g086040	58.447	515	182	8	2	507	99	590	0.0	538
MS.gene81578.t1	MTR_5g086090	56.040	505	186	9	2	488	114	600	0.0	532
MS.gene81578.t1	MTR_5g086540	56.566	495	156	10	7	488	117	565	0.0	528
MS.gene81578.t1	MTR_2g024290	62.911	426	147	4	2	420	108	529	1.17e-175	505

Showing 1 to 10 of 502 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81578.t1	AT3G21630	58.350	509	202	7	2	507	116	617	0.0	582
MS.gene81578.t1	AT1G51940	43.522	301	158	6	191	479	323	623	1.59e-78	258
MS.gene81578.t1	AT1G70460	40.557	323	185	4	162	479	306	626	2.20e-70	238
MS.gene81578.t1	AT5G38560	36.082	388	222	8	122	487	239	622	5.90e-70	236
MS.gene81578.t1	AT1G23540	41.026	312	169	5	187	493	349	650	2.67e-68	233
MS.gene81578.t1	AT1G68690	36.641	393	217	12	112	484	274	654	5.35e-68	232
MS.gene81578.t1	AT1G68690	36.641	393	217	12	112	484	274	654	5.35e-68	232
MS.gene81578.t1	AT1G68690	36.641	393	217	12	112	484	274	654	5.35e-68	232
MS.gene81578.t1	AT3G24540	36.412	379	201	6	114	487	121	464	6.25e-68	226
MS.gene81578.t1	AT1G10620	34.974	386	227	7	118	481	262	645	9.73e-68	231

Showing 1 to 10 of 500 entries

Previous1 2 3 4 5…50Next

Find 95 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAGATGTTTATGCTTT+TGG	0.162194	5.1:+68239110	MS.gene81578:CDS
AAAATTGGTCAAGGTGGATT+TGG	0.269763	5.1:+68237808	MS.gene81578:CDS
AACCAGATTTCAAAAGATTA+TGG	0.166485	5.1:+68236372	MS.gene81578:CDS
AACTTGGGTCAATATTTACA+TGG	0.530800	5.1:+68238458	MS.gene81578:CDS
AAGAATGCTGTCCTGAAGAC+AGG	0.570562	5.1:+68239161	MS.gene81578:CDS
AAGGCCAGCAGCACTACCAG+TGG	0.690070	5.1:-68237704	None:intergenic
AATCAGTCTAATCTTGATGA+AGG	0.454619	5.1:+68236447	MS.gene81578:CDS
AATTGCAGATGGCTCAACTT+GGG	0.541902	5.1:+68239754	MS.gene81578:intron
ACAACTATAGATCTCATGCT+TGG	0.498753	5.1:-68239810	None:intergenic
ACAATATAGGTGCGGTTGAT+TGG	0.395087	5.1:+68238383	MS.gene81578:intron

Showing 1 to 10 of 95 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AACTTGGGTCAATATTTACA+TGG	+	chr5.1:68238458-68238477	MS.gene81578:CDS	30.0%
AATCAGTCTAATCTTGATGA+AGG	+	chr5.1:68236447-68236466	MS.gene81578:CDS	30.0%
ACATATTGACAATGGAAACT+TGG	+	chr5.1:68238442-68238461	MS.gene81578:CDS	30.0%
ACCTATAATCTAAGTCACAA+TGG	-	chr5.1:68236688-68236707	None:intergenic	30.0%
ACTTAATACAAAGCATACTC+TGG	-	chr5.1:68238909-68238928	None:intergenic	30.0%
ATAAATTATTCTGCCAACTG+CGG	+	chr5.1:68236631-68236650	MS.gene81578:intron	30.0%
ATATTAGCAGGTCTTTCTAA+GGG	+	chr5.1:68237306-68237325	MS.gene81578:intron	30.0%
ATCAGTCTAATCTTGATGAA+GGG	+	chr5.1:68236448-68236467	MS.gene81578:CDS	30.0%
ATTTAGTATGTGTATGTCCA+TGG	+	chr5.1:68238988-68239007	MS.gene81578:intron	30.0%
CATATTGACAATGGAAACTT+GGG	+	chr5.1:68238443-68238462	MS.gene81578:CDS	30.0%

Showing 1 to 10 of 187 entries

Previous1 2 3 4 5…19Next

Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	68236243	68239926	68236243	ID=MS.gene81578
chr5.1	mRNA	68236243	68239926	68236243	ID=MS.gene81578.t1;Parent=MS.gene81578
chr5.1	exon	68236243	68236540	68236243	ID=MS.gene81578.t1.exon1;Parent=MS.gene81578.t1
chr5.1	CDS	68236243	68236540	68236243	ID=cds.MS.gene81578.t1;Parent=MS.gene81578.t1
chr5.1	exon	68237040	68237073	68237040	ID=MS.gene81578.t1.exon2;Parent=MS.gene81578.t1
chr5.1	CDS	68237040	68237073	68237040	ID=cds.MS.gene81578.t1;Parent=MS.gene81578.t1
chr5.1	exon	68237196	68237200	68237196	ID=MS.gene81578.t1.exon3;Parent=MS.gene81578.t1
chr5.1	CDS	68237196	68237200	68237196	ID=cds.MS.gene81578.t1;Parent=MS.gene81578.t1
chr5.1	exon	68237316	68237468	68237316	ID=MS.gene81578.t1.exon4;Parent=MS.gene81578.t1
chr5.1	CDS	68237316	68237468	68237316	ID=cds.MS.gene81578.t1;Parent=MS.gene81578.t1
chr5.1	exon	68237659	68237861	68237659	ID=MS.gene81578.t1.exon5;Parent=MS.gene81578.t1
chr5.1	CDS	68237659	68237861	68237659	ID=cds.MS.gene81578.t1;Parent=MS.gene81578.t1
chr5.1	exon	68238032	68238121	68238032	ID=MS.gene81578.t1.exon6;Parent=MS.gene81578.t1
chr5.1	CDS	68238032	68238121	68238032	ID=cds.MS.gene81578.t1;Parent=MS.gene81578.t1
chr5.1	exon	68238392	68238485	68238392	ID=MS.gene81578.t1.exon7;Parent=MS.gene81578.t1
chr5.1	CDS	68238392	68238485	68238392	ID=cds.MS.gene81578.t1;Parent=MS.gene81578.t1
chr5.1	exon	68238571	68238722	68238571	ID=MS.gene81578.t1.exon8;Parent=MS.gene81578.t1
chr5.1	CDS	68238571	68238722	68238571	ID=cds.MS.gene81578.t1;Parent=MS.gene81578.t1
chr5.1	exon	68238819	68238910	68238819	ID=MS.gene81578.t1.exon9;Parent=MS.gene81578.t1
chr5.1	CDS	68238819	68238910	68238819	ID=cds.MS.gene81578.t1;Parent=MS.gene81578.t1
chr5.1	exon	68239082	68239220	68239082	ID=MS.gene81578.t1.exon10;Parent=MS.gene81578.t1
chr5.1	CDS	68239082	68239220	68239082	ID=cds.MS.gene81578.t1;Parent=MS.gene81578.t1
chr5.1	exon	68239401	68239499	68239401	ID=MS.gene81578.t1.exon11;Parent=MS.gene81578.t1
chr5.1	CDS	68239401	68239499	68239401	ID=cds.MS.gene81578.t1;Parent=MS.gene81578.t1
chr5.1	exon	68239762	68239926	68239762	ID=MS.gene81578.t1.exon12;Parent=MS.gene81578.t1
chr5.1	CDS	68239762	68239926	68239762	ID=cds.MS.gene81578.t1;Parent=MS.gene81578.t1

Gene Sequence

>MS.gene81578

ATGATTTCCAATTCTTATTATGCAAGTTTGACTACAGTTGAGCTTTTGAAAAAGTTCAATAGTTATGATCCAGATCATATACCTGCTAAGGCTAAGGTTAATGTAACTGTCAATTGTTCTTGTGGGAACAACCAGATTTCAAAAGATTATGGGTTGTTTATTACGTATCCACTCAGGACTGATGATACTCTTCAGAAGATAGCAAATCAGTCTAATCTTGATGAAGGGTTGATACAGAGTTATAATTCTGGTGTCAATTTCAGCAAAGGAAGTGGGATAGTGTTCATTCCAGGAAGAGGTATGTATTTTCTCATTTTCTTCCATCACCTTTTGATAATATGATCAAAAGTATTTGGTATAAATATATGAATTACATTATCTTCAAAGAATAAATTATTCTGCCAACTGCGGTTGGCACAGATGGTTTGAACTTCCGTAACATCCATTGTGACTTAGATTATAGGTAAATTCCATTATAAATCTTTAATAAGATTTGGTGATTCTTATCAAAAGTACTTGTATAAGTATGCGAGTTAGATAAAAAAAATTATGACCATCTTGTTCTCTGGGAAATGGACTTTGATAATTCGTAAAGTTTAACTAATGATTGTTACGGCCAGGTTTTGAACTTGGTACTTCCAATTGACTTTACCTTCACCGAACATCACTGACCACTCGAGTCGAACCATTTAATTTCAGTTTAGAGTATATTTAAATGATGACTTACTCTATTATTTTTCAAAGTATATGCATGGTATAAATGTTGAAGTTTTATGTATTTATTTTTTACTTTGCAGATCAAAATGGACATTATTTTCCTTTGTATCCTAGGTAAGTAACATTGATTATCTCAATTTTCATTTTGGATGCTTTATAAAAGAAGTAAATATTGCTTCCTATAATTTGATTTAATTTTCTAACTTTCATTTTTTTTTTTTTTTCCCTTCTTGCAGAACAGGTTTGTCCTTTTGCTATTAAGATGATTATTTGTTAGCTTGTTCACAAAGATATGAGAATTAATGGACAAAAGGTCAATGCTTCCTGTGATCTTAAATTTGGTTCTATATTAGCAGGTCTTTCTAAGGGTTCAGCTGTTGGTATAGCTATGGCAGGAATATTTGGGCTTCTATTATTTGTTATCTATATATATGCCAGATACTTCCAAAAGAAGGAAGAAGAGAAAACTAAACTTCCAAAAACTTCTAGGGCATTTTCAACTCAAGATGGTAATATTTTTACACATTCATATTCTAAGTTCTTATTAAAAATATTTCTTTTAACCTATCTTATGATATAAGTACTTGTTCCAGTATTTGAGAGAGCTTGCGAAAATAGCTTATAACATGTTTGTAAAACGTTTTTTTATTTCATTAAATAGTTTATACTTGCTGATTTTTGTTTATGTTGTTGGTGAAGCCGCAGGTAGTGCAGAATATGAAACTTCAGGATCTAGTGGGCATGCCACTGGTAGTGCTGCTGGCCTTACAGGTATTATGGTGGCAAAGTCGACAGAGTTTTCATATCAAGAATTAGCCAAGGCTACAAATAATTTCAGCTTGGATAATAAAATTGGTCAAGGTGGATTTGGAGCTGTCTACTATGCAGAACTTAGAGGCGAGGTACCAAACGACATGAATTTGTTTGCTAGATTGTATTTTGGTTTTAGTTTTGAACAAGTTCTATAAAATATTTTCAAAAAACTGTTATTTTTTGTCAAAACTTGGAAAGAAAGATTTTTTTTTCTTCACGTTTTTCATTGATCTCCTCTCATGCAACTTACTGTACGCAGAAAACAGCAATTAAGAAGATGGATGTACAAGCATCGTCAGAATTTCTTTGTGAGTTGAAGGTCTTAACACATGTTCATCACTTGAATCTGGTATACCATCCTTTTAAACATCTTAAGCCATATATAATATATTTAGGAAATATAATCATTCATTTTTATATATGGTTCAAAGAATCATCATATAACTACAAAGCAAATAATCAGTGTTATTTTGAGAACATAACAACTCAATAACTATCGAGCAAACCATAATTTGTAGCTGTTGACAATTATCTGTTTGTACTTCATGATTTTGTATAACCAGTTTTGTGCGATCTAGATAACACTCTTAATTTACCTACGCGTGTATGAACAATATAGGTGCGGTTGATTGGATATTGCGTTGAAGGATCACTTTTCCTTGTATATGAACATATTGACAATGGAAACTTGGGTCAATATTTACATGGTATAGGTAAGATCAACAAAAATGTGCTAATATTTTTATGTGATTTTACAATATTGTCAAACAGTCACTAATGATGGTTACATGGTTTCAGGTACAGAACCATTACCATGGTCTAGTAGAGTGCAGATTGCTCTAGATTCAGCCAGAGGCCTTGAATACATTCATGAACACACTGTGCCTGTTTATATCCATCGCGACGTAAAATCAGCAAATATATTGATAGACAAAAACTTGCGTGGAAAGGTTACTTTTTGACCAATCTTAGTGTTCTGCATTGTAAATTATAATTTTTCATTTATTCTTTGAGATCAACTGAACTATGATTGGTTTTCAATTCAGGTTGCTGATTTTGGCTTGACCAAACTTATTGAAGTTGGAAACTCCACACTTCACACTCGTCTTGTGGGAACATTTGGATACATGCCACCAGAGTATGCTTTGTATTAAGTTTCGAGTTTATTAATCTCAAAACACGTTGTCACTTGAATATTAGCTTCTTTGAAAATTTATTTAGTATGTGTATGTCCATGGATTATAAACTATCTTCAACTTTCTTAATTGTAGAAAACATGTTTGTTTATTAGCTGTTTTTTTTTTTGCAGATATGCTCAATATGGCGATGTTTCTCCAAAAATAGATGTTTATGCTTTTGGAGTTGTTCTTTATGAACTTATTACTGCAAAGAATGCTGTCCTGAAGACAGGTGAATCTGTTGCTGAATCAAAGGGTCTTGTACAATTGGTAGGTCTAGATACCATTTTATCCAACCTAAACCATATTTATTAAGAAAACACTCATTTCATGTATATTTATAGTAAAATGTTATGCTAGTAATTAATTATGTACATTTTAAATTCAGTGAACTGAATGCATTCTCACTTAAACAGAACAAAAAGTATCCATAATTGTTTTGTATTGCAGTTTGAAGAAGCACTTCATCAAATGGATCCTTTAGAAGGTCTTCGAAAATTGGTGGATCCTAGGCTTAAAGAAAACTATCCCATTGATTCTGTTCTCAAGGTGGAAAGCATTTTTTTCTTAGCAAGAAATTGAATGTTATTTCTTTTTCTTCTCAATTTGCATTATATACCAACAAAAAAAAATGCATATTTATGTGGTATAGCCTTTCAAATCAATGTAGTACATAAGCAAAGTTCATGTTATTGAAATATAATTAAAATGTATGCAAAAGTGTATAGTTTTTAGAGTTATTAAACTCATTTTTTAGCACTAGATTTTGTCATTGAACATAACTTAAGATATGTGAATATTTGAATTGCAGATGGCTCAACTTGGGAGAGCATGTACGAGAGACAATCCGCTACTACGCCCAAGCATGAGATCTATAGTTGTTGCTCTTATGACACTTTCATCACCAACTGAAGATTGTGATGATGACTCTTCATATGAAAATCAATCTCTCATAAATCTGTTGTCAACTAGATGA

Protein sequence

>MS.gene81578.t1

MISNSYYASLTTVELLKKFNSYDPDHIPAKAKVNVTVNCSCGNNQISKDYGLFITYPLRTDDTLQKIANQSNLDEGLIQSYNSGVNFSKGSGIVFIPGRDQNGHYFPLYPRTGLSKGSAVGIAMAGIFGLLLFVIYIYARYFQKKEEEKTKLPKTSRAFSTQDAAGSAEYETSGSSGHATGSAAGLTGIMVAKSTEFSYQELAKATNNFSLDNKIGQGGFGAVYYAELRGEKTAIKKMDVQASSEFLCELKVLTHVHHLNLVRLIGYCVEGSLFLVYEHIDNGNLGQYLHGIGTEPLPWSSRVQIALDSARGLEYIHEHTVPVYIHRDVKSANILIDKNLRGKVADFGLTKLIEVGNSTLHTRLVGTFGYMPPEYAQYGDVSPKIDVYAFGVVLYELITAKNAVLKTGESVAESKGLVQLFEEALHQMDPLEGLRKLVDPRLKENYPIDSVLKMAQLGRACTRDNPLLRPSMRSIVVALMTLSSPTEDCDDDSSYENQSLINLLSTR