Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81616.t1 | XP_018459315.1 | 46 | 341 | 161 | 6 | 103 | 442 | 1 | 319 | 4.10E-66 | 262.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81616.t1 | A0A2N9I863 | 41.6 | 358 | 174 | 9 | 103 | 445 | 1 | 338 | 1.8e-63 | 253.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060253 | MS.gene81616 | 0.869438 | 3.10E-66 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81616.t1 | MTR_7g062720 | 40.541 | 148 | 80 | 3 | 103 | 248 | 1 | 142 | 6.76e-31 | 117 |
| MS.gene81616.t1 | MTR_4g037355 | 41.176 | 136 | 60 | 3 | 257 | 392 | 1 | 116 | 5.34e-22 | 92.0 |
| MS.gene81616.t1 | MTR_5g061150 | 33.333 | 111 | 74 | 0 | 142 | 252 | 26 | 136 | 4.64e-18 | 80.9 |
| MS.gene81616.t1 | MTR_4g112730 | 57.971 | 69 | 28 | 1 | 245 | 313 | 2 | 69 | 1.13e-17 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 79 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGATCAATGGAACAAATTA+AGG | 0.196151 | 5.1:-67502640 | MS.gene81616:CDS |
| AGTCTTATTGCCCTCATTAA+TGG | 0.201947 | 5.1:-67502660 | MS.gene81616:CDS |
| AAAGTTGTGGCGTTTATTTC+AGG | 0.203868 | 5.1:+67502344 | None:intergenic |
| CGCTCTCATCTCACTGTCTT+TGG | 0.227077 | 5.1:+67504803 | None:intergenic |
| GACAAAATTAAGGCAAGATT+TGG | 0.257188 | 5.1:-67502695 | MS.gene81616:CDS |
| CTACTGAAGCAGTGATTATA+AGG | 0.264237 | 5.1:-67504584 | MS.gene81616:CDS |
| GATTCTTGAGGGAGACGATT+TGG | 0.271296 | 5.1:-67502837 | MS.gene81616:CDS |
| CACGACCTCCACCACGAAAA+TGG | 0.277262 | 5.1:+67502228 | None:intergenic |
| GATATTGTAATGCCAATTCT+TGG | 0.288457 | 5.1:+67504777 | None:intergenic |
| AACACGTGGATTAACTAAAT+TGG | 0.290343 | 5.1:+67504740 | None:intergenic |
| TCAGTTCTATCATACTCTTT+TGG | 0.305953 | 5.1:+67504715 | None:intergenic |
| CATAGGAGAAGATATTAATA+TGG | 0.311554 | 5.1:-67501934 | MS.gene81616:CDS |
| ATTTACTGAATACTCTGATT+TGG | 0.313227 | 5.1:-67502450 | MS.gene81616:CDS |
| CTTGATGATTCTTGTTGGTT+TGG | 0.339105 | 5.1:+67502168 | None:intergenic |
| GAAGAGGTTATATGAATTAT+AGG | 0.339571 | 5.1:-67502205 | MS.gene81616:CDS |
| GGGAGATGTCCCAGAGGAAT+TGG | 0.345733 | 5.1:-67502816 | MS.gene81616:CDS |
| ATTCTTGAGGGAGACGATTT+GGG | 0.354692 | 5.1:-67502836 | MS.gene81616:CDS |
| CATAGCCACCACGTCCTCTT+TGG | 0.358116 | 5.1:+67502294 | None:intergenic |
| AAGACAGGTAGTATCATTCT+TGG | 0.359896 | 5.1:+67501971 | None:intergenic |
| TTTACCTTGATGATTCTTGT+TGG | 0.362649 | 5.1:+67502163 | None:intergenic |
| CTTGAGGCTGCTGATTTCAT+AGG | 0.363536 | 5.1:-67501951 | MS.gene81616:CDS |
| GATTTCTAGAGGGACCTTCC+TGG | 0.373636 | 5.1:+67502129 | None:intergenic |
| CGTGGTGGCTATGCTCGTTT+TGG | 0.395091 | 5.1:-67502284 | MS.gene81616:CDS |
| ATGAGAGCGATTCCAAGAAT+TGG | 0.411932 | 5.1:-67504789 | MS.gene81616:CDS |
| ACAAAATTAAGGCAAGATTT+GGG | 0.416566 | 5.1:-67502694 | MS.gene81616:CDS |
| TATAACTGAAAAGGAAAAGT+TGG | 0.422757 | 5.1:-67502537 | MS.gene81616:CDS |
| CTGGAGACAACTACATAACT+TGG | 0.428505 | 5.1:-67502904 | MS.gene81616:CDS |
| GCAGCATGTTTAGCTGTTCC+AGG | 0.429250 | 5.1:+67504606 | None:intergenic |
| TGCCCTCATTAATGGATCAA+TGG | 0.432677 | 5.1:-67502652 | MS.gene81616:CDS |
| AGATACAAAGAATCTGTTGA+TGG | 0.446469 | 5.1:-67502029 | MS.gene81616:CDS |
| CGTGGTGGAGGTCGTGGAAG+AGG | 0.449888 | 5.1:-67502221 | MS.gene81616:CDS |
| AGACAGGTAGTATCATTCTT+GGG | 0.454310 | 5.1:+67501972 | None:intergenic |
| CTAGCAGTAGTGTAAACTTC+CGG | 0.465720 | 5.1:+67504103 | None:intergenic |
| CTTGGAACATTGCATGGTAT+AGG | 0.466977 | 5.1:-67504653 | MS.gene81616:CDS |
| TGGCAAAACTATAACTGAAA+AGG | 0.467052 | 5.1:-67502546 | MS.gene81616:CDS |
| ATCTGTTGATGGAAAGGAAA+AGG | 0.477668 | 5.1:-67502018 | MS.gene81616:CDS |
| AACCACCAGTTGCGTCCTAC+AGG | 0.478404 | 5.1:-67502380 | MS.gene81616:CDS |
| TTGTTCCTGTAGGACGCAAC+TGG | 0.480977 | 5.1:+67502375 | None:intergenic |
| ATCAAGCACCACATTGATGA+TGG | 0.492315 | 5.1:-67502764 | MS.gene81616:CDS |
| TGCAACAACAATATAGAATG+AGG | 0.496917 | 5.1:-67502475 | MS.gene81616:CDS |
| AACAAGAATCATCAAGGTAA+AGG | 0.504207 | 5.1:-67502161 | MS.gene81616:CDS |
| GTTCCATTGATCCATTAATG+AGG | 0.509644 | 5.1:+67502649 | None:intergenic |
| CAAAGAATCTGTTGATGGAA+AGG | 0.510693 | 5.1:-67502024 | MS.gene81616:CDS |
| TGTTATAGATGCGGAAAGAA+AGG | 0.513070 | 5.1:-67502095 | MS.gene81616:CDS |
| TGATGAATATAATGAATGCT+TGG | 0.532814 | 5.1:-67504671 | MS.gene81616:CDS |
| TTCCATTGATCCATTAATGA+GGG | 0.533283 | 5.1:+67502650 | None:intergenic |
| GATGCGGAAAGAAAGGTCAT+TGG | 0.533423 | 5.1:-67502088 | MS.gene81616:CDS |
| GGACTCGACAAGATTCTTGA+GGG | 0.539594 | 5.1:-67502848 | MS.gene81616:CDS |
| TTGGTTTGGTCATATTTGAG+AGG | 0.544297 | 5.1:+67502182 | None:intergenic |
| TACTGAAGCAGTGATTATAA+GGG | 0.546627 | 5.1:-67504583 | MS.gene81616:CDS |
| CGTGGTCGAGGCAGAAGTCA+TGG | 0.554869 | 5.1:-67502257 | MS.gene81616:CDS |
| GAAATCAGCAGCCTCAAGAC+AGG | 0.558951 | 5.1:+67501956 | None:intergenic |
| AATTGAGTATCTTGCATGTG+AGG | 0.565013 | 5.1:-67502870 | MS.gene81616:CDS |
| ATCAGCACGATCGTTTCTAC+CGG | 0.569433 | 5.1:-67504122 | MS.gene81616:intron |
| CAAACCAACAAGAATCATCA+AGG | 0.574004 | 5.1:-67502167 | MS.gene81616:CDS |
| TTTGGTTACAGCTCTTCTAG+TGG | 0.574259 | 5.1:-67502432 | MS.gene81616:CDS |
| ATTGAGTATCTTGCATGTGA+GGG | 0.575966 | 5.1:-67502869 | MS.gene81616:CDS |
| GCTGTTCCAGGTGAAGCGGA+TGG | 0.577251 | 5.1:+67504618 | None:intergenic |
| GGATATGCCATTGTTCCTGT+AGG | 0.578642 | 5.1:+67502365 | None:intergenic |
| GCAACAACAATATAGAATGA+GGG | 0.579939 | 5.1:-67502474 | MS.gene81616:CDS |
| TTTAGCTGTTCCAGGTGAAG+CGG | 0.594637 | 5.1:+67504614 | None:intergenic |
| TTCCTGTAGGACGCAACTGG+TGG | 0.602401 | 5.1:+67502378 | None:intergenic |
| TATAATTGCCAAAGAGGACG+TGG | 0.606661 | 5.1:-67502302 | MS.gene81616:CDS |
| CGGAAGTTTACACTACTGCT+AGG | 0.607882 | 5.1:-67504102 | MS.gene81616:intron |
| ACGCCCTTGATTAAAAGTTG+TGG | 0.608515 | 5.1:+67502331 | None:intergenic |
| GCAATATCACTTGAGATGCA+TGG | 0.608661 | 5.1:+67502495 | None:intergenic |
| GGGACTCGACAAGATTCTTG+AGG | 0.610766 | 5.1:-67502849 | MS.gene81616:CDS |
| TGTTGATGGAAAGGAAAAGG+AGG | 0.612844 | 5.1:-67502015 | MS.gene81616:CDS |
| GGTGGTTATAATTGCCAAAG+AGG | 0.622793 | 5.1:-67502308 | MS.gene81616:CDS |
| TGAATGCTTGGAACATTGCA+TGG | 0.622806 | 5.1:-67504659 | MS.gene81616:CDS |
| ACGATCATCATGATTTCTAG+AGG | 0.627654 | 5.1:+67502118 | None:intergenic |
| GTCATTGGTCTAAAGCATGT+AGG | 0.629444 | 5.1:-67502073 | MS.gene81616:CDS |
| GATGATCGTTGTTATAGATG+CGG | 0.637106 | 5.1:-67502104 | MS.gene81616:CDS |
| GAATGATACTACCTGTCTTG+AGG | 0.637144 | 5.1:-67501967 | MS.gene81616:CDS |
| CGATCATCATGATTTCTAGA+GGG | 0.638172 | 5.1:+67502119 | None:intergenic |
| GTTGCGTCCTACAGGAACAA+TGG | 0.661047 | 5.1:-67502372 | MS.gene81616:CDS |
| AATTGCCAAAGAGGACGTGG+TGG | 0.696465 | 5.1:-67502299 | MS.gene81616:CDS |
| TTTGTAATCCATCATCAATG+TGG | 0.715751 | 5.1:+67502756 | None:intergenic |
| CGATTTGGGAGATGTCCCAG+AGG | 0.725435 | 5.1:-67502822 | MS.gene81616:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTATTATTATTATTATTA+TGG | - | chr5.1:67502802-67502821 | MS.gene81616:CDS | 0.0% |
| !! | AAAGTAAAAATTAGATTATA+TGG | + | chr5.1:67502893-67502912 | None:intergenic | 10.0% |
| !! | AAAGTAAAAATTATATTAGA+TGG | + | chr5.1:67503036-67503055 | None:intergenic | 10.0% |
| !! | AAGTAAAAATTAGATTATAT+GGG | + | chr5.1:67502892-67502911 | None:intergenic | 10.0% |
| !! | AAGTAAAAATTATATTAGAT+GGG | + | chr5.1:67503035-67503054 | None:intergenic | 10.0% |
| !! | ATTAAATATAAAAGTTAGAT+GGG | + | chr5.1:67503082-67503101 | None:intergenic | 10.0% |
| !! | TATTATTATTATTATTATGG+AGG | - | chr5.1:67502808-67502827 | MS.gene81616:CDS | 10.0% |
| !!! | TTATGTTTAAAATTTTGAAT+TGG | + | chr5.1:67503815-67503834 | None:intergenic | 10.0% |
| !! | AAAGTAAAAATTAGATTAGA+TGG | + | chr5.1:67502844-67502863 | None:intergenic | 15.0% |
| !! | AAGTAAAAATTAGATTAGAT+GGG | + | chr5.1:67502843-67502862 | None:intergenic | 15.0% |
| !! | AGAAATATCATTGTATTTAA+TGG | + | chr5.1:67503714-67503733 | None:intergenic | 15.0% |
| !! | AGTAAAAATTAGATTATATG+GGG | + | chr5.1:67502891-67502910 | None:intergenic | 15.0% |
| !! | AGTAAAAATTATATTAGATG+GGG | + | chr5.1:67503034-67503053 | None:intergenic | 15.0% |
| !! | ATGAATCAATATTATAAATG+GGG | + | chr5.1:67503117-67503136 | None:intergenic | 15.0% |
| !! | CATGAATCAATATTATAAAT+GGG | + | chr5.1:67503118-67503137 | None:intergenic | 15.0% |
| !! | CATTAAATATAAAAGTTAGA+TGG | + | chr5.1:67503083-67503102 | None:intergenic | 15.0% |
| !! | TCATGAATCAATATTATAAA+TGG | + | chr5.1:67503119-67503138 | None:intergenic | 15.0% |
| !! | TTAAATATAAAAGTTAGATG+GGG | + | chr5.1:67503081-67503100 | None:intergenic | 15.0% |
| !! | TTAATGAATAGTAAAATCAA+TGG | - | chr5.1:67503288-67503307 | MS.gene81616:intron | 15.0% |
| !!! | ATATTTTGATTTCTCAAAAA+TGG | + | chr5.1:67502479-67502498 | None:intergenic | 15.0% |
| !!! | CATCTAACTTTTATATTTAA+TGG | - | chr5.1:67503081-67503100 | MS.gene81616:intron | 15.0% |
| !!! | TTCAAAATTTTAAACATAAC+TGG | - | chr5.1:67503816-67503835 | MS.gene81616:intron | 15.0% |
| !! | AGTAAAAATTAGATTAGATG+GGG | + | chr5.1:67502842-67502861 | None:intergenic | 20.0% |
| !! | GATGTAAAAATTATGAATGA+AGG | + | chr5.1:67503461-67503480 | None:intergenic | 20.0% |
| !! | GTAAAAATTAGATTATATGG+GGG | + | chr5.1:67502890-67502909 | None:intergenic | 20.0% |
| !! | GTTTAAATATCATCTAAGTT+AGG | + | chr5.1:67503239-67503258 | None:intergenic | 20.0% |
| !!! | ATTTTACTATTCATTAACGT+TGG | + | chr5.1:67503285-67503304 | None:intergenic | 20.0% |
| !!! | ATTTTTACTTTCATGCTTAA+TGG | - | chr5.1:67502853-67502872 | MS.gene81616:CDS | 20.0% |
| !!! | CCAAGTATTTTTATGAAAAA+AGG | + | chr5.1:67502232-67502251 | None:intergenic | 20.0% |
| !!! | CCTTTTTTCATAAAAATACT+TGG | - | chr5.1:67502229-67502248 | MS.gene81616:CDS | 20.0% |
| !!! | CTAACTTTTATATTTAATGG+AGG | - | chr5.1:67503084-67503103 | MS.gene81616:intron | 20.0% |
| !!! | TTTTCCTAATTCTTCAATAT+GGG | + | chr5.1:67503574-67503593 | None:intergenic | 20.0% |
| !!! | TTTTTCATAAAAATACTTGG+TGG | - | chr5.1:67502232-67502251 | MS.gene81616:CDS | 20.0% |
| ! | AAATCACAAGACAACATATA+TGG | + | chr5.1:67503198-67503217 | None:intergenic | 25.0% |
| ! | AATATTATTATTATCTGCCC+CGG | - | chr5.1:67502733-67502752 | MS.gene81616:CDS | 25.0% |
| ! | ACAAAATTAAGGCAAGATTT+GGG | - | chr5.1:67504045-67504064 | MS.gene81616:intron | 25.0% |
| ! | ACTATTGAAAGTTGACAATT+TGG | + | chr5.1:67502332-67502351 | None:intergenic | 25.0% |
| ! | ATTTACCCATACTTACAAAA+TGG | - | chr5.1:67503488-67503507 | MS.gene81616:intron | 25.0% |
| ! | ATTTACTGAATACTCTGATT+TGG | - | chr5.1:67504289-67504308 | MS.gene81616:intron | 25.0% |
| ! | CATAGGAGAAGATATTAATA+TGG | - | chr5.1:67504805-67504824 | MS.gene81616:CDS | 25.0% |
| ! | GAAGAGGTTATATGAATTAT+AGG | - | chr5.1:67504534-67504553 | MS.gene81616:intron | 25.0% |
| ! | TAATTTCACACATGTAATAG+TGG | - | chr5.1:67502406-67502425 | MS.gene81616:CDS | 25.0% |
| ! | TATAACTGAAAAGGAAAAGT+TGG | - | chr5.1:67504202-67504221 | MS.gene81616:intron | 25.0% |
| ! | TGATGAATATAATGAATGCT+TGG | - | chr5.1:67502068-67502087 | MS.gene81616:CDS | 25.0% |
| ! | TTCTAATTTGACATTTACCT+AGG | + | chr5.1:67502374-67502393 | None:intergenic | 25.0% |
| !! | AAAAGATCCCAAGATTTTAT+GGG | - | chr5.1:67504022-67504041 | MS.gene81616:intron | 25.0% |
| !! | AATTTTGTCCCATAAAATCT+TGG | + | chr5.1:67504033-67504052 | None:intergenic | 25.0% |
| !! | ATTCTTTGTATCTTTTACAC+AGG | + | chr5.1:67504703-67504722 | None:intergenic | 25.0% |
| !! | ATTGCACAATTAGAATTTTG+TGG | - | chr5.1:67504173-67504192 | MS.gene81616:intron | 25.0% |
| !! | ATTTTGTCCCATAAAATCTT+GGG | + | chr5.1:67504032-67504051 | None:intergenic | 25.0% |
| !! | CTTTTCCTAATTCTTCAATA+TGG | + | chr5.1:67503575-67503594 | None:intergenic | 25.0% |
| !! | GAATTAGGAAAAGATTTTGT+AGG | - | chr5.1:67503582-67503601 | MS.gene81616:intron | 25.0% |
| !! | GATTTTATGGGACAAAATTA+AGG | - | chr5.1:67504034-67504053 | MS.gene81616:intron | 25.0% |
| !!! | CAACAACAGTTTTATAATCT+TGG | + | chr5.1:67504127-67504146 | None:intergenic | 25.0% |
| !!! | TTTAGCCATTTTGTAAGTAT+GGG | + | chr5.1:67503496-67503515 | None:intergenic | 25.0% |
| !!! | TTTTAGCCATTTTGTAAGTA+TGG | + | chr5.1:67503497-67503516 | None:intergenic | 25.0% |
| AAATCAAGAGAGAAAGAAGT+AGG | + | chr5.1:67502507-67502526 | None:intergenic | 30.0% | |
| AACAAGAATCATCAAGGTAA+AGG | - | chr5.1:67504578-67504597 | MS.gene81616:CDS | 30.0% | |
| ACACAAGCTAAGACTAATAA+TGG | + | chr5.1:67503630-67503649 | None:intergenic | 30.0% | |
| AGATACAAAGAATCTGTTGA+TGG | - | chr5.1:67504710-67504729 | MS.gene81616:CDS | 30.0% | |
| CAAGTGATTTATAACTAGAG+TGG | - | chr5.1:67502778-67502797 | MS.gene81616:CDS | 30.0% | |
| GACAAAATTAAGGCAAGATT+TGG | - | chr5.1:67504044-67504063 | MS.gene81616:intron | 30.0% | |
| GATATTGTAATGCCAATTCT+TGG | + | chr5.1:67501965-67501984 | None:intergenic | 30.0% | |
| GCAACAACAATATAGAATGA+GGG | - | chr5.1:67504265-67504284 | MS.gene81616:intron | 30.0% | |
| GCTATGAACAGTGTATTTAA+CGG | - | chr5.1:67503389-67503408 | MS.gene81616:intron | 30.0% | |
| GTAGTATAAATACCACACTT+TGG | - | chr5.1:67502437-67502456 | MS.gene81616:CDS | 30.0% | |
| GTATTTAACGGTAACAGTAA+CGG | - | chr5.1:67503401-67503420 | MS.gene81616:intron | 30.0% | |
| GTGATAATTACCTATTACCT+AGG | - | chr5.1:67502354-67502373 | MS.gene81616:CDS | 30.0% | |
| TACTGAAGCAGTGATTATAA+GGG | - | chr5.1:67502156-67502175 | MS.gene81616:CDS | 30.0% | |
| TGCAACAACAATATAGAATG+AGG | - | chr5.1:67504264-67504283 | MS.gene81616:intron | 30.0% | |
| TGGATCAATGGAACAAATTA+AGG | - | chr5.1:67504099-67504118 | MS.gene81616:intron | 30.0% | |
| TGGCAAAACTATAACTGAAA+AGG | - | chr5.1:67504193-67504212 | MS.gene81616:intron | 30.0% | |
| TTCACCCATATTGAAGAATT+AGG | - | chr5.1:67503567-67503586 | MS.gene81616:intron | 30.0% | |
| TTCCATTGATCCATTAATGA+GGG | + | chr5.1:67504092-67504111 | None:intergenic | 30.0% | |
| TTGACATTTACCTAGGTAAT+AGG | + | chr5.1:67502367-67502386 | None:intergenic | 30.0% | |
| TTTACTTTCATGCTTAATGG+AGG | - | chr5.1:67502856-67502875 | MS.gene81616:CDS | 30.0% | |
| TTTGTAATCCATCATCAATG+TGG | + | chr5.1:67503986-67504005 | None:intergenic | 30.0% | |
| ! | AACACGTGGATTAACTAAAT+TGG | + | chr5.1:67502002-67502021 | None:intergenic | 30.0% |
| ! | ATTGCCAATTTTCTATAACC+GGG | + | chr5.1:67502754-67502773 | None:intergenic | 30.0% |
| ! | CAAAAGATCCCAAGATTTTA+TGG | - | chr5.1:67504021-67504040 | MS.gene81616:intron | 30.0% |
| ! | GATTGCCAATTTTCTATAAC+CGG | + | chr5.1:67502755-67502774 | None:intergenic | 30.0% |
| ! | TCAGTTCTATCATACTCTTT+TGG | + | chr5.1:67502027-67502046 | None:intergenic | 30.0% |
| ! | TTTACCTTGATGATTCTTGT+TGG | + | chr5.1:67504579-67504598 | None:intergenic | 30.0% |
| ! | TTTTTACATGAACCAAAGTG+TGG | + | chr5.1:67502452-67502471 | None:intergenic | 30.0% |
| !!! | ATTACTTTTTGTTTTCGTGG+AGG | - | chr5.1:67503651-67503670 | MS.gene81616:intron | 30.0% |
| !!! | GTGATTACTTTTTGTTTTCG+TGG | - | chr5.1:67503648-67503667 | MS.gene81616:intron | 30.0% |
| AAAGGTAAAAACATCCAGGA+AGG | - | chr5.1:67504596-67504615 | MS.gene81616:CDS | 35.0% | |
| AAAGTTGTGGCGTTTATTTC+AGG | + | chr5.1:67504398-67504417 | None:intergenic | 35.0% | |
| AAGACAGGTAGTATCATTCT+TGG | + | chr5.1:67504771-67504790 | None:intergenic | 35.0% | |
| AATTGAGTATCTTGCATGTG+AGG | - | chr5.1:67503869-67503888 | MS.gene81616:intron | 35.0% | |
| AGACAGGTAGTATCATTCTT+GGG | + | chr5.1:67504770-67504789 | None:intergenic | 35.0% | |
| AGGTAAAGGTAAAAACATCC+AGG | - | chr5.1:67504592-67504611 | MS.gene81616:CDS | 35.0% | |
| ATTGAGTATCTTGCATGTGA+GGG | - | chr5.1:67503870-67503889 | MS.gene81616:intron | 35.0% | |
| ATTTCAACGGTCATGAACAA+CGG | - | chr5.1:67503323-67503342 | MS.gene81616:intron | 35.0% | |
| CAAACCAACAAGAATCATCA+AGG | - | chr5.1:67504572-67504591 | MS.gene81616:CDS | 35.0% | |
| CTACTGAAGCAGTGATTATA+AGG | - | chr5.1:67502155-67502174 | MS.gene81616:CDS | 35.0% | |
| GATGATCGTTGTTATAGATG+CGG | - | chr5.1:67504635-67504654 | MS.gene81616:CDS | 35.0% | |
| GTAGAGTGATGCATAGTAAA+AGG | + | chr5.1:67503521-67503540 | None:intergenic | 35.0% | |
| GTCATGAACAGTGAAATCAA+CGG | - | chr5.1:67503345-67503364 | MS.gene81616:intron | 35.0% | |
| GTCATGAACAGTGATTTCAA+CGG | - | chr5.1:67503310-67503329 | MS.gene81616:intron | 35.0% | |
| GTTCCATTGATCCATTAATG+AGG | + | chr5.1:67504093-67504112 | None:intergenic | 35.0% | |
| TGTTATAGATGCGGAAAGAA+AGG | - | chr5.1:67504644-67504663 | MS.gene81616:CDS | 35.0% | |
| ! | AACGCCACAACTTTTAATCA+AGG | - | chr5.1:67504404-67504423 | MS.gene81616:intron | 35.0% |
| ! | ACGATCATCATGATTTCTAG+AGG | + | chr5.1:67504624-67504643 | None:intergenic | 35.0% |
| ! | ACGCCACAACTTTTAATCAA+GGG | - | chr5.1:67504405-67504424 | MS.gene81616:intron | 35.0% |
| ! | ATCTGTTGATGGAAAGGAAA+AGG | - | chr5.1:67504721-67504740 | MS.gene81616:CDS | 35.0% |
| ! | CAAAGAATCTGTTGATGGAA+AGG | - | chr5.1:67504715-67504734 | MS.gene81616:CDS | 35.0% |
| ! | CGATCATCATGATTTCTAGA+GGG | + | chr5.1:67504623-67504642 | None:intergenic | 35.0% |
| ! | CTTGATGATTCTTGTTGGTT+TGG | + | chr5.1:67504574-67504593 | None:intergenic | 35.0% |
| ! | TATCTTTTACACAGGTACTC+TGG | + | chr5.1:67504695-67504714 | None:intergenic | 35.0% |
| ! | TTGCCAATTTTCTATAACCG+GGG | + | chr5.1:67502753-67502772 | None:intergenic | 35.0% |
| ! | TTTTCTTTGCCAATTCCTCT+GGG | + | chr5.1:67503935-67503954 | None:intergenic | 35.0% |
| ! | TTTTTCTTTGCCAATTCCTC+TGG | + | chr5.1:67503936-67503955 | None:intergenic | 35.0% |
| !! | AGTCTTATTGCCCTCATTAA+TGG | - | chr5.1:67504079-67504098 | MS.gene81616:intron | 35.0% |
| !! | TTGGTTTGGTCATATTTGAG+AGG | + | chr5.1:67504560-67504579 | None:intergenic | 35.0% |
| ACGCCCTTGATTAAAAGTTG+TGG | + | chr5.1:67504411-67504430 | None:intergenic | 40.0% | |
| ACTATGCATCACTCTACTTG+TGG | - | chr5.1:67503524-67503543 | MS.gene81616:intron | 40.0% | |
| ATCAAGCACCACATTGATGA+TGG | - | chr5.1:67503975-67503994 | MS.gene81616:intron | 40.0% | |
| ATGAGAGCGATTCCAAGAAT+TGG | - | chr5.1:67501950-67501969 | MS.gene81616:CDS | 40.0% | |
| ATTCTTGAGGGAGACGATTT+GGG | - | chr5.1:67503903-67503922 | MS.gene81616:intron | 40.0% | |
| CTAGCAGTAGTGTAAACTTC+CGG | + | chr5.1:67502639-67502658 | None:intergenic | 40.0% | |
| CTGGAGACAACTACATAACT+TGG | - | chr5.1:67503835-67503854 | MS.gene81616:intron | 40.0% | |
| CTTGGAACATTGCATGGTAT+AGG | - | chr5.1:67502086-67502105 | MS.gene81616:CDS | 40.0% | |
| GAATGATACTACCTGTCTTG+AGG | - | chr5.1:67504772-67504791 | MS.gene81616:CDS | 40.0% | |
| GCAATATCACTTGAGATGCA+TGG | + | chr5.1:67504247-67504266 | None:intergenic | 40.0% | |
| GGTGGTTATAATTGCCAAAG+AGG | - | chr5.1:67504431-67504450 | MS.gene81616:intron | 40.0% | |
| TATAATTGCCAAAGAGGACG+TGG | - | chr5.1:67504437-67504456 | MS.gene81616:intron | 40.0% | |
| TGAATGCTTGGAACATTGCA+TGG | - | chr5.1:67502080-67502099 | MS.gene81616:CDS | 40.0% | |
| TTTGGTTACAGCTCTTCTAG+TGG | - | chr5.1:67504307-67504326 | MS.gene81616:intron | 40.0% | |
| ! | ACAACTTTTAATCAAGGGCG+TGG | - | chr5.1:67504410-67504429 | MS.gene81616:intron | 40.0% |
| ! | ATACTCTTTTGGACAACACG+TGG | + | chr5.1:67502016-67502035 | None:intergenic | 40.0% |
| ! | GTCATTGGTCTAAAGCATGT+AGG | - | chr5.1:67504666-67504685 | MS.gene81616:CDS | 40.0% |
| ! | TGCCCTCATTAATGGATCAA+TGG | - | chr5.1:67504087-67504106 | MS.gene81616:intron | 40.0% |
| ! | TGTTGATGGAAAGGAAAAGG+AGG | - | chr5.1:67504724-67504743 | MS.gene81616:CDS | 40.0% |
| ACGAGCACACATATAGAGAC+AGG | + | chr5.1:67502207-67502226 | None:intergenic | 45.0% | |
| ATCAGCACGATCGTTTCTAC+CGG | - | chr5.1:67502617-67502636 | MS.gene81616:CDS | 45.0% | |
| CGAGCACACATATAGAGACA+GGG | + | chr5.1:67502206-67502225 | None:intergenic | 45.0% | |
| CGGAAGTTTACACTACTGCT+AGG | - | chr5.1:67502637-67502656 | MS.gene81616:CDS | 45.0% | |
| CTGCCCCGGTTATAGAAAAT+TGG | - | chr5.1:67502747-67502766 | MS.gene81616:CDS | 45.0% | |
| GATGCGGAAAGAAAGGTCAT+TGG | - | chr5.1:67504651-67504670 | MS.gene81616:CDS | 45.0% | |
| GATTCTTGAGGGAGACGATT+TGG | - | chr5.1:67503902-67503921 | MS.gene81616:intron | 45.0% | |
| GGACTCGACAAGATTCTTGA+GGG | - | chr5.1:67503891-67503910 | MS.gene81616:intron | 45.0% | |
| GGATATGCCATTGTTCCTGT+AGG | + | chr5.1:67504377-67504396 | None:intergenic | 45.0% | |
| TTTAGCTGTTCCAGGTGAAG+CGG | + | chr5.1:67502128-67502147 | None:intergenic | 45.0% | |
| ! | CATGGTCGAAACCATTTTCG+TGG | - | chr5.1:67504500-67504519 | MS.gene81616:intron | 45.0% |
| !! | ACTTTTAATCAAGGGCGTGG+TGG | - | chr5.1:67504413-67504432 | MS.gene81616:intron | 45.0% |
| !! | CTTGAGGCTGCTGATTTCAT+AGG | - | chr5.1:67504788-67504807 | MS.gene81616:CDS | 45.0% |
| AATTGCCAAAGAGGACGTGG+TGG | - | chr5.1:67504440-67504459 | MS.gene81616:intron | 50.0% | |
| CAGGGTAGAGACACTCACAT+TGG | + | chr5.1:67502188-67502207 | None:intergenic | 50.0% | |
| CGCTCTCATCTCACTGTCTT+TGG | + | chr5.1:67501939-67501958 | None:intergenic | 50.0% | |
| GAAATCAGCAGCCTCAAGAC+AGG | + | chr5.1:67504786-67504805 | None:intergenic | 50.0% | |
| GCAGCATGTTTAGCTGTTCC+AGG | + | chr5.1:67502136-67502155 | None:intergenic | 50.0% | |
| GGGACTCGACAAGATTCTTG+AGG | - | chr5.1:67503890-67503909 | MS.gene81616:intron | 50.0% | |
| GTTGCGTCCTACAGGAACAA+TGG | - | chr5.1:67504367-67504386 | MS.gene81616:intron | 50.0% | |
| TTGTTCCTGTAGGACGCAAC+TGG | + | chr5.1:67504367-67504386 | None:intergenic | 50.0% | |
| ! | CGAAACCATTTTCGTGGTGG+AGG | - | chr5.1:67504506-67504525 | MS.gene81616:intron | 50.0% |
| ! | GATTTCTAGAGGGACCTTCC+TGG | + | chr5.1:67504613-67504632 | None:intergenic | 50.0% |
| ! | GGTCGAAACCATTTTCGTGG+TGG | - | chr5.1:67504503-67504522 | MS.gene81616:intron | 50.0% |
| !! | TATGCTCGTTTTGGTGGTCG+TGG | - | chr5.1:67504464-67504483 | MS.gene81616:intron | 50.0% |
| AACCACCAGTTGCGTCCTAC+AGG | - | chr5.1:67504359-67504378 | MS.gene81616:intron | 55.0% | |
| CACGACCTCCACCACGAAAA+TGG | + | chr5.1:67504514-67504533 | None:intergenic | 55.0% | |
| CATAGCCACCACGTCCTCTT+TGG | + | chr5.1:67504448-67504467 | None:intergenic | 55.0% | |
| GGGAGATGTCCCAGAGGAAT+TGG | - | chr5.1:67503923-67503942 | MS.gene81616:intron | 55.0% | |
| TTCCTGTAGGACGCAACTGG+TGG | + | chr5.1:67504364-67504383 | None:intergenic | 55.0% | |
| ! | CGATTTGGGAGATGTCCCAG+AGG | - | chr5.1:67503917-67503936 | MS.gene81616:intron | 55.0% |
| ! | CGTGGTGGCTATGCTCGTTT+TGG | - | chr5.1:67504455-67504474 | MS.gene81616:intron | 55.0% |
| ! | GCTTTTCCATCCGCTTCACC+TGG | - | chr5.1:67502115-67502134 | MS.gene81616:CDS | 55.0% |
| ! | GGTGGCTATGCTCGTTTTGG+TGG | - | chr5.1:67504458-67504477 | MS.gene81616:intron | 55.0% |
| !! | CATTTTCGTGGTGGAGGTCG+TGG | - | chr5.1:67504512-67504531 | MS.gene81616:intron | 55.0% |
| CGTGGTCGAGGCAGAAGTCA+TGG | - | chr5.1:67504482-67504501 | MS.gene81616:intron | 60.0% | |
| GCTGTTCCAGGTGAAGCGGA+TGG | + | chr5.1:67502124-67502143 | None:intergenic | 60.0% | |
| !! | CGTTTTGGTGGTCGTGGTCG+AGG | - | chr5.1:67504470-67504489 | MS.gene81616:intron | 60.0% |
| ! | CGTGGTGGAGGTCGTGGAAG+AGG | - | chr5.1:67504518-67504537 | MS.gene81616:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 67501929 | 67504832 | 67501929 | ID=MS.gene81616 |
| chr5.1 | mRNA | 67501929 | 67504832 | 67501929 | ID=MS.gene81616.t1;Parent=MS.gene81616 |
| chr5.1 | exon | 67504572 | 67504832 | 67504572 | ID=MS.gene81616.t1.exon1;Parent=MS.gene81616.t1 |
| chr5.1 | CDS | 67504572 | 67504832 | 67504572 | ID=cds.MS.gene81616.t1;Parent=MS.gene81616.t1 |
| chr5.1 | exon | 67504103 | 67504139 | 67504103 | ID=MS.gene81616.t1.exon2;Parent=MS.gene81616.t1 |
| chr5.1 | CDS | 67504103 | 67504139 | 67504103 | ID=cds.MS.gene81616.t1;Parent=MS.gene81616.t1 |
| chr5.1 | exon | 67501929 | 67502974 | 67501929 | ID=MS.gene81616.t1.exon3;Parent=MS.gene81616.t1 |
| chr5.1 | CDS | 67501929 | 67502974 | 67501929 | ID=cds.MS.gene81616.t1;Parent=MS.gene81616.t1 |
| Gene Sequence |
| Protein sequence |
