Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81684.t1 | XP_003606488.1 | 97.2 | 109 | 3 | 0 | 121 | 229 | 162 | 270 | 2.60E-57 | 232.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81684.t1 | P30707 | 97.7 | 87 | 2 | 0 | 18 | 104 | 79 | 165 | 1.5e-40 | 167.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81684.t1 | G7JRG3 | 97.2 | 109 | 3 | 0 | 121 | 229 | 162 | 270 | 1.9e-57 | 232.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene060429 | MS.gene81684 | 0.827089 | 1.90E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81684.t1 | MTR_4g060900 | 97.248 | 109 | 3 | 0 | 121 | 229 | 162 | 270 | 2.52e-73 | 232 |
MS.gene81684.t1 | MTR_3g093110 | 98.851 | 87 | 1 | 0 | 18 | 104 | 79 | 165 | 1.33e-54 | 174 |
MS.gene81684.t1 | MTR_5g068780 | 86.207 | 87 | 12 | 0 | 18 | 104 | 79 | 165 | 6.91e-49 | 160 |
MS.gene81684.t1 | MTR_7g100780 | 64.815 | 108 | 37 | 1 | 121 | 227 | 194 | 301 | 6.77e-45 | 158 |
MS.gene81684.t1 | MTR_2g086300 | 43.925 | 107 | 55 | 2 | 127 | 228 | 92 | 198 | 2.73e-21 | 92.0 |
MS.gene81684.t1 | MTR_3g104770 | 41.026 | 117 | 60 | 5 | 119 | 227 | 166 | 281 | 5.66e-21 | 91.7 |
MS.gene81684.t1 | MTR_1g060130 | 46.512 | 86 | 45 | 1 | 129 | 213 | 121 | 206 | 2.09e-20 | 89.7 |
MS.gene81684.t1 | MTR_4g053620 | 50.000 | 82 | 40 | 1 | 129 | 209 | 92 | 173 | 3.19e-20 | 89.0 |
MS.gene81684.t1 | MTR_2g086290 | 42.000 | 100 | 57 | 1 | 125 | 223 | 82 | 181 | 1.13e-18 | 84.3 |
MS.gene81684.t1 | MTR_1g050458 | 44.578 | 83 | 45 | 1 | 128 | 209 | 88 | 170 | 1.77e-18 | 83.6 |
MS.gene81684.t1 | MTR_1g050458 | 44.578 | 83 | 45 | 1 | 128 | 209 | 88 | 170 | 3.06e-18 | 83.2 |
MS.gene81684.t1 | MTR_1g060150 | 39.000 | 100 | 60 | 1 | 129 | 227 | 121 | 220 | 3.88e-18 | 83.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81684.t1 | AT1G33140 | 88.506 | 87 | 10 | 0 | 18 | 104 | 80 | 166 | 2.36e-49 | 161 |
MS.gene81684.t1 | AT1G33120 | 88.506 | 87 | 10 | 0 | 18 | 104 | 80 | 166 | 2.36e-49 | 161 |
MS.gene81684.t1 | AT4G10450 | 79.167 | 96 | 20 | 0 | 18 | 113 | 80 | 175 | 2.72e-48 | 158 |
MS.gene81684.t1 | AT3G09690 | 66.364 | 110 | 36 | 1 | 121 | 229 | 203 | 312 | 9.46e-47 | 163 |
MS.gene81684.t1 | AT3G09690 | 66.364 | 110 | 36 | 1 | 121 | 229 | 203 | 312 | 9.46e-47 | 163 |
MS.gene81684.t1 | AT4G10450 | 83.908 | 87 | 14 | 0 | 18 | 104 | 80 | 166 | 1.69e-46 | 154 |
MS.gene81684.t1 | AT5G02970 | 59.259 | 108 | 43 | 1 | 121 | 227 | 200 | 307 | 2.83e-41 | 148 |
MS.gene81684.t1 | AT3G54240 | 40.187 | 107 | 63 | 1 | 125 | 230 | 89 | 195 | 8.81e-23 | 95.9 |
MS.gene81684.t1 | AT3G44510 | 44.444 | 117 | 57 | 4 | 125 | 233 | 49 | 165 | 1.25e-22 | 93.2 |
MS.gene81684.t1 | AT2G36290 | 38.686 | 137 | 61 | 4 | 74 | 209 | 58 | 172 | 5.84e-22 | 93.6 |
MS.gene81684.t1 | AT2G36290 | 38.971 | 136 | 60 | 4 | 75 | 209 | 73 | 186 | 7.07e-22 | 93.6 |
MS.gene81684.t1 | AT3G44510 | 44.444 | 117 | 57 | 4 | 125 | 233 | 49 | 165 | 1.75e-21 | 92.0 |
MS.gene81684.t1 | AT1G74280 | 48.810 | 84 | 42 | 1 | 129 | 211 | 109 | 192 | 4.20e-21 | 91.7 |
MS.gene81684.t1 | AT1G74300 | 47.619 | 84 | 43 | 1 | 129 | 211 | 92 | 175 | 1.89e-19 | 86.7 |
MS.gene81684.t1 | AT5G22460 | 44.186 | 86 | 47 | 1 | 125 | 209 | 82 | 167 | 3.76e-18 | 82.8 |
MS.gene81684.t1 | AT5G22460 | 44.186 | 86 | 47 | 1 | 125 | 209 | 82 | 167 | 3.76e-18 | 82.8 |
MS.gene81684.t1 | AT5G22460 | 44.186 | 86 | 47 | 1 | 125 | 209 | 82 | 167 | 3.76e-18 | 82.8 |
MS.gene81684.t1 | AT3G48410 | 46.988 | 83 | 43 | 1 | 128 | 209 | 119 | 201 | 6.74e-18 | 82.4 |
MS.gene81684.t1 | AT3G48410 | 46.988 | 83 | 43 | 1 | 128 | 209 | 161 | 243 | 7.11e-18 | 82.8 |
MS.gene81684.t1 | AT1G74290 | 46.512 | 86 | 43 | 2 | 129 | 211 | 109 | 194 | 1.40e-17 | 81.6 |
MS.gene81684.t1 | AT1G74300 | 48.684 | 76 | 38 | 1 | 137 | 211 | 1 | 76 | 3.25e-17 | 79.0 |
MS.gene81684.t1 | AT1G08310 | 47.561 | 82 | 42 | 1 | 129 | 209 | 55 | 136 | 7.87e-16 | 76.3 |
MS.gene81684.t1 | AT1G08310 | 46.429 | 84 | 44 | 1 | 127 | 209 | 56 | 139 | 8.49e-16 | 75.9 |
MS.gene81684.t1 | AT1G08310 | 47.561 | 82 | 42 | 1 | 129 | 209 | 55 | 136 | 8.79e-16 | 75.1 |
MS.gene81684.t1 | AT3G03230 | 39.535 | 86 | 51 | 1 | 125 | 209 | 78 | 163 | 6.31e-15 | 73.6 |
MS.gene81684.t1 | AT3G03240 | 37.209 | 86 | 53 | 1 | 125 | 209 | 78 | 163 | 1.78e-14 | 72.4 |
Find 56 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGAATTTGTGTTTGAAATT+AGG | 0.133308 | 5.1:+66540907 | MS.gene81684:CDS |
CTCTTGGTGTTGACAAGTTT+TGG | 0.207857 | 5.1:+66541073 | MS.gene81684:CDS |
ATTGAGATCCGAAACTTTCT+TGG | 0.238218 | 5.1:+66540226 | MS.gene81684:CDS |
ACTTATGATCTGCCTGGTTT+TGG | 0.280877 | 5.1:+66540982 | MS.gene81684:CDS |
GGTGAAGGATGAGGTTGTTT+TGG | 0.319250 | 5.1:+66540681 | MS.gene81684:CDS |
ATGACATTGAGCTTGTTTCT+AGG | 0.326351 | 5.1:+66540710 | MS.gene81684:CDS |
TTAATACCTGCAAGTCTATC+AGG | 0.327430 | 5.1:-66541150 | None:intergenic |
TGACGATTCCTGATTTCGTT+TGG | 0.329045 | 5.1:-66541022 | None:intergenic |
TGTTCGCGTCCATTTGTTCC+AGG | 0.333418 | 5.1:-66541741 | None:intergenic |
TATTGATGTTCTCTTGTTCA+TGG | 0.337176 | 5.1:+66541786 | MS.gene81684:CDS |
TACATACCTGATAGACTTGC+AGG | 0.361619 | 5.1:+66541144 | MS.gene81684:CDS |
TCTTCTCTCCAAGAAAGTTT+CGG | 0.365793 | 5.1:-66540234 | None:intergenic |
TCCTCATCCCAAACGAAATC+AGG | 0.381690 | 5.1:+66541014 | MS.gene81684:CDS |
GACGATTCCTGATTTCGTTT+GGG | 0.384317 | 5.1:-66541021 | None:intergenic |
TTTGTCATCAAAGGATCATA+TGG | 0.395653 | 5.1:-66541701 | None:intergenic |
CTCAATCGACTTGTTGTCAT+TGG | 0.397158 | 5.1:-66540209 | None:intergenic |
GATTCATTGATGGAAGAGTT+TGG | 0.399334 | 5.1:+66540946 | MS.gene81684:CDS |
TGTTTGAAATTAGGAATTCC+TGG | 0.403021 | 5.1:+66540916 | MS.gene81684:CDS |
CAAGTGGAAGCAAGCATGCT+TGG | 0.416127 | 5.1:+66541109 | MS.gene81684:CDS |
GACGAAGAACCTGGAACAAA+TGG | 0.419319 | 5.1:+66541732 | MS.gene81684:CDS |
TACTGCCATGTTTGCTCCCA+TGG | 0.425598 | 5.1:+66541673 | MS.gene81684:CDS |
CTCTCTTCGTTTGTCATCAA+AGG | 0.426304 | 5.1:-66541710 | None:intergenic |
TCCTGATTTCGTTTGGGATG+AGG | 0.430977 | 5.1:-66541015 | None:intergenic |
TGGGAAGACCCACTTGATAT+AGG | 0.432491 | 5.1:+66541806 | MS.gene81684:CDS |
ATTGGTGATGCTAGCGTTGA+TGG | 0.438976 | 5.1:-66540191 | None:intergenic |
AGGAAAGTAGATTTGCTTGA+TGG | 0.454716 | 5.1:+66540634 | MS.gene81684:CDS |
ACGAAGAGAGACGAAGAACC+TGG | 0.455949 | 5.1:+66541723 | MS.gene81684:CDS |
AAGTGGAAGCAAGCATGCTT+GGG | 0.466214 | 5.1:+66541110 | MS.gene81684:CDS |
TGGTGTTAAAGATTCATTGA+TGG | 0.472954 | 5.1:+66540936 | MS.gene81684:CDS |
TTGATTACTTATGATCTGCC+TGG | 0.485276 | 5.1:+66540976 | MS.gene81684:CDS |
AAACTTTCTTGGAGAGAAGA+AGG | 0.493598 | 5.1:+66540237 | MS.gene81684:CDS |
ATCAATAATGCGTGACTCAA+AGG | 0.498983 | 5.1:-66541770 | None:intergenic |
GGACGGAATATCAAAATGAA+TGG | 0.506449 | 5.1:-66540082 | None:intergenic |
TTCAATTGTTCGATCTGAGA+AGG | 0.526562 | 5.1:+66540660 | MS.gene81684:CDS |
TTGTCATCAAAGGATCATAT+GGG | 0.529008 | 5.1:-66541700 | None:intergenic |
ATTGATGTTCTCTTGTTCAT+GGG | 0.529830 | 5.1:+66541787 | MS.gene81684:CDS |
GTTCACCATGGGAGCAAACA+TGG | 0.537962 | 5.1:-66541678 | None:intergenic |
CTTGTTGAGAATCTCATCAC+TGG | 0.539956 | 5.1:+66540118 | MS.gene81684:CDS |
TTGGTGATGCTAGCGTTGAT+GGG | 0.543746 | 5.1:-66540190 | None:intergenic |
CATCTTGTAGCGGAAACCCT+TGG | 0.558729 | 5.1:-66540146 | None:intergenic |
AGGGTTTCCGCTACAAGATG+AGG | 0.564650 | 5.1:+66540149 | MS.gene81684:CDS |
TGGATCATTGGTTACTCAAG+TGG | 0.565359 | 5.1:+66541093 | MS.gene81684:CDS |
ATCTGAGAAGGTGAAGGATG+AGG | 0.567425 | 5.1:+66540672 | MS.gene81684:CDS |
TGTCTATTTCCTATATCAAG+TGG | 0.568760 | 5.1:-66541815 | None:intergenic |
CTCATCACTGGTGTTACCAA+GGG | 0.573994 | 5.1:+66540130 | MS.gene81684:CDS |
ATCAATGAATCTTTAACACC+AGG | 0.576983 | 5.1:-66540934 | None:intergenic |
GGATCATATGGGTTCACCAT+GGG | 0.581435 | 5.1:-66541689 | None:intergenic |
GGATCGCTCTCACCAAAACC+AGG | 0.589789 | 5.1:-66540994 | None:intergenic |
GTCTATTTCCTATATCAAGT+GGG | 0.590675 | 5.1:-66541814 | None:intergenic |
TCTCATCACTGGTGTTACCA+AGG | 0.595050 | 5.1:+66540129 | MS.gene81684:CDS |
GTCATGTGCACTTATTAACC+AGG | 0.625933 | 5.1:+66540732 | MS.gene81684:CDS |
TGTTCGATCTGAGAAGGTGA+AGG | 0.628133 | 5.1:+66540666 | MS.gene81684:CDS |
TGGTGATGCTAGCGTTGATG+GGG | 0.676063 | 5.1:-66540189 | None:intergenic |
AGGATCATATGGGTTCACCA+TGG | 0.687430 | 5.1:-66541690 | None:intergenic |
ACACAAACCTCATCTTGTAG+CGG | 0.691692 | 5.1:-66540156 | None:intergenic |
TGATATAGGAAATAGACATG+TGG | 0.705651 | 5.1:+66541820 | MS.gene81684:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATAAATTAGATTAAAACTA+GGG | - | chr5.1:66540359-66540378 | None:intergenic | 10.0% |
!! | TTATAAATTAGATTAAAACT+AGG | - | chr5.1:66540360-66540379 | None:intergenic | 10.0% |
!!! | ATGAGTTAATTTTTTTATTT+TGG | + | chr5.1:66540502-66540521 | MS.gene81684:intron | 10.0% |
!!! | ATTTTAATTTCTTCAATTTT+AGG | + | chr5.1:66540292-66540311 | MS.gene81684:intron | 10.0% |
!!! | TTTATTTCTCAATTTATTAT+CGG | + | chr5.1:66541531-66541550 | MS.gene81684:intron | 10.0% |
!!! | TACTTCATTAAATTTAGTTT+AGG | + | chr5.1:66541317-66541336 | MS.gene81684:intron | 15.0% |
!! | TAAAATTGCATAAAACAACA+AGG | - | chr5.1:66540326-66540345 | None:intergenic | 20.0% |
!! | TTATTTGTGATTTACTAGTT+TGG | + | chr5.1:66540572-66540591 | MS.gene81684:intron | 20.0% |
!!! | AAATGAGTTAATCTTTTATC+TGG | + | chr5.1:66540470-66540489 | MS.gene81684:intron | 20.0% |
!!! | ACTTTTAACTTGACAAAATT+TGG | + | chr5.1:66541225-66541244 | MS.gene81684:intron | 20.0% |
!!! | TATTTGTGATTTACTAGTTT+GGG | + | chr5.1:66540573-66540592 | MS.gene81684:intron | 20.0% |
!!! | TTGAATTTGTGTTTGAAATT+AGG | + | chr5.1:66540907-66540926 | MS.gene81684:CDS | 20.0% |
! | ACAAAAATAAAGCATGTTCA+TGG | - | chr5.1:66540776-66540795 | None:intergenic | 25.0% |
! | GAATCGAATAATGTTGTATT+AGG | + | chr5.1:66540609-66540628 | MS.gene81684:intron | 25.0% |
! | GAGATAAAGTCTGATTTATT+TGG | + | chr5.1:66540536-66540555 | MS.gene81684:intron | 25.0% |
!! | ACAAAATTTGGAACTTTCAT+AGG | + | chr5.1:66541237-66541256 | MS.gene81684:intron | 25.0% |
!! | CATGATAGTTGTTATTCAAA+AGG | - | chr5.1:66541281-66541300 | None:intergenic | 25.0% |
!!! | TCAACAAGATCACTTATTTT+AGG | - | chr5.1:66540106-66540125 | None:intergenic | 25.0% |
ATCAATGAATCTTTAACACC+AGG | - | chr5.1:66540937-66540956 | None:intergenic | 30.0% | |
ATTGATGTTCTCTTGTTCAT+GGG | + | chr5.1:66541787-66541806 | MS.gene81684:CDS | 30.0% | |
GAATAATGTTGTATTAGGTG+AGG | + | chr5.1:66540614-66540633 | MS.gene81684:intron | 30.0% | |
GATGTTGTGTATTAACTTTC+AGG | + | chr5.1:66541650-66541669 | MS.gene81684:intron | 30.0% | |
GTCTATTTCCTATATCAAGT+GGG | - | chr5.1:66541817-66541836 | None:intergenic | 30.0% | |
GTCTGATTTATTTGGTTATC+TGG | + | chr5.1:66540544-66540563 | MS.gene81684:intron | 30.0% | |
TATTGATGTTCTCTTGTTCA+TGG | + | chr5.1:66541786-66541805 | MS.gene81684:CDS | 30.0% | |
TGATATAGGAAATAGACATG+TGG | + | chr5.1:66541820-66541839 | MS.gene81684:CDS | 30.0% | |
TGTCTATTTCCTATATCAAG+TGG | - | chr5.1:66541818-66541837 | None:intergenic | 30.0% | |
TTGTCATCAAAGGATCATAT+GGG | - | chr5.1:66541703-66541722 | None:intergenic | 30.0% | |
TTTGTCATCAAAGGATCATA+TGG | - | chr5.1:66541704-66541723 | None:intergenic | 30.0% | |
! | ACTTGTTTAGAGTGAGTTAA+CGG | + | chr5.1:66541380-66541399 | MS.gene81684:intron | 30.0% |
! | TGGTGTTAAAGATTCATTGA+TGG | + | chr5.1:66540936-66540955 | MS.gene81684:CDS | 30.0% |
! | TGTTTGAAATTAGGAATTCC+TGG | + | chr5.1:66540916-66540935 | MS.gene81684:CDS | 30.0% |
!! | ATGAAGCACTGAAATATACA+CGG | - | chr5.1:66541591-66541610 | None:intergenic | 30.0% |
!! | GAATGTTGTTGTTGTGTTTT+TGG | + | chr5.1:66540816-66540835 | MS.gene81684:intron | 30.0% |
!!! | CAAGATCACTTATTTTAGGA+CGG | - | chr5.1:66540102-66540121 | None:intergenic | 30.0% |
AAACTAAGGGAGAATTCTAG+AGG | - | chr5.1:66540863-66540882 | None:intergenic | 35.0% | |
AAACTTTCTTGGAGAGAAGA+AGG | + | chr5.1:66540237-66540256 | MS.gene81684:CDS | 35.0% | |
ATCAATAATGCGTGACTCAA+AGG | - | chr5.1:66541773-66541792 | None:intergenic | 35.0% | |
ATGTTCATGGACCATGTTAA+GGG | - | chr5.1:66540763-66540782 | None:intergenic | 35.0% | |
ATTGAGATCCGAAACTTTCT+TGG | + | chr5.1:66540226-66540245 | MS.gene81684:CDS | 35.0% | |
CAGATCACTTATATGCTGTT+TGG | - | chr5.1:66541627-66541646 | None:intergenic | 35.0% | |
GATTCATTGATGGAAGAGTT+TGG | + | chr5.1:66540946-66540965 | MS.gene81684:CDS | 35.0% | |
GGACGGAATATCAAAATGAA+TGG | - | chr5.1:66540085-66540104 | None:intergenic | 35.0% | |
TCAACAATGCCTCAAACTAA+GGG | - | chr5.1:66540876-66540895 | None:intergenic | 35.0% | |
TCTTCTCTCCAAGAAAGTTT+CGG | - | chr5.1:66540237-66540256 | None:intergenic | 35.0% | |
TTAATACCTGCAAGTCTATC+AGG | - | chr5.1:66541153-66541172 | None:intergenic | 35.0% | |
TTCAACAATGCCTCAAACTA+AGG | - | chr5.1:66540877-66540896 | None:intergenic | 35.0% | |
TTCAATTGTTCGATCTGAGA+AGG | + | chr5.1:66540660-66540679 | MS.gene81684:CDS | 35.0% | |
TTGATTACTTATGATCTGCC+TGG | + | chr5.1:66540976-66540995 | MS.gene81684:CDS | 35.0% | |
TTGTGTCACATCAATAGAAC+AGG | + | chr5.1:66541434-66541453 | MS.gene81684:intron | 35.0% | |
TTTCAGTGAGAATAAGTGTC+TGG | + | chr5.1:66541460-66541479 | MS.gene81684:intron | 35.0% | |
! | AGGAAAGTAGATTTGCTTGA+TGG | + | chr5.1:66540634-66540653 | MS.gene81684:CDS | 35.0% |
! | ATGACATTGAGCTTGTTTCT+AGG | + | chr5.1:66540710-66540729 | MS.gene81684:CDS | 35.0% |
! | TAGAATTCTCCCTTAGTTTG+AGG | + | chr5.1:66540864-66540883 | MS.gene81684:intron | 35.0% |
! | TTTACTAGTTTGGGAATCTG+TGG | + | chr5.1:66540582-66540601 | MS.gene81684:intron | 35.0% |
!!! | GTTGACAAGTTTTGGATCAT+TGG | + | chr5.1:66541081-66541100 | MS.gene81684:CDS | 35.0% |
ACACAAACCTCATCTTGTAG+CGG | - | chr5.1:66540159-66540178 | None:intergenic | 40.0% | |
CATGTTCATGGACCATGTTA+AGG | - | chr5.1:66540764-66540783 | None:intergenic | 40.0% | |
CTCTCTTCGTTTGTCATCAA+AGG | - | chr5.1:66541713-66541732 | None:intergenic | 40.0% | |
CTTGTTGAGAATCTCATCAC+TGG | + | chr5.1:66540118-66540137 | MS.gene81684:CDS | 40.0% | |
GACGATTCCTGATTTCGTTT+GGG | - | chr5.1:66541024-66541043 | None:intergenic | 40.0% | |
GGAACAGAAATGCCAAGTTA+AGG | + | chr5.1:66540837-66540856 | MS.gene81684:intron | 40.0% | |
GTCATGTGCACTTATTAACC+AGG | + | chr5.1:66540732-66540751 | MS.gene81684:CDS | 40.0% | |
TACATACCTGATAGACTTGC+AGG | + | chr5.1:66541144-66541163 | MS.gene81684:CDS | 40.0% | |
TGACGATTCCTGATTTCGTT+TGG | - | chr5.1:66541025-66541044 | None:intergenic | 40.0% | |
TGTTCATGGACCATGTTAAG+GGG | - | chr5.1:66540762-66540781 | None:intergenic | 40.0% | |
! | ACTTATGATCTGCCTGGTTT+TGG | + | chr5.1:66540982-66541001 | MS.gene81684:CDS | 40.0% |
! | GAATTCTAGAGGCCTTAACT+TGG | - | chr5.1:66540852-66540871 | None:intergenic | 40.0% |
! | TGGATCATTGGTTACTCAAG+TGG | + | chr5.1:66541093-66541112 | MS.gene81684:CDS | 40.0% |
!! | CTCAATCGACTTGTTGTCAT+TGG | - | chr5.1:66540212-66540231 | None:intergenic | 40.0% |
!!! | AAGGATGAGGTTGTTTTGGA+TGG | + | chr5.1:66540685-66540704 | MS.gene81684:CDS | 40.0% |
!!! | CTCTTGGTGTTGACAAGTTT+TGG | + | chr5.1:66541073-66541092 | MS.gene81684:CDS | 40.0% |
!!! | TCGTTTTTAGCTGATGCTCT+TGG | + | chr5.1:66541057-66541076 | MS.gene81684:CDS | 40.0% |
AAGTGGAAGCAAGCATGCTT+GGG | + | chr5.1:66541110-66541129 | MS.gene81684:CDS | 45.0% | |
AGGATCATATGGGTTCACCA+TGG | - | chr5.1:66541693-66541712 | None:intergenic | 45.0% | |
ATCTGAGAAGGTGAAGGATG+AGG | + | chr5.1:66540672-66540691 | MS.gene81684:CDS | 45.0% | |
GACGAAGAACCTGGAACAAA+TGG | + | chr5.1:66541732-66541751 | MS.gene81684:CDS | 45.0% | |
GGATCATATGGGTTCACCAT+GGG | - | chr5.1:66541692-66541711 | None:intergenic | 45.0% | |
TCCTCATCCCAAACGAAATC+AGG | + | chr5.1:66541014-66541033 | MS.gene81684:CDS | 45.0% | |
TGGGAAGACCCACTTGATAT+AGG | + | chr5.1:66541806-66541825 | MS.gene81684:CDS | 45.0% | |
TGTTCGATCTGAGAAGGTGA+AGG | + | chr5.1:66540666-66540685 | MS.gene81684:CDS | 45.0% | |
! | GGTGAAGGATGAGGTTGTTT+TGG | + | chr5.1:66540681-66540700 | MS.gene81684:CDS | 45.0% |
! | TCCTGATTTCGTTTGGGATG+AGG | - | chr5.1:66541018-66541037 | None:intergenic | 45.0% |
!! | ATTGGTGATGCTAGCGTTGA+TGG | - | chr5.1:66540194-66540213 | None:intergenic | 45.0% |
!! | CTCATCACTGGTGTTACCAA+GGG | + | chr5.1:66540130-66540149 | MS.gene81684:CDS | 45.0% |
!! | TCTCATCACTGGTGTTACCA+AGG | + | chr5.1:66540129-66540148 | MS.gene81684:CDS | 45.0% |
!! | TTGGTGATGCTAGCGTTGAT+GGG | - | chr5.1:66540193-66540212 | None:intergenic | 45.0% |
ACCAGGTACACCCCTTAACA+TGG | + | chr5.1:66540749-66540768 | MS.gene81684:intron | 50.0% | |
ACGAAGAGAGACGAAGAACC+TGG | + | chr5.1:66541723-66541742 | MS.gene81684:CDS | 50.0% | |
AGGGTTTCCGCTACAAGATG+AGG | + | chr5.1:66540149-66540168 | MS.gene81684:CDS | 50.0% | |
CAAGTGGAAGCAAGCATGCT+TGG | + | chr5.1:66541109-66541128 | MS.gene81684:CDS | 50.0% | |
GTTCACCATGGGAGCAAACA+TGG | - | chr5.1:66541681-66541700 | None:intergenic | 50.0% | |
TACTGCCATGTTTGCTCCCA+TGG | + | chr5.1:66541673-66541692 | MS.gene81684:CDS | 50.0% | |
TGTCAGTGTCATGTCGTGTC+TGG | + | chr5.1:66541562-66541581 | MS.gene81684:intron | 50.0% | |
TGTTCGCGTCCATTTGTTCC+AGG | - | chr5.1:66541744-66541763 | None:intergenic | 50.0% | |
! | ACCATGTTAAGGGGTGTACC+TGG | - | chr5.1:66540753-66540772 | None:intergenic | 50.0% |
! | CATCTTGTAGCGGAAACCCT+TGG | - | chr5.1:66540149-66540168 | None:intergenic | 50.0% |
!! | TGGTGATGCTAGCGTTGATG+GGG | - | chr5.1:66540192-66540211 | None:intergenic | 50.0% |
GGATCGCTCTCACCAAAACC+AGG | - | chr5.1:66540997-66541016 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 66540070 | 66541850 | 66540070 | ID=MS.gene81684 |
chr5.1 | mRNA | 66540070 | 66541850 | 66540070 | ID=MS.gene81684.t1;Parent=MS.gene81684 |
chr5.1 | exon | 66540070 | 66540258 | 66540070 | ID=MS.gene81684.t1.exon1;Parent=MS.gene81684.t1 |
chr5.1 | CDS | 66540070 | 66540258 | 66540070 | ID=cds.MS.gene81684.t1;Parent=MS.gene81684.t1 |
chr5.1 | exon | 66540631 | 66540753 | 66540631 | ID=MS.gene81684.t1.exon2;Parent=MS.gene81684.t1 |
chr5.1 | CDS | 66540631 | 66540753 | 66540631 | ID=cds.MS.gene81684.t1;Parent=MS.gene81684.t1 |
chr5.1 | exon | 66540880 | 66541165 | 66540880 | ID=MS.gene81684.t1.exon3;Parent=MS.gene81684.t1 |
chr5.1 | CDS | 66540880 | 66541165 | 66540880 | ID=cds.MS.gene81684.t1;Parent=MS.gene81684.t1 |
chr5.1 | exon | 66541672 | 66541850 | 66541672 | ID=MS.gene81684.t1.exon4;Parent=MS.gene81684.t1 |
chr5.1 | CDS | 66541672 | 66541850 | 66541672 | ID=cds.MS.gene81684.t1;Parent=MS.gene81684.t1 |
Gene Sequence |
Protein sequence |