Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81769.t1 | XP_013467958.1 | 94.9 | 923 | 47 | 0 | 98 | 1020 | 1 | 923 | 0.00E+00 | 1126.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81769.t1 | O82039 | 81.8 | 929 | 159 | 3 | 98 | 1016 | 1 | 929 | 3.0e-262 | 906.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81769.t1 | A0A072VV72 | 94.9 | 923 | 47 | 0 | 98 | 1020 | 1 | 923 | 0.0e+00 | 1126.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053541 | MS.gene81769 | 0.826155 | 3.17E-54 | -1.69E-46 |
| MS.gene053542 | MS.gene81769 | 0.82356 | 1.30E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81769.t1 | MTR_1g059610 | 98.592 | 923 | 13 | 0 | 98 | 1020 | 1 | 923 | 0.0 | 1897 |
| MS.gene81769.t1 | MTR_1g079510 | 26.969 | 838 | 515 | 13 | 195 | 950 | 148 | 970 | 1.05e-82 | 289 |
| MS.gene81769.t1 | MTR_1g079510 | 32.830 | 265 | 171 | 1 | 272 | 536 | 116 | 373 | 1.93e-35 | 146 |
| MS.gene81769.t1 | MTR_1g079510 | 29.674 | 337 | 189 | 5 | 235 | 537 | 120 | 442 | 4.17e-35 | 145 |
| MS.gene81769.t1 | MTR_1g079510 | 29.670 | 182 | 119 | 2 | 384 | 558 | 78 | 257 | 5.80e-18 | 90.1 |
| MS.gene81769.t1 | MTR_1g079510 | 27.711 | 249 | 171 | 2 | 302 | 550 | 78 | 317 | 1.04e-17 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81769.t1 | AT3G11540 | 81.194 | 888 | 161 | 3 | 105 | 988 | 6 | 891 | 0.0 | 1512 |
| MS.gene81769.t1 | AT3G11540 | 65.262 | 688 | 195 | 7 | 305 | 988 | 62 | 709 | 0.0 | 899 |
| MS.gene81769.t1 | AT3G11540 | 64.615 | 260 | 86 | 2 | 105 | 364 | 6 | 259 | 3.53e-97 | 323 |
| MS.gene81769.t1 | AT3G11540 | 32.287 | 223 | 143 | 3 | 261 | 480 | 51 | 268 | 4.71e-21 | 99.8 |
| MS.gene81769.t1 | AT3G04240 | 26.118 | 850 | 535 | 17 | 148 | 951 | 160 | 962 | 7.72e-76 | 270 |
| MS.gene81769.t1 | AT3G04240 | 28.487 | 337 | 193 | 5 | 235 | 537 | 111 | 433 | 1.20e-34 | 144 |
| MS.gene81769.t1 | AT3G04240 | 26.968 | 775 | 473 | 17 | 223 | 951 | 2 | 729 | 5.66e-73 | 257 |
| MS.gene81769.t1 | AT3G04240 | 28.837 | 215 | 142 | 3 | 148 | 360 | 63 | 268 | 4.72e-14 | 77.0 |
Find 256 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAACAATCACTTTATATT+TGG | 0.174755 | 1.3:+43269636 | None:intergenic |
| CCTATCACAAGAGGCCTTTC+AGG | 0.182295 | 1.3:+43269733 | None:intergenic |
| GGCTATAGCTTTGACAGATT+TGG | 0.190528 | 1.3:-43273406 | MS.gene81769:CDS |
| CATTTCAGGTCTGGAGAATT+TGG | 0.193184 | 1.3:-43264787 | MS.gene81769:intron |
| GGGATTGGGGTTTGCGATTT+AGG | 0.202719 | 1.3:-43269798 | MS.gene81769:CDS |
| AGAAAGCTTTGTATTATAAT+TGG | 0.214202 | 1.3:-43272888 | MS.gene81769:CDS |
| AGAAGATCAAGTTGATATTT+TGG | 0.224534 | 1.3:-43268003 | MS.gene81769:CDS |
| GAGAAGAAGGTGAAGATTAA+AGG | 0.230574 | 1.3:+43280375 | None:intergenic |
| GTTCCAATCCCAACTGTTCT+AGG | 0.252656 | 1.3:+43266421 | None:intergenic |
| TGAAGATGAATATGTTAAAT+TGG | 0.260888 | 1.3:-43264754 | MS.gene81769:CDS |
| TTTACCACGAGGCGAGAATT+TGG | 0.263350 | 1.3:+43266492 | None:intergenic |
| TCCTCTCCGGTGACGGCGTT+TGG | 0.269490 | 1.3:+43280463 | None:intergenic |
| ATGCTTGCAGATGCAGAATA+TGG | 0.277525 | 1.3:-43279426 | MS.gene81769:CDS |
| CTCCTACAGTATTGAAGGTT+TGG | 0.283896 | 1.3:-43266536 | MS.gene81769:CDS |
| AACGTTTCCTTTCAGGGATT+GGG | 0.284934 | 1.3:-43269812 | MS.gene81769:intron |
| GTTATGCAGGAGTTCTTTAC+AGG | 0.298205 | 1.3:-43271793 | MS.gene81769:intron |
| AAGGAGTTAGGCGGAGAAAA+TGG | 0.299798 | 1.3:-43279650 | MS.gene81769:CDS |
| GCTATAGCTTTGACAGATTT+GGG | 0.302908 | 1.3:-43273405 | MS.gene81769:CDS |
| TGCTTTGTATGAGCGTGTTT+TGG | 0.303672 | 1.3:-43279492 | MS.gene81769:CDS |
| GGTGGAGATGATACTGTTTC+GGG | 0.315838 | 1.3:-43279593 | MS.gene81769:CDS |
| AACTACTTCTGCTTTGTTCC+AGG | 0.333719 | 1.3:+43267180 | None:intergenic |
| TATAATCTTGGGGTTGCTTA+TGG | 0.339291 | 1.3:-43272847 | MS.gene81769:CDS |
| GGACAAACAGGACCAGCTTC+AGG | 0.340061 | 1.3:+43267004 | None:intergenic |
| GCCATTGTTCTAACGGATAT+CGG | 0.344530 | 1.3:-43274734 | MS.gene81769:CDS |
| AAGAGTGGCGGTGGTGGTGG+TGG | 0.360308 | 1.3:+43280422 | None:intergenic |
| TCGCCAACATTCTGCGTTCG+AGG | 0.367764 | 1.3:-43279535 | MS.gene81769:CDS |
| TCCTACAGTATTGAAGGTTT+GGG | 0.373461 | 1.3:-43266535 | MS.gene81769:CDS |
| ATTAACGGATGCGAAGAAAA+TGG | 0.378522 | 1.3:-43264426 | MS.gene81769:CDS |
| TGAAAAGAAGGTTGCTGATA+TGG | 0.388018 | 1.3:-43268030 | MS.gene81769:CDS |
| CTTACGTTTACGACCCTTGT+TGG | 0.388500 | 1.3:+43264513 | None:intergenic |
| CTAACACTATCACAGCAAAA+TGG | 0.388533 | 1.3:+43266462 | None:intergenic |
| AGAAGAAGGTGAAGATTAAA+GGG | 0.392471 | 1.3:+43280376 | None:intergenic |
| AGTGGCGGTGGTGGTGGTGG+TGG | 0.393509 | 1.3:+43280425 | None:intergenic |
| GATTACTCCTACAGTATTGA+AGG | 0.404177 | 1.3:-43266541 | MS.gene81769:CDS |
| TAAAGAAGAAGGTCGCTTGA+TGG | 0.412204 | 1.3:-43279318 | MS.gene81769:CDS |
| GCTGATGCTATGTATAATCT+TGG | 0.412712 | 1.3:-43272859 | MS.gene81769:CDS |
| CTGATGCTATGTATAATCTT+GGG | 0.412773 | 1.3:-43272858 | MS.gene81769:CDS |
| GTGAAGAGTGGCGGTGGTGG+TGG | 0.413209 | 1.3:+43280419 | None:intergenic |
| CCACCGAAACTTAATATTAA+CGG | 0.413685 | 1.3:-43264441 | MS.gene81769:CDS |
| AAGTGTAGGTGGAGAGAAGA+AGG | 0.414397 | 1.3:+43280362 | None:intergenic |
| AATGTCAGACGCTAACTTCA+TGG | 0.415602 | 1.3:+43264731 | None:intergenic |
| TTGGACACCTTTCCATATGC+TGG | 0.418408 | 1.3:-43265425 | MS.gene81769:CDS |
| GGTGAAGATTAAAGGGAGAA+TGG | 0.421391 | 1.3:+43280383 | None:intergenic |
| TGAGATGCTTAAGTTTGATA+TGG | 0.421506 | 1.3:-43272824 | MS.gene81769:intron |
| ACAGAGTGTGTAAAATAATC+AGG | 0.422004 | 1.3:+43269700 | None:intergenic |
| CCAACTCCTGCTCTTTCCAA+TGG | 0.425192 | 1.3:-43266983 | MS.gene81769:CDS |
| TGGTGGAGATGATACTGTTT+CGG | 0.425439 | 1.3:-43279594 | MS.gene81769:CDS |
| GTCATATCAAAAGGCGTTAC+GGG | 0.426642 | 1.3:-43274792 | MS.gene81769:CDS |
| TTTAATGACTGTGAAAAGTT+CGG | 0.427034 | 1.3:+43272452 | None:intergenic |
| GTAGGCAATCCTGTAGTATT+GGG | 0.428950 | 1.3:+43267240 | None:intergenic |
| AACGTAAGTGAGGGCAGCCC+TGG | 0.430162 | 1.3:-43264498 | MS.gene81769:CDS |
| TCATACTGCAAACAATAAGT+TGG | 0.431329 | 1.3:-43267967 | MS.gene81769:CDS |
| CATCCGTTAATATTAAGTTT+CGG | 0.431962 | 1.3:+43264438 | None:intergenic |
| TCATAAAGAAGGGTGGGATC+TGG | 0.434639 | 1.3:-43268073 | MS.gene81769:CDS |
| CTCTCCGGTGATGGCTCTGG+CGG | 0.434912 | 1.3:+43280867 | None:intergenic |
| CCGCGCAATGTGGATTGAAA+TGG | 0.435847 | 1.3:+43272655 | None:intergenic |
| GATTCACTGGCAGACCCTCC+TGG | 0.436684 | 1.3:-43267198 | MS.gene81769:CDS |
| TGTAGGCAATCCTGTAGTAT+TGG | 0.438062 | 1.3:+43267239 | None:intergenic |
| GTCGTAGTTGTCCCAGCATA+TGG | 0.438408 | 1.3:+43265413 | None:intergenic |
| CAGCCAGCATACTATAACCT+TGG | 0.439383 | 1.3:-43274510 | MS.gene81769:CDS |
| TCAGCAGCTGCTTTGTATGT+AGG | 0.440272 | 1.3:+43274764 | None:intergenic |
| TACACTCCTTCCCCTGAAGC+TGG | 0.440276 | 1.3:-43267016 | MS.gene81769:CDS |
| CCTGAAAGGCCTCTTGTGAT+AGG | 0.441989 | 1.3:-43269733 | MS.gene81769:CDS |
| GGTGTAGTCATGATAGATAA+GGG | 0.442114 | 1.3:+43269657 | None:intergenic |
| AGAGCAGGAGTTGGACAAAC+AGG | 0.442882 | 1.3:+43266992 | None:intergenic |
| AAAGGAAGCAATCTGGTAAT+CGG | 0.442974 | 1.3:+43267041 | None:intergenic |
| GGTACCAACATAAAGCTTGC+AGG | 0.444006 | 1.3:-43274713 | MS.gene81769:CDS |
| AATTCCATGCGTTTCAAAGA+AGG | 0.447507 | 1.3:+43264573 | None:intergenic |
| CTTATTCTCTGATGGACATC+AGG | 0.450885 | 1.3:-43266344 | MS.gene81769:intron |
| GGATCTGGAAAGATATTTAC+GGG | 0.452463 | 1.3:-43268058 | MS.gene81769:CDS |
| CCATTGGCCATGACAGATCC+AGG | 0.452512 | 1.3:+43264480 | None:intergenic |
| TAGAGAGAAAGTCATAAAGA+AGG | 0.454246 | 1.3:-43268084 | MS.gene81769:CDS |
| GTAGAGGCCCTCATTGGAAA+AGG | 0.454582 | 1.3:-43279452 | MS.gene81769:CDS |
| CTCTGGCGGGTCTCCGACGG+TGG | 0.456680 | 1.3:+43280881 | None:intergenic |
| CTTGGAGCAGTCATATCAAA+AGG | 0.457406 | 1.3:-43274801 | MS.gene81769:intron |
| CGACTCTCGAAATGCTGGCC+AGG | 0.457423 | 1.3:-43271711 | MS.gene81769:intron |
| AGGCTCTCCGGTGATGGCTC+TGG | 0.457907 | 1.3:+43280864 | None:intergenic |
| AAACAATAAGTTGGGAATGA+TGG | 0.459317 | 1.3:-43267958 | MS.gene81769:CDS |
| AACCCTAGAACAGTTGGGAT+TGG | 0.459844 | 1.3:-43266424 | MS.gene81769:CDS |
| AGTCATATCAAAAGGCGTTA+CGG | 0.460125 | 1.3:-43274793 | MS.gene81769:CDS |
| GGGATCTGGAAAGATATTTA+CGG | 0.460406 | 1.3:-43268059 | MS.gene81769:CDS |
| ATTGGTTATCCCAATACTAC+AGG | 0.463408 | 1.3:-43267249 | MS.gene81769:CDS |
| ATGTCGACCTGCTCCAGTTC+AGG | 0.465083 | 1.3:-43267934 | MS.gene81769:intron |
| TCTCCGGTGACGGCGTTTGG+AGG | 0.468371 | 1.3:+43280466 | None:intergenic |
| TCGCTTGATGGAGGCGGCTG+AGG | 0.468708 | 1.3:-43279306 | MS.gene81769:intron |
| CCGGTGAAGAGTGGCGGTGG+TGG | 0.468864 | 1.3:+43280416 | None:intergenic |
| GGTATTCTTTATAAAGAAGA+AGG | 0.471517 | 1.3:-43279329 | MS.gene81769:CDS |
| GCGGAAGCTTGTAACAATCT+AGG | 0.472813 | 1.3:-43272636 | MS.gene81769:CDS |
| AATGGAAAAGAAAAGGAGTT+AGG | 0.473830 | 1.3:-43279662 | MS.gene81769:CDS |
| GTGATTCTATAATCAATTGT+AGG | 0.474581 | 1.3:+43267222 | None:intergenic |
| CTCTTCTTCCTCTCCGGTGA+CGG | 0.477008 | 1.3:+43280456 | None:intergenic |
| AGCATTCTACAGCTTTATCA+AGG | 0.477598 | 1.3:+43272589 | None:intergenic |
| TGACGGAGGCTCTCCGGTGA+TGG | 0.478669 | 1.3:+43280858 | None:intergenic |
| TGATGGGAATGGAAAAGAAA+AGG | 0.481433 | 1.3:-43279669 | MS.gene81769:CDS |
| TGCTTGACATGCAGGTGACT+TGG | 0.481716 | 1.3:-43267272 | MS.gene81769:intron |
| TTGATTACAGGTTCCGTCCA+TGG | 0.482032 | 1.3:+43280920 | None:intergenic |
| GGAAATGTAGAGGCCCTCAT+TGG | 0.482457 | 1.3:-43279458 | MS.gene81769:CDS |
| CATACTGCAAACAATAAGTT+GGG | 0.482594 | 1.3:-43267966 | MS.gene81769:CDS |
| TGTTGGTGTTGTTGAAGTGT+AGG | 0.486504 | 1.3:+43280348 | None:intergenic |
| GACACGCTCTTCTTCCTCTC+CGG | 0.487545 | 1.3:+43280450 | None:intergenic |
| CTTTCAACCCTAGAACAGTT+GGG | 0.489454 | 1.3:-43266429 | MS.gene81769:CDS |
| TGGCCAGCATTTCGAGAGTC+GGG | 0.492424 | 1.3:+43271713 | None:intergenic |
| ACCGAATGTAATAAAACCAT+TGG | 0.492738 | 1.3:+43266967 | None:intergenic |
| TTCCAATCCCAACTGTTCTA+GGG | 0.493195 | 1.3:+43266422 | None:intergenic |
| GTGTAACAAAGGAAGCAATC+TGG | 0.494008 | 1.3:+43267034 | None:intergenic |
| TATATCAACAATTTACATCA+TGG | 0.495872 | 1.3:-43269771 | MS.gene81769:CDS |
| TCTCCGGTGATGGCTCTGGC+GGG | 0.495977 | 1.3:+43280868 | None:intergenic |
| GATCCCGACTCTCGAAATGC+TGG | 0.496321 | 1.3:-43271716 | MS.gene81769:CDS |
| GGAGTTCTTTACAGGGATGC+TGG | 0.497325 | 1.3:-43271785 | MS.gene81769:CDS |
| TCTTTCAACCCTAGAACAGT+TGG | 0.497799 | 1.3:-43266430 | MS.gene81769:CDS |
| CTAATTTCTCCAGGGCAAGA+TGG | 0.499035 | 1.3:-43272331 | MS.gene81769:intron |
| GTTTCCTGCAAGCTTTATGT+TGG | 0.502386 | 1.3:+43274709 | None:intergenic |
| TTATAGAATCACCGATTCAC+TGG | 0.502813 | 1.3:-43267211 | MS.gene81769:CDS |
| TTGTATGCTTCTGCATATGT+CGG | 0.504928 | 1.3:+43272267 | None:intergenic |
| GAACCATCTGTTAGTGCTGG+TGG | 0.505383 | 1.3:-43279611 | MS.gene81769:CDS |
| TGCGATTAAGATGGCTTGGA+TGG | 0.506071 | 1.3:-43279699 | MS.gene81769:CDS |
| TGTTCCTTCTTTGAAACGCA+TGG | 0.506434 | 1.3:-43264577 | MS.gene81769:CDS |
| AAGTTTGCTCCATCACAGAC+AGG | 0.506847 | 1.3:+43264657 | None:intergenic |
| CTGATGTGACGGAGGCTCTC+CGG | 0.507056 | 1.3:+43280852 | None:intergenic |
| ATGGAATTGTTAGAACAGTC+TGG | 0.508906 | 1.3:-43264558 | MS.gene81769:CDS |
| TGCTTGCAGATGCAGAATAT+GGG | 0.509417 | 1.3:-43279425 | MS.gene81769:CDS |
| GACATGCAGGTGACTTGGAT+TGG | 0.510733 | 1.3:-43267267 | MS.gene81769:intron |
| TGGTGTAGTCATGATAGATA+AGG | 0.510960 | 1.3:+43269656 | None:intergenic |
| TGGACACCTTTCCATATGCT+GGG | 0.511736 | 1.3:-43265424 | MS.gene81769:CDS |
| TCCATCACAGACAGGGGACT+TGG | 0.516446 | 1.3:+43264665 | None:intergenic |
| TCACAGTCATTAAATAACCT+TGG | 0.516706 | 1.3:-43272443 | MS.gene81769:CDS |
| TTACGGGACTGATGAAAAGA+AGG | 0.520027 | 1.3:-43268042 | MS.gene81769:CDS |
| CAGTAGTAAGCAGGGAGTGG+TGG | 0.520963 | 1.3:-43264388 | MS.gene81769:CDS |
| GTTCCATGCGTTACAATGGC+TGG | 0.522013 | 1.3:-43265368 | MS.gene81769:CDS |
| AGAGAGAAAGTCATAAAGAA+GGG | 0.522740 | 1.3:-43268083 | MS.gene81769:CDS |
| TGGCTCTGGCGGGTCTCCGA+CGG | 0.523150 | 1.3:+43280878 | None:intergenic |
| GACAAACAGGACCAGCTTCA+GGG | 0.523778 | 1.3:+43267005 | None:intergenic |
| GATGGAGCAAACTTCATCCT+TGG | 0.523953 | 1.3:-43264648 | MS.gene81769:CDS |
| TATGCAAGCTTATTCTCTGA+TGG | 0.524107 | 1.3:-43266352 | MS.gene81769:CDS |
| GAGAAAGTCATAAAGAAGGG+TGG | 0.526509 | 1.3:-43268080 | MS.gene81769:CDS |
| GCAATGAACTACATAGATGA+AGG | 0.527116 | 1.3:-43270515 | MS.gene81769:CDS |
| GTTGAAATTCAGTAGTAAGC+AGG | 0.527448 | 1.3:-43264397 | MS.gene81769:CDS |
| AGGAGGGTCTGCCAGTGAAT+CGG | 0.530447 | 1.3:+43267200 | None:intergenic |
| TGGTGTTGTTGAAGTGTAGG+TGG | 0.530664 | 1.3:+43280351 | None:intergenic |
| TCCAAGTCCCCTGTCTGTGA+TGG | 0.533672 | 1.3:-43264666 | MS.gene81769:CDS |
| TATATATAGGTTAAACTGGA+GGG | 0.535539 | 1.3:-43272940 | MS.gene81769:intron |
| CCACCACCGCCACTCTTCAC+CGG | 0.536036 | 1.3:-43280416 | MS.gene81769:CDS |
| GGGCAGCCCTGGATCTGTCA+TGG | 0.536846 | 1.3:-43264487 | MS.gene81769:CDS |
| CCTGGATCTGTCATGGCCAA+TGG | 0.537171 | 1.3:-43264480 | MS.gene81769:CDS |
| TACTTCTGCTTTGTTCCAGG+AGG | 0.537366 | 1.3:+43267183 | None:intergenic |
| AGTCAACATATAGGAATATG+TGG | 0.538234 | 1.3:-43264620 | MS.gene81769:CDS |
| GACTTTCTCTCTAAACCGAA+TGG | 0.541018 | 1.3:+43268094 | None:intergenic |
| ACGTTTCCTTTCAGGGATTG+GGG | 0.541398 | 1.3:-43269811 | MS.gene81769:intron |
| CATCCTCCAAACGCCGTCAC+CGG | 0.541736 | 1.3:-43280469 | MS.gene81769:CDS |
| AAAGTGCGATTAAGATGGCT+TGG | 0.542411 | 1.3:-43279703 | MS.gene81769:CDS |
| ATAAAACCATTGGAAAGAGC+AGG | 0.545362 | 1.3:+43266977 | None:intergenic |
| ATGCTTAGCCATTGTTCTAA+CGG | 0.545780 | 1.3:-43274741 | MS.gene81769:CDS |
| ATCGTGGTTAAGAAGAATGA+GGG | 0.546515 | 1.3:+43266377 | None:intergenic |
| ATTGGGGTTTGCGATTTAGG+AGG | 0.548190 | 1.3:-43269795 | MS.gene81769:CDS |
| CCTCCGGTGAAGAGTGGCGG+TGG | 0.550710 | 1.3:+43280413 | None:intergenic |
| AGAAAGTCATAAAGAAGGGT+GGG | 0.553285 | 1.3:-43268079 | MS.gene81769:CDS |
| GACATGTGAATCTTTATACA+TGG | 0.554128 | 1.3:-43265393 | MS.gene81769:CDS |
| GTTCCTCGAACGCAGAATGT+TGG | 0.555210 | 1.3:+43279532 | None:intergenic |
| ACGCCAAGGTTATAGTATGC+TGG | 0.557401 | 1.3:+43274507 | None:intergenic |
| AGAAGGTCGCTTGATGGAGG+CGG | 0.558114 | 1.3:-43279312 | MS.gene81769:CDS |
| ACTTCTGCTTTGTTCCAGGA+GGG | 0.559641 | 1.3:+43267184 | None:intergenic |
| TAGAGGCCCTCATTGGAAAA+GGG | 0.561915 | 1.3:-43279451 | MS.gene81769:CDS |
| TGTTTATTCAGCAGTTGTCA+AGG | 0.564705 | 1.3:-43269620 | MS.gene81769:intron |
| AGGTTGTAGAAAGCTGTTGT+TGG | 0.565018 | 1.3:+43280331 | None:intergenic |
| CAGTATTGAAGGTTTGGGCA+AGG | 0.565819 | 1.3:-43266530 | MS.gene81769:CDS |
| CCATTGGAAAGAGCAGGAGT+TGG | 0.565988 | 1.3:+43266983 | None:intergenic |
| ATACAGGCATGTTGAAGAGT+TGG | 0.568551 | 1.3:-43267065 | MS.gene81769:intron |
| ATATCAACAATTTACATCAT+GGG | 0.568966 | 1.3:-43269770 | MS.gene81769:CDS |
| CTGCGATGAGTTGAATCCAT+TGG | 0.570253 | 1.3:+43264464 | None:intergenic |
| GCTTGGATGGAAGAAAATGA+TGG | 0.572619 | 1.3:-43279686 | MS.gene81769:CDS |
| ACAGGACCAGCTTCAGGGGA+AGG | 0.572943 | 1.3:+43267010 | None:intergenic |
| TTGGTCTAGAGTCAACATAT+AGG | 0.574276 | 1.3:-43264629 | MS.gene81769:CDS |
| CTGGCCAGCATTTCGAGAGT+CGG | 0.575758 | 1.3:+43271712 | None:intergenic |
| AAATCGAGGGGATTTGGAAG+CGG | 0.578393 | 1.3:-43274373 | MS.gene81769:CDS |
| AGTAGTAAGCAGGGAGTGGT+GGG | 0.579199 | 1.3:-43264387 | MS.gene81769:CDS |
| ATGGAAGAAAATGATGGGAA+TGG | 0.579523 | 1.3:-43279680 | MS.gene81769:CDS |
| TTTGACAGATTTGGGAACAA+AGG | 0.583823 | 1.3:-43273397 | MS.gene81769:intron |
| GGGAGTTCCATGCGTTACAA+TGG | 0.585085 | 1.3:-43265372 | MS.gene81769:CDS |
| GATCGTGGTTAAGAAGAATG+AGG | 0.587538 | 1.3:+43266376 | None:intergenic |
| GTAGGAAAGTGCGATTAAGA+TGG | 0.589642 | 1.3:-43279708 | MS.gene81769:intron |
| CCGTTAATATTAAGTTTCGG+TGG | 0.591862 | 1.3:+43264441 | None:intergenic |
| TTATATATAGGTTAAACTGG+AGG | 0.592431 | 1.3:-43272941 | MS.gene81769:intron |
| ACCGATATCCGTTAGAACAA+TGG | 0.593246 | 1.3:+43274733 | None:intergenic |
| AATAACAGCTCCGCCATGGA+CGG | 0.593777 | 1.3:-43280933 | None:intergenic |
| TCTCCGACGGTGGAAGTCAG+TGG | 0.594266 | 1.3:+43280891 | None:intergenic |
| CAATATGCTTCAGCATACAT+AGG | 0.595835 | 1.3:+43274417 | None:intergenic |
| TGTAGTTCATTGCAAGCAAG+CGG | 0.597782 | 1.3:+43270525 | None:intergenic |
| CCATTTCAATCCACATTGCG+CGG | 0.598593 | 1.3:-43272655 | MS.gene81769:CDS |
| CGGCTATTACTTGTTATGAG+AGG | 0.604626 | 1.3:-43274353 | MS.gene81769:intron |
| AAAGAACCATCTGTTAGTGC+TGG | 0.605131 | 1.3:-43279614 | MS.gene81769:CDS |
| TGTTGGCTCAGAGTTCTCAT+CGG | 0.605514 | 1.3:+43264530 | None:intergenic |
| GTTAGTCTTCTTAGCAACGT+TGG | 0.605579 | 1.3:-43265320 | MS.gene81769:intron |
| TTTCCTCCGGTGAAGAGTGG+CGG | 0.607144 | 1.3:+43280410 | None:intergenic |
| ACAAACAGGACCAGCTTCAG+GGG | 0.607615 | 1.3:+43267006 | None:intergenic |
| AGACCCGCCAGAGCCATCAC+CGG | 0.608811 | 1.3:-43280871 | MS.gene81769:CDS |
| ACAACTCAAAAGATCCTGAA+AGG | 0.609457 | 1.3:-43269747 | MS.gene81769:CDS |
| AAGGGTCGTAAACGTAAGTG+AGG | 0.611128 | 1.3:-43264508 | MS.gene81769:CDS |
| AGAAGAAGGTCGCTTGATGG+AGG | 0.611858 | 1.3:-43279315 | MS.gene81769:CDS |
| ATGAGAACTCTGAGCCAACA+AGG | 0.611903 | 1.3:-43264527 | MS.gene81769:CDS |
| TTGAAATTCAGTAGTAAGCA+GGG | 0.612768 | 1.3:-43264396 | MS.gene81769:CDS |
| ATTCAGTAGTAAGCAGGGAG+TGG | 0.614724 | 1.3:-43264391 | MS.gene81769:CDS |
| TAGCTTTAACAATCTTGCCA+AGG | 0.614821 | 1.3:-43266945 | MS.gene81769:intron |
| AGTTTGCTCCATCACAGACA+GGG | 0.615315 | 1.3:+43264658 | None:intergenic |
| GAACCAGCCATTGTAACGCA+TGG | 0.617679 | 1.3:+43265365 | None:intergenic |
| TAAAGCTGTAGAATGCTACC+AGG | 0.622266 | 1.3:-43272583 | MS.gene81769:intron |
| TGATGCTATGTATAATCTTG+GGG | 0.623907 | 1.3:-43272857 | MS.gene81769:CDS |
| GCTTGTGCTCTCACACATTG+TGG | 0.625603 | 1.3:-43279350 | MS.gene81769:CDS |
| GATACATATCCTATCACAAG+AGG | 0.628353 | 1.3:+43269724 | None:intergenic |
| ATATCAAAAGGCGTTACGGG+TGG | 0.632025 | 1.3:-43274789 | MS.gene81769:CDS |
| GCAGAAGCATACAATAACCT+AGG | 0.635669 | 1.3:-43272258 | MS.gene81769:intron |
| TCAGTGCATGCACACAATGT+TGG | 0.636781 | 1.3:-43265344 | MS.gene81769:CDS |
| TTATGCAGGAGTTCTTTACA+GGG | 0.637305 | 1.3:-43271792 | MS.gene81769:intron |
| TCCAAACGCCGTCACCGGAG+AGG | 0.637429 | 1.3:-43280464 | MS.gene81769:CDS |
| CCACCGCCACTCTTCACCGG+AGG | 0.638712 | 1.3:-43280413 | MS.gene81769:CDS |
| CCGACGGTGGAAGTCAGTGG+TGG | 0.639678 | 1.3:+43280894 | None:intergenic |
| TGCTGAAGCATATTGCAACA+TGG | 0.639915 | 1.3:-43274409 | MS.gene81769:CDS |
| TGATCATACGGCTGATGTGA+CGG | 0.642192 | 1.3:+43280841 | None:intergenic |
| ACATGTGAATCTTTATACAT+GGG | 0.643465 | 1.3:-43265392 | MS.gene81769:CDS |
| GTGTAGTCATGATAGATAAG+GGG | 0.643538 | 1.3:+43269658 | None:intergenic |
| GGAAAAGAAAAGGAGTTAGG+CGG | 0.643942 | 1.3:-43279659 | MS.gene81769:CDS |
| CAGGGGAAGGAGTGTAACAA+AGG | 0.644941 | 1.3:+43267023 | None:intergenic |
| CTTGGATGGAAGAAAATGAT+GGG | 0.645396 | 1.3:-43279685 | MS.gene81769:CDS |
| AAACAGTCTCAGGTAGTGTG+TGG | 0.651936 | 1.3:-43280495 | MS.gene81769:intron |
| AAAGCTTGCAGGAAACACTC+AGG | 0.653199 | 1.3:-43274702 | MS.gene81769:CDS |
| AATAAGCTTGCATATGATCG+TGG | 0.654127 | 1.3:+43266361 | None:intergenic |
| GGCAGAAGATCAACTCGTAG+TGG | 0.655351 | 1.3:+43266399 | None:intergenic |
| CCACCACTGACTTCCACCGT+CGG | 0.655661 | 1.3:-43280894 | MS.gene81769:CDS |
| TCTCCACCAGCACTAACAGA+TGG | 0.656480 | 1.3:+43279608 | None:intergenic |
| AGTTGTCCCAGCATATGGAA+AGG | 0.656859 | 1.3:+43265418 | None:intergenic |
| CTTGCAGGAAACACTCAGGA+GGG | 0.657439 | 1.3:-43274698 | MS.gene81769:CDS |
| CAAAATAGATCATCATTATG+CGG | 0.657503 | 1.3:-43274651 | MS.gene81769:intron |
| TTACAAGCTTCCGCGCAATG+TGG | 0.657608 | 1.3:+43272645 | None:intergenic |
| GCTGAAGCATATTGCAACAT+GGG | 0.658136 | 1.3:-43274408 | MS.gene81769:CDS |
| ATGTGGCACAGATATTGCAA+AGG | 0.661926 | 1.3:-43264603 | MS.gene81769:CDS |
| GCTGTGATAGTGTTAGACAG+AGG | 0.662643 | 1.3:-43266455 | MS.gene81769:CDS |
| TCTTATAAAATGCCACACCA+CGG | 0.667085 | 1.3:+43272908 | None:intergenic |
| TGCAGATGCAGAATATGGGT+AGG | 0.667692 | 1.3:-43279421 | MS.gene81769:CDS |
| TTTCAGAATAGACCACGCCA+AGG | 0.672931 | 1.3:+43274493 | None:intergenic |
| GCTTGCAGGAAACACTCAGG+AGG | 0.673057 | 1.3:-43274699 | MS.gene81769:CDS |
| CATTGGCCATGACAGATCCA+GGG | 0.673447 | 1.3:+43264481 | None:intergenic |
| GCCCAAACCTTCAATACTGT+AGG | 0.673618 | 1.3:+43266534 | None:intergenic |
| AGCATACTATAACCTTGGCG+TGG | 0.680382 | 1.3:-43274505 | MS.gene81769:CDS |
| AATTCCAAATTCTCGCCTCG+TGG | 0.681538 | 1.3:-43266496 | MS.gene81769:CDS |
| TGAGAACTCTGAGCCAACAA+GGG | 0.687752 | 1.3:-43264526 | MS.gene81769:CDS |
| GAGTGATGGTGGAAATGTAG+AGG | 0.690028 | 1.3:-43279468 | MS.gene81769:CDS |
| GCAATGTGGATTGAAATGGA+AGG | 0.691952 | 1.3:+43272659 | None:intergenic |
| GGGTGACATTAACCGTGGTG+TGG | 0.704448 | 1.3:-43272920 | MS.gene81769:CDS |
| AGGGTCGTAAACGTAAGTGA+GGG | 0.707509 | 1.3:-43264507 | MS.gene81769:CDS |
| TATATGTTGACTCTAGACCA+AGG | 0.708288 | 1.3:+43264631 | None:intergenic |
| TGAAATGATGCAATATGACA+TGG | 0.713132 | 1.3:-43274475 | MS.gene81769:CDS |
| GTTTGCTCCATCACAGACAG+GGG | 0.716045 | 1.3:+43264659 | None:intergenic |
| GTGGAGATGATACTGTTTCG+GGG | 0.718764 | 1.3:-43279592 | MS.gene81769:CDS |
| CTGGAGGGTGACATTAACCG+TGG | 0.722495 | 1.3:-43272925 | MS.gene81769:CDS |
| TCGTGGTTAAGAAGAATGAG+GGG | 0.735597 | 1.3:+43266378 | None:intergenic |
| GGACAGTGTATACAACACCA+AGG | 0.741726 | 1.3:+43272426 | None:intergenic |
| TCATACGGCTGATGTGACGG+AGG | 0.743320 | 1.3:+43280844 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 43264380 | 43280940 | 43264380 | ID=MS.gene81769 |
| chr1.3 | mRNA | 43264380 | 43280940 | 43264380 | ID=MS.gene81769.t1;Parent=MS.gene81769 |
| chr1.3 | exon | 43280850 | 43280940 | 43280850 | ID=MS.gene81769.t1.exon1;Parent=MS.gene81769.t1 |
| chr1.3 | CDS | 43280850 | 43280940 | 43280850 | ID=cds.MS.gene81769.t1;Parent=MS.gene81769.t1 |
| chr1.3 | exon | 43280327 | 43280511 | 43280327 | ID=MS.gene81769.t1.exon2;Parent=MS.gene81769.t1 |
| chr1.3 | CDS | 43280327 | 43280511 | 43280327 | ID=cds.MS.gene81769.t1;Parent=MS.gene81769.t1 |
| chr1.3 | exon | 43279307 | 43279726 | 43279307 | ID=MS.gene81769.t1.exon3;Parent=MS.gene81769.t1 |
| chr1.3 | CDS | 43279307 | 43279726 | 43279307 | ID=cds.MS.gene81769.t1;Parent=MS.gene81769.t1 |
| chr1.3 | exon | 43274652 | 43274813 | 43274652 | ID=MS.gene81769.t1.exon4;Parent=MS.gene81769.t1 |
| chr1.3 | CDS | 43274652 | 43274813 | 43274652 | ID=cds.MS.gene81769.t1;Parent=MS.gene81769.t1 |
| chr1.3 | exon | 43274354 | 43274529 | 43274354 | ID=MS.gene81769.t1.exon5;Parent=MS.gene81769.t1 |
| chr1.3 | CDS | 43274354 | 43274529 | 43274354 | ID=cds.MS.gene81769.t1;Parent=MS.gene81769.t1 |
| chr1.3 | exon | 43273398 | 43273473 | 43273398 | ID=MS.gene81769.t1.exon6;Parent=MS.gene81769.t1 |
| chr1.3 | CDS | 43273398 | 43273473 | 43273398 | ID=cds.MS.gene81769.t1;Parent=MS.gene81769.t1 |
| chr1.3 | exon | 43272825 | 43272953 | 43272825 | ID=MS.gene81769.t1.exon7;Parent=MS.gene81769.t1 |
| chr1.3 | CDS | 43272825 | 43272953 | 43272825 | ID=cds.MS.gene81769.t1;Parent=MS.gene81769.t1 |
| chr1.3 | exon | 43272584 | 43272703 | 43272584 | ID=MS.gene81769.t1.exon8;Parent=MS.gene81769.t1 |
| chr1.3 | CDS | 43272584 | 43272703 | 43272584 | ID=cds.MS.gene81769.t1;Parent=MS.gene81769.t1 |
| chr1.3 | exon | 43272424 | 43272492 | 43272424 | ID=MS.gene81769.t1.exon9;Parent=MS.gene81769.t1 |
| chr1.3 | CDS | 43272424 | 43272492 | 43272424 | ID=cds.MS.gene81769.t1;Parent=MS.gene81769.t1 |
| chr1.3 | exon | 43272259 | 43272340 | 43272259 | ID=MS.gene81769.t1.exon10;Parent=MS.gene81769.t1 |
| chr1.3 | CDS | 43272259 | 43272340 | 43272259 | ID=cds.MS.gene81769.t1;Parent=MS.gene81769.t1 |
| chr1.3 | exon | 43271712 | 43271806 | 43271712 | ID=MS.gene81769.t1.exon11;Parent=MS.gene81769.t1 |
| chr1.3 | CDS | 43271712 | 43271806 | 43271712 | ID=cds.MS.gene81769.t1;Parent=MS.gene81769.t1 |
| chr1.3 | exon | 43270485 | 43270549 | 43270485 | ID=MS.gene81769.t1.exon12;Parent=MS.gene81769.t1 |
| chr1.3 | CDS | 43270485 | 43270549 | 43270485 | ID=cds.MS.gene81769.t1;Parent=MS.gene81769.t1 |
| chr1.3 | exon | 43269621 | 43269819 | 43269621 | ID=MS.gene81769.t1.exon13;Parent=MS.gene81769.t1 |
| chr1.3 | CDS | 43269621 | 43269819 | 43269621 | ID=cds.MS.gene81769.t1;Parent=MS.gene81769.t1 |
| chr1.3 | exon | 43267935 | 43268129 | 43267935 | ID=MS.gene81769.t1.exon14;Parent=MS.gene81769.t1 |
| chr1.3 | CDS | 43267935 | 43268129 | 43267935 | ID=cds.MS.gene81769.t1;Parent=MS.gene81769.t1 |
| chr1.3 | exon | 43267186 | 43267280 | 43267186 | ID=MS.gene81769.t1.exon15;Parent=MS.gene81769.t1 |
| chr1.3 | CDS | 43267186 | 43267280 | 43267186 | ID=cds.MS.gene81769.t1;Parent=MS.gene81769.t1 |
| chr1.3 | exon | 43266946 | 43267081 | 43266946 | ID=MS.gene81769.t1.exon16;Parent=MS.gene81769.t1 |
| chr1.3 | CDS | 43266946 | 43267081 | 43266946 | ID=cds.MS.gene81769.t1;Parent=MS.gene81769.t1 |
| chr1.3 | exon | 43266345 | 43266562 | 43266345 | ID=MS.gene81769.t1.exon17;Parent=MS.gene81769.t1 |
| chr1.3 | CDS | 43266345 | 43266562 | 43266345 | ID=cds.MS.gene81769.t1;Parent=MS.gene81769.t1 |
| chr1.3 | exon | 43265321 | 43265448 | 43265321 | ID=MS.gene81769.t1.exon18;Parent=MS.gene81769.t1 |
| chr1.3 | CDS | 43265321 | 43265448 | 43265321 | ID=cds.MS.gene81769.t1;Parent=MS.gene81769.t1 |
| chr1.3 | exon | 43264380 | 43264801 | 43264380 | ID=MS.gene81769.t1.exon19;Parent=MS.gene81769.t1 |
| chr1.3 | CDS | 43264380 | 43264801 | 43264380 | ID=cds.MS.gene81769.t1;Parent=MS.gene81769.t1 |
| Gene Sequence |
| Protein sequence |
