Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82317.t1 | XP_013468255.1 | 97.6 | 908 | 22 | 0 | 1 | 908 | 1 | 908 | 0.00E+00 | 1762.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82317.t1 | Q09818 | 32.1 | 399 | 234 | 11 | 3 | 375 | 12 | 399 | 1.3e-46 | 189.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82317.t1 | A0A072VKG7 | 97.6 | 908 | 22 | 0 | 1 | 908 | 1 | 908 | 0.0e+00 | 1762.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056452 | MS.gene82317 | 0.816233 | 6.15E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82317.t1 | MTR_1g066970 | 97.577 | 908 | 22 | 0 | 1 | 908 | 1 | 908 | 0.0 | 1832 |
| MS.gene82317.t1 | MTR_4g061180 | 66.019 | 309 | 98 | 5 | 1 | 304 | 1 | 307 | 3.09e-137 | 436 |
| MS.gene82317.t1 | MTR_4g061180 | 37.398 | 369 | 196 | 16 | 565 | 908 | 673 | 1031 | 1.12e-45 | 178 |
| MS.gene82317.t1 | MTR_2g093100 | 72.401 | 279 | 75 | 1 | 1 | 277 | 1 | 279 | 5.73e-136 | 432 |
| MS.gene82317.t1 | MTR_2g093100 | 34.349 | 361 | 208 | 14 | 569 | 908 | 644 | 996 | 1.49e-36 | 149 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82317.t1 | AT5G60170 | 36.741 | 988 | 527 | 30 | 1 | 905 | 1 | 973 | 4.79e-160 | 494 |
| MS.gene82317.t1 | AT5G60170 | 36.538 | 988 | 527 | 31 | 1 | 905 | 1 | 971 | 4.00e-157 | 487 |
| MS.gene82317.t1 | AT3G45630 | 66.558 | 308 | 97 | 3 | 1 | 304 | 1 | 306 | 2.37e-137 | 435 |
| MS.gene82317.t1 | AT3G45630 | 30.749 | 387 | 221 | 16 | 549 | 905 | 606 | 975 | 8.00e-31 | 131 |
| MS.gene82317.t1 | AT3G45630 | 66.558 | 308 | 97 | 3 | 1 | 304 | 1 | 306 | 2.37e-137 | 435 |
| MS.gene82317.t1 | AT3G45630 | 30.749 | 387 | 221 | 16 | 549 | 905 | 606 | 975 | 8.00e-31 | 131 |
| MS.gene82317.t1 | AT2G28540 | 61.059 | 321 | 119 | 3 | 1 | 317 | 1 | 319 | 3.12e-134 | 424 |
| MS.gene82317.t1 | AT2G28540 | 61.059 | 321 | 119 | 3 | 1 | 317 | 1 | 319 | 3.22e-133 | 423 |
| MS.gene82317.t1 | AT5G62910 | 43.333 | 60 | 28 | 1 | 8 | 67 | 251 | 304 | 1.33e-11 | 67.4 |
| MS.gene82317.t1 | AT5G62910 | 43.333 | 60 | 28 | 1 | 8 | 67 | 251 | 304 | 1.33e-11 | 67.4 |
| MS.gene82317.t1 | AT3G48070 | 44.828 | 58 | 26 | 1 | 8 | 65 | 243 | 294 | 2.40e-11 | 66.6 |
| MS.gene82317.t1 | AT3G48070 | 44.828 | 58 | 26 | 1 | 8 | 65 | 243 | 294 | 4.55e-11 | 65.9 |
| MS.gene82317.t1 | AT1G74870 | 49.180 | 61 | 24 | 2 | 2 | 62 | 206 | 259 | 5.02e-11 | 65.1 |
| MS.gene82317.t1 | AT3G48070 | 44.828 | 58 | 26 | 1 | 8 | 65 | 194 | 245 | 6.16e-11 | 65.1 |
Find 207 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCAACCTCGTGTACATAAT+TGG | 0.216432 | 1.3:+46900605 | MS.gene82317:CDS |
| ACTTACATCTAAAGAACTTT+TGG | 0.233420 | 1.3:-46903208 | None:intergenic |
| TTCATTTGCAGGGCTTGTTT+TGG | 0.243269 | 1.3:+46901255 | MS.gene82317:intron |
| AACTCGACCGATTCCTCTTT+AGG | 0.255910 | 1.3:+46904238 | MS.gene82317:CDS |
| CAGCAATCATTTGGGGTTGC+TGG | 0.261328 | 1.3:+46904799 | MS.gene82317:CDS |
| TTTCAGATCATATTGGAAAT+AGG | 0.261331 | 1.3:+46906833 | MS.gene82317:CDS |
| TGCTAATACTAATTCATCTT+TGG | 0.262626 | 1.3:-46901897 | None:intergenic |
| GAAGTATTGAATAATGAAAT+AGG | 0.264396 | 1.3:+46907033 | MS.gene82317:CDS |
| CTGATTTGCAGCAATCATTT+GGG | 0.265234 | 1.3:+46904791 | MS.gene82317:CDS |
| AGACAGGCCACTGAAATAAT+TGG | 0.270957 | 1.3:-46907004 | None:intergenic |
| AATAATTTGAATCGTCCTTC+AGG | 0.272128 | 1.3:+46903123 | MS.gene82317:CDS |
| ATTAGTTGTTCAGTCAATTC+AGG | 0.284421 | 1.3:-46907104 | None:intergenic |
| GCTTCAGATGATGGCTTGAT+TGG | 0.295084 | 1.3:-46904438 | None:intergenic |
| ATTCAACCACACCAGCCTTT+TGG | 0.298993 | 1.3:+46904299 | MS.gene82317:CDS |
| AAGGCTTCCCCGAATGATTC+TGG | 0.299501 | 1.3:-46904480 | None:intergenic |
| AAGCAACCCCTGGCAGGGTT+TGG | 0.309174 | 1.3:-46903793 | None:intergenic |
| CAGTTCAGTAGTAATATTCT+TGG | 0.321542 | 1.3:+46906949 | MS.gene82317:CDS |
| CCAGATGCATAATTCCCTTT+AGG | 0.322792 | 1.3:-46904829 | None:intergenic |
| TCAAGACTTTCAGATCATAT+TGG | 0.327796 | 1.3:+46906826 | MS.gene82317:CDS |
| TTCTGTGAGTACAAGCTTCC+TGG | 0.329107 | 1.3:+46904063 | MS.gene82317:CDS |
| GTGCTATCAGATAAATTTGA+TGG | 0.329880 | 1.3:+46904919 | MS.gene82317:CDS |
| TCTGATTTGCAGCAATCATT+TGG | 0.331891 | 1.3:+46904790 | MS.gene82317:CDS |
| ACTCGACCGATTCCTCTTTA+GGG | 0.334806 | 1.3:+46904239 | MS.gene82317:CDS |
| TTGTAGCACCAATGATTTGT+AGG | 0.340037 | 1.3:-46903101 | None:intergenic |
| GGCAGCTCCATTGCTTGAAC+CGG | 0.342584 | 1.3:-46903387 | None:intergenic |
| AGCAACCCCTGGCAGGGTTT+GGG | 0.345017 | 1.3:-46903792 | None:intergenic |
| TTCATCACGTGCTGGTAATC+TGG | 0.349908 | 1.3:+46903739 | MS.gene82317:CDS |
| ACCTGGACTGATTATTGTCT+TGG | 0.354617 | 1.3:-46904729 | None:intergenic |
| ATTTGATGGAAGTCTGTCTT+TGG | 0.355483 | 1.3:+46904933 | MS.gene82317:CDS |
| AAGTATTGAATAATGAAATA+GGG | 0.358868 | 1.3:+46907034 | MS.gene82317:CDS |
| AAGGTTTGCCCCAGGTTAAA+AGG | 0.359911 | 1.3:-46906724 | None:intergenic |
| AAACTCACTGGAAAATTTAG+AGG | 0.365826 | 1.3:-46904959 | None:intergenic |
| GTTCTATAAGCATCACTTTG+AGG | 0.368135 | 1.3:-46906862 | None:intergenic |
| ACTAGGGCAAGGTGTGTATC+TGG | 0.372035 | 1.3:+46903689 | MS.gene82317:intron |
| GAATGCAGTTGTTCAGAAAA+TGG | 0.376217 | 1.3:-46906922 | None:intergenic |
| TTCATATTTCACTCGGGATT+CGG | 0.378364 | 1.3:+46904195 | MS.gene82317:CDS |
| GAACAGAGTTGTAATAGTTC+TGG | 0.383667 | 1.3:+46906451 | MS.gene82317:CDS |
| TATAATGGAAATGGCTCATA+AGG | 0.385777 | 1.3:+46900318 | MS.gene82317:CDS |
| TTCCTTCCATCTGATGATTT+AGG | 0.390471 | 1.3:-46900554 | None:intergenic |
| TTGAACCGGATTCTTTAATC+TGG | 0.391628 | 1.3:-46903373 | None:intergenic |
| GTGGCTGATGATACATGTTT+AGG | 0.393495 | 1.3:-46903174 | None:intergenic |
| ATTCGTAACCAGAATCATTC+GGG | 0.393709 | 1.3:+46904472 | MS.gene82317:CDS |
| AAAGAGGAATCGGTCGAGTT+AGG | 0.394430 | 1.3:-46904235 | None:intergenic |
| TCAGCAGCTTCCGTGGGCCT+TGG | 0.396088 | 1.3:+46904022 | MS.gene82317:intron |
| TCCTCCACTATTCCCCTACT+AGG | 0.401309 | 1.3:-46906685 | None:intergenic |
| CGGTGCAAGCAACCCCTGGC+AGG | 0.407841 | 1.3:-46903799 | None:intergenic |
| GCGACTGAATTGAGGAAGTA+AGG | 0.414883 | 1.3:-46906743 | None:intergenic |
| CTATGGTATTTGACCCTAGT+AGG | 0.428418 | 1.3:+46906671 | MS.gene82317:CDS |
| TGTATCAAGAATAGACCTTT+CGG | 0.429650 | 1.3:-46903819 | None:intergenic |
| GAAGATGAACTAGTATCCTT+TGG | 0.429995 | 1.3:-46903719 | None:intergenic |
| GCGCAAAGCAGGTGCTTTGA+AGG | 0.432491 | 1.3:-46904701 | None:intergenic |
| AATTCGTAACCAGAATCATT+CGG | 0.433629 | 1.3:+46904471 | MS.gene82317:CDS |
| TGCAGGAAGTGCTGTTGAAT+TGG | 0.437192 | 1.3:-46903408 | None:intergenic |
| GTTTAGGATCATCTGGTGGT+GGG | 0.437738 | 1.3:-46903158 | None:intergenic |
| TCCATCTCTTCGGTACATAT+CGG | 0.437890 | 1.3:-46899842 | None:intergenic |
| CACAATTATATCTTCCCAAA+AGG | 0.441190 | 1.3:-46904314 | None:intergenic |
| ACAATGCGTTCTTTGTCATA+AGG | 0.443225 | 1.3:-46900376 | None:intergenic |
| TTGGCATCATATAATGGAAA+TGG | 0.443228 | 1.3:+46900309 | MS.gene82317:CDS |
| CACAGATCTGTGTATGGTGT+TGG | 0.443926 | 1.3:+46900290 | MS.gene82317:intron |
| AGATTCAATAGTTAAGTTGT+TGG | 0.444149 | 1.3:+46904654 | MS.gene82317:CDS |
| CAAATAACCAGTGGGGAAGT+TGG | 0.446372 | 1.3:+46906974 | MS.gene82317:CDS |
| ATTGATTCCCAAACCCTGCC+AGG | 0.447858 | 1.3:+46903785 | MS.gene82317:CDS |
| ATCAGTCAGGTCCATCTCTT+CGG | 0.447989 | 1.3:-46899852 | None:intergenic |
| CAAAGAACGCATTGTGGCTA+TGG | 0.450857 | 1.3:+46900384 | MS.gene82317:CDS |
| ACCAGTACCCTCACTCTTCA+CGG | 0.451024 | 1.3:-46904545 | None:intergenic |
| TCGATATCTCGTACAGCAAC+GGG | 0.451883 | 1.3:+46900864 | MS.gene82317:CDS |
| CACTTCCTGCAGCCAACTCT+TGG | 0.453295 | 1.3:+46903420 | MS.gene82317:CDS |
| TTTAGGATCATCTGGTGGTG+GGG | 0.458958 | 1.3:-46903157 | None:intergenic |
| GATACATGTTTAGGATCATC+TGG | 0.463183 | 1.3:-46903165 | None:intergenic |
| TATGCATCTGGTGGTTGTAA+TGG | 0.463874 | 1.3:+46904841 | MS.gene82317:CDS |
| CATGTGGTGCGGTGATCTCC+AGG | 0.463912 | 1.3:-46904081 | None:intergenic |
| CGTGGGCCTTGGTCAAGAAA+AGG | 0.470197 | 1.3:+46904033 | MS.gene82317:CDS |
| GATAGCACAGAATTGCTTGA+TGG | 0.470483 | 1.3:-46904904 | None:intergenic |
| AAGAACCAGATTAAAGAATC+CGG | 0.476974 | 1.3:+46903368 | MS.gene82317:intron |
| CCTAAAGGGAATTATGCATC+TGG | 0.477224 | 1.3:+46904829 | MS.gene82317:CDS |
| ATGCAAATGCTTCCCTAAAG+AGG | 0.485653 | 1.3:-46904251 | None:intergenic |
| TGTTTAGGATCATCTGGTGG+TGG | 0.485806 | 1.3:-46903159 | None:intergenic |
| CTCCATCTGTAAATATCAGC+AGG | 0.487534 | 1.3:+46906623 | MS.gene82317:CDS |
| ATAATTTGAATCGTCCTTCA+GGG | 0.488053 | 1.3:+46903124 | MS.gene82317:CDS |
| GTCTTTAGAACTAGATGCAT+GGG | 0.488988 | 1.3:+46904630 | MS.gene82317:CDS |
| GCTTCAGATGCTGATCAGTC+AGG | 0.491128 | 1.3:-46899865 | None:intergenic |
| AGGGAGTACTTTGGAAGGTA+TGG | 0.494301 | 1.3:+46900825 | MS.gene82317:CDS |
| ATGCTTCCCTAAAGAGGAAT+CGG | 0.494776 | 1.3:-46904245 | None:intergenic |
| GGATGTGCATGGCTCATGTT+CGG | 0.498770 | 1.3:+46904135 | MS.gene82317:CDS |
| TGACCCTAGTAGGGGAATAG+TGG | 0.500098 | 1.3:+46906681 | MS.gene82317:CDS |
| TCAATACTTCAGACATAGAC+AGG | 0.502092 | 1.3:-46907020 | None:intergenic |
| TGAAGGTACAGATACACTAT+TGG | 0.504841 | 1.3:-46903885 | None:intergenic |
| TCTTCATTGCGACTGAATTG+AGG | 0.507830 | 1.3:-46906751 | None:intergenic |
| TTGTCTGGCAAAGGAAAACC+TGG | 0.512658 | 1.3:-46904746 | None:intergenic |
| TCTGTAAATATCAGCAGGAT+AGG | 0.517263 | 1.3:+46906628 | MS.gene82317:CDS |
| CTTTCGGTGCAAGCAACCCC+TGG | 0.517643 | 1.3:-46903803 | None:intergenic |
| ATGCTTATAGAACTAATTCG+AGG | 0.518286 | 1.3:+46906872 | MS.gene82317:CDS |
| TTGCTGGACATGATCCTAAA+GGG | 0.518964 | 1.3:+46904815 | MS.gene82317:CDS |
| ATAAATCCATTACCAAGAGT+TGG | 0.523397 | 1.3:-46903432 | None:intergenic |
| GCTCATGCTTCAAGTCCACC+TGG | 0.528672 | 1.3:+46906379 | MS.gene82317:CDS |
| CATCTGAAGCCGTGCAAATG+TGG | 0.529368 | 1.3:+46899878 | MS.gene82317:CDS |
| AATGATTCCAATTATTTCAG+TGG | 0.530132 | 1.3:+46906997 | MS.gene82317:CDS |
| TCCGATATGTACCGAAGAGA+TGG | 0.530600 | 1.3:+46899841 | MS.gene82317:CDS |
| CCTCCACTATTCCCCTACTA+GGG | 0.530781 | 1.3:-46906684 | None:intergenic |
| AGTAGGGTCCTACAAATCAT+TGG | 0.533965 | 1.3:+46903093 | MS.gene82317:CDS |
| AACTTATTCAGCAGCTTCCG+TGG | 0.534099 | 1.3:+46904015 | MS.gene82317:intron |
| ATTATATCTTCCCAAAAGGC+TGG | 0.535132 | 1.3:-46904310 | None:intergenic |
| ATCTTCCCAAAAGGCTGGTG+TGG | 0.535708 | 1.3:-46904305 | None:intergenic |
| AAAGAATCCGGTTCAAGCAA+TGG | 0.536155 | 1.3:+46903380 | MS.gene82317:CDS |
| AATCATTCCAACTTCCCCAC+TGG | 0.536419 | 1.3:-46906981 | None:intergenic |
| ATCAAGCCATCATCTGAAGC+AGG | 0.536789 | 1.3:+46904441 | MS.gene82317:CDS |
| AGTATTGAATAATGAAATAG+GGG | 0.537525 | 1.3:+46907035 | MS.gene82317:CDS |
| GGTGCAAGCAACCCCTGGCA+GGG | 0.537936 | 1.3:-46903798 | None:intergenic |
| TTGATTCCCAAACCCTGCCA+GGG | 0.540424 | 1.3:+46903786 | MS.gene82317:CDS |
| CAGGGGTTGCTTGCACCGAA+AGG | 0.541133 | 1.3:+46903804 | MS.gene82317:CDS |
| AATTAGTATTAGCATTTGCA+AGG | 0.541684 | 1.3:+46901906 | MS.gene82317:CDS |
| TTGCTTGATGGGAAAGCGTA+TGG | 0.541973 | 1.3:-46904892 | None:intergenic |
| GTTGCTGGACATGATCCTAA+AGG | 0.542234 | 1.3:+46904814 | MS.gene82317:CDS |
| ACCTCATAGCCACATTTGCA+CGG | 0.542997 | 1.3:-46899887 | None:intergenic |
| ATGGTGTTGGCATCATATAA+TGG | 0.543359 | 1.3:+46900303 | MS.gene82317:CDS |
| TATGGTATTTGACCCTAGTA+GGG | 0.545322 | 1.3:+46906672 | MS.gene82317:CDS |
| CTTGATTGGCTTAGATTCTG+AGG | 0.546144 | 1.3:-46904424 | None:intergenic |
| TAACAAGGCAGTTTCAAGTC+GGG | 0.547611 | 1.3:+46904114 | MS.gene82317:CDS |
| GTCGATATCTCGTACAGCAA+CGG | 0.548555 | 1.3:+46900863 | MS.gene82317:CDS |
| TGTTGAGTTCAAGAATCCTA+TGG | 0.549167 | 1.3:+46906654 | MS.gene82317:CDS |
| TTGAAGATTCATATTTCACT+CGG | 0.550404 | 1.3:+46904188 | MS.gene82317:CDS |
| TGTCTTTAGAACTAGATGCA+TGG | 0.550520 | 1.3:+46904629 | MS.gene82317:CDS |
| AGGTACAGATACACTATTGG+TGG | 0.551077 | 1.3:-46903882 | None:intergenic |
| CATTACCAAGAGTTGGCTGC+AGG | 0.551503 | 1.3:-46903425 | None:intergenic |
| GCAGCGATAATTTAGCCTCC+AGG | 0.551527 | 1.3:+46904383 | MS.gene82317:CDS |
| CCATGCATGACAATACTTTG+TGG | 0.552172 | 1.3:-46901280 | None:intergenic |
| TGATTTGCAGCAATCATTTG+GGG | 0.553932 | 1.3:+46904792 | MS.gene82317:CDS |
| ACAATGAGGTGAATAATGCC+TGG | 0.554007 | 1.3:-46904401 | None:intergenic |
| TTAGGATCATCTGGTGGTGG+GGG | 0.555822 | 1.3:-46903156 | None:intergenic |
| CTTCAACGTAGGGAGTACTT+TGG | 0.557460 | 1.3:+46900816 | MS.gene82317:CDS |
| TCCAAGACAATAATCAGTCC+AGG | 0.558162 | 1.3:+46904728 | MS.gene82317:CDS |
| GTACTTTGGAAGGTATGGAA+AGG | 0.558874 | 1.3:+46900830 | MS.gene82317:CDS |
| GCAGGCAGGACAACGGCCCT+CGG | 0.559341 | 1.3:-46900347 | None:intergenic |
| ATAGCACAGAATTGCTTGAT+GGG | 0.561523 | 1.3:-46904903 | None:intergenic |
| TCATAAGGTGAACGGCAGGC+AGG | 0.563242 | 1.3:-46900361 | None:intergenic |
| AGCCTAAATCATCAGATGGA+AGG | 0.565652 | 1.3:+46900552 | MS.gene82317:CDS |
| TCTTGGTTCAAATAACCAGT+GGG | 0.566345 | 1.3:+46906966 | MS.gene82317:CDS |
| TGGTTCAGATGTTGATAACA+AGG | 0.567738 | 1.3:+46904564 | MS.gene82317:CDS |
| GAGAAGACCGTGAAGAGTGA+GGG | 0.567760 | 1.3:+46904538 | MS.gene82317:CDS |
| TTTGTCATAAGGTGAACGGC+AGG | 0.574302 | 1.3:-46900365 | None:intergenic |
| TCTTCATCTGCAAGGTGAAG+AGG | 0.574669 | 1.3:-46900632 | None:intergenic |
| AGTTCATCTTCATCACGTGC+TGG | 0.577681 | 1.3:+46903731 | MS.gene82317:CDS |
| TTAAAGCCTAAATCATCAGA+TGG | 0.577945 | 1.3:+46900548 | MS.gene82317:CDS |
| TTGAACAAACATCACATTGG+TGG | 0.578775 | 1.3:+46903911 | MS.gene82317:CDS |
| AACTTGATATTCTCATAACT+AGG | 0.580208 | 1.3:-46907075 | None:intergenic |
| CTACTAGGGTCAAATACCAT+AGG | 0.581897 | 1.3:-46906670 | None:intergenic |
| TGAAGATTCATATTTCACTC+GGG | 0.583365 | 1.3:+46904189 | MS.gene82317:CDS |
| GTAGGGGAATAGTGGAGGAA+AGG | 0.584951 | 1.3:+46906689 | MS.gene82317:CDS |
| CTTAGATTCTGAGGACAATG+AGG | 0.586654 | 1.3:-46904415 | None:intergenic |
| AACTCACATCTTCATCTGCA+AGG | 0.587859 | 1.3:-46900640 | None:intergenic |
| AGAGAAGACCGTGAAGAGTG+AGG | 0.588042 | 1.3:+46904537 | MS.gene82317:CDS |
| GAGGAAGTAAGGTTTGCCCC+AGG | 0.593890 | 1.3:-46906732 | None:intergenic |
| TACTAGAAGGTAGATCATTG+AGG | 0.594731 | 1.3:+46901161 | MS.gene82317:CDS |
| CCACAAAGTATTGTCATGCA+TGG | 0.596103 | 1.3:+46901280 | MS.gene82317:CDS |
| CCACCAGCTACTTCAACGTA+GGG | 0.597126 | 1.3:+46900806 | MS.gene82317:intron |
| AAATGATTGCTGCAAATCAG+AGG | 0.597628 | 1.3:-46904788 | None:intergenic |
| AGGAAGCTTGTACTCACAGA+AGG | 0.598102 | 1.3:-46904061 | None:intergenic |
| GGTTCAGTAAAATATTCAGA+AGG | 0.600729 | 1.3:-46904499 | None:intergenic |
| TGTTTGTATCTACATGATCA+TGG | 0.601158 | 1.3:+46901854 | MS.gene82317:CDS |
| CTGCTGATATTTACAGATGG+AGG | 0.601283 | 1.3:-46906622 | None:intergenic |
| GGTGCTTTGAAGGATGTGTA+TGG | 0.601951 | 1.3:-46904691 | None:intergenic |
| ACTTATTCAGCAGCTTCCGT+GGG | 0.602554 | 1.3:+46904016 | MS.gene82317:intron |
| GTTTCAAGTCGGGATGTGCA+TGG | 0.610826 | 1.3:+46904124 | MS.gene82317:CDS |
| TGTATCTGGCAGTCTTCCAA+AGG | 0.610994 | 1.3:+46903703 | MS.gene82317:CDS |
| ACCGTGAAGAGTGAGGGTAC+TGG | 0.611276 | 1.3:+46904544 | MS.gene82317:CDS |
| ATCCTGCTGATATTTACAGA+TGG | 0.611333 | 1.3:-46906625 | None:intergenic |
| CTAACAAGGCAGTTTCAAGT+CGG | 0.612322 | 1.3:+46904113 | MS.gene82317:CDS |
| CTATGGCAGCTAACTGTCGA+AGG | 0.612354 | 1.3:+46900401 | MS.gene82317:CDS |
| TGATGTTTGTTCAACTCTGA+AGG | 0.613376 | 1.3:-46903902 | None:intergenic |
| TCCACCAGCTACTTCAACGT+AGG | 0.615567 | 1.3:+46900805 | MS.gene82317:intron |
| CTCATGCTTCAAGTCCACCT+GGG | 0.617092 | 1.3:+46906380 | MS.gene82317:CDS |
| CCCTAGTAGGGGAATAGTGG+AGG | 0.622353 | 1.3:+46906684 | MS.gene82317:CDS |
| GTTCTTTGTCATAAGGTGAA+CGG | 0.623891 | 1.3:-46900369 | None:intergenic |
| AACGTAGGGAGTACTTTGGA+AGG | 0.624800 | 1.3:+46900820 | MS.gene82317:CDS |
| GGCTCATAAGGATGAAACCG+AGG | 0.625328 | 1.3:+46900330 | MS.gene82317:CDS |
| AACTCACTGGAAAATTTAGA+GGG | 0.627206 | 1.3:-46904958 | None:intergenic |
| TGATTCCCAAACCCTGCCAG+GGG | 0.628214 | 1.3:+46903787 | MS.gene82317:CDS |
| AACAAGGTTTCTTCAGACGT+CGG | 0.630644 | 1.3:+46904580 | MS.gene82317:CDS |
| TGCTTGATGGGAAAGCGTAT+GGG | 0.632136 | 1.3:-46904891 | None:intergenic |
| TTCTTGGTTCAAATAACCAG+TGG | 0.634073 | 1.3:+46906965 | MS.gene82317:CDS |
| CTGTCTGACATTGCAAACCC+AGG | 0.638003 | 1.3:-46906397 | None:intergenic |
| GATCAACAACAACACGGCAA+AGG | 0.646466 | 1.3:+46904361 | MS.gene82317:CDS |
| AAACAGTCTCTATTGCTGCA+AGG | 0.648038 | 1.3:-46901836 | None:intergenic |
| TTGTTAGTATTCAAATCATG+TGG | 0.654500 | 1.3:-46904097 | None:intergenic |
| ACTCTCCCGCGAGAAAACCC+AGG | 0.659154 | 1.3:-46906427 | None:intergenic |
| AAAGGGAATTATGCATCTGG+TGG | 0.660201 | 1.3:+46904832 | MS.gene82317:CDS |
| GTGAACGGCAGGCAGGACAA+CGG | 0.664000 | 1.3:-46900354 | None:intergenic |
| GCTCATAAGGATGAAACCGA+GGG | 0.665241 | 1.3:+46900331 | MS.gene82317:CDS |
| TCTGACATTGCAAACCCAGG+TGG | 0.667610 | 1.3:-46906394 | None:intergenic |
| ATGGTATTTGACCCTAGTAG+GGG | 0.670671 | 1.3:+46906673 | MS.gene82317:CDS |
| GCCGTGCAAATGTGGCTATG+AGG | 0.674534 | 1.3:+46899886 | MS.gene82317:CDS |
| ATGTCAGACAGAATACCACC+TGG | 0.679445 | 1.3:+46906409 | MS.gene82317:CDS |
| ACATGATTTGAATACTAACA+AGG | 0.682637 | 1.3:+46904099 | MS.gene82317:CDS |
| GACTGTGATCAACAACAACA+CGG | 0.682869 | 1.3:+46904355 | MS.gene82317:CDS |
| TCATGCATGGCTCAGAAATG+TGG | 0.685600 | 1.3:+46901293 | MS.gene82317:CDS |
| GAGTTGAACAAACATCACAT+TGG | 0.697798 | 1.3:+46903908 | MS.gene82317:CDS |
| CTTGGTTCAAATAACCAGTG+GGG | 0.702385 | 1.3:+46906967 | MS.gene82317:CDS |
| TTATGACAAAGAACGCATTG+TGG | 0.704239 | 1.3:+46900378 | MS.gene82317:CDS |
| TTCGTAACCAGAATCATTCG+GGG | 0.706891 | 1.3:+46904473 | MS.gene82317:CDS |
| ACAGATGGAGGAGCATACTG+TGG | 0.707322 | 1.3:-46906610 | None:intergenic |
| GCAGTCCAATTATGTACACG+AGG | 0.715517 | 1.3:-46900610 | None:intergenic |
| TGTCAGACAGAATACCACCT+GGG | 0.740545 | 1.3:+46906410 | MS.gene82317:CDS |
| AGTATTCAAATCATGTGGTG+CGG | 0.743229 | 1.3:-46904092 | None:intergenic |
| CTCCCGCGAGAAAACCCAGG+TGG | 0.744790 | 1.3:-46906424 | None:intergenic |
| GTATTGAATAATGAAATAGG+GGG | 0.745932 | 1.3:+46907036 | MS.gene82317:CDS |
| ATGAGGTGAATAATGCCTGG+AGG | 0.749776 | 1.3:-46904398 | None:intergenic |
| ACATGTTTAGGATCATCTGG+TGG | 0.761344 | 1.3:-46903162 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 46899815 | 46907113 | 46899815 | ID=MS.gene82317 |
| chr1.3 | mRNA | 46899815 | 46907113 | 46899815 | ID=MS.gene82317.t1;Parent=MS.gene82317 |
| chr1.3 | exon | 46899815 | 46899907 | 46899815 | ID=MS.gene82317.t1.exon1;Parent=MS.gene82317.t1 |
| chr1.3 | CDS | 46899815 | 46899907 | 46899815 | ID=cds.MS.gene82317.t1;Parent=MS.gene82317.t1 |
| chr1.3 | exon | 46900295 | 46900422 | 46900295 | ID=MS.gene82317.t1.exon2;Parent=MS.gene82317.t1 |
| chr1.3 | CDS | 46900295 | 46900422 | 46900295 | ID=cds.MS.gene82317.t1;Parent=MS.gene82317.t1 |
| chr1.3 | exon | 46900508 | 46900655 | 46900508 | ID=MS.gene82317.t1.exon3;Parent=MS.gene82317.t1 |
| chr1.3 | CDS | 46900508 | 46900655 | 46900508 | ID=cds.MS.gene82317.t1;Parent=MS.gene82317.t1 |
| chr1.3 | exon | 46900813 | 46900922 | 46900813 | ID=MS.gene82317.t1.exon4;Parent=MS.gene82317.t1 |
| chr1.3 | CDS | 46900813 | 46900922 | 46900813 | ID=cds.MS.gene82317.t1;Parent=MS.gene82317.t1 |
| chr1.3 | exon | 46901099 | 46901182 | 46901099 | ID=MS.gene82317.t1.exon5;Parent=MS.gene82317.t1 |
| chr1.3 | CDS | 46901099 | 46901182 | 46901099 | ID=cds.MS.gene82317.t1;Parent=MS.gene82317.t1 |
| chr1.3 | exon | 46901266 | 46901314 | 46901266 | ID=MS.gene82317.t1.exon6;Parent=MS.gene82317.t1 |
| chr1.3 | CDS | 46901266 | 46901314 | 46901266 | ID=cds.MS.gene82317.t1;Parent=MS.gene82317.t1 |
| chr1.3 | exon | 46901836 | 46901927 | 46901836 | ID=MS.gene82317.t1.exon7;Parent=MS.gene82317.t1 |
| chr1.3 | CDS | 46901836 | 46901927 | 46901836 | ID=cds.MS.gene82317.t1;Parent=MS.gene82317.t1 |
| chr1.3 | exon | 46903092 | 46903224 | 46903092 | ID=MS.gene82317.t1.exon8;Parent=MS.gene82317.t1 |
| chr1.3 | CDS | 46903092 | 46903224 | 46903092 | ID=cds.MS.gene82317.t1;Parent=MS.gene82317.t1 |
| chr1.3 | exon | 46903371 | 46903441 | 46903371 | ID=MS.gene82317.t1.exon9;Parent=MS.gene82317.t1 |
| chr1.3 | CDS | 46903371 | 46903441 | 46903371 | ID=cds.MS.gene82317.t1;Parent=MS.gene82317.t1 |
| chr1.3 | exon | 46903694 | 46903947 | 46903694 | ID=MS.gene82317.t1.exon10;Parent=MS.gene82317.t1 |
| chr1.3 | CDS | 46903694 | 46903947 | 46903694 | ID=cds.MS.gene82317.t1;Parent=MS.gene82317.t1 |
| chr1.3 | exon | 46904029 | 46904973 | 46904029 | ID=MS.gene82317.t1.exon11;Parent=MS.gene82317.t1 |
| chr1.3 | CDS | 46904029 | 46904973 | 46904029 | ID=cds.MS.gene82317.t1;Parent=MS.gene82317.t1 |
| chr1.3 | exon | 46906371 | 46906472 | 46906371 | ID=MS.gene82317.t1.exon12;Parent=MS.gene82317.t1 |
| chr1.3 | CDS | 46906371 | 46906472 | 46906371 | ID=cds.MS.gene82317.t1;Parent=MS.gene82317.t1 |
| chr1.3 | exon | 46906596 | 46907113 | 46906596 | ID=MS.gene82317.t1.exon13;Parent=MS.gene82317.t1 |
| chr1.3 | CDS | 46906596 | 46907113 | 46906596 | ID=cds.MS.gene82317.t1;Parent=MS.gene82317.t1 |
| Gene Sequence |
| Protein sequence |
