Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82457.t1 | XP_003612488.1 | 100 | 32 | 0 | 0 | 1 | 32 | 1 | 32 | 3.10E-09 | 72 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82457.t1 | G7K414 | 100.0 | 32 | 0 | 0 | 1 | 32 | 1 | 32 | 2.3e-09 | 72.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058592 | MS.gene82457 | 0.827881 | 1.22E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82457.t1 | MTR_5g025570 | 94.475 | 181 | 1 | 3 | 1 | 180 | 1 | 173 | 5.19e-98 | 281 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 97 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGGGTATGCCCCTGGTGG+TGG | 0.283422 | 5.2:-16155193 | None:intergenic |
| CACTATGGACATGGAGGATA+TGG | 0.292409 | 5.2:+16156050 | MS.gene82457:CDS |
| GGGTATGCCCCTGGTGGTGG+TGG | 0.311856 | 5.2:-16155190 | None:intergenic |
| TCACATTTAGCTCATGGATT+AGG | 0.315617 | 5.2:+16155136 | MS.gene82457:CDS |
| AAATTTAAGCATGGAAAGTT+TGG | 0.322334 | 5.2:+16156140 | MS.gene82457:CDS |
| GCTGGTGCAGCTGCTGCATA+TGG | 0.326035 | 5.2:+16156005 | MS.gene82457:CDS |
| CATGCCGGGCACGCCGGGCA+CGG | 0.336722 | 5.2:+16155951 | MS.gene82457:CDS |
| CACGCCGGGCACGGTGCTAT+GGG | 0.345589 | 5.2:+16155960 | MS.gene82457:CDS |
| AGCACCGTGCCCGGCGTGCC+CGG | 0.346545 | 5.2:-16155955 | None:intergenic |
| TTGGAAAGCATGGCATGTTC+AGG | 0.355226 | 5.2:+16156159 | MS.gene82457:CDS |
| GCACGCCGGGCACGGTGCTA+TGG | 0.358757 | 5.2:+16155959 | MS.gene82457:CDS |
| CGCCGGGCACGGTGCTATGG+GGG | 0.359872 | 5.2:+16155962 | MS.gene82457:CDS |
| GGTGGTCATGGTTACCCACC+TGG | 0.364443 | 5.2:+16155160 | MS.gene82457:CDS |
| GGGTAGCCATGTCCGGGTGG+TGG | 0.368296 | 5.2:-16155211 | None:intergenic |
| GGTGGTGGTGGGTAGGCCCC+AGG | 0.370809 | 5.2:-16155178 | None:intergenic |
| TGCTTTATATCAGGGCCGTA+TGG | 0.376421 | 5.2:+16155927 | MS.gene82457:intron |
| GGAATAGGTGGATTGATTGC+TGG | 0.398257 | 5.2:+16155987 | MS.gene82457:CDS |
| AAGTTCAAGCATGGAAAATT+CGG | 0.401961 | 5.2:+16156107 | MS.gene82457:CDS |
| ACGCCGGGCACGGTGCTATG+GGG | 0.402909 | 5.2:+16155961 | MS.gene82457:CDS |
| CATGTTGCCCATGGCCACTA+TGG | 0.403589 | 5.2:+16156035 | MS.gene82457:CDS |
| GGTGGTGGGTAGGCCCCAGG+TGG | 0.411322 | 5.2:-16155175 | None:intergenic |
| CATGCTTGAATTTCCCATGA+TGG | 0.412014 | 5.2:-16156082 | None:intergenic |
| TGCCCCTGGTGGTGGTGGGT+AGG | 0.417505 | 5.2:-16155185 | None:intergenic |
| CCGGGTGGTGGGTATGCCCC+TGG | 0.428056 | 5.2:-16155199 | None:intergenic |
| GGTATGCCCCTGGTGGTGGT+GGG | 0.431259 | 5.2:-16155189 | None:intergenic |
| ATGTGGAGGGTAGCCATGTC+CGG | 0.433495 | 5.2:-16155218 | None:intergenic |
| CAGGGCCGTATGGGCATGCC+GGG | 0.434552 | 5.2:+16155937 | MS.gene82457:intron |
| GTGGTCATGGTTACCCACCT+GGG | 0.435211 | 5.2:+16155161 | MS.gene82457:CDS |
| ATGGGCATGCCGGGCACGCC+GGG | 0.435871 | 5.2:+16155946 | MS.gene82457:CDS |
| GGTAGCCATGTCCGGGTGGT+GGG | 0.436306 | 5.2:-16155210 | None:intergenic |
| AGCAGAAGGACCGGGATATC+CGG | 0.447082 | 5.2:-16155338 | None:intergenic |
| CTCCATGTCCATAGTGGCCA+TGG | 0.447849 | 5.2:-16156043 | None:intergenic |
| ATGCTTGAATTTCCCATGAT+GGG | 0.448590 | 5.2:-16156081 | None:intergenic |
| GGCATGTGGAGCAGAAGGAC+CGG | 0.451005 | 5.2:-16155347 | None:intergenic |
| GGAGGGTAACCGCCAGGAGG+GGG | 0.468853 | 5.2:-16155268 | None:intergenic |
| GGGGCCTACCCACCACCACC+AGG | 0.484027 | 5.2:+16155181 | MS.gene82457:CDS |
| TATCCACCTGCCGGATATCC+CGG | 0.485059 | 5.2:+16155328 | MS.gene82457:CDS |
| CAGGAGGGTAACCGCCAGGA+GGG | 0.485756 | 5.2:-16155270 | None:intergenic |
| CATGGTGGTTATCCTCCTGC+TGG | 0.491425 | 5.2:+16155304 | MS.gene82457:CDS |
| TATGGGCATGCCGGGCACGC+CGG | 0.491614 | 5.2:+16155945 | MS.gene82457:CDS |
| CATGGAAAATTCGGCAAGCA+CGG | 0.491615 | 5.2:+16156116 | MS.gene82457:CDS |
| GCGTGCCCGGCATGCCCATA+CGG | 0.492130 | 5.2:-16155942 | None:intergenic |
| CCTCCTGCTGGATATGCTCA+TGG | 0.498570 | 5.2:+16155286 | MS.gene82457:CDS |
| GCCGGGCACGGTGCTATGGG+GGG | 0.502148 | 5.2:+16155963 | MS.gene82457:CDS |
| CCTGGCGGTTACCCTCCTGC+TGG | 0.514812 | 5.2:+16155274 | MS.gene82457:CDS |
| GCATGTGGAGCAGAAGGACC+GGG | 0.515081 | 5.2:-16155346 | None:intergenic |
| TATGGTCACATGCCCCATCA+TGG | 0.516450 | 5.2:+16156068 | MS.gene82457:CDS |
| TGATCTGAAAACATGGGAGG+TGG | 0.521645 | 5.2:+16155073 | None:intergenic |
| TCAGGGCCGTATGGGCATGC+CGG | 0.522047 | 5.2:+16155936 | MS.gene82457:intron |
| AGCATGGCATGTTCAGGAAG+TGG | 0.525395 | 5.2:+16156165 | MS.gene82457:CDS |
| CATGGCTACCCTCCACATCA+AGG | 0.525446 | 5.2:+16155223 | MS.gene82457:CDS |
| CCTTCTGCTCCACATGCCCC+AGG | 0.528696 | 5.2:+16155352 | MS.gene82457:CDS |
| CATGGAAAGTTTGGAAAGCA+TGG | 0.533910 | 5.2:+16156149 | MS.gene82457:CDS |
| CATATCCTCCATGTCCATAG+TGG | 0.534760 | 5.2:-16156049 | None:intergenic |
| CATTTAGCTCATGGATTAGG+TGG | 0.541299 | 5.2:+16155139 | MS.gene82457:CDS |
| AGGAGGGTAACCGCCAGGAG+GGG | 0.545618 | 5.2:-16155269 | None:intergenic |
| GTGGTGGGTAGGCCCCAGGT+GGG | 0.548929 | 5.2:-16155174 | None:intergenic |
| ATGGAAAATTCGGCAAGCAC+GGG | 0.549782 | 5.2:+16156117 | MS.gene82457:CDS |
| CCTGCTGGTTATCCACCTGC+CGG | 0.550235 | 5.2:+16155319 | MS.gene82457:CDS |
| GCATACCCACCACCCGGACA+TGG | 0.552084 | 5.2:+16155205 | MS.gene82457:CDS |
| CATGGATTAGGTGGTGGTCA+TGG | 0.556549 | 5.2:+16155148 | MS.gene82457:CDS |
| CCAGCAGGAGGGTAACCGCC+AGG | 0.558343 | 5.2:-16155274 | None:intergenic |
| GCTTTATATCAGGGCCGTAT+GGG | 0.561631 | 5.2:+16155928 | MS.gene82457:intron |
| TTAGCTCATGGATTAGGTGG+TGG | 0.561711 | 5.2:+16155142 | MS.gene82457:CDS |
| ATGGTCACATGCCCCATCAT+GGG | 0.561810 | 5.2:+16156069 | MS.gene82457:CDS |
| GGAATCATACCTGGGGCATG+TGG | 0.566157 | 5.2:-16155361 | None:intergenic |
| CCGGCAGGTGGATAACCAGC+AGG | 0.567930 | 5.2:-16155319 | None:intergenic |
| GAAGGACCGGGATATCCGGC+AGG | 0.573088 | 5.2:-16155334 | None:intergenic |
| CCTGGGGCATGTGGAGCAGA+AGG | 0.573810 | 5.2:-16155352 | None:intergenic |
| CCAGGGGCATACCCACCACC+CGG | 0.575162 | 5.2:+16155199 | MS.gene82457:CDS |
| TGTGGAGGGTAGCCATGTCC+GGG | 0.580642 | 5.2:-16155217 | None:intergenic |
| CCACCATGAGCATATCCAGC+AGG | 0.580843 | 5.2:-16155289 | None:intergenic |
| ATCATGGGAAATTCAAGCAT+GGG | 0.581137 | 5.2:+16156084 | MS.gene82457:CDS |
| TGCTTGAATTTCCCATGATG+GGG | 0.587130 | 5.2:-16156080 | None:intergenic |
| ATGGCTACCCTCCACATCAA+GGG | 0.587524 | 5.2:+16155224 | MS.gene82457:CDS |
| CATCATGGGAAATTCAAGCA+TGG | 0.592273 | 5.2:+16156083 | MS.gene82457:CDS |
| GGCCTACCCACCACCACCAG+GGG | 0.594364 | 5.2:+16155183 | MS.gene82457:CDS |
| GGGCCTACCCACCACCACCA+GGG | 0.597331 | 5.2:+16155182 | MS.gene82457:CDS |
| TGGTCATGGTTACCCACCTG+GGG | 0.598226 | 5.2:+16155162 | MS.gene82457:CDS |
| AAGCATGGGAAGTTCAAGCA+TGG | 0.606900 | 5.2:+16156098 | MS.gene82457:CDS |
| TCCATGTCCATAGTGGCCAT+GGG | 0.612001 | 5.2:-16156042 | None:intergenic |
| GGACCGGGATATCCGGCAGG+TGG | 0.617679 | 5.2:-16155331 | None:intergenic |
| AATGATGAATCTGCTGACAA+AGG | 0.619466 | 5.2:+16155106 | MS.gene82457:CDS |
| GCCCATGGCCACTATGGACA+TGG | 0.619589 | 5.2:+16156041 | MS.gene82457:CDS |
| TGGCTACCCTCCACATCAAG+GGG | 0.619742 | 5.2:+16155225 | MS.gene82457:CDS |
| GGTGGTGGGTATGCCCCTGG+TGG | 0.622315 | 5.2:-16155196 | None:intergenic |
| CATAGTGGCCATGGGCAACA+TGG | 0.622543 | 5.2:-16156034 | None:intergenic |
| CCATGAGCATATCCAGCAGG+AGG | 0.626734 | 5.2:-16155286 | None:intergenic |
| GCAGGAGGGTAACCGCCAGG+AGG | 0.629489 | 5.2:-16155271 | None:intergenic |
| GGTGCTCACCATGTTGCCCA+TGG | 0.633072 | 5.2:+16156026 | MS.gene82457:CDS |
| GGAGGGTAGCCATGTCCGGG+TGG | 0.648466 | 5.2:-16155214 | None:intergenic |
| CATGAGCATATCCAGCAGGA+GGG | 0.679269 | 5.2:-16155285 | None:intergenic |
| GCAGGTGGATAACCAGCAGG+AGG | 0.685003 | 5.2:-16155316 | None:intergenic |
| CATGGCCACTATGGACATGG+AGG | 0.688261 | 5.2:+16156044 | MS.gene82457:CDS |
| CCTGCTGGATATGCTCATGG+TGG | 0.690500 | 5.2:+16155289 | MS.gene82457:CDS |
| AAGCACGGGAAATTTAAGCA+TGG | 0.701501 | 5.2:+16156131 | MS.gene82457:CDS |
| GGCTACCCTCCACATCAAGG+GGG | 0.778295 | 5.2:+16155226 | MS.gene82457:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTAAAAATTAAGAATGA+AGG | - | chr5.2:16155386-16155405 | None:intergenic | 10.0% |
| !! | TATTAAAAATTAAGAATGAA+GGG | - | chr5.2:16155385-16155404 | None:intergenic | 10.0% |
| !!! | ATTTTGATTATAAATGTGAT+CGG | - | chr5.2:16155558-16155577 | None:intergenic | 15.0% |
| ! | AAATTTAAGCATGGAAAGTT+TGG | + | chr5.2:16156140-16156159 | MS.gene82457:CDS | 25.0% |
| ! | AAGAAGAAAAACTTTCAAAC+AGG | - | chr5.2:16155866-16155885 | None:intergenic | 25.0% |
| ! | ATAAGAAAATTTCAAACGCA+TGG | - | chr5.2:16155627-16155646 | None:intergenic | 25.0% |
| !!! | GAAAATTTTGATGCTACTTT+AGG | + | chr5.2:16155471-16155490 | MS.gene82457:intron | 25.0% |
| AACTTCTCTGCTTTATATCA+GGG | + | chr5.2:16155919-16155938 | MS.gene82457:intron | 30.0% | |
| AAGTTCAAGCATGGAAAATT+CGG | + | chr5.2:16156107-16156126 | MS.gene82457:CDS | 30.0% | |
| AGGTAATGTATCAGTTGAAT+AGG | - | chr5.2:16155846-16155865 | None:intergenic | 30.0% | |
| !!! | TAGTTTTGAGAATGTTACTG+AGG | - | chr5.2:16155755-16155774 | None:intergenic | 30.0% |
| AATGATGAATCTGCTGACAA+AGG | + | chr5.2:16155106-16155125 | MS.gene82457:CDS | 35.0% | |
| ATCATGGGAAATTCAAGCAT+GGG | + | chr5.2:16156084-16156103 | MS.gene82457:CDS | 35.0% | |
| ATGCTTGAATTTCCCATGAT+GGG | - | chr5.2:16156084-16156103 | None:intergenic | 35.0% | |
| CAACTTCTCTGCTTTATATC+AGG | + | chr5.2:16155918-16155937 | MS.gene82457:intron | 35.0% | |
| CTGATATAAAGCAGAGAAGT+TGG | - | chr5.2:16155920-16155939 | None:intergenic | 35.0% | |
| GCTCAAGTTAGTTGAGTTAT+TGG | + | chr5.2:16155505-16155524 | MS.gene82457:intron | 35.0% | |
| ! | TCACATTTAGCTCATGGATT+AGG | + | chr5.2:16155136-16155155 | MS.gene82457:CDS | 35.0% |
| !! | GTTTTCTCACATTTAGCTCA+TGG | + | chr5.2:16155130-16155149 | MS.gene82457:CDS | 35.0% |
| AAGCACGGGAAATTTAAGCA+TGG | + | chr5.2:16156131-16156150 | MS.gene82457:CDS | 40.0% | |
| AATGAAGGGAATCATACCTG+GGG | - | chr5.2:16155371-16155390 | None:intergenic | 40.0% | |
| AGAATGAAGGGAATCATACC+TGG | - | chr5.2:16155373-16155392 | None:intergenic | 40.0% | |
| CATCATGGGAAATTCAAGCA+TGG | + | chr5.2:16156083-16156102 | MS.gene82457:CDS | 40.0% | |
| CATGCTTGAATTTCCCATGA+TGG | - | chr5.2:16156085-16156104 | None:intergenic | 40.0% | |
| CATGGAAAGTTTGGAAAGCA+TGG | + | chr5.2:16156149-16156168 | MS.gene82457:CDS | 40.0% | |
| GAATGAAGGGAATCATACCT+GGG | - | chr5.2:16155372-16155391 | None:intergenic | 40.0% | |
| TGCTTGAATTTCCCATGATG+GGG | - | chr5.2:16156083-16156102 | None:intergenic | 40.0% | |
| ! | AAGCAGAGAAGTTGGTTTAG+TGG | - | chr5.2:16155912-16155931 | None:intergenic | 40.0% |
| !! | CATTTAGCTCATGGATTAGG+TGG | + | chr5.2:16155139-16155158 | MS.gene82457:CDS | 40.0% |
| !! | GCTACTTTAGGCTTTTGAGT+TGG | + | chr5.2:16155483-16155502 | MS.gene82457:intron | 40.0% |
| AAGCATGGGAAGTTCAAGCA+TGG | + | chr5.2:16156098-16156117 | MS.gene82457:CDS | 45.0% | |
| ATGGAAAATTCGGCAAGCAC+GGG | + | chr5.2:16156117-16156136 | MS.gene82457:CDS | 45.0% | |
| CACTATGGACATGGAGGATA+TGG | + | chr5.2:16156050-16156069 | MS.gene82457:CDS | 45.0% | |
| CATATCCTCCATGTCCATAG+TGG | - | chr5.2:16156052-16156071 | None:intergenic | 45.0% | |
| CATGGAAAATTCGGCAAGCA+CGG | + | chr5.2:16156116-16156135 | MS.gene82457:CDS | 45.0% | |
| GCTTTATATCAGGGCCGTAT+GGG | + | chr5.2:16155928-16155947 | MS.gene82457:intron | 45.0% | |
| TGCTTTATATCAGGGCCGTA+TGG | + | chr5.2:16155927-16155946 | MS.gene82457:intron | 45.0% | |
| ! | TTGGAAAGCATGGCATGTTC+AGG | + | chr5.2:16156159-16156178 | MS.gene82457:CDS | 45.0% |
| !! | GGAATAGGTGGATTGATTGC+TGG | + | chr5.2:16155987-16156006 | MS.gene82457:CDS | 45.0% |
| !! | TTAGCTCATGGATTAGGTGG+TGG | + | chr5.2:16155142-16155161 | MS.gene82457:CDS | 45.0% |
| AGCATGGCATGTTCAGGAAG+TGG | + | chr5.2:16156165-16156184 | MS.gene82457:CDS | 50.0% | |
| ATGGCTACCCTCCACATCAA+GGG | + | chr5.2:16155224-16155243 | MS.gene82457:CDS | 50.0% | |
| ATGGTCACATGCCCCATCAT+GGG | + | chr5.2:16156069-16156088 | MS.gene82457:CDS | 50.0% | |
| CATGAGCATATCCAGCAGGA+GGG | - | chr5.2:16155288-16155307 | None:intergenic | 50.0% | |
| GATAACCCCCTTGATGTGGA+GGG | - | chr5.2:16155234-16155253 | None:intergenic | 50.0% | |
| TATGGTCACATGCCCCATCA+TGG | + | chr5.2:16156068-16156087 | MS.gene82457:CDS | 50.0% | |
| TCCATGTCCATAGTGGCCAT+GGG | - | chr5.2:16156045-16156064 | None:intergenic | 50.0% | |
| !! | CATGGATTAGGTGGTGGTCA+TGG | + | chr5.2:16155148-16155167 | MS.gene82457:CDS | 50.0% |
| AGCAGAAGGACCGGGATATC+CGG | - | chr5.2:16155341-16155360 | None:intergenic | 55.0% | |
| ATGTGGAGGGTAGCCATGTC+CGG | - | chr5.2:16155221-16155240 | None:intergenic | 55.0% | |
| CATAGTGGCCATGGGCAACA+TGG | - | chr5.2:16156037-16156056 | None:intergenic | 55.0% | |
| CATGGCCACTATGGACATGG+AGG | + | chr5.2:16156044-16156063 | MS.gene82457:CDS | 55.0% | |
| CATGGCTACCCTCCACATCA+AGG | + | chr5.2:16155223-16155242 | MS.gene82457:CDS | 55.0% | |
| CATGGTGGTTATCCTCCTGC+TGG | + | chr5.2:16155304-16155323 | MS.gene82457:CDS | 55.0% | |
| CATGTTGCCCATGGCCACTA+TGG | + | chr5.2:16156035-16156054 | MS.gene82457:CDS | 55.0% | |
| CCACCATGAGCATATCCAGC+AGG | - | chr5.2:16155292-16155311 | None:intergenic | 55.0% | |
| CCATGAGCATATCCAGCAGG+AGG | - | chr5.2:16155289-16155308 | None:intergenic | 55.0% | |
| CCTCCTGCTGGATATGCTCA+TGG | + | chr5.2:16155286-16155305 | MS.gene82457:CDS | 55.0% | |
| CCTGCTGGATATGCTCATGG+TGG | + | chr5.2:16155289-16155308 | MS.gene82457:CDS | 55.0% | |
| CTCCATGTCCATAGTGGCCA+TGG | - | chr5.2:16156046-16156065 | None:intergenic | 55.0% | |
| GGAATCATACCTGGGGCATG+TGG | - | chr5.2:16155364-16155383 | None:intergenic | 55.0% | |
| GGAGGATAACCCCCTTGATG+TGG | - | chr5.2:16155238-16155257 | None:intergenic | 55.0% | |
| GGATAACCCCCTTGATGTGG+AGG | - | chr5.2:16155235-16155254 | None:intergenic | 55.0% | |
| GTGGTCATGGTTACCCACCT+GGG | + | chr5.2:16155161-16155180 | MS.gene82457:CDS | 55.0% | |
| TATCCACCTGCCGGATATCC+CGG | + | chr5.2:16155328-16155347 | MS.gene82457:CDS | 55.0% | |
| TGGCTACCCTCCACATCAAG+GGG | + | chr5.2:16155225-16155244 | MS.gene82457:CDS | 55.0% | |
| TGGTCATGGTTACCCACCTG+GGG | + | chr5.2:16155162-16155181 | MS.gene82457:CDS | 55.0% | |
| CAAGGGGGTTATCCTCCAGC+TGG | + | chr5.2:16155241-16155260 | MS.gene82457:CDS | 60.0% | |
| GCAGGTGGATAACCAGCAGG+AGG | - | chr5.2:16155319-16155338 | None:intergenic | 60.0% | |
| GCATGTGGAGCAGAAGGACC+GGG | - | chr5.2:16155349-16155368 | None:intergenic | 60.0% | |
| GCCCATGGCCACTATGGACA+TGG | + | chr5.2:16156041-16156060 | MS.gene82457:CDS | 60.0% | |
| GCTATGGGGGGTGGAATAGG+TGG | + | chr5.2:16155975-16155994 | MS.gene82457:CDS | 60.0% | |
| GCTGGTGCAGCTGCTGCATA+TGG | + | chr5.2:16156005-16156024 | MS.gene82457:CDS | 60.0% | |
| GGCATGTGGAGCAGAAGGAC+CGG | - | chr5.2:16155350-16155369 | None:intergenic | 60.0% | |
| GGCTACCCTCCACATCAAGG+GGG | + | chr5.2:16155226-16155245 | MS.gene82457:CDS | 60.0% | |
| GGTGCTCACCATGTTGCCCA+TGG | + | chr5.2:16156026-16156045 | MS.gene82457:CDS | 60.0% | |
| GGTGGTCATGGTTACCCACC+TGG | + | chr5.2:16155160-16155179 | MS.gene82457:CDS | 60.0% | |
| TGTGGAGGGTAGCCATGTCC+GGG | - | chr5.2:16155220-16155239 | None:intergenic | 60.0% | |
| ! | CCTGCTGGTTATCCACCTGC+CGG | + | chr5.2:16155319-16155338 | MS.gene82457:CDS | 60.0% |
| ! | GGTGCTATGGGGGGTGGAAT+AGG | + | chr5.2:16155972-16155991 | MS.gene82457:CDS | 60.0% |
| AGGAGGGTAACCGCCAGGAG+GGG | - | chr5.2:16155272-16155291 | None:intergenic | 65.0% | |
| CAGGAGGGTAACCGCCAGGA+GGG | - | chr5.2:16155273-16155292 | None:intergenic | 65.0% | |
| CCAGCTGGTTATCCCCCTCC+TGG | + | chr5.2:16155256-16155275 | MS.gene82457:CDS | 65.0% | |
| CCAGGAGGGGGATAACCAGC+TGG | - | chr5.2:16155259-16155278 | None:intergenic | 65.0% | |
| CCGGCAGGTGGATAACCAGC+AGG | - | chr5.2:16155322-16155341 | None:intergenic | 65.0% | |
| CCTGGGGCATGTGGAGCAGA+AGG | - | chr5.2:16155355-16155374 | None:intergenic | 65.0% | |
| CCTTCTGCTCCACATGCCCC+AGG | + | chr5.2:16155352-16155371 | MS.gene82457:CDS | 65.0% | |
| GAAGGACCGGGATATCCGGC+AGG | - | chr5.2:16155337-16155356 | None:intergenic | 65.0% | |
| GCATACCCACCACCCGGACA+TGG | + | chr5.2:16155205-16155224 | MS.gene82457:CDS | 65.0% | |
| GCTGGTTATCCCCCTCCTGG+CGG | + | chr5.2:16155259-16155278 | MS.gene82457:CDS | 65.0% | |
| GGAGGGGGATAACCAGCTGG+AGG | - | chr5.2:16155256-16155275 | None:intergenic | 65.0% | |
| GGTAGCCATGTCCGGGTGGT+GGG | - | chr5.2:16155213-16155232 | None:intergenic | 65.0% | |
| TCAGGGCCGTATGGGCATGC+CGG | + | chr5.2:16155936-16155955 | MS.gene82457:intron | 65.0% | |
| !! | GGTATGCCCCTGGTGGTGGT+GGG | - | chr5.2:16155192-16155211 | None:intergenic | 65.0% |
| ACCCCCCATAGCACCGTGCC+CGG | - | chr5.2:16155967-16155986 | None:intergenic | 70.0% | |
| CAGGGCCGTATGGGCATGCC+GGG | + | chr5.2:16155937-16155956 | MS.gene82457:intron | 70.0% | |
| CCAGCAGGAGGGTAACCGCC+AGG | - | chr5.2:16155277-16155296 | None:intergenic | 70.0% | |
| CCTGGCGGTTACCCTCCTGC+TGG | + | chr5.2:16155274-16155293 | MS.gene82457:CDS | 70.0% | |
| GCAGGAGGGTAACCGCCAGG+AGG | - | chr5.2:16155274-16155293 | None:intergenic | 70.0% | |
| GCGTGCCCGGCATGCCCATA+CGG | - | chr5.2:16155945-16155964 | None:intergenic | 70.0% | |
| GGACCGGGATATCCGGCAGG+TGG | - | chr5.2:16155334-16155353 | None:intergenic | 70.0% | |
| GGAGGGTAACCGCCAGGAGG+GGG | - | chr5.2:16155271-16155290 | None:intergenic | 70.0% | |
| GGAGGGTAGCCATGTCCGGG+TGG | - | chr5.2:16155217-16155236 | None:intergenic | 70.0% | |
| GGCCTACCCACCACCACCAG+GGG | + | chr5.2:16155183-16155202 | MS.gene82457:CDS | 70.0% | |
| GGGCCTACCCACCACCACCA+GGG | + | chr5.2:16155182-16155201 | MS.gene82457:CDS | 70.0% | |
| GGGTAGCCATGTCCGGGTGG+TGG | - | chr5.2:16155214-16155233 | None:intergenic | 70.0% | |
| GGTGGGTATGCCCCTGGTGG+TGG | - | chr5.2:16155196-16155215 | None:intergenic | 70.0% | |
| TATGGGCATGCCGGGCACGC+CGG | + | chr5.2:16155945-16155964 | MS.gene82457:CDS | 70.0% | |
| ! | CCAGGGGCATACCCACCACC+CGG | + | chr5.2:16155199-16155218 | MS.gene82457:CDS | 70.0% |
| !! | ACGCCGGGCACGGTGCTATG+GGG | + | chr5.2:16155961-16155980 | MS.gene82457:CDS | 70.0% |
| !! | CACGCCGGGCACGGTGCTAT+GGG | + | chr5.2:16155960-16155979 | MS.gene82457:CDS | 70.0% |
| !! | GGGTATGCCCCTGGTGGTGG+TGG | - | chr5.2:16155193-16155212 | None:intergenic | 70.0% |
| !! | GGTGGTGGGTATGCCCCTGG+TGG | - | chr5.2:16155199-16155218 | None:intergenic | 70.0% |
| !! | GTGGTGGGTAGGCCCCAGGT+GGG | - | chr5.2:16155177-16155196 | None:intergenic | 70.0% |
| !! | TGCCCCTGGTGGTGGTGGGT+AGG | - | chr5.2:16155188-16155207 | None:intergenic | 70.0% |
| ATGGGCATGCCGGGCACGCC+GGG | + | chr5.2:16155946-16155965 | MS.gene82457:CDS | 75.0% | |
| GGGGCCTACCCACCACCACC+AGG | + | chr5.2:16155181-16155200 | MS.gene82457:CDS | 75.0% | |
| ! | GCACGCCGGGCACGGTGCTA+TGG | + | chr5.2:16155959-16155978 | MS.gene82457:CDS | 75.0% |
| !! | CCGGGTGGTGGGTATGCCCC+TGG | - | chr5.2:16155202-16155221 | None:intergenic | 75.0% |
| !! | CGCCGGGCACGGTGCTATGG+GGG | + | chr5.2:16155962-16155981 | MS.gene82457:CDS | 75.0% |
| !! | GCCGGGCACGGTGCTATGGG+GGG | + | chr5.2:16155963-16155982 | MS.gene82457:CDS | 75.0% |
| !! | GGGCACGGTGCTATGGGGGG+TGG | + | chr5.2:16155966-16155985 | MS.gene82457:CDS | 75.0% |
| !! | GGTGGTGGGTAGGCCCCAGG+TGG | - | chr5.2:16155178-16155197 | None:intergenic | 75.0% |
| !! | GGTGGTGGTGGGTAGGCCCC+AGG | - | chr5.2:16155181-16155200 | None:intergenic | 75.0% |
| ! | AGCACCGTGCCCGGCGTGCC+CGG | - | chr5.2:16155958-16155977 | None:intergenic | 80.0% |
| ! | CATGCCGGGCACGCCGGGCA+CGG | + | chr5.2:16155951-16155970 | MS.gene82457:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 16155085 | 16156193 | 16155085 | ID=MS.gene82457 |
| chr5.2 | mRNA | 16155085 | 16156193 | 16155085 | ID=MS.gene82457.t1;Parent=MS.gene82457 |
| chr5.2 | exon | 16155085 | 16155373 | 16155085 | ID=MS.gene82457.t1.exon1;Parent=MS.gene82457.t1 |
| chr5.2 | CDS | 16155085 | 16155373 | 16155085 | ID=cds.MS.gene82457.t1;Parent=MS.gene82457.t1 |
| chr5.2 | exon | 16155940 | 16156193 | 16155940 | ID=MS.gene82457.t1.exon2;Parent=MS.gene82457.t1 |
| chr5.2 | CDS | 16155940 | 16156193 | 16155940 | ID=cds.MS.gene82457.t1;Parent=MS.gene82457.t1 |
| Gene Sequence |
| Protein sequence |
