AlfalfaGEDB | MS.gene82457

M. sativa cultivar XinJiangDaYe / MS.gene82457

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82457.t1	XP_003612488.1	100	32	0	0	1	32	1	32	3.10E-09	72

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82457.t1	G7K414	100.0	32	0	0	1	32	1	32	2.3e-09	72.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene058592	MS.gene82457	0.827881	1.22E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82457.t1	MTR_5g025570	94.475	181	1	3	1	180	1	173	5.19e-98	281

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 97 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTTAAGCATGGAAAGTT+TGG	0.322334	5.2:+16156140	MS.gene82457:CDS
AAGCACGGGAAATTTAAGCA+TGG	0.701501	5.2:+16156131	MS.gene82457:CDS
AAGCATGGGAAGTTCAAGCA+TGG	0.606900	5.2:+16156098	MS.gene82457:CDS
AAGTTCAAGCATGGAAAATT+CGG	0.401961	5.2:+16156107	MS.gene82457:CDS
AATGATGAATCTGCTGACAA+AGG	0.619466	5.2:+16155106	MS.gene82457:CDS
ACGCCGGGCACGGTGCTATG+GGG	0.402909	5.2:+16155961	MS.gene82457:CDS
AGCACCGTGCCCGGCGTGCC+CGG	0.346545	5.2:-16155955	None:intergenic
AGCAGAAGGACCGGGATATC+CGG	0.447082	5.2:-16155338	None:intergenic
AGCATGGCATGTTCAGGAAG+TGG	0.525395	5.2:+16156165	MS.gene82457:CDS
AGGAGGGTAACCGCCAGGAG+GGG	0.545618	5.2:-16155269	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTTCTCTGCTTTATATCA+GGG	+	chr5.2:16155919-16155938	MS.gene82457:intron	30.0%
AAGTTCAAGCATGGAAAATT+CGG	+	chr5.2:16156107-16156126	MS.gene82457:CDS	30.0%
AGGTAATGTATCAGTTGAAT+AGG	-	chr5.2:16155846-16155865	None:intergenic	30.0%
AATGATGAATCTGCTGACAA+AGG	+	chr5.2:16155106-16155125	MS.gene82457:CDS	35.0%
ATCATGGGAAATTCAAGCAT+GGG	+	chr5.2:16156084-16156103	MS.gene82457:CDS	35.0%
ATGCTTGAATTTCCCATGAT+GGG	-	chr5.2:16156084-16156103	None:intergenic	35.0%
CAACTTCTCTGCTTTATATC+AGG	+	chr5.2:16155918-16155937	MS.gene82457:intron	35.0%
CTGATATAAAGCAGAGAAGT+TGG	-	chr5.2:16155920-16155939	None:intergenic	35.0%
GCTCAAGTTAGTTGAGTTAT+TGG	+	chr5.2:16155505-16155524	MS.gene82457:intron	35.0%
AAGCACGGGAAATTTAAGCA+TGG	+	chr5.2:16156131-16156150	MS.gene82457:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	16155085	16156193	16155085	ID=MS.gene82457
chr5.2	mRNA	16155085	16156193	16155085	ID=MS.gene82457.t1;Parent=MS.gene82457
chr5.2	exon	16155085	16155373	16155085	ID=MS.gene82457.t1.exon1;Parent=MS.gene82457.t1
chr5.2	CDS	16155085	16155373	16155085	ID=cds.MS.gene82457.t1;Parent=MS.gene82457.t1
chr5.2	exon	16155940	16156193	16155940	ID=MS.gene82457.t1.exon2;Parent=MS.gene82457.t1
chr5.2	CDS	16155940	16156193	16155940	ID=cds.MS.gene82457.t1;Parent=MS.gene82457.t1

Gene Sequence

>MS.gene82457

ATGGGAGGTGGAAAAGACAACAATGATGAATCTGCTGACAAAGGAGTTTTCTCACATTTAGCTCATGGATTAGGTGGTGGTCATGGTTACCCACCTGGGGCCTACCCACCACCACCAGGGGCATACCCACCACCCGGACATGGCTACCCTCCACATCAAGGGGGTTATCCTCCAGCTGGTTATCCCCCTCCTGGCGGTTACCCTCCTGCTGGATATGCTCATGGTGGTTATCCTCCTGCTGGTTATCCACCTGCCGGATATCCCGGTCCTTCTGCTCCACATGCCCCAGGTATGATTCCCTTCATTCTTAATTTTTAATATTATAGCTCTTTAATTAATTGATTATTATAATGAATTGATATATATCTCTTTGTTATTATTGTTATGAAAATTTTGATGCTACTTTAGGCTTTTGAGTTGGCTCAAGTTAGTTGAGTTATTGGTGTCTTTAAAACTAATATGTATTCTCTCCGATCACATTTATAATCAAAATATTGTTTTTTTTAGATTCATTGAATAATTGATGTATCTAACTATAACCATGCGTTTGAAATTTTCTTATACTATATTAATTTTGTGAACGCATTCAGAATCTAGACTTTTTTTTTTTTTTTTTGACTATTGTAACTGTTAGTTTGATTTGTGAGTGTATCATCATGTTTTTTGTCCTCAGTAACATTCTCAAAACTAACTTTTCATTTGTACTTTGATTGTTGTCTACTATATTTGAAACTTGTTATTTTTGTAGTTTATTTAAACCTATTCAACTGATACATTACCTGTTTGAAAGTTTTTCTTCTTTTTTGTCTAACTAAAGTGATATGCCACTAAACCAACTTCTCTGCTTTATATCAGGGCCGTATGGGCATGCCGGGCACGCCGGGCACGGTGCTATGGGGGGTGGAATAGGTGGATTGATTGCTGGTGCAGCTGCTGCATATGGTGCTCACCATGTTGCCCATGGCCACTATGGACATGGAGGATATGGTCACATGCCCCATCATGGGAAATTCAAGCATGGGAAGTTCAAGCATGGAAAATTCGGCAAGCACGGGAAATTTAAGCATGGAAAGTTTGGAAAGCATGGCATGTTCAGGAAGTGGAAGTGA

Protein sequence

>MS.gene82457.t1

MGGGKDNNDESADKGVFSHLAHGLGGGHGYPPGAYPPPPGAYPPPGHGYPPHQGGYPPAGYPPPGGYPPAGYAHGGYPPAGYPPAGYPGPSAPHAPGPYGHAGHAGHGAMGGGIGGLIAGAAAAYGAHHVAHGHYGHGGYGHMPHHGKFKHGKFKHGKFGKHGKFKHGKFGKHGMFRKWK