AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene82590

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene82590.t1 MTR_4g045707 83.120 391 43 3 1 371 1 388 0.0 632
MS.gene82590.t1 MTR_3g101010 68.475 387 101 2 5 371 4 389 1.26e-172 486
MS.gene82590.t1 MTR_3g048000 62.663 383 103 3 7 369 28 390 3.19e-164 465
MS.gene82590.t1 MTR_3g018740 63.990 386 115 4 5 369 4 386 3.38e-164 465
MS.gene82590.t1 MTR_8g027395 62.694 386 119 3 6 371 17 397 9.54e-160 454
MS.gene82590.t1 MTR_3g101030 61.707 410 111 9 4 371 24 429 8.23e-158 450
MS.gene82590.t1 MTR_2g046030 60.881 386 127 5 5 369 4 386 2.52e-152 434
MS.gene82590.t1 MTR_8g461160 59.799 398 125 6 1 369 1 392 4.74e-152 434
MS.gene82590.t1 MTR_4g088525 62.842 366 111 4 25 370 8 368 3.48e-151 431
MS.gene82590.t1 MTR_2g045980 61.399 386 125 5 5 369 4 386 3.82e-151 432
MS.gene82590.t1 MTR_7g050750 59.542 393 130 5 5 371 7 396 8.89e-150 428
MS.gene82590.t1 MTR_3g101050 64.000 375 125 8 4 370 25 397 5.46e-149 426
MS.gene82590.t1 MTR_3g101180 58.647 399 134 6 1 369 1 398 9.15e-149 426
MS.gene82590.t1 MTR_8g027420 59.845 386 119 5 6 371 6 375 4.14e-148 423
MS.gene82590.t1 MTR_7g451890 58.718 390 136 4 6 371 14 402 6.69e-148 424
MS.gene82590.t1 MTR_7g047780 58.974 390 135 4 6 371 14 402 3.12e-146 420
MS.gene82590.t1 MTR_3g101130 57.179 397 136 6 1 371 1 389 3.43e-145 417
MS.gene82590.t1 MTR_7g050810 57.398 392 138 5 6 371 16 404 6.28e-142 409
MS.gene82590.t1 MTR_4g088535 57.441 383 122 5 4 366 5 366 1.61e-139 402
MS.gene82590.t1 MTR_3g015620 56.186 388 121 6 6 369 16 378 1.35e-127 372
MS.gene82590.t1 MTR_3g102920 54.615 390 116 7 4 369 56 408 1.08e-122 360
MS.gene82590.t1 MTR_3g100995 67.442 258 80 3 114 371 11 264 3.34e-117 341
MS.gene82590.t1 MTR_3g101200 56.268 343 140 6 30 369 55 390 1.30e-114 339
MS.gene82590.t1 MTR_3g018747 65.134 261 74 4 110 369 9 253 1.20e-107 316
MS.gene82590.t1 MTR_3g101190 48.343 362 103 5 30 371 15 312 4.41e-101 301
MS.gene82590.t1 MTR_3g015760 60.223 269 102 3 102 369 15 279 1.08e-97 292
MS.gene82590.t1 MTR_3g100010 51.438 313 83 4 31 290 42 338 1.29e-92 281
MS.gene82590.t1 MTR_2g046410 67.633 207 60 3 167 369 144 347 5.75e-89 272
MS.gene82590.t1 MTR_3g111160 67.265 223 68 5 151 371 1 220 2.93e-88 265
MS.gene82590.t1 MTR_7g050830 49.524 315 105 5 6 278 16 318 7.78e-88 268
MS.gene82590.t1 MTR_3g100520 60.811 222 73 2 151 371 1 209 9.80e-88 264
MS.gene82590.t1 MTR_3g099970 65.990 197 49 3 110 306 20 198 7.30e-83 251
MS.gene82590.t1 MTR_3g101110 52.917 240 82 4 110 345 68 280 4.54e-72 226
MS.gene82590.t1 MTR_3g114310 38.579 394 200 10 12 371 25 410 2.77e-71 229
MS.gene82590.t1 MTR_3g101150 63.924 158 52 3 216 369 1 157 1.51e-59 190
MS.gene82590.t1 MTR_3g102870 64.430 149 52 1 175 323 3 150 7.14e-58 186
MS.gene82590.t1 MTR_3g101020 56.383 188 54 3 184 371 1 160 8.43e-58 185
MS.gene82590.t1 MTR_3g111150 49.153 177 46 2 8 164 1 153 1.54e-45 154
MS.gene82590.t1 MTR_3g100990 54.962 131 39 1 4 114 3 133 2.90e-34 132
MS.gene82590.t1 MTR_4g093550 64.286 84 30 0 6 89 6 89 1.24e-28 107
MS.gene82590.t1 MTR_6g046890 63.014 73 27 0 14 86 7 79 3.58e-19 83.2
MS.gene82590.t1 MTR_3g101140 62.857 70 23 2 304 371 48 116 4.69e-19 82.4
MS.gene82590.t1 MTR_3g101080 89.286 28 3 0 334 361 12 39 4.93e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene82590.t1 AT1G47710 51.289 388 165 5 5 369 4 390 2.65e-130 379
MS.gene82590.t1 AT1G47710 51.289 388 165 5 5 369 31 417 1.16e-129 378
MS.gene82590.t1 AT3G45220 43.577 397 179 8 6 368 5 390 5.56e-104 312
MS.gene82590.t1 AT2G25240 45.385 390 174 10 6 368 5 382 1.20e-102 308
MS.gene82590.t1 AT2G26390 43.367 392 183 11 6 368 5 386 7.03e-96 291
MS.gene82590.t1 AT1G62170 41.071 392 180 7 6 370 66 433 2.41e-89 276
MS.gene82590.t1 AT1G64030 42.199 391 176 9 5 368 4 371 1.57e-86 267
MS.gene82590.t1 AT2G14540 42.674 389 175 8 5 368 32 397 5.58e-86 266
MS.gene82590.t1 AT1G62170 37.882 425 180 8 6 370 66 466 3.58e-82 258
MS.gene82590.t1 AT2G35580 41.622 370 163 11 29 368 25 371 1.98e-76 241
MS.gene82590.t1 AT1G64010 48.402 219 88 6 151 368 1 195 2.39e-60 193
MS.gene82590.t1 AT1G64010 48.039 204 81 6 166 368 2 181 3.29e-53 174
MS.gene82590.t1 AT1G63280 53.043 115 50 2 110 222 8 120 5.78e-32 117
MS.gene82590.t1 AT1G62160 38.916 203 95 5 173 370 42 220 1.66e-31 119
MS.gene82590.t1 AT1G51330 49.550 111 53 2 109 216 30 140 4.04e-26 103

Find 100 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAGGTTCAATATCTCATT+TGG 0.243686 3.1:-35957252 MS.gene82590:CDS
GTTGAATAACTCCTTTAATA+AGG 0.260616 3.1:+35957643 None:intergenic
CAGTGCCTTCTTCGTTTACT+TGG 0.271310 3.1:+35957097 None:intergenic
GAGACAAATGGCCTTATTAA+AGG 0.273581 3.1:-35957654 MS.gene82590:CDS
TTACTTGGATAAAAGACTTT+TGG 0.279450 3.1:+35957112 None:intergenic
GGCAAGGGAGTCCACCATTT+TGG 0.302321 3.1:+35957164 None:intergenic
CAGGTGCTCAATCCTCTTGC+TGG 0.322054 3.1:-35956937 MS.gene82590:CDS
ACACATTACATACCTTGTTC+TGG 0.335608 3.1:+35958060 None:intergenic
CCTCACCTCTCTGTCGCTAA+TGG 0.345301 3.1:-35958174 MS.gene82590:intron
TCATAATGGCCTAGTTTATA+AGG 0.356902 3.1:+35957417 None:intergenic
TCCTGGAGGTTTGACCAAAA+TGG 0.369609 3.1:-35957178 MS.gene82590:CDS
ACCGGCACAATCCTCTTTGT+TGG 0.389726 3.1:-35956961 MS.gene82590:CDS
AACCCATGAATTGACTTCAT+TGG 0.393781 3.1:+35957683 None:intergenic
CACAATCCTCTTTGTTGGAC+AGG 0.397313 3.1:-35956956 MS.gene82590:CDS
CAAGGTTCAATATCTCATTT+GGG 0.405007 3.1:-35957251 MS.gene82590:CDS
TTTGAGTGAAACGTTGGTTC+GGG 0.409970 3.1:+35958413 None:intergenic
AAAATGGTGGACTCCCTTGC+CGG 0.410137 3.1:-35957162 MS.gene82590:CDS
GAGAGTCCATCTTTCGCATC+TGG 0.410672 3.1:+35957366 None:intergenic
CTTCAACTTCCTTATAAACT+AGG 0.412556 3.1:-35957426 MS.gene82590:CDS
CCCTCTACTTCAAAGGAGTA+TGG 0.413172 3.1:-35957578 MS.gene82590:CDS
GAAAGATGGACTCTCAGATT+TGG 0.427558 3.1:-35957358 MS.gene82590:CDS
TAGAGAATTGACGGTCATAA+TGG 0.428543 3.1:+35957403 None:intergenic
GACAGAGAGGTGAGGCCCGC+CGG 0.431068 3.1:+35958182 None:intergenic
ATTGTTTAGAAAAGAGATGT+TGG 0.437972 3.1:+35958385 None:intergenic
GAAATCAACGGAAGCCAACT+TGG 0.444733 3.1:+35958082 None:intergenic
GATCGATTGATTTGAAACTA+AGG 0.453659 3.1:+35958262 None:intergenic
TGACCAATGAAGTCAATTCA+TGG 0.453988 3.1:-35957686 MS.gene82590:CDS
ATTCTTCCAGATGCGAAAGA+TGG 0.456862 3.1:-35957372 MS.gene82590:CDS
CGGAGGGAGCAGCGTCTTTG+AGG 0.458037 3.1:+35958202 None:intergenic
TCTATTTCACAAGTTAAAGT+AGG 0.458733 3.1:-35957288 MS.gene82590:CDS
TGAAAACACAATGTTGTTGT+AGG 0.459322 3.1:+35958362 None:intergenic
CAACGGAAGCCAACTTGGCT+TGG 0.461840 3.1:+35958087 None:intergenic
CATCATCGCTGCCGGCTCTG+AGG 0.467291 3.1:-35958313 MS.gene82590:CDS
CAACGTATTCGTGCTTCTGA+TGG 0.470734 3.1:-35957459 MS.gene82590:CDS
TTGTTTAGAAAAGAGATGTT+GGG 0.476151 3.1:+35958386 None:intergenic
AGAAACAAACAGGTCTTGAC+CGG 0.477188 3.1:+35957143 None:intergenic
TTTATCCAAGTAAACGAAGA+AGG 0.480744 3.1:-35957102 MS.gene82590:CDS
TCTCTTATTAGAAATAAGAA+TGG 0.482752 3.1:+35956991 None:intergenic
TAAAGTACATAGAGAATTGA+CGG 0.488589 3.1:+35957394 None:intergenic
ATCATCGCTGCCGGCTCTGA+GGG 0.489637 3.1:-35958312 MS.gene82590:CDS
CTCAAAGACGCTGCTCCCTC+CGG 0.493872 3.1:-35958201 MS.gene82590:CDS
TCTCAATGGCAGCTCAATCA+AGG 0.494273 3.1:-35957508 MS.gene82590:CDS
GTTAAGCTGTTGACCACCCC+TGG 0.494814 3.1:+35957621 None:intergenic
CTCTTATTAGAAATAAGAAT+GGG 0.494945 3.1:+35956992 None:intergenic
GTCAAACCTCCAGGATAGAA+AGG 0.496633 3.1:+35957186 None:intergenic
GGAAACGAGGCGAGAGGTGA+CGG 0.513389 3.1:+35958230 None:intergenic
TCCTTTCATGACCAGCATGA+AGG 0.520615 3.1:-35957484 MS.gene82590:CDS
AAGACGCTGCTCCCTCCGGC+GGG 0.522698 3.1:-35958197 MS.gene82590:CDS
CTAATAAGAGAAGATTTGAC+CGG 0.523302 3.1:-35956979 MS.gene82590:CDS
AAAGACGCTGCTCCCTCCGG+CGG 0.530193 3.1:-35958198 MS.gene82590:CDS
ATTCTCAGCATCATCGCTGC+CGG 0.533521 3.1:-35958321 MS.gene82590:CDS
ACCATACTCCTTTGAAGTAG+AGG 0.534276 3.1:+35957577 None:intergenic
GAAGCTGCTGCTGCAACCTA+TGG 0.534815 3.1:-35957075 MS.gene82590:CDS
GAGAGGTGAGGCCCGCCGGA+GGG 0.541500 3.1:+35958186 None:intergenic
AGAAAGGTAAAACCACTCCT+AGG 0.543661 3.1:+35957202 None:intergenic
AAACAGGTCTTGACCGGCAA+GGG 0.545572 3.1:+35957149 None:intergenic
CCATACTCCTTTGAAGTAGA+GGG 0.548242 3.1:+35957578 None:intergenic
CTATGGTACTTTGAGAGCCA+TGG 0.549247 3.1:-35957058 MS.gene82590:CDS
GCTAATGCCCTCTACTTCAA+AGG 0.549267 3.1:-35957585 MS.gene82590:CDS
TTCCGTTGATTTCCAGAACA+AGG 0.549589 3.1:-35958072 MS.gene82590:intron
TTGTGTGGTACCCTCAGAGC+CGG 0.552567 3.1:+35958302 None:intergenic
CATGGCTCTCAAAGTACCAT+AGG 0.558071 3.1:+35957059 None:intergenic
TTCAGATTTCCAAGCCAAGT+TGG 0.558258 3.1:-35958096 MS.gene82590:intron
AGAGAGGTGAGGCCCGCCGG+AGG 0.560706 3.1:+35958185 None:intergenic
AGGTGCTCAATCCTCTTGCT+GGG 0.561778 3.1:-35956936 MS.gene82590:CDS
GACCAATGAAGTCAATTCAT+GGG 0.562924 3.1:-35957685 MS.gene82590:CDS
CCAAATGAGATATTGAACCT+TGG 0.563895 3.1:+35957252 None:intergenic
ATTAAAGGAGTTATTCAACC+AGG 0.564407 3.1:-35957639 MS.gene82590:CDS
TCCTTCATGCTGGTCATGAA+AGG 0.565992 3.1:+35957483 None:intergenic
TGAAACTTCTGATATGCTGA+AGG 0.568879 3.1:-35957226 MS.gene82590:CDS
TATGGTACTTTGAGAGCCAT+GGG 0.583166 3.1:-35957057 MS.gene82590:CDS
TCTGATATGCTGAAGGACCT+AGG 0.594866 3.1:-35957219 MS.gene82590:CDS
TTAAAGGAGTTATTCAACCA+GGG 0.595669 3.1:-35957638 MS.gene82590:CDS
TAGTATGATTACCCAGCAAG+AGG 0.598459 3.1:+35956925 None:intergenic
ACAAAGTCTAGTCGAGGACG+AGG 0.603976 3.1:+35957024 None:intergenic
TCCAACAAAGAGGATTGTGC+CGG 0.604900 3.1:+35956960 None:intergenic
ACGAGGAGGGCTTATACCCA+TGG 0.610987 3.1:+35957041 None:intergenic
AGGAGTTATTCAACCAGGGG+TGG 0.611289 3.1:-35957634 MS.gene82590:CDS
AATACGTTGATCCTTCATGC+TGG 0.616985 3.1:+35957473 None:intergenic
TAAAGGAGTTATTCAACCAG+GGG 0.617142 3.1:-35957637 MS.gene82590:CDS
TACCTTGTTCTGGAAATCAA+CGG 0.624465 3.1:+35958070 None:intergenic
TGGAGGTTTGACCAAAATGG+TGG 0.624890 3.1:-35957175 MS.gene82590:CDS
AGTCTAGTCGAGGACGAGGA+GGG 0.627803 3.1:+35957028 None:intergenic
TGATTGAGCTGCCATTGAGA+AGG 0.630337 3.1:+35957511 None:intergenic
AAGTCTAGTCGAGGACGAGG+AGG 0.638727 3.1:+35957027 None:intergenic
AGCAGCGTCTTTGAGGATGA+CGG 0.640464 3.1:+35958209 None:intergenic
TGAGCACCTGTCCAACAAAG+AGG 0.641694 3.1:+35956950 None:intergenic
ATCGAGAAGTTGTTGTTGTG+TGG 0.642811 3.1:+35958287 None:intergenic
CTTTGAGGATGACGGAAACG+AGG 0.645095 3.1:+35958217 None:intergenic
CAAACAGGTCTTGACCGGCA+AGG 0.648858 3.1:+35957148 None:intergenic
AGAATAACTTGAATCGAGAG+TGG 0.653506 3.1:+35958339 None:intergenic
TAGGTGACTTCAGAATTCCA+AGG 0.662092 3.1:-35957269 MS.gene82590:CDS
TTATTAGAAATAAGAATGGG+TGG 0.662615 3.1:+35956995 None:intergenic
GATGACGGAAACGAGGCGAG+AGG 0.671538 3.1:+35958224 None:intergenic
TCATCTACAAAGTCTAGTCG+AGG 0.680576 3.1:+35957018 None:intergenic
GTGAAATAGAATGAAGCTTG+TGG 0.680859 3.1:+35957301 None:intergenic
TATGCTGAAGGACCTAGGAG+TGG 0.695951 3.1:-35957214 MS.gene82590:CDS
GGGTGATCATTGATTCACGA+CGG 0.714537 3.1:+35958433 None:intergenic
ACACACCATTAGCGACAGAG+AGG 0.716286 3.1:+35958169 None:intergenic
CCATTAGCGACAGAGAGGTG+AGG 0.728609 3.1:+35958174 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAAGAAAATAAACAATTA+AGG + chr3.1:35957367-35957386 None:intergenic 15.0%
!! ATACAAGAAAATATAAGATT+CGG + chr3.1:35957483-35957502 None:intergenic 15.0%
!! CTCTTATTAGAAATAAGAAT+GGG + chr3.1:35958385-35958404 None:intergenic 20.0%
!! GAAATTTGATATGAATTGTT+AGG - chr3.1:35957656-35957675 MS.gene82590:CDS 20.0%
!! TACAAGAAAATATAAGATTC+GGG + chr3.1:35957482-35957501 None:intergenic 20.0%
!! TCTCTTATTAGAAATAAGAA+TGG + chr3.1:35958386-35958405 None:intergenic 20.0%
!!! CATATGTATAAGTTTAGTTT+AGG - chr3.1:35957417-35957436 MS.gene82590:CDS 20.0%
! ATTGTTTAGAAAAGAGATGT+TGG + chr3.1:35956992-35957011 None:intergenic 25.0%
! GTTGAATAACTCCTTTAATA+AGG + chr3.1:35957734-35957753 None:intergenic 25.0%
! TAAAGTACATAGAGAATTGA+CGG + chr3.1:35957983-35958002 None:intergenic 25.0%
! TAGAAAACAGTAAACTAACA+TGG + chr3.1:35957446-35957465 None:intergenic 25.0%
! TCTATTTCACAAGTTAAAGT+AGG - chr3.1:35958086-35958105 MS.gene82590:CDS 25.0%
! TTATTAGAAATAAGAATGGG+TGG + chr3.1:35958382-35958401 None:intergenic 25.0%
! TTGTTTAGAAAAGAGATGTT+GGG + chr3.1:35956991-35957010 None:intergenic 25.0%
!! AAGGTATGTAATGTGTTTTA+GGG - chr3.1:35957321-35957340 MS.gene82590:CDS 25.0%
!! TTACTTGGATAAAAGACTTT+TGG + chr3.1:35958265-35958284 None:intergenic 25.0%
!!! GGAATATTTTAGAAACAAAC+AGG + chr3.1:35958244-35958263 None:intergenic 25.0%
ATTAAAGGAGTTATTCAACC+AGG - chr3.1:35957735-35957754 MS.gene82590:intron 30.0%
CAAGGTTCAATATCTCATTT+GGG - chr3.1:35958123-35958142 MS.gene82590:intron 30.0%
CTAATAAGAGAAGATTTGAC+CGG - chr3.1:35958395-35958414 MS.gene82590:CDS 30.0%
CTTCAACTTCCTTATAAACT+AGG - chr3.1:35957948-35957967 MS.gene82590:intron 30.0%
GAAAGAAGTTTGAAGAGAAA+GGG + chr3.1:35957244-35957263 None:intergenic 30.0%
TCATAATGGCCTAGTTTATA+AGG + chr3.1:35957960-35957979 None:intergenic 30.0%
TGAAAACACAATGTTGTTGT+AGG + chr3.1:35957015-35957034 None:intergenic 30.0%
TTAAAGGAGTTATTCAACCA+GGG - chr3.1:35957736-35957755 MS.gene82590:intron 30.0%
TTAAGGAAACCCTAAAACTA+AGG + chr3.1:35957350-35957369 None:intergenic 30.0%
TTTATCCAAGTAAACGAAGA+AGG - chr3.1:35958272-35958291 MS.gene82590:CDS 30.0%
! AATCTGAAGAAACGATCTTT+TGG + chr3.1:35957266-35957285 None:intergenic 30.0%
! CAAGGTATGTAATGTGTTTT+AGG - chr3.1:35957320-35957339 MS.gene82590:CDS 30.0%
! TATGATTTTCACCTTCTCAA+TGG - chr3.1:35957852-35957871 MS.gene82590:intron 30.0%
!! GATCGATTGATTTGAAACTA+AGG + chr3.1:35957115-35957134 None:intergenic 30.0%
!! TTTAGGGTTTCCTTAGTTTT+AGG - chr3.1:35957337-35957356 MS.gene82590:CDS 30.0%
!!! TTAGGGTTTCCTTAGTTTTA+GGG - chr3.1:35957338-35957357 MS.gene82590:CDS 30.0%
ACACATTACATACCTTGTTC+TGG + chr3.1:35957317-35957336 None:intergenic 35.0%
AGAATAACTTGAATCGAGAG+TGG + chr3.1:35957038-35957057 None:intergenic 35.0%
CCAAATGAGATATTGAACCT+TGG + chr3.1:35958125-35958144 None:intergenic 35.0%
CCAAGGTTCAATATCTCATT+TGG - chr3.1:35958122-35958141 MS.gene82590:intron 35.0%
GACCAATGAAGTCAATTCAT+GGG - chr3.1:35957689-35957708 MS.gene82590:CDS 35.0%
GGAAAGAAGTTTGAAGAGAA+AGG + chr3.1:35957245-35957264 None:intergenic 35.0%
GTGAAATAGAATGAAGCTTG+TGG + chr3.1:35958076-35958095 None:intergenic 35.0%
TAAAGGAGTTATTCAACCAG+GGG - chr3.1:35957737-35957756 MS.gene82590:intron 35.0%
TAGAGAATTGACGGTCATAA+TGG + chr3.1:35957974-35957993 None:intergenic 35.0%
TGAAACTTCTGATATGCTGA+AGG - chr3.1:35958148-35958167 MS.gene82590:intron 35.0%
TGACCAATGAAGTCAATTCA+TGG - chr3.1:35957688-35957707 MS.gene82590:CDS 35.0%
! AACCCATGAATTGACTTCAT+TGG + chr3.1:35957694-35957713 None:intergenic 35.0%
! TGGGTTGAAAAAGAGACAAA+TGG - chr3.1:35957708-35957727 MS.gene82590:intron 35.0%
!! GAGACAAATGGCCTTATTAA+AGG - chr3.1:35957720-35957739 MS.gene82590:intron 35.0%
!! TACCTTGTTCTGGAAATCAA+CGG + chr3.1:35957307-35957326 None:intergenic 35.0%
!! TTTTGAGTGAAACGTTGGTT+CGG + chr3.1:35956965-35956984 None:intergenic 35.0%
AATACGTTGATCCTTCATGC+TGG + chr3.1:35957904-35957923 None:intergenic 40.0%
AGAAACAAACAGGTCTTGAC+CGG + chr3.1:35958234-35958253 None:intergenic 40.0%
AGAAAGGTAAAACCACTCCT+AGG + chr3.1:35958175-35958194 None:intergenic 40.0%
ATTCTTCCAGATGCGAAAGA+TGG - chr3.1:35958002-35958021 MS.gene82590:intron 40.0%
GTGTGTGAGTTAAGTCAACA+TGG + chr3.1:35957537-35957556 None:intergenic 40.0%
TAGGTGACTTCAGAATTCCA+AGG - chr3.1:35958105-35958124 MS.gene82590:intron 40.0%
TCATCTACAAAGTCTAGTCG+AGG + chr3.1:35958359-35958378 None:intergenic 40.0%
TTCAGATTTCCAAGCCAAGT+TGG - chr3.1:35957278-35957297 MS.gene82590:CDS 40.0%
! ATCGAGAAGTTGTTGTTGTG+TGG + chr3.1:35957090-35957109 None:intergenic 40.0%
! GAAAGATGGACTCTCAGATT+TGG - chr3.1:35958016-35958035 MS.gene82590:intron 40.0%
! GTTTTACCTTTCTATCCTGG+AGG - chr3.1:35958182-35958201 MS.gene82590:CDS 40.0%
! TATGGTACTTTGAGAGCCAT+GGG - chr3.1:35958317-35958336 MS.gene82590:CDS 40.0%
!! ACCATACTCCTTTGAAGTAG+AGG + chr3.1:35957800-35957819 None:intergenic 40.0%
!! CCATACTCCTTTGAAGTAGA+GGG + chr3.1:35957799-35957818 None:intergenic 40.0%
!! GTGGTTTTACCTTTCTATCC+TGG - chr3.1:35958179-35958198 MS.gene82590:CDS 40.0%
!! TTCCGTTGATTTCCAGAACA+AGG - chr3.1:35957302-35957321 MS.gene82590:CDS 40.0%
!! TTTGAGTGAAACGTTGGTTC+GGG + chr3.1:35956964-35956983 None:intergenic 40.0%
CAACGTATTCGTGCTTCTGA+TGG - chr3.1:35957915-35957934 MS.gene82590:intron 45.0%
CACAATCCTCTTTGTTGGAC+AGG - chr3.1:35958418-35958437 MS.gene82590:CDS 45.0%
CAGTGCCTTCTTCGTTTACT+TGG + chr3.1:35958280-35958299 None:intergenic 45.0%
CCCTCTACTTCAAAGGAGTA+TGG - chr3.1:35957796-35957815 MS.gene82590:intron 45.0%
GAAATCAACGGAAGCCAACT+TGG + chr3.1:35957295-35957314 None:intergenic 45.0%
GCTAATGCCCTCTACTTCAA+AGG - chr3.1:35957789-35957808 MS.gene82590:intron 45.0%
GTCAAACCTCCAGGATAGAA+AGG + chr3.1:35958191-35958210 None:intergenic 45.0%
TCCAACAAAGAGGATTGTGC+CGG + chr3.1:35958417-35958436 None:intergenic 45.0%
TCCTGGAGGTTTGACCAAAA+TGG - chr3.1:35958196-35958215 MS.gene82590:CDS 45.0%
TCCTTCATGCTGGTCATGAA+AGG + chr3.1:35957894-35957913 None:intergenic 45.0%
TCCTTTCATGACCAGCATGA+AGG - chr3.1:35957890-35957909 MS.gene82590:intron 45.0%
TCTCAATGGCAGCTCAATCA+AGG - chr3.1:35957866-35957885 MS.gene82590:intron 45.0%
TCTGATATGCTGAAGGACCT+AGG - chr3.1:35958155-35958174 MS.gene82590:intron 45.0%
TGATTGAGCTGCCATTGAGA+AGG + chr3.1:35957866-35957885 None:intergenic 45.0%
TGGAGGTTTGACCAAAATGG+TGG - chr3.1:35958199-35958218 MS.gene82590:CDS 45.0%
! CATGGCTCTCAAAGTACCAT+AGG + chr3.1:35958318-35958337 None:intergenic 45.0%
! CTATGGTACTTTGAGAGCCA+TGG - chr3.1:35958316-35958335 MS.gene82590:CDS 45.0%
!! ACCATTTTGGTCAAACCTCC+AGG + chr3.1:35958200-35958219 None:intergenic 45.0%
!! GGCGATTTTGAGTGAAACGT+TGG + chr3.1:35956970-35956989 None:intergenic 45.0%
!! GGGTGATCATTGATTCACGA+CGG + chr3.1:35956944-35956963 None:intergenic 45.0%
AAACAGGTCTTGACCGGCAA+GGG + chr3.1:35958228-35958247 None:intergenic 50.0%
ACAAAGTCTAGTCGAGGACG+AGG + chr3.1:35958353-35958372 None:intergenic 50.0%
ACACACCATTAGCGACAGAG+AGG + chr3.1:35957208-35957227 None:intergenic 50.0%
ACCGGCACAATCCTCTTTGT+TGG - chr3.1:35958413-35958432 MS.gene82590:CDS 50.0%
AGGAGTTATTCAACCAGGGG+TGG - chr3.1:35957740-35957759 MS.gene82590:intron 50.0%
AGGTGCTCAATCCTCTTGCT+GGG - chr3.1:35958438-35958457 MS.gene82590:CDS 50.0%
ATTCTCAGCATCATCGCTGC+CGG - chr3.1:35957053-35957072 MS.gene82590:CDS 50.0%
CTCTGTCGCTAATGGTGTGT+GGG - chr3.1:35957208-35957227 MS.gene82590:CDS 50.0%
GAGAGTCCATCTTTCGCATC+TGG + chr3.1:35958011-35958030 None:intergenic 50.0%
TATGCTGAAGGACCTAGGAG+TGG - chr3.1:35958160-35958179 MS.gene82590:intron 50.0%
TCTCTGTCGCTAATGGTGTG+TGG - chr3.1:35957207-35957226 MS.gene82590:CDS 50.0%
TGAGCACCTGTCCAACAAAG+AGG + chr3.1:35958427-35958446 None:intergenic 50.0%
! AGCAGCGTCTTTGAGGATGA+CGG + chr3.1:35957168-35957187 None:intergenic 50.0%
!! AAAATGGTGGACTCCCTTGC+CGG - chr3.1:35958212-35958231 MS.gene82590:CDS 50.0%
!! CTTTGAGGATGACGGAAACG+AGG + chr3.1:35957160-35957179 None:intergenic 50.0%
AAGTCTAGTCGAGGACGAGG+AGG + chr3.1:35958350-35958369 None:intergenic 55.0%
ACGAGGAGGGCTTATACCCA+TGG + chr3.1:35958336-35958355 None:intergenic 55.0%
AGTCTAGTCGAGGACGAGGA+GGG + chr3.1:35958349-35958368 None:intergenic 55.0%
CAAACAGGTCTTGACCGGCA+AGG + chr3.1:35958229-35958248 None:intergenic 55.0%
CAACGGAAGCCAACTTGGCT+TGG + chr3.1:35957290-35957309 None:intergenic 55.0%
CAGGTGCTCAATCCTCTTGC+TGG - chr3.1:35958437-35958456 MS.gene82590:CDS 55.0%
CCATTAGCGACAGAGAGGTG+AGG + chr3.1:35957203-35957222 None:intergenic 55.0%
CCTCACCTCTCTGTCGCTAA+TGG - chr3.1:35957200-35957219 MS.gene82590:CDS 55.0%
GAAGCTGCTGCTGCAACCTA+TGG - chr3.1:35958299-35958318 MS.gene82590:CDS 55.0%
GTTAAGCTGTTGACCACCCC+TGG + chr3.1:35957756-35957775 None:intergenic 55.0%
TTGTGTGGTACCCTCAGAGC+CGG + chr3.1:35957075-35957094 None:intergenic 55.0%
! GGCAAGGGAGTCCACCATTT+TGG + chr3.1:35958213-35958232 None:intergenic 55.0%
CTCAAAGACGCTGCTCCCTC+CGG - chr3.1:35957173-35957192 MS.gene82590:CDS 60.0%
GGAAACGAGGCGAGAGGTGA+CGG + chr3.1:35957147-35957166 None:intergenic 60.0%
!! ATCATCGCTGCCGGCTCTGA+GGG - chr3.1:35957062-35957081 MS.gene82590:CDS 60.0%
!! GATGACGGAAACGAGGCGAG+AGG + chr3.1:35957153-35957172 None:intergenic 60.0%
AAAGACGCTGCTCCCTCCGG+CGG - chr3.1:35957176-35957195 MS.gene82590:CDS 65.0%
CGGAGGGAGCAGCGTCTTTG+AGG + chr3.1:35957175-35957194 None:intergenic 65.0%
!! CATCATCGCTGCCGGCTCTG+AGG - chr3.1:35957061-35957080 MS.gene82590:CDS 65.0%
AAGACGCTGCTCCCTCCGGC+GGG - chr3.1:35957177-35957196 MS.gene82590:CDS 70.0%
GACAGAGAGGTGAGGCCCGC+CGG + chr3.1:35957195-35957214 None:intergenic 70.0%
AGAGAGGTGAGGCCCGCCGG+AGG + chr3.1:35957192-35957211 None:intergenic 75.0%
GAGAGGTGAGGCCCGCCGGA+GGG + chr3.1:35957191-35957210 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 35956933 35958463 35956933 ID=MS.gene82590
chr3.1 mRNA 35956933 35958463 35956933 ID=MS.gene82590.t1;Parent=MS.gene82590
chr3.1 exon 35958175 35958463 35958175 ID=MS.gene82590.t1.exon1;Parent=MS.gene82590.t1
chr3.1 CDS 35958175 35958463 35958175 ID=cds.MS.gene82590.t1;Parent=MS.gene82590.t1
chr3.1 exon 35958073 35958113 35958073 ID=MS.gene82590.t1.exon2;Parent=MS.gene82590.t1
chr3.1 CDS 35958073 35958113 35958073 ID=cds.MS.gene82590.t1;Parent=MS.gene82590.t1
chr3.1 exon 35956933 35957718 35956933 ID=MS.gene82590.t1.exon3;Parent=MS.gene82590.t1
chr3.1 CDS 35956933 35957718 35956933 ID=cds.MS.gene82590.t1;Parent=MS.gene82590.t1
Gene Sequence

>MS.gene82590

ATGGAGTTCCGTCGTGAATCAATGATCACCCGAACCAACGTTTCACTCAAAATCGCCCAACATCTCTTTTCTAAACAATCCTACAACAACATTGTGTTTTCACCACTCTCGATTCAAGTTATTCTCAGCATCATCGCTGCCGGCTCTGAGGGTACCACACAACAACAACTTCTCGATTTCCTTAGTTTCAAATCAATCGATCAACTCAACTCCGTCACCTCTCGCCTCGTTTCCGTCATCCTCAAAGACGCTGCTCCCTCCGGCGGGCCTCACCTCTCTGTCGCTAATGGTGTGTGGGTTGAAAAAAACCCTTTCTCTTCAAACTTCTTTCCAAAAGATCGTTTCTTCAGATTTCCAAGCCAAGTTGGCTTCCGTTGATTTCCAGAACAAGGTATGTAATGTGTTTTAGGGTTTCCTTAGTTTTAGGGTTTCCTTAATTGTTTATTTTCTTGTTGTTCTATTTTTGATTTTATTGTTCTATTTTCATATGTATAAGTTTAGTTTAGGAATCCATGTTAGTTTACTGTTTTCTATCAAATTAGAGTTCCCGAATCTTATATTTTCTTGTATTTATCGATTCAATTCAAATTGACTGAAACTACCATGTTGACTTAACTCACACACACACACACACACACACACACAACTAATTTAGCAACATAAAGTTAAATACTTCAATACTTGTGAAAAGTGCTCAACTTATCTATTTGCATAATTTATTTTGAAATTTGATATGAATTGTTAGGCTGTTGAAGTGACCAATGAAGTCAATTCATGGGTTGAAAAAGAGACAAATGGCCTTATTAAAGGAGTTATTCAACCAGGGGTGGTCAACAGCTTAACGAGACTCATCTTTGCTAATGCCCTCTACTTCAAAGGAGTATGGTCTAAGAAGTTTGATGCTTCAAAAACGAAAGATTATGATTTTCACCTTCTCAATGGCAGCTCAATCAAGGTTCCTTTCATGACCAGCATGAAGGATCAACGTATTCGTGCTTCTGATGGTTTTAAAGTACTTCAACTTCCTTATAAACTAGGCCATTATGACCGTCAATTCTCTATGTACTTTATTCTTCCAGATGCGAAAGATGGACTCTCAGATTTGGTTGAGAAGATGACTTCTGAATCTGAGTCACTACACCACAAGCTTCATTCTATTTCACAAGTTAAAGTAGGTGACTTCAGAATTCCAAGGTTCAATATCTCATTTGGGTTTGAAACTTCTGATATGCTGAAGGACCTAGGAGTGGTTTTACCTTTCTATCCTGGAGGTTTGACCAAAATGGTGGACTCCCTTGCCGGTCAAGACCTGTTTGTTTCTAAAATATTCCAAAAGTCTTTTATCCAAGTAAACGAAGAAGGCACTGAAGCTGCTGCTGCAACCTATGGTACTTTGAGAGCCATGGGTATAAGCCCTCCTCGTCCTCGACTAGACTTTGTAGATGACCACCCATTCTTATTTCTAATAAGAGAAGATTTGACCGGCACAATCCTCTTTGTTGGACAGGTGCTCAATCCTCTTGCTGGGTAA
Protein sequence

>MS.gene82590.t1

MEFRRESMITRTNVSLKIAQHLFSKQSYNNIVFSPLSIQVILSIIAAGSEGTTQQQLLDFLSFKSIDQLNSVTSRLVSVILKDAAPSGGPHLSVANDFQAKLASVDFQNKAVEVTNEVNSWVEKETNGLIKGVIQPGVVNSLTRLIFANALYFKGVWSKKFDASKTKDYDFHLLNGSSIKVPFMTSMKDQRIRASDGFKVLQLPYKLGHYDRQFSMYFILPDAKDGLSDLVEKMTSESESLHHKLHSISQVKVGDFRIPRFNISFGFETSDMLKDLGVVLPFYPGGLTKMVDSLAGQDLFVSKIFQKSFIQVNEEGTEAAAATYGTLRAMGISPPRPRLDFVDDHPFLFLIREDLTGTILFVGQVLNPLAG