Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82604.t1 | RHN75587.1 | 81.7 | 278 | 15 | 1 | 6 | 247 | 389 | 666 | 2.40E-100 | 375.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82604.t1 | A0A396JKI7 | 81.7 | 278 | 15 | 1 | 6 | 247 | 389 | 666 | 1.7e-100 | 375.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053974 | MS.gene82604 | 0.802668 | 5.03E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82604.t1 | MTR_3g005890 | 91.964 | 112 | 6 | 1 | 136 | 247 | 18 | 126 | 1.08e-61 | 190 |
| MS.gene82604.t1 | MTR_4g029740 | 84.694 | 98 | 15 | 0 | 1 | 98 | 104 | 201 | 3.33e-58 | 186 |
| MS.gene82604.t1 | MTR_2g026970 | 74.561 | 114 | 26 | 1 | 118 | 231 | 3 | 113 | 9.74e-50 | 160 |
| MS.gene82604.t1 | MTR_3g463980 | 86.517 | 89 | 12 | 0 | 124 | 212 | 73 | 161 | 2.17e-43 | 144 |
| MS.gene82604.t1 | MTR_5g062110 | 86.250 | 80 | 8 | 1 | 168 | 247 | 228 | 304 | 8.21e-37 | 132 |
| MS.gene82604.t1 | MTR_1g103480 | 83.117 | 77 | 10 | 1 | 171 | 247 | 11 | 84 | 4.29e-36 | 123 |
| MS.gene82604.t1 | MTR_5g046450 | 88.571 | 70 | 5 | 1 | 178 | 247 | 1 | 67 | 1.10e-34 | 119 |
| MS.gene82604.t1 | MTR_6g040280 | 86.667 | 60 | 8 | 0 | 188 | 247 | 79 | 138 | 9.32e-28 | 103 |
| MS.gene82604.t1 | MTR_1g077860 | 41.989 | 181 | 81 | 5 | 60 | 240 | 3 | 159 | 2.33e-27 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 55 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCAGACAACTTCATCTTCT+TGG | 0.215709 | 3.1:-36078675 | MS.gene82604:CDS |
| GTACCCGATACATTGTATTT+TGG | 0.222822 | 3.1:+36079542 | None:intergenic |
| AATAATGAACTGTCTGTTAC+AGG | 0.245680 | 3.1:-36080239 | None:intergenic |
| AAAATTGGGAAGATAGTAAA+TGG | 0.294207 | 3.1:-36079462 | MS.gene82604:CDS |
| TCTATGTCTTGCTCATGTTC+AGG | 0.345935 | 3.1:+36079598 | None:intergenic |
| AAAGGACGCATATATGGTTT+GGG | 0.363718 | 3.1:-36078629 | MS.gene82604:CDS |
| TCGACCTCATCATTCGAGTT+AGG | 0.369584 | 3.1:-36078321 | None:intergenic |
| GAAAGGACGCATATATGGTT+TGG | 0.386407 | 3.1:-36078630 | MS.gene82604:CDS |
| GACAAGAAAGGACGCATATA+TGG | 0.389651 | 3.1:-36078635 | MS.gene82604:CDS |
| TTCATCTTCTTGGACGTAGT+TGG | 0.429547 | 3.1:-36078665 | MS.gene82604:CDS |
| AGTGCAGTTTCAGAAATTCA+TGG | 0.444334 | 3.1:-36078381 | MS.gene82604:CDS |
| CATCTGAATATGAGCATATG+AGG | 0.460761 | 3.1:-36078550 | MS.gene82604:CDS |
| TATGGTTTGGGGACAGAGGC+AGG | 0.462107 | 3.1:-36078617 | MS.gene82604:CDS |
| CTCGAATGATGAGGTCGATA+AGG | 0.463677 | 3.1:+36078326 | None:intergenic |
| GATGGTCCATTGCACACTTG+TGG | 0.470798 | 3.1:-36079397 | MS.gene82604:CDS |
| ATCTTCTTGGACGTAGTTGG+AGG | 0.475318 | 3.1:-36078662 | MS.gene82604:CDS |
| AGAGAAGACTTATCATCATA+AGG | 0.476174 | 3.1:-36079578 | MS.gene82604:CDS |
| TCTTCATCTAGATCATTTGA+CGG | 0.476700 | 3.1:-36078581 | MS.gene82604:CDS |
| GGTACCAAAATACAATGTAT+CGG | 0.506345 | 3.1:-36079546 | MS.gene82604:CDS |
| ATGGTCCATTGCACACTTGT+GGG | 0.510305 | 3.1:-36079396 | MS.gene82604:CDS |
| TATTGCAGAGGATATATAAG+TGG | 0.513050 | 3.1:-36079624 | MS.gene82604:intron |
| GTTGGAGGAGTCGACAAGAA+AGG | 0.515823 | 3.1:-36078647 | MS.gene82604:CDS |
| GGAATTGATTCGTGCATCAC+AGG | 0.517494 | 3.1:-36078465 | MS.gene82604:CDS |
| GTACCAAAATACAATGTATC+GGG | 0.520464 | 3.1:-36079545 | MS.gene82604:CDS |
| ACAATGTATCGGGTACGAAA+AGG | 0.523365 | 3.1:-36079535 | MS.gene82604:CDS |
| AGCTGAAAACATGGAACTCA+AGG | 0.528038 | 3.1:-36078507 | MS.gene82604:CDS |
| TATCATCATAAGGCATCTGA+TGG | 0.529469 | 3.1:-36079568 | MS.gene82604:CDS |
| AGAGCAGTCACAACAGTCAC+AGG | 0.532811 | 3.1:-36078423 | MS.gene82604:CDS |
| GTGTAGGATGAATATGAAAG+AGG | 0.541573 | 3.1:-36078755 | MS.gene82604:intron |
| TGTAGGATGAATATGAAAGA+GGG | 0.565349 | 3.1:-36078754 | MS.gene82604:intron |
| TAAAATGTCAGCTGAAAACA+TGG | 0.565653 | 3.1:-36078516 | MS.gene82604:CDS |
| ATGAAAGAGGGATCTTTGAA+AGG | 0.571397 | 3.1:-36078742 | MS.gene82604:CDS |
| CTCATATGCTCATATTCAGA+TGG | 0.573783 | 3.1:+36078551 | None:intergenic |
| TTGGGAAGATAGTAAATGGA+AGG | 0.581599 | 3.1:-36079458 | MS.gene82604:CDS |
| AAGGAATAGACAAAGGCGAA+TGG | 0.591694 | 3.1:-36079516 | MS.gene82604:CDS |
| AGTGTGCAATGGACCATCAG+AGG | 0.611168 | 3.1:+36079402 | None:intergenic |
| CAAAATAGAAGATCCTCTGA+TGG | 0.614529 | 3.1:-36079415 | MS.gene82604:CDS |
| AGGAACTCACAACAAACAGA+GGG | 0.614725 | 3.1:-36078722 | MS.gene82604:CDS |
| ATCATCATAAGGCATCTGAT+GGG | 0.619211 | 3.1:-36079567 | MS.gene82604:CDS |
| TGAATTTCTGAAACTGCACT+CGG | 0.627713 | 3.1:+36078384 | None:intergenic |
| GGAGCGGTTGAAGACTAATG+AGG | 0.631387 | 3.1:-36078486 | MS.gene82604:CDS |
| AAGGACGCATATATGGTTTG+GGG | 0.632830 | 3.1:-36078628 | MS.gene82604:CDS |
| CATATATGGTTTGGGGACAG+AGG | 0.639631 | 3.1:-36078621 | MS.gene82604:CDS |
| GAATGATGAGGTCGATAAGG+AGG | 0.641224 | 3.1:+36078329 | None:intergenic |
| AGATGAAGTTGTCTGACTGA+TGG | 0.649405 | 3.1:+36078681 | None:intergenic |
| ATTGATTCGTGCATCACAGG+AGG | 0.652125 | 3.1:-36078462 | MS.gene82604:CDS |
| ATTGACCCACAAGTGTGCAA+TGG | 0.663699 | 3.1:+36079391 | None:intergenic |
| GTACGAAAAGGAATAGACAA+AGG | 0.669707 | 3.1:-36079523 | MS.gene82604:CDS |
| TCCTCCTAACTCGAATGATG+AGG | 0.671006 | 3.1:+36078317 | None:intergenic |
| GCAGTCACAACAGTCACAGG+AGG | 0.677302 | 3.1:-36078420 | MS.gene82604:CDS |
| AAGGAACTCACAACAAACAG+AGG | 0.682264 | 3.1:-36078723 | MS.gene82604:CDS |
| AGATAGTAAATGGAAGGACA+AGG | 0.688548 | 3.1:-36079452 | MS.gene82604:CDS |
| AAAACATGGAACTCAAGGAG+CGG | 0.689936 | 3.1:-36078502 | MS.gene82604:CDS |
| GAACTCACAACAAACAGAGG+GGG | 0.692900 | 3.1:-36078720 | MS.gene82604:CDS |
| GGAACTCACAACAAACAGAG+GGG | 0.755288 | 3.1:-36078721 | MS.gene82604:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAATAGATTAGTATTA+TGG | + | chr3.1:36079268-36079287 | None:intergenic | 10.0% |
| !! | AACAACAAAGAATGATAAAA+AGG | + | chr3.1:36078411-36078430 | None:intergenic | 20.0% |
| !! | ACAACAAAGAATGATAAAAA+GGG | + | chr3.1:36078410-36078429 | None:intergenic | 20.0% |
| !! | ATGCATAACATTAAAAACTA+TGG | + | chr3.1:36079656-36079675 | None:intergenic | 20.0% |
| !! | TGAAAAATTGGAACAAAATT+GGG | - | chr3.1:36079081-36079100 | MS.gene82604:intron | 20.0% |
| !!! | AAGTTTTCTAATGTAGTTAT+TGG | - | chr3.1:36078726-36078745 | MS.gene82604:CDS | 20.0% |
| !!! | AGTTTTCTAATGTAGTTATT+GGG | - | chr3.1:36078727-36078746 | MS.gene82604:CDS | 20.0% |
| !!! | TTACATTATTTTTATTGCAG+AGG | - | chr3.1:36078921-36078940 | MS.gene82604:intron | 20.0% |
| !!! | TTTTATGTTTATTTCACAGA+AGG | + | chr3.1:36079418-36079437 | None:intergenic | 20.0% |
| ! | AAAACAATTATAGCACATGA+TGG | + | chr3.1:36079588-36079607 | None:intergenic | 25.0% |
| ! | AAAATTGGGAAGATAGTAAA+TGG | - | chr3.1:36079095-36079114 | MS.gene82604:intron | 25.0% |
| ! | AAGTCAGTTGAACAATTAAA+AGG | + | chr3.1:36078771-36078790 | None:intergenic | 25.0% |
| ! | AGTCAGTTGAACAATTAAAA+GGG | + | chr3.1:36078770-36078789 | None:intergenic | 25.0% |
| ! | ATAAAGACACACAAAATGAA+AGG | - | chr3.1:36079343-36079362 | MS.gene82604:intron | 25.0% |
| ! | CAACAAAGAATGATAAAAAG+GGG | + | chr3.1:36078409-36078428 | None:intergenic | 25.0% |
| ! | CTAGAATTAGTTATATCCTT+TGG | - | chr3.1:36079456-36079475 | MS.gene82604:CDS | 25.0% |
| ! | GATAATCTTATCGAATTGTA+AGG | + | chr3.1:36079387-36079406 | None:intergenic | 25.0% |
| ! | GTGAAAAATTGGAACAAAAT+TGG | - | chr3.1:36079080-36079099 | MS.gene82604:intron | 25.0% |
| ! | TTTATTCTGTTAAAGTCAGT+TGG | + | chr3.1:36078803-36078822 | None:intergenic | 25.0% |
| !! | TCATGTGCTATAATTGTTTT+TGG | - | chr3.1:36079588-36079607 | MS.gene82604:CDS | 25.0% |
| AGAGAAGACTTATCATCATA+AGG | - | chr3.1:36078979-36078998 | MS.gene82604:intron | 30.0% | |
| GAATTAGTTATATCCTTTGG+TGG | - | chr3.1:36079459-36079478 | MS.gene82604:CDS | 30.0% | |
| GGTACCAAAATACAATGTAT+CGG | - | chr3.1:36079011-36079030 | MS.gene82604:intron | 30.0% | |
| GTACCAAAATACAATGTATC+GGG | - | chr3.1:36079012-36079031 | MS.gene82604:intron | 30.0% | |
| GTCTTATGTAAATGCAAATG+TGG | - | chr3.1:36078499-36078518 | MS.gene82604:CDS | 30.0% | |
| TAAAATGTCAGCTGAAAACA+TGG | - | chr3.1:36080041-36080060 | MS.gene82604:intron | 30.0% | |
| TATTGCAGAGGATATATAAG+TGG | - | chr3.1:36078933-36078952 | MS.gene82604:intron | 30.0% | |
| TCTTCATCTAGATCATTTGA+CGG | - | chr3.1:36079976-36079995 | MS.gene82604:intron | 30.0% | |
| TGATCTTATGTTTCTTCACT+TGG | - | chr3.1:36079715-36079734 | MS.gene82604:intron | 30.0% | |
| TGTAGGATGAATATGAAAGA+GGG | - | chr3.1:36079803-36079822 | MS.gene82604:intron | 30.0% | |
| TGTTCAATTGCGTGAAAAAT+TGG | - | chr3.1:36079069-36079088 | MS.gene82604:intron | 30.0% | |
| ! | AATTTTTCACGCAATTGAAC+AGG | + | chr3.1:36079070-36079089 | None:intergenic | 30.0% |
| ! | ATTTTTCACGCAATTGAACA+GGG | + | chr3.1:36079069-36079088 | None:intergenic | 30.0% |
| ! | TATGCTATGATAATGTTGTC+TGG | - | chr3.1:36078609-36078628 | MS.gene82604:CDS | 30.0% |
| ! | TGATTTATCAGAAGCATGTT+TGG | - | chr3.1:36078541-36078560 | MS.gene82604:CDS | 30.0% |
| AAAAACTATGGCACAAAAGC+AGG | + | chr3.1:36079644-36079663 | None:intergenic | 35.0% | |
| AAAGCTCCTAGTTTGATGTT+CGG | - | chr3.1:36078883-36078902 | MS.gene82604:intron | 35.0% | |
| AAAGGACGCATATATGGTTT+GGG | - | chr3.1:36079928-36079947 | MS.gene82604:intron | 35.0% | |
| AAATGTGGCATCTAATTGTG+TGG | - | chr3.1:36078514-36078533 | MS.gene82604:CDS | 35.0% | |
| AAGACGAACTCTAATTGTGT+AGG | - | chr3.1:36079786-36079805 | MS.gene82604:intron | 35.0% | |
| AATGAAAGGTGATCCATCAA+AGG | - | chr3.1:36079357-36079376 | MS.gene82604:intron | 35.0% | |
| AGATAGTAAATGGAAGGACA+AGG | - | chr3.1:36079105-36079124 | MS.gene82604:intron | 35.0% | |
| AGTGCAGTTTCAGAAATTCA+TGG | - | chr3.1:36080176-36080195 | MS.gene82604:intron | 35.0% | |
| ATGAAAGAGGGATCTTTGAA+AGG | - | chr3.1:36079815-36079834 | MS.gene82604:intron | 35.0% | |
| ATGTTTATTTCACAGAAGGC+TGG | + | chr3.1:36079414-36079433 | None:intergenic | 35.0% | |
| ATTGTAAGGATCACCTTTGA+TGG | + | chr3.1:36079373-36079392 | None:intergenic | 35.0% | |
| CAAAATAGAAGATCCTCTGA+TGG | - | chr3.1:36079142-36079161 | MS.gene82604:intron | 35.0% | |
| CATCTGAATATGAGCATATG+AGG | - | chr3.1:36080007-36080026 | MS.gene82604:intron | 35.0% | |
| CTCATATGCTCATATTCAGA+TGG | + | chr3.1:36080009-36080028 | None:intergenic | 35.0% | |
| GTACGAAAAGGAATAGACAA+AGG | - | chr3.1:36079034-36079053 | MS.gene82604:intron | 35.0% | |
| GTGTAGGATGAATATGAAAG+AGG | - | chr3.1:36079802-36079821 | MS.gene82604:intron | 35.0% | |
| GTTAAACCGAACATCAAACT+AGG | + | chr3.1:36078892-36078911 | None:intergenic | 35.0% | |
| TACAATGATCCTGCAGATTA+AGG | + | chr3.1:36078685-36078704 | None:intergenic | 35.0% | |
| TTGGGAAGATAGTAAATGGA+AGG | - | chr3.1:36079099-36079118 | MS.gene82604:intron | 35.0% | |
| TTTGTTCATCCTTAATCTGC+AGG | - | chr3.1:36078673-36078692 | MS.gene82604:CDS | 35.0% | |
| ! | ATCATCATAAGGCATCTGAT+GGG | - | chr3.1:36078990-36079009 | MS.gene82604:intron | 35.0% |
| ! | GTACCCGATACATTGTATTT+TGG | + | chr3.1:36079018-36079037 | None:intergenic | 35.0% |
| ! | TATCATCATAAGGCATCTGA+TGG | - | chr3.1:36078989-36079008 | MS.gene82604:intron | 35.0% |
| ! | TTCATGGAGTCTTTTACACA+AGG | - | chr3.1:36080192-36080211 | MS.gene82604:intron | 35.0% |
| !! | TGAATTTCTGAAACTGCACT+CGG | + | chr3.1:36080176-36080195 | None:intergenic | 35.0% |
| AAAACATGGAACTCAAGGAG+CGG | - | chr3.1:36080055-36080074 | MS.gene82604:intron | 40.0% | |
| AAGGAACTCACAACAAACAG+AGG | - | chr3.1:36079834-36079853 | MS.gene82604:intron | 40.0% | |
| AAGGAATAGACAAAGGCGAA+TGG | - | chr3.1:36079041-36079060 | MS.gene82604:intron | 40.0% | |
| AAGGACGCATATATGGTTTG+GGG | - | chr3.1:36079929-36079948 | MS.gene82604:intron | 40.0% | |
| ACAATGTATCGGGTACGAAA+AGG | - | chr3.1:36079022-36079041 | MS.gene82604:intron | 40.0% | |
| AGATGAAGTTGTCTGACTGA+TGG | + | chr3.1:36079879-36079898 | None:intergenic | 40.0% | |
| AGCTGAAAACATGGAACTCA+AGG | - | chr3.1:36080050-36080069 | MS.gene82604:intron | 40.0% | |
| AGGAACTCACAACAAACAGA+GGG | - | chr3.1:36079835-36079854 | MS.gene82604:intron | 40.0% | |
| CAAACATGATTCCAAGCTAC+TGG | - | chr3.1:36079312-36079331 | MS.gene82604:intron | 40.0% | |
| CAGCATGCATCAATACACAT+AGG | + | chr3.1:36079549-36079568 | None:intergenic | 40.0% | |
| GAAAGGACGCATATATGGTT+TGG | - | chr3.1:36079927-36079946 | MS.gene82604:intron | 40.0% | |
| GACAAGAAAGGACGCATATA+TGG | - | chr3.1:36079922-36079941 | MS.gene82604:intron | 40.0% | |
| GGTTTACCAGATCTCATATC+AGG | + | chr3.1:36078452-36078471 | None:intergenic | 40.0% | |
| GTCAGACAACTTCATCTTCT+TGG | - | chr3.1:36079882-36079901 | MS.gene82604:intron | 40.0% | |
| TATATACACCTCCAGTAGCT+TGG | + | chr3.1:36079326-36079345 | None:intergenic | 40.0% | |
| TCTATGTCTTGCTCATGTTC+AGG | + | chr3.1:36078962-36078981 | None:intergenic | 40.0% | |
| TCTCTACCTGATATGAGATC+TGG | - | chr3.1:36078443-36078462 | MS.gene82604:CDS | 40.0% | |
| TGGTGGAAAGTCAAGGTAAT+TGG | - | chr3.1:36079493-36079512 | MS.gene82604:CDS | 40.0% | |
| TTCATCTTCTTGGACGTAGT+TGG | - | chr3.1:36079892-36079911 | MS.gene82604:intron | 40.0% | |
| !! | GTTATATCCTTTGGTGGACT+TGG | - | chr3.1:36079465-36079484 | MS.gene82604:CDS | 40.0% |
| !!! | CTTTTAGAATGCTCGATCGT+TGG | + | chr3.1:36079193-36079212 | None:intergenic | 40.0% |
| ACATGATTCCAAGCTACTGG+AGG | - | chr3.1:36079315-36079334 | MS.gene82604:intron | 45.0% | |
| ATCTTCTTGGACGTAGTTGG+AGG | - | chr3.1:36079895-36079914 | MS.gene82604:intron | 45.0% | |
| ATGGTCCATTGCACACTTGT+GGG | - | chr3.1:36079161-36079180 | MS.gene82604:intron | 45.0% | |
| ATTGACCCACAAGTGTGCAA+TGG | + | chr3.1:36079169-36079188 | None:intergenic | 45.0% | |
| CTCGAATGATGAGGTCGATA+AGG | + | chr3.1:36080234-36080253 | None:intergenic | 45.0% | |
| GAACTCACAACAAACAGAGG+GGG | - | chr3.1:36079837-36079856 | MS.gene82604:intron | 45.0% | |
| GAATGATGAGGTCGATAAGG+AGG | + | chr3.1:36080231-36080250 | None:intergenic | 45.0% | |
| GGAACTCACAACAAACAGAG+GGG | - | chr3.1:36079836-36079855 | MS.gene82604:intron | 45.0% | |
| TCAAACTAGGAGCTTTGCTC+TGG | + | chr3.1:36078879-36078898 | None:intergenic | 45.0% | |
| ! | AAAAGGGTACAGACGACAGT+TGG | + | chr3.1:36078754-36078773 | None:intergenic | 45.0% |
| ! | CATATATGGTTTGGGGACAG+AGG | - | chr3.1:36079936-36079955 | MS.gene82604:intron | 45.0% |
| !! | ATTGATTCGTGCATCACAGG+AGG | - | chr3.1:36080095-36080114 | MS.gene82604:intron | 45.0% |
| !! | GGAATTGATTCGTGCATCAC+AGG | - | chr3.1:36080092-36080111 | MS.gene82604:intron | 45.0% |
| !! | AAAAATAATGTAAATAATAT+AGG | + | chr3.1:36078914-36078933 | None:intergenic | 5.0% |
| AGAGCAGTCACAACAGTCAC+AGG | - | chr3.1:36080134-36080153 | MS.gene82604:intron | 50.0% | |
| AGTGTGCAATGGACCATCAG+AGG | + | chr3.1:36079158-36079177 | None:intergenic | 50.0% | |
| CAGCATACCAAGTCCACCAA+AGG | + | chr3.1:36079475-36079494 | None:intergenic | 50.0% | |
| GATGGTCCATTGCACACTTG+TGG | - | chr3.1:36079160-36079179 | MS.gene82604:intron | 50.0% | |
| GGAGCGGTTGAAGACTAATG+AGG | - | chr3.1:36080071-36080090 | MS.gene82604:intron | 50.0% | |
| GGTATGCTGGTGGAAAGTCA+AGG | - | chr3.1:36079486-36079505 | MS.gene82604:CDS | 50.0% | |
| GTTGGAGGAGTCGACAAGAA+AGG | - | chr3.1:36079910-36079929 | MS.gene82604:intron | 50.0% | |
| TGTTGTCTGGCATGTGCGAA+TGG | - | chr3.1:36078622-36078641 | MS.gene82604:CDS | 50.0% | |
| ! | TGCACACAAGAGTGCAGTCA+TGG | + | chr3.1:36078473-36078492 | None:intergenic | 50.0% |
| !! | CTTTGGTGGACTTGGTATGC+TGG | - | chr3.1:36079473-36079492 | MS.gene82604:CDS | 50.0% |
| GCAGTCACAACAGTCACAGG+AGG | - | chr3.1:36080137-36080156 | MS.gene82604:intron | 55.0% | |
| ! | TATGGTTTGGGGACAGAGGC+AGG | - | chr3.1:36079940-36079959 | MS.gene82604:intron | 55.0% |
| !! | TGGTGGACTTGGTATGCTGG+TGG | - | chr3.1:36079476-36079495 | MS.gene82604:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 36078322 | 36080257 | 36078322 | ID=MS.gene82604 |
| chr3.1 | mRNA | 36078322 | 36080257 | 36078322 | ID=MS.gene82604.t1;Parent=MS.gene82604 |
| chr3.1 | exon | 36080240 | 36080257 | 36080240 | ID=MS.gene82604.t1.exon1;Parent=MS.gene82604.t1 |
| chr3.1 | CDS | 36080240 | 36080257 | 36080240 | ID=cds.MS.gene82604.t1;Parent=MS.gene82604.t1 |
| chr3.1 | exon | 36079363 | 36079638 | 36079363 | ID=MS.gene82604.t1.exon2;Parent=MS.gene82604.t1 |
| chr3.1 | CDS | 36079363 | 36079638 | 36079363 | ID=cds.MS.gene82604.t1;Parent=MS.gene82604.t1 |
| chr3.1 | exon | 36078322 | 36078771 | 36078322 | ID=MS.gene82604.t1.exon3;Parent=MS.gene82604.t1 |
| chr3.1 | CDS | 36078322 | 36078771 | 36078322 | ID=cds.MS.gene82604.t1;Parent=MS.gene82604.t1 |
| Gene Sequence |
| Protein sequence |
