Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82794.t1 | XP_003615261.2 | 86 | 558 | 26 | 5 | 5 | 510 | 212 | 769 | 8.30E-265 | 922.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82794.t1 | G7KBI4 | 86.0 | 558 | 26 | 5 | 5 | 510 | 212 | 769 | 6.0e-265 | 922.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053087 | MS.gene82794 | 0.832678 | 8.24E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82794.t1 | MTR_5g065900 | 85.868 | 559 | 27 | 5 | 5 | 511 | 212 | 770 | 0.0 | 961 |
| MS.gene82794.t1 | MTR_5g098710 | 41.026 | 468 | 220 | 7 | 51 | 511 | 313 | 731 | 7.18e-107 | 345 |
| MS.gene82794.t1 | MTR_6g006810 | 48.120 | 133 | 64 | 4 | 45 | 175 | 25 | 154 | 2.26e-26 | 106 |
| MS.gene82794.t1 | MTR_5g016640 | 35.333 | 150 | 31 | 5 | 363 | 511 | 17 | 101 | 8.22e-15 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82794.t1 | AT4G24610 | 66.738 | 469 | 152 | 3 | 45 | 511 | 225 | 691 | 0.0 | 633 |
| MS.gene82794.t1 | AT4G24610 | 66.738 | 469 | 152 | 3 | 45 | 511 | 225 | 691 | 0.0 | 633 |
| MS.gene82794.t1 | AT4G24610 | 66.738 | 469 | 152 | 3 | 45 | 511 | 229 | 695 | 0.0 | 633 |
| MS.gene82794.t1 | AT4G24610 | 66.738 | 469 | 152 | 3 | 45 | 511 | 229 | 695 | 0.0 | 633 |
| MS.gene82794.t1 | AT5G65440 | 55.864 | 469 | 203 | 2 | 45 | 511 | 170 | 636 | 0.0 | 555 |
| MS.gene82794.t1 | AT5G65440 | 55.864 | 469 | 203 | 2 | 45 | 511 | 170 | 636 | 0.0 | 555 |
| MS.gene82794.t1 | AT5G65440 | 55.864 | 469 | 203 | 2 | 45 | 511 | 170 | 636 | 0.0 | 555 |
| MS.gene82794.t1 | AT5G65440 | 55.864 | 469 | 203 | 2 | 45 | 511 | 129 | 595 | 0.0 | 555 |
| MS.gene82794.t1 | AT5G65440 | 55.864 | 469 | 203 | 2 | 45 | 511 | 129 | 595 | 0.0 | 555 |
| MS.gene82794.t1 | AT5G65440 | 55.864 | 469 | 203 | 2 | 45 | 511 | 129 | 595 | 0.0 | 555 |
| MS.gene82794.t1 | AT5G65440 | 55.864 | 469 | 203 | 2 | 45 | 511 | 129 | 595 | 0.0 | 554 |
| MS.gene82794.t1 | AT5G65440 | 55.864 | 469 | 203 | 2 | 45 | 511 | 170 | 636 | 0.0 | 554 |
| MS.gene82794.t1 | AT5G65440 | 52.087 | 503 | 203 | 3 | 45 | 511 | 170 | 670 | 1.21e-180 | 537 |
| MS.gene82794.t1 | AT5G48310 | 39.785 | 465 | 223 | 9 | 56 | 511 | 253 | 669 | 1.22e-100 | 327 |
| MS.gene82794.t1 | AT5G48310 | 39.785 | 465 | 223 | 9 | 56 | 511 | 280 | 696 | 3.39e-100 | 327 |
Find 115 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAGAGTTTGCTTCATATTA+TGG | 0.166810 | 6.1:-466346 | MS.gene82794:CDS |
| CTTCTGGTTGGCACGCTCTT+AGG | 0.188615 | 6.1:-467426 | MS.gene82794:CDS |
| GATTCCAAGGGAAAGCATTT+TGG | 0.208871 | 6.1:-466843 | MS.gene82794:CDS |
| GGGAGAGAAATCTCTGAAAA+TGG | 0.264330 | 6.1:+468132 | None:intergenic |
| CTATTTCCCTTCATGATAAC+AGG | 0.279831 | 6.1:+466113 | None:intergenic |
| AGTGACACATAAAATTAAAA+TGG | 0.285788 | 6.1:-467491 | MS.gene82794:CDS |
| TCCATGGACCATGTAATTCT+AGG | 0.298952 | 6.1:+466380 | None:intergenic |
| CAGTCATGCAGCTCCTGTTT+TGG | 0.307799 | 6.1:-465557 | MS.gene82794:CDS |
| CAGTTTCTGTCGCTACTTCC+AGG | 0.309945 | 6.1:-465476 | MS.gene82794:CDS |
| TTCACCATTAGCTCCTCTTC+TGG | 0.318680 | 6.1:+467727 | None:intergenic |
| ATAAAATAACTTACAACATA+TGG | 0.335183 | 6.1:+466975 | None:intergenic |
| AGAAGTTGCAATGAAAGTTC+AGG | 0.359320 | 6.1:-466419 | MS.gene82794:CDS |
| TTAACAGCCGGTTCCAAAAC+AGG | 0.371139 | 6.1:+465544 | None:intergenic |
| AAATCATCTCCAAGACTATC+TGG | 0.373542 | 6.1:+466882 | None:intergenic |
| ATGAAAATGGATTTAATGTC+TGG | 0.381784 | 6.1:-468812 | None:intergenic |
| TTGCAGTCAAAACTATCTTC+TGG | 0.383266 | 6.1:-467442 | MS.gene82794:CDS |
| GTAGCGACAGAAACTGGTTT+TGG | 0.383783 | 6.1:+465483 | None:intergenic |
| TGTGTCAGGGAACCATTTGC+AGG | 0.387579 | 6.1:+467379 | None:intergenic |
| CTGGAAGTAGCGACAGAAAC+TGG | 0.388804 | 6.1:+465477 | None:intergenic |
| CTTTACTAAGAGATGCATTT+GGG | 0.395291 | 6.1:-467856 | MS.gene82794:intron |
| CTTGATGAGTCATCTTTCTC+TGG | 0.397249 | 6.1:-465607 | MS.gene82794:CDS |
| CAAAACAGGAGCTGCATGAC+TGG | 0.397378 | 6.1:+465558 | None:intergenic |
| TCTTTACTAAGAGATGCATT+TGG | 0.398374 | 6.1:-467857 | MS.gene82794:CDS |
| GGCACGCTCTTAGGAAAGTT+CGG | 0.428629 | 6.1:-467417 | MS.gene82794:CDS |
| AATTACATGGTCCATGGAAA+TGG | 0.428646 | 6.1:-466375 | MS.gene82794:CDS |
| GGATCCAGGCTGCAACCTAA+TGG | 0.430984 | 6.1:+467006 | None:intergenic |
| GGAGAGAAATCTCTGAAAAT+GGG | 0.432737 | 6.1:+468133 | None:intergenic |
| TAGTTGAAGAAGATGCCATT+AGG | 0.435176 | 6.1:-467021 | MS.gene82794:CDS |
| GGATTTAATGTCTGGTTACA+AGG | 0.443940 | 6.1:-468804 | MS.gene82794:intron |
| ACTAATCTCCTCCTCTTCCT+CGG | 0.448136 | 6.1:+468111 | None:intergenic |
| GTACCACATTTGCCTGCAAA+TGG | 0.452983 | 6.1:-467391 | MS.gene82794:CDS |
| GAGCCAGACCATGAGCTTGT+TGG | 0.456837 | 6.1:-466655 | MS.gene82794:CDS |
| AACAGCAGATTGCCTTAACT+TGG | 0.461204 | 6.1:-466153 | MS.gene82794:CDS |
| AGATTTCTCTCCCGAGGAAG+AGG | 0.462224 | 6.1:-468122 | MS.gene82794:CDS |
| GCAGATTATATACCAAGTTA+AGG | 0.465872 | 6.1:+466141 | None:intergenic |
| ACCTTGCACAGCTTCGTAAG+AGG | 0.471694 | 6.1:+467261 | None:intergenic |
| AGATGACAATAGTCATCTTA+AGG | 0.472987 | 6.1:-466596 | MS.gene82794:intron |
| CGCTATATACAACAAGTCTC+TGG | 0.473262 | 6.1:-467325 | MS.gene82794:CDS |
| GGCTGCTATAGCTGATAATC+CGG | 0.475819 | 6.1:-466802 | MS.gene82794:intron |
| TTACAACATATGGACTTCAC+TGG | 0.488136 | 6.1:+466985 | None:intergenic |
| TCTTATCAGAATCGACTACT+AGG | 0.490024 | 6.1:-465688 | MS.gene82794:intron |
| TTCTGTCGCTACTTCCAGGT+TGG | 0.492464 | 6.1:-465472 | MS.gene82794:CDS |
| GAAGTTGCAATGAAAGTTCA+GGG | 0.494648 | 6.1:-466418 | MS.gene82794:CDS |
| ACGCCCAAAATGCTTTCCCT+TGG | 0.498791 | 6.1:+466839 | None:intergenic |
| GGAAGAGGAGGAGATTAGTA+AGG | 0.501309 | 6.1:-468107 | MS.gene82794:CDS |
| TGCTAGCATGCACATATGCC+AGG | 0.504458 | 6.1:+467350 | None:intergenic |
| TCAACCAGAAGAGGAGCTAA+TGG | 0.506702 | 6.1:-467731 | MS.gene82794:CDS |
| TTGCCAACAAGCTCATGGTC+TGG | 0.507971 | 6.1:+466652 | None:intergenic |
| CTAATCTCCTCCTCTTCCTC+GGG | 0.508014 | 6.1:+468112 | None:intergenic |
| GAACTCAAGTTTCTCCAACC+TGG | 0.514162 | 6.1:+465458 | None:intergenic |
| ATATGGACTTCACTGGATCC+AGG | 0.515067 | 6.1:+466992 | None:intergenic |
| TCACAAGCAGTGTAAGTGTA+AGG | 0.517666 | 6.1:-467909 | MS.gene82794:CDS |
| TATTGAAGTTCAAGATTCCA+AGG | 0.517716 | 6.1:-466856 | MS.gene82794:CDS |
| AAGTTGGTGTAACAACTTTG+CGG | 0.517995 | 6.1:-467294 | MS.gene82794:CDS |
| GCAGTACGCAAAGTCAAAGT+GGG | 0.519161 | 6.1:-467550 | MS.gene82794:intron |
| TGATACCTTGCATGAAATGT+TGG | 0.522674 | 6.1:+468069 | None:intergenic |
| GTGAAGGCAAAGACGCGCAC+AGG | 0.524685 | 6.1:+467928 | None:intergenic |
| TTGACTGCAAATTTGAGAAG+TGG | 0.525517 | 6.1:+467455 | None:intergenic |
| AAAACTTATTGGCAAGATGA+AGG | 0.526439 | 6.1:-467659 | MS.gene82794:CDS |
| GTCTCTGGACTCCTAAAAGT+TGG | 0.532031 | 6.1:-467310 | MS.gene82794:CDS |
| GCTTGCACCTGTTATCATGA+AGG | 0.534068 | 6.1:-466120 | MS.gene82794:CDS |
| AGCTTGTAAAGTTTAACAGC+CGG | 0.536736 | 6.1:+465532 | None:intergenic |
| ACCTAGAATTACATGGTCCA+TGG | 0.537176 | 6.1:-466381 | MS.gene82794:CDS |
| AAGTTCAGGGCTTTCAGCAA+AGG | 0.539878 | 6.1:-466405 | MS.gene82794:CDS |
| ATCTTTCTCTGGTATCGTTG+AGG | 0.540922 | 6.1:-465596 | MS.gene82794:CDS |
| GCCTTCCAACATTTCATGCA+AGG | 0.540987 | 6.1:-468074 | MS.gene82794:intron |
| ATGACTATTGTCATCTGCAC+TGG | 0.548196 | 6.1:+466603 | None:intergenic |
| TAGATATCTATCGTATGTCA+TGG | 0.550386 | 6.1:-466189 | MS.gene82794:CDS |
| TTCCCTGACACATAAAAGCC+TGG | 0.550827 | 6.1:-467368 | MS.gene82794:CDS |
| TGCTCTTGGGCCATGGTATG+CGG | 0.552492 | 6.1:-467966 | MS.gene82794:CDS |
| TACACTTACACTGCTTGTGA+AGG | 0.558164 | 6.1:+467912 | None:intergenic |
| GATGCCATTAGGTTGCAGCC+TGG | 0.561207 | 6.1:-467010 | MS.gene82794:CDS |
| GACATGCTACAGCCAGTAGG+AGG | 0.562749 | 6.1:+467520 | None:intergenic |
| TATCAGCTATAGCAGCCACT+TGG | 0.565413 | 6.1:+466808 | None:intergenic |
| CTTGCACCTGTTATCATGAA+GGG | 0.565811 | 6.1:-466119 | MS.gene82794:CDS |
| GAACCATTTGCAGGCAAATG+TGG | 0.565898 | 6.1:+467388 | None:intergenic |
| GAGCTAATGGTGAAATGCAA+TGG | 0.566880 | 6.1:-467718 | MS.gene82794:CDS |
| GTATCTTGCCAACAAGCTCA+TGG | 0.570307 | 6.1:+466647 | None:intergenic |
| GGAGCTGCATGACTGGATGC+TGG | 0.571659 | 6.1:+465565 | None:intergenic |
| CAAAGGAACCTAGAATTACA+TGG | 0.575331 | 6.1:-466388 | MS.gene82794:CDS |
| TCTGTCAAGAGCCATTTCCA+TGG | 0.578372 | 6.1:+466364 | None:intergenic |
| TGCAGTACGCAAAGTCAAAG+TGG | 0.581751 | 6.1:-467551 | MS.gene82794:intron |
| TCCTCTTACGAAGCTGTGCA+AGG | 0.583397 | 6.1:-467262 | MS.gene82794:intron |
| AGTCAAAACTATCTTCTGGT+TGG | 0.585669 | 6.1:-467438 | MS.gene82794:CDS |
| AGTGCTTCTTCAACCAGAAG+AGG | 0.591826 | 6.1:-467740 | MS.gene82794:CDS |
| AAGTTAAGGCAATCTGCTGT+TGG | 0.596013 | 6.1:+466155 | None:intergenic |
| CAATGGAGAACTTTCTAGTG+AGG | 0.596450 | 6.1:-467701 | MS.gene82794:CDS |
| TCATTGCAACTTCTAGAACC+AGG | 0.599580 | 6.1:+466428 | None:intergenic |
| TTTCTCTCCCGAGGAAGAGG+AGG | 0.599760 | 6.1:-468119 | MS.gene82794:CDS |
| AGATTAGTAAGGAAAATCAA+TGG | 0.605827 | 6.1:-468096 | MS.gene82794:CDS |
| GAGAGAAATCTCTGAAAATG+GGG | 0.614346 | 6.1:+468134 | None:intergenic |
| TCACGATATCTTATCTCCTG+AGG | 0.617999 | 6.1:-465506 | MS.gene82794:CDS |
| CAGTACGCAAAGTCAAAGTG+GGG | 0.626243 | 6.1:-467549 | MS.gene82794:CDS |
| ATTGAAGTTCAAGATTCCAA+GGG | 0.630054 | 6.1:-466855 | MS.gene82794:CDS |
| AATGGAGAACTTTCTAGTGA+GGG | 0.631445 | 6.1:-467700 | MS.gene82794:CDS |
| AACTTCTTTGAGCCACCAAG+AGG | 0.633554 | 6.1:-466087 | MS.gene82794:intron |
| TTTCAGAGATTTCTCTCCCG+AGG | 0.638457 | 6.1:-468128 | MS.gene82794:CDS |
| ATGTTGATGATACCTCTTGG+TGG | 0.638496 | 6.1:+466075 | None:intergenic |
| TGGAATGTTGTCTGATGATG+AGG | 0.638983 | 6.1:-468178 | MS.gene82794:CDS |
| CTGAGATATATACGAAGCTG+AGG | 0.640658 | 6.1:-466318 | MS.gene82794:intron |
| CAAGCTCATGGTCTGGCTCG+CGG | 0.647022 | 6.1:+466659 | None:intergenic |
| TCGACTACTAGGAGAGACCA+AGG | 0.647615 | 6.1:-465677 | MS.gene82794:CDS |
| AGTCTGACAAAGTACGCTGG+TGG | 0.654966 | 6.1:-466690 | MS.gene82794:CDS |
| TATGCAATTACCGCATACCA+TGG | 0.657964 | 6.1:+467956 | None:intergenic |
| ATTGGCAAGATGAAGGTGCA+AGG | 0.662707 | 6.1:-467652 | MS.gene82794:intron |
| ACCTTGCATGAAATGTTGGA+AGG | 0.664073 | 6.1:+468073 | None:intergenic |
| AAGGCAATCTGCTGTTGGTG+TGG | 0.664226 | 6.1:+466160 | None:intergenic |
| GATGACATGCTACAGCCAGT+AGG | 0.673386 | 6.1:+467517 | None:intergenic |
| TGGGCGTGTTCTTGTCCAAG+TGG | 0.675367 | 6.1:-466823 | MS.gene82794:CDS |
| ACATGCTACAGCCAGTAGGA+GGG | 0.676190 | 6.1:+467521 | None:intergenic |
| GGAGACAGTTGTATATGACC+TGG | 0.679123 | 6.1:-466446 | MS.gene82794:CDS |
| AACAGTCTGACAAAGTACGC+TGG | 0.679236 | 6.1:-466693 | MS.gene82794:intron |
| GTTGCAGTGTGGTTCTGTAG+CGG | 0.681208 | 6.1:-466467 | MS.gene82794:intron |
| AGAGAAATCTCTGAAAATGG+GGG | 0.712545 | 6.1:+468135 | None:intergenic |
| AGTACGCAAAGTCAAAGTGG+GGG | 0.736804 | 6.1:-467548 | MS.gene82794:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACTTATACAAATGAAAAA+TGG | + | chr6.1:467148-467167 | None:intergenic | 15.0% |
| !! | AAATGCAATAAAAATATTAC+CGG | + | chr6.1:467488-467507 | None:intergenic | 15.0% |
| !! | AACTTATACAAATGAAAAAT+GGG | + | chr6.1:467147-467166 | None:intergenic | 15.0% |
| !! | AATAAATTAAATATTTCAGC+AGG | + | chr6.1:468000-468019 | None:intergenic | 15.0% |
| !! | ATAAAATAACTTACAACATA+TGG | + | chr6.1:467296-467315 | None:intergenic | 15.0% |
| !! | TATATTATCATATATGCTTA+TGG | + | chr6.1:466262-466281 | None:intergenic | 15.0% |
| !!! | ACAAAATTTTCTCAATTTTT+TGG | - | chr6.1:465791-465810 | MS.gene82794:intron | 15.0% |
| !! | AAACTTTGTCTAAATTATTG+TGG | - | chr6.1:468020-468039 | MS.gene82794:intron | 20.0% |
| !! | AATTATTGAAGAGAGTAATT+AGG | + | chr6.1:465502-465521 | None:intergenic | 20.0% |
| !! | AGACAGTAAAATGATATATT+AGG | + | chr6.1:467776-467795 | None:intergenic | 20.0% |
| !! | AGTGACACATAAAATTAAAA+TGG | - | chr6.1:466777-466796 | MS.gene82794:intron | 20.0% |
| !! | TCAAATAAATCAATTCAAAC+AGG | + | chr6.1:468307-468326 | None:intergenic | 20.0% |
| !!! | ATGTATTATACATTTGCTAT+AGG | - | chr6.1:467723-467742 | MS.gene82794:CDS | 20.0% |
| !!! | TATTTTAATGTAACTACATG+TGG | + | chr6.1:465933-465952 | None:intergenic | 20.0% |
| !!! | TTAATCATTGTTTTTGAAAG+AGG | - | chr6.1:465722-465741 | MS.gene82794:intron | 20.0% |
| !!! | TTTGTTTTAAGATCAACTAT+GGG | - | chr6.1:468281-468300 | MS.gene82794:intron | 20.0% |
| !!! | TTTTGTTTTAAGATCAACTA+TGG | - | chr6.1:468280-468299 | MS.gene82794:intron | 20.0% |
| ! | AATATAATTCACCATTATGC+TGG | - | chr6.1:467329-467348 | MS.gene82794:CDS | 25.0% |
| ! | AATATATTCAACCAGCATAA+TGG | + | chr6.1:467343-467362 | None:intergenic | 25.0% |
| ! | AGATTAGTAAGGAAAATCAA+TGG | - | chr6.1:466172-466191 | MS.gene82794:CDS | 25.0% |
| ! | CAATGATCATTACTAGATTA+GGG | - | chr6.1:465696-465715 | MS.gene82794:intron | 25.0% |
| ! | CCTAAACTGAAAAAACTTAT+TGG | - | chr6.1:466598-466617 | MS.gene82794:CDS | 25.0% |
| ! | CTTATCTAATACGTTCAATT+TGG | - | chr6.1:468554-468573 | MS.gene82794:intron | 25.0% |
| ! | GGATAAACAGTTTAATTAAG+TGG | + | chr6.1:468458-468477 | None:intergenic | 25.0% |
| ! | TAAATTACATCAACACTTGA+AGG | + | chr6.1:466482-466501 | None:intergenic | 25.0% |
| ! | TCAATGATCATTACTAGATT+AGG | - | chr6.1:465695-465714 | MS.gene82794:intron | 25.0% |
| !! | ATATCATTTTACTGTCTTTG+TGG | - | chr6.1:467779-467798 | MS.gene82794:intron | 25.0% |
| !! | CATTCATTTTCCAAAAACAT+TGG | + | chr6.1:466390-466409 | None:intergenic | 25.0% |
| !! | TTTTATTATCCATGCCTTAA+GGG | - | chr6.1:467056-467075 | MS.gene82794:CDS | 25.0% |
| !! | TTTTTATTATCCATGCCTTA+AGG | - | chr6.1:467055-467074 | MS.gene82794:CDS | 25.0% |
| !!! | CCAATAAGTTTTTTCAGTTT+AGG | + | chr6.1:466601-466620 | None:intergenic | 25.0% |
| AAAACTTATTGGCAAGATGA+AGG | - | chr6.1:466609-466628 | MS.gene82794:CDS | 30.0% | |
| AGATGACAATAGTCATCTTA+AGG | - | chr6.1:467672-467691 | MS.gene82794:CDS | 30.0% | |
| ATAGCACAAATCACAAAGTT+AGG | + | chr6.1:466056-466075 | None:intergenic | 30.0% | |
| ATTGAAGTTCAAGATTCCAA+GGG | - | chr6.1:467413-467432 | MS.gene82794:CDS | 30.0% | |
| CTTTACTAAGAGATGCATTT+GGG | - | chr6.1:466412-466431 | MS.gene82794:CDS | 30.0% | |
| GAATGAAATACTATGTAGCA+CGG | - | chr6.1:465846-465865 | MS.gene82794:intron | 30.0% | |
| GCAGATTATATACCAAGTTA+AGG | + | chr6.1:468130-468149 | None:intergenic | 30.0% | |
| GTCAACATACGATATTTAGT+TGG | - | chr6.1:468496-468515 | MS.gene82794:intron | 30.0% | |
| TAGATATCTATCGTATGTCA+TGG | - | chr6.1:468079-468098 | MS.gene82794:CDS | 30.0% | |
| TATTGAAGTTCAAGATTCCA+AGG | - | chr6.1:467412-467431 | MS.gene82794:CDS | 30.0% | |
| TCACTTTCACACATTGTTAT+TGG | - | chr6.1:465955-465974 | MS.gene82794:intron | 30.0% | |
| TCTTTACTAAGAGATGCATT+TGG | - | chr6.1:466411-466430 | MS.gene82794:CDS | 30.0% | |
| TTTATTATCCATGCCTTAAG+GGG | - | chr6.1:467057-467076 | MS.gene82794:CDS | 30.0% | |
| ! | AAGTTGTTACACCAACTTTT+AGG | + | chr6.1:466972-466991 | None:intergenic | 30.0% |
| ! | ACAGAGTTTGCTTCATATTA+TGG | - | chr6.1:467922-467941 | MS.gene82794:CDS | 30.0% |
| ! | TATCTGTTCAATTTTGTCCT+TGG | + | chr6.1:468611-468630 | None:intergenic | 30.0% |
| !! | ATCGTATGTTGACTTGTATA+TGG | + | chr6.1:468489-468508 | None:intergenic | 30.0% |
| AAATCATCTCCAAGACTATC+TGG | + | chr6.1:467389-467408 | None:intergenic | 35.0% | |
| AATTACATGGTCCATGGAAA+TGG | - | chr6.1:467893-467912 | MS.gene82794:CDS | 35.0% | |
| ACAGTGATCATGACTAGATT+AGG | - | chr6.1:465577-465596 | MS.gene82794:CDS | 35.0% | |
| AGAAGTTGCAATGAAAGTTC+AGG | - | chr6.1:467849-467868 | MS.gene82794:intron | 35.0% | |
| AGCTTGTAAAGTTTAACAGC+CGG | + | chr6.1:468739-468758 | None:intergenic | 35.0% | |
| AGTCAAAACTATCTTCTGGT+TGG | - | chr6.1:466830-466849 | MS.gene82794:CDS | 35.0% | |
| ATGTCACAAAAGACTCACTA+TGG | + | chr6.1:466687-466706 | None:intergenic | 35.0% | |
| CAAAGGAACCTAGAATTACA+TGG | - | chr6.1:467880-467899 | MS.gene82794:CDS | 35.0% | |
| CAGTGATCATGACTAGATTA+GGG | - | chr6.1:465578-465597 | MS.gene82794:CDS | 35.0% | |
| CTATTTCCCTTCATGATAAC+AGG | + | chr6.1:468158-468177 | None:intergenic | 35.0% | |
| GAAGTTGCAATGAAAGTTCA+GGG | - | chr6.1:467850-467869 | MS.gene82794:intron | 35.0% | |
| GCTTCATAGGTGAAATATCT+TGG | - | chr6.1:466020-466039 | MS.gene82794:intron | 35.0% | |
| GGATTTAATGTCTGGTTACA+AGG | - | chr6.1:465464-465483 | MS.gene82794:CDS | 35.0% | |
| TAGTTGAAGAAGATGCCATT+AGG | - | chr6.1:467247-467266 | MS.gene82794:intron | 35.0% | |
| TCTCTGATGATATACACATG+CGG | + | chr6.1:467197-467216 | None:intergenic | 35.0% | |
| TCTTATCAGAATCGACTACT+AGG | - | chr6.1:468580-468599 | MS.gene82794:intron | 35.0% | |
| TGATACCTTGCATGAAATGT+TGG | + | chr6.1:466202-466221 | None:intergenic | 35.0% | |
| TTAATGATCACCACTCAAAC+AGG | + | chr6.1:467531-467550 | None:intergenic | 35.0% | |
| TTACAACATATGGACTTCAC+TGG | + | chr6.1:467286-467305 | None:intergenic | 35.0% | |
| TTGACTGCAAATTTGAGAAG+TGG | + | chr6.1:466816-466835 | None:intergenic | 35.0% | |
| TTGCAGTCAAAACTATCTTC+TGG | - | chr6.1:466826-466845 | MS.gene82794:CDS | 35.0% | |
| ! | AATGGAGAACTTTCTAGTGA+GGG | - | chr6.1:466568-466587 | MS.gene82794:intron | 35.0% |
| ! | AGAGAAATCTCTGAAAATGG+GGG | + | chr6.1:466136-466155 | None:intergenic | 35.0% |
| ! | GAATTCTTTTCAGTGCTCTT+GGG | - | chr6.1:466289-466308 | MS.gene82794:intron | 35.0% |
| ! | GAGAGAAATCTCTGAAAATG+GGG | + | chr6.1:466137-466156 | None:intergenic | 35.0% |
| ! | GGAGAGAAATCTCTGAAAAT+GGG | + | chr6.1:466138-466157 | None:intergenic | 35.0% |
| ! | GTACTTTGTCAGACTGTTTT+CGG | + | chr6.1:467573-467592 | None:intergenic | 35.0% |
| ! | TAAGGAAGCTCCAATGTTTT+TGG | - | chr6.1:466377-466396 | MS.gene82794:CDS | 35.0% |
| ! | TACAGTTTTCCAGATAGTCT+TGG | - | chr6.1:467377-467396 | MS.gene82794:CDS | 35.0% |
| ! | TGAATTCTTTTCAGTGCTCT+TGG | - | chr6.1:466288-466307 | MS.gene82794:intron | 35.0% |
| ! | TGCTATGAGAATTTTCAGAG+TGG | - | chr6.1:466070-466089 | MS.gene82794:intron | 35.0% |
| ! | TTCCAACATTTTTCCCCTTA+AGG | + | chr6.1:467073-467092 | None:intergenic | 35.0% |
| !! | AAGTTGGTGTAACAACTTTG+CGG | - | chr6.1:466974-466993 | MS.gene82794:intron | 35.0% |
| !! | GATATGTTGATGATACCTCT+TGG | + | chr6.1:468199-468218 | None:intergenic | 35.0% |
| !!! | ATTCCAAGGGAAAGCATTTT+GGG | - | chr6.1:467426-467445 | MS.gene82794:CDS | 35.0% |
| AACACGTGTCAATGACATGA+CGG | - | chr6.1:465893-465912 | MS.gene82794:intron | 40.0% | |
| AACAGCAGATTGCCTTAACT+TGG | - | chr6.1:468115-468134 | MS.gene82794:CDS | 40.0% | |
| AAGTTAAGGCAATCTGCTGT+TGG | + | chr6.1:468116-468135 | None:intergenic | 40.0% | |
| ACCTAGAATTACATGGTCCA+TGG | - | chr6.1:467887-467906 | MS.gene82794:CDS | 40.0% | |
| ACCTTGCATGAAATGTTGGA+AGG | + | chr6.1:466198-466217 | None:intergenic | 40.0% | |
| ATCTTTCTCTGGTATCGTTG+AGG | - | chr6.1:468672-468691 | MS.gene82794:intron | 40.0% | |
| ATGACTATTGTCATCTGCAC+TGG | + | chr6.1:467668-467687 | None:intergenic | 40.0% | |
| CGCTATATACAACAAGTCTC+TGG | - | chr6.1:466943-466962 | MS.gene82794:intron | 40.0% | |
| CTGAGATATATACGAAGCTG+AGG | - | chr6.1:467950-467969 | MS.gene82794:CDS | 40.0% | |
| CTTGATGAGTCATCTTTCTC+TGG | - | chr6.1:468661-468680 | MS.gene82794:intron | 40.0% | |
| CTTGCACCTGTTATCATGAA+GGG | - | chr6.1:468149-468168 | MS.gene82794:CDS | 40.0% | |
| GAGCTAATGGTGAAATGCAA+TGG | - | chr6.1:466550-466569 | MS.gene82794:intron | 40.0% | |
| GTTATTAGTGCCTGTTTGAG+TGG | - | chr6.1:467518-467537 | MS.gene82794:CDS | 40.0% | |
| TACACTTACACTGCTTGTGA+AGG | + | chr6.1:466359-466378 | None:intergenic | 40.0% | |
| TATGCAATTACCGCATACCA+TGG | + | chr6.1:466315-466334 | None:intergenic | 40.0% | |
| TATTTGAGCACGTCAACTTG+TGG | - | chr6.1:468320-468339 | MS.gene82794:intron | 40.0% | |
| TCACAAGCAGTGTAAGTGTA+AGG | - | chr6.1:466359-466378 | MS.gene82794:CDS | 40.0% | |
| TCACGATATCTTATCTCCTG+AGG | - | chr6.1:468762-468781 | MS.gene82794:intron | 40.0% | |
| TCCATGGACCATGTAATTCT+AGG | + | chr6.1:467891-467910 | None:intergenic | 40.0% | |
| TGCCTTAAGGGGAAAAATGT+TGG | - | chr6.1:467068-467087 | MS.gene82794:intron | 40.0% | |
| ! | ACATTTTTCCCCTTAAGGCA+TGG | + | chr6.1:467068-467087 | None:intergenic | 40.0% |
| ! | CAATGGAGAACTTTCTAGTG+AGG | - | chr6.1:466567-466586 | MS.gene82794:intron | 40.0% |
| ! | GGGAGAGAAATCTCTGAAAA+TGG | + | chr6.1:466139-466158 | None:intergenic | 40.0% |
| ! | TGGAATGTTGTCTGATGATG+AGG | - | chr6.1:466090-466109 | MS.gene82794:CDS | 40.0% |
| !! | ATGTTGATGATACCTCTTGG+TGG | + | chr6.1:468196-468215 | None:intergenic | 40.0% |
| !! | CACTTGCTACTGCTTCTTTT+GGG | - | chr6.1:465822-465841 | MS.gene82794:intron | 40.0% |
| !! | TCATTGCAACTTCTAGAACC+AGG | + | chr6.1:467843-467862 | None:intergenic | 40.0% |
| !!! | GATTCCAAGGGAAAGCATTT+TGG | - | chr6.1:467425-467444 | MS.gene82794:CDS | 40.0% |
| AACAGTCTGACAAAGTACGC+TGG | - | chr6.1:467575-467594 | MS.gene82794:intron | 45.0% | |
| AACTTCTTTGAGCCACCAAG+AGG | - | chr6.1:468181-468200 | MS.gene82794:CDS | 45.0% | |
| AAGTTCAGGGCTTTCAGCAA+AGG | - | chr6.1:467863-467882 | MS.gene82794:CDS | 45.0% | |
| ACTAATCTCCTCCTCTTCCT+CGG | + | chr6.1:466160-466179 | None:intergenic | 45.0% | |
| ACTATGTAGCACGGACACTT+CGG | - | chr6.1:465855-465874 | MS.gene82794:intron | 45.0% | |
| AGTACGCAAAGTCAAAGTGG+GGG | - | chr6.1:466720-466739 | MS.gene82794:intron | 45.0% | |
| AGTGCTTCTTCAACCAGAAG+AGG | - | chr6.1:466528-466547 | MS.gene82794:intron | 45.0% | |
| ATATGGACTTCACTGGATCC+AGG | + | chr6.1:467279-467298 | None:intergenic | 45.0% | |
| CAGTACGCAAAGTCAAAGTG+GGG | - | chr6.1:466719-466738 | MS.gene82794:intron | 45.0% | |
| GAACCATTTGCAGGCAAATG+TGG | + | chr6.1:466883-466902 | None:intergenic | 45.0% | |
| GACTTGTATATGGCTACGCT+TGG | + | chr6.1:468479-468498 | None:intergenic | 45.0% | |
| GCAGTACGCAAAGTCAAAGT+GGG | - | chr6.1:466718-466737 | MS.gene82794:intron | 45.0% | |
| GCCTTCCAACATTTCATGCA+AGG | - | chr6.1:466194-466213 | MS.gene82794:intron | 45.0% | |
| GCTTGCACCTGTTATCATGA+AGG | - | chr6.1:468148-468167 | MS.gene82794:CDS | 45.0% | |
| GGAAGAGGAGGAGATTAGTA+AGG | - | chr6.1:466161-466180 | MS.gene82794:CDS | 45.0% | |
| GGAGACAGTTGTATATGACC+TGG | - | chr6.1:467822-467841 | MS.gene82794:intron | 45.0% | |
| GGCTGCTATAGCTGATAATC+CGG | - | chr6.1:467466-467485 | MS.gene82794:CDS | 45.0% | |
| GTACCACATTTGCCTGCAAA+TGG | - | chr6.1:466877-466896 | MS.gene82794:CDS | 45.0% | |
| GTATCTTGCCAACAAGCTCA+TGG | + | chr6.1:467624-467643 | None:intergenic | 45.0% | |
| GTCATGTCATTGACACGTGT+TGG | + | chr6.1:465894-465913 | None:intergenic | 45.0% | |
| GTCTCTGGACTCCTAAAAGT+TGG | - | chr6.1:466958-466977 | MS.gene82794:intron | 45.0% | |
| TACGAAGCTGTGCAAGGTAT+GGG | - | chr6.1:467012-467031 | MS.gene82794:CDS | 45.0% | |
| TATCAGCTATAGCAGCCACT+TGG | + | chr6.1:467463-467482 | None:intergenic | 45.0% | |
| TCAACCAGAAGAGGAGCTAA+TGG | - | chr6.1:466537-466556 | MS.gene82794:intron | 45.0% | |
| TCTGTCAAGAGCCATTTCCA+TGG | + | chr6.1:467907-467926 | None:intergenic | 45.0% | |
| TGCAGTACGCAAAGTCAAAG+TGG | - | chr6.1:466717-466736 | MS.gene82794:intron | 45.0% | |
| TTACGAAGCTGTGCAAGGTA+TGG | - | chr6.1:467011-467030 | MS.gene82794:CDS | 45.0% | |
| TTCACCATTAGCTCCTCTTC+TGG | + | chr6.1:466544-466563 | None:intergenic | 45.0% | |
| TTCCCTGACACATAAAAGCC+TGG | - | chr6.1:466900-466919 | MS.gene82794:intron | 45.0% | |
| TTTCAGAGATTTCTCTCCCG+AGG | - | chr6.1:466140-466159 | MS.gene82794:CDS | 45.0% | |
| ! | ATGCCAGGCTTTTATGTGTC+AGG | + | chr6.1:466906-466925 | None:intergenic | 45.0% |
| ! | ATTGGCAAGATGAAGGTGCA+AGG | - | chr6.1:466616-466635 | MS.gene82794:CDS | 45.0% |
| ! | TGCCAGGCTTTTATGTGTCA+GGG | + | chr6.1:466905-466924 | None:intergenic | 45.0% |
| ! | TTAACAGCCGGTTCCAAAAC+AGG | + | chr6.1:468727-468746 | None:intergenic | 45.0% |
| !! | GCACTTGCTACTGCTTCTTT+TGG | - | chr6.1:465821-465840 | MS.gene82794:intron | 45.0% |
| !! | GTAGCGACAGAAACTGGTTT+TGG | + | chr6.1:468788-468807 | None:intergenic | 45.0% |
| AAGGCAATCTGCTGTTGGTG+TGG | + | chr6.1:468111-468130 | None:intergenic | 50.0% | |
| ACATGCTACAGCCAGTAGGA+GGG | + | chr6.1:466750-466769 | None:intergenic | 50.0% | |
| ACCTTGCACAGCTTCGTAAG+AGG | + | chr6.1:467010-467029 | None:intergenic | 50.0% | |
| ACGCCCAAAATGCTTTCCCT+TGG | + | chr6.1:467432-467451 | None:intergenic | 50.0% | |
| AGATTTCTCTCCCGAGGAAG+AGG | - | chr6.1:466146-466165 | MS.gene82794:CDS | 50.0% | |
| AGTCTGACAAAGTACGCTGG+TGG | - | chr6.1:467578-467597 | MS.gene82794:intron | 50.0% | |
| CAAAACAGGAGCTGCATGAC+TGG | + | chr6.1:468713-468732 | None:intergenic | 50.0% | |
| CAGTTTCTGTCGCTACTTCC+AGG | - | chr6.1:468792-468811 | MS.gene82794:intron | 50.0% | |
| CGTCTGTGTTCGTGCTTCAT+AGG | - | chr6.1:466007-466026 | MS.gene82794:intron | 50.0% | |
| CTAATCTCCTCCTCTTCCTC+GGG | + | chr6.1:466159-466178 | None:intergenic | 50.0% | |
| CTATGTAGCACGGACACTTC+GGG | - | chr6.1:465856-465875 | MS.gene82794:intron | 50.0% | |
| CTGGAAGTAGCGACAGAAAC+TGG | + | chr6.1:468794-468813 | None:intergenic | 50.0% | |
| CTGTCTTTGTGGTTGCAGTG+TGG | - | chr6.1:467790-467809 | MS.gene82794:intron | 50.0% | |
| GATGACATGCTACAGCCAGT+AGG | + | chr6.1:466754-466773 | None:intergenic | 50.0% | |
| GGCACGCTCTTAGGAAAGTT+CGG | - | chr6.1:466851-466870 | MS.gene82794:CDS | 50.0% | |
| GTAAGTGTCTGTGCTGTGTC+CGG | - | chr6.1:465979-465998 | MS.gene82794:intron | 50.0% | |
| TCCTCTTACGAAGCTGTGCA+AGG | - | chr6.1:467006-467025 | MS.gene82794:CDS | 50.0% | |
| TCGACTACTAGGAGAGACCA+AGG | - | chr6.1:468591-468610 | MS.gene82794:intron | 50.0% | |
| TGCTAGCATGCACATATGCC+AGG | + | chr6.1:466921-466940 | None:intergenic | 50.0% | |
| TGTGTCAGGGAACCATTTGC+AGG | + | chr6.1:466892-466911 | None:intergenic | 50.0% | |
| TTCTGTCGCTACTTCCAGGT+TGG | - | chr6.1:468796-468815 | MS.gene82794:intron | 50.0% | |
| TTGCCAACAAGCTCATGGTC+TGG | + | chr6.1:467619-467638 | None:intergenic | 50.0% | |
| ! | CAGTCATGCAGCTCCTGTTT+TGG | - | chr6.1:468711-468730 | MS.gene82794:intron | 50.0% |
| ! | GTTGCAGTGTGGTTCTGTAG+CGG | - | chr6.1:467801-467820 | MS.gene82794:intron | 50.0% |
| ! | TCTGAAAATGGGGGTGCACT+CGG | + | chr6.1:466127-466146 | None:intergenic | 50.0% |
| ! | TTTTCAGTGCTCTTGGGCCA+TGG | - | chr6.1:466295-466314 | MS.gene82794:intron | 50.0% |
| !! | TGACATGACGGACACTCACA+CGG | - | chr6.1:465905-465924 | MS.gene82794:intron | 50.0% |
| !!! | CAGAAACTGGTTTTGGCCTC+AGG | + | chr6.1:468781-468800 | None:intergenic | 50.0% |
| !!! | TGCAGCTCCTGTTTTGGAAC+CGG | - | chr6.1:468717-468736 | MS.gene82794:intron | 50.0% |
| CACGAACACAGACGCGATAC+CGG | + | chr6.1:466001-466020 | None:intergenic | 55.0% | |
| GACATGCTACAGCCAGTAGG+AGG | + | chr6.1:466751-466770 | None:intergenic | 55.0% | |
| GAGCCAGACCATGAGCTTGT+TGG | - | chr6.1:467613-467632 | MS.gene82794:intron | 55.0% | |
| GGATCCAGGCTGCAACCTAA+TGG | + | chr6.1:467265-467284 | None:intergenic | 55.0% | |
| TGCTCTTGGGCCATGGTATG+CGG | - | chr6.1:466302-466321 | MS.gene82794:intron | 55.0% | |
| TGGGCGTGTTCTTGTCCAAG+TGG | - | chr6.1:467445-467464 | MS.gene82794:CDS | 55.0% | |
| TTTCTCTCCCGAGGAAGAGG+AGG | - | chr6.1:466149-466168 | MS.gene82794:CDS | 55.0% | |
| ! | CTTCTGGTTGGCACGCTCTT+AGG | - | chr6.1:466842-466861 | MS.gene82794:CDS | 55.0% |
| ! | GATGCCATTAGGTTGCAGCC+TGG | - | chr6.1:467258-467277 | MS.gene82794:intron | 55.0% |
| GGAGCTGCATGACTGGATGC+TGG | + | chr6.1:468706-468725 | None:intergenic | 60.0% | |
| GTGAAGGCAAAGACGCGCAC+AGG | + | chr6.1:466343-466362 | None:intergenic | 60.0% | |
| ! | CAAGCTCATGGTCTGGCTCG+CGG | + | chr6.1:467612-467631 | None:intergenic | 60.0% |
| !! | GCACGGACACTTCGGGTTGA+AGG | - | chr6.1:465863-465882 | MS.gene82794:intron | 60.0% |
| GTGGGGGTCGACCCTCCTAC+TGG | - | chr6.1:466736-466755 | MS.gene82794:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 465462 | 468828 | 465462 | ID=MS.gene82794 |
| chr6.1 | mRNA | 465462 | 468828 | 465462 | ID=MS.gene82794.t1;Parent=MS.gene82794 |
| chr6.1 | exon | 468805 | 468828 | 468805 | ID=MS.gene82794.t1.exon1;Parent=MS.gene82794.t1 |
| chr6.1 | CDS | 468805 | 468828 | 468805 | ID=cds.MS.gene82794.t1;Parent=MS.gene82794.t1 |
| chr6.1 | exon | 468075 | 468202 | 468075 | ID=MS.gene82794.t1.exon2;Parent=MS.gene82794.t1 |
| chr6.1 | CDS | 468075 | 468202 | 468075 | ID=cds.MS.gene82794.t1;Parent=MS.gene82794.t1 |
| chr6.1 | exon | 467857 | 467988 | 467857 | ID=MS.gene82794.t1.exon3;Parent=MS.gene82794.t1 |
| chr6.1 | CDS | 467857 | 467988 | 467857 | ID=cds.MS.gene82794.t1;Parent=MS.gene82794.t1 |
| chr6.1 | exon | 467653 | 467771 | 467653 | ID=MS.gene82794.t1.exon4;Parent=MS.gene82794.t1 |
| chr6.1 | CDS | 467653 | 467771 | 467653 | ID=cds.MS.gene82794.t1;Parent=MS.gene82794.t1 |
| chr6.1 | exon | 467263 | 467568 | 467263 | ID=MS.gene82794.t1.exon5;Parent=MS.gene82794.t1 |
| chr6.1 | CDS | 467263 | 467568 | 467263 | ID=cds.MS.gene82794.t1;Parent=MS.gene82794.t1 |
| chr6.1 | exon | 466989 | 467076 | 466989 | ID=MS.gene82794.t1.exon6;Parent=MS.gene82794.t1 |
| chr6.1 | CDS | 466989 | 467076 | 466989 | ID=cds.MS.gene82794.t1;Parent=MS.gene82794.t1 |
| chr6.1 | exon | 466803 | 466908 | 466803 | ID=MS.gene82794.t1.exon7;Parent=MS.gene82794.t1 |
| chr6.1 | CDS | 466803 | 466908 | 466803 | ID=cds.MS.gene82794.t1;Parent=MS.gene82794.t1 |
| chr6.1 | exon | 466597 | 466710 | 466597 | ID=MS.gene82794.t1.exon8;Parent=MS.gene82794.t1 |
| chr6.1 | CDS | 466597 | 466710 | 466597 | ID=cds.MS.gene82794.t1;Parent=MS.gene82794.t1 |
| chr6.1 | exon | 466319 | 466482 | 466319 | ID=MS.gene82794.t1.exon9;Parent=MS.gene82794.t1 |
| chr6.1 | CDS | 466319 | 466482 | 466319 | ID=cds.MS.gene82794.t1;Parent=MS.gene82794.t1 |
| chr6.1 | exon | 466088 | 466208 | 466088 | ID=MS.gene82794.t1.exon10;Parent=MS.gene82794.t1 |
| chr6.1 | CDS | 466088 | 466208 | 466088 | ID=cds.MS.gene82794.t1;Parent=MS.gene82794.t1 |
| chr6.1 | exon | 465462 | 465701 | 465462 | ID=MS.gene82794.t1.exon11;Parent=MS.gene82794.t1 |
| chr6.1 | CDS | 465462 | 465701 | 465462 | ID=cds.MS.gene82794.t1;Parent=MS.gene82794.t1 |
| Gene Sequence |
| Protein sequence |
