Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82799.t1 | XP_013450732.1 | 95.4 | 348 | 15 | 1 | 5 | 352 | 18 | 364 | 2.80E-187 | 664.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82799.t1 | Q93ZC9 | 71.8 | 347 | 97 | 1 | 4 | 350 | 17 | 362 | 4.3e-144 | 512.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82799.t1 | I3SE96 | 95.4 | 348 | 15 | 1 | 5 | 352 | 18 | 364 | 2.0e-187 | 664.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene055765 | MS.gene82799 | 0.803747 | 3.01E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82799.t1 | MTR_6g004430 | 95.429 | 350 | 15 | 1 | 3 | 352 | 16 | 364 | 0.0 | 686 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene82799.t1 | AT3G01640 | 71.758 | 347 | 97 | 1 | 4 | 350 | 33 | 378 | 0.0 | 531 |
MS.gene82799.t1 | AT3G01640 | 71.758 | 347 | 97 | 1 | 4 | 350 | 17 | 362 | 0.0 | 530 |
MS.gene82799.t1 | AT5G14470 | 69.341 | 349 | 105 | 2 | 3 | 350 | 16 | 363 | 0.0 | 506 |
Find 83 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GATCGGGTGGCGCAAGTTTA+TGG | 0.220839 | 6.1:-489383 | MS.gene82799:CDS |
ATCATAGGAGAGAGTGAAAT+TGG | 0.247472 | 6.1:+490606 | None:intergenic |
GTGTTTCAGAGTGGACTTTC+GGG | 0.255531 | 6.1:-489542 | MS.gene82799:intron |
CTTAACGGTTGCAAAGAAAT+TGG | 0.270327 | 6.1:+491040 | None:intergenic |
GCAACGAATCCTAGTGATTC+TGG | 0.272922 | 6.1:-489161 | MS.gene82799:CDS |
TCCTTCTCGTTTAAATGAAA+TGG | 0.303995 | 6.1:-487360 | MS.gene82799:CDS |
ATAAATGCTGAAGGTTATTA+TGG | 0.304600 | 6.1:-490709 | MS.gene82799:CDS |
TATGCAAGAGTTGGATTGTT+AGG | 0.308744 | 6.1:-491110 | MS.gene82799:CDS |
ACTAGTACATTACATCTTCA+TGG | 0.314856 | 6.1:+487328 | None:intergenic |
ACCTTCGCAGGTCAAAATTT+CGG | 0.328226 | 6.1:+488589 | None:intergenic |
TGGAGGAGTTCGATTGCTTA+TGG | 0.341365 | 6.1:-490689 | MS.gene82799:CDS |
GTTCATGAGAGCTGCTAGTT+TGG | 0.342821 | 6.1:+488611 | None:intergenic |
TTCTTGATTTCTACAAAGTT+AGG | 0.363177 | 6.1:-489484 | MS.gene82799:CDS |
AAAGAACTTGGAATAGTTGC+AGG | 0.371527 | 6.1:-489413 | MS.gene82799:CDS |
TGTGTTTCAGAGTGGACTTT+CGG | 0.376289 | 6.1:-489543 | MS.gene82799:intron |
CTTTCTCTGCGGCGAGGATA+AGG | 0.384045 | 6.1:+489432 | None:intergenic |
ACGAGGGATGTTAGTATCAT+AGG | 0.390246 | 6.1:+490591 | None:intergenic |
AATCCAAGCGATGTTTATTA+CGG | 0.415951 | 6.1:-491086 | MS.gene82799:CDS |
ATATTGTACAGGTTAATGTT+TGG | 0.421324 | 6.1:-487569 | MS.gene82799:intron |
CTCGCCGCAGAGAAAGAACT+TGG | 0.453503 | 6.1:-489425 | MS.gene82799:CDS |
GTTATGTTATGCAGGTTGAT+AGG | 0.454420 | 6.1:-490732 | MS.gene82799:intron |
CTTCTCTTCTCATCATCAAC+TGG | 0.454470 | 6.1:-490961 | MS.gene82799:intron |
TCCATTTCATTTAAACGAGA+AGG | 0.461848 | 6.1:+487359 | None:intergenic |
GAAATCAAGAAAGCAGTTCA+AGG | 0.463436 | 6.1:+489496 | None:intergenic |
ATTGGAAGGAACGAGCTTAA+CGG | 0.479671 | 6.1:+491025 | None:intergenic |
TGATACTAACATCCCTCGTC+AGG | 0.483235 | 6.1:-490587 | MS.gene82799:intron |
CATAGATAAGGTATAGAGGT+GGG | 0.483804 | 6.1:+489183 | None:intergenic |
AATGGTAGAGGTTGCTAGGA+AGG | 0.485870 | 6.1:-487516 | MS.gene82799:CDS |
TTGCCGTAATAAACATCGCT+TGG | 0.491017 | 6.1:+491083 | None:intergenic |
GGAGCCGCGTCAAAATTTAC+AGG | 0.491950 | 6.1:-487491 | MS.gene82799:CDS |
GTGCGGCAGAGGTGGCTTGA+TGG | 0.494684 | 6.1:-488717 | MS.gene82799:CDS |
CACAAAGCATATGCAAGAGT+TGG | 0.502332 | 6.1:-491119 | MS.gene82799:CDS |
TCATTTAAACGAGAAGGAAA+AGG | 0.504226 | 6.1:+487365 | None:intergenic |
AGTGGACTTTCGGGTTCTAG+TGG | 0.508326 | 6.1:-489533 | MS.gene82799:CDS |
CAAAGTTAGGCATCTAATCA+AGG | 0.511075 | 6.1:-489471 | MS.gene82799:CDS |
AGTTGCAGGTCTTCAAGATC+GGG | 0.515184 | 6.1:-489399 | MS.gene82799:CDS |
TAGGATTCGTTGCATAGATA+AGG | 0.525708 | 6.1:+489171 | None:intergenic |
GTAGAGGTTGCTAGGAAGGT+TGG | 0.526618 | 6.1:-487512 | MS.gene82799:CDS |
CTAACCTTTCCAGAATCACT+AGG | 0.530686 | 6.1:+489152 | None:intergenic |
TAGTTGCAGGTCTTCAAGAT+CGG | 0.535657 | 6.1:-489400 | MS.gene82799:CDS |
AAGGAAAACATGGATAAACT+AGG | 0.536324 | 6.1:-489242 | MS.gene82799:CDS |
GCGTCAAAATTTACAGGTAG+CGG | 0.540673 | 6.1:-487485 | MS.gene82799:CDS |
GTTGCATAGATAAGGTATAG+AGG | 0.546515 | 6.1:+489179 | None:intergenic |
GCATGGAATTTATATACCAA+TGG | 0.548230 | 6.1:-489219 | MS.gene82799:CDS |
AGGTTGAATGATGAGTTCAT+TGG | 0.552268 | 6.1:+491007 | None:intergenic |
GAGGATGAATGTCATAAAGC+AGG | 0.556500 | 6.1:-487410 | MS.gene82799:CDS |
TACATAGTAAAGTGCGGCAG+AGG | 0.557266 | 6.1:-488728 | MS.gene82799:CDS |
AACATGGATAAACTAGGGCA+TGG | 0.559912 | 6.1:-489236 | MS.gene82799:CDS |
CGAGAAGGAAAAGGTTCAAG+AGG | 0.561564 | 6.1:+487374 | None:intergenic |
TTATGGTGGACTAGTTTACA+TGG | 0.565357 | 6.1:-489366 | MS.gene82799:intron |
AAAACAGCAATTACCTTCGC+AGG | 0.567464 | 6.1:+488577 | None:intergenic |
GTGGACTTTCGGGTTCTAGT+GGG | 0.575814 | 6.1:-489532 | MS.gene82799:CDS |
ATAGTAAAGTGCGGCAGAGG+TGG | 0.578374 | 6.1:-488725 | MS.gene82799:CDS |
AGGAAAACATGGATAAACTA+GGG | 0.585507 | 6.1:-489241 | MS.gene82799:CDS |
ATCTCAAGCAAAGCTTCTTG+AGG | 0.587762 | 6.1:-487429 | MS.gene82799:CDS |
GGGAGTAGACTCAAATCCAT+TGG | 0.588527 | 6.1:+489203 | None:intergenic |
AAGTTGACAAGATCATGAGT+AGG | 0.590139 | 6.1:+490981 | None:intergenic |
ACAAGATCATGAGTAGGATG+AGG | 0.597219 | 6.1:+490987 | None:intergenic |
ATCTAATCAAGGTGGAGGTG+AGG | 0.598295 | 6.1:-489460 | MS.gene82799:CDS |
GCATAGATAAGGTATAGAGG+TGG | 0.601402 | 6.1:+489182 | None:intergenic |
TAGGCATCTAATCAAGGTGG+AGG | 0.605299 | 6.1:-489465 | MS.gene82799:CDS |
GGACTTCAACAAGGAAAACA+TGG | 0.605432 | 6.1:-489252 | MS.gene82799:CDS |
TCTGCGGCGAGGATAAGGTT+AGG | 0.606768 | 6.1:+489437 | None:intergenic |
AATGCTGAAGGTTATTATGG+AGG | 0.608746 | 6.1:-490706 | MS.gene82799:CDS |
TGTGAAATCAATGCTTGAAG+TGG | 0.615009 | 6.1:-488682 | MS.gene82799:CDS |
GAATCCTAGTGATTCTGGAA+AGG | 0.616239 | 6.1:-489156 | MS.gene82799:intron |
CAAGTTCTTTCTCTGCGGCG+AGG | 0.616905 | 6.1:+489426 | None:intergenic |
ATGTATTGCGAATGAAGGAA+AGG | 0.621662 | 6.1:-488658 | MS.gene82799:CDS |
GTGGCATGTATTGCGAATGA+AGG | 0.623156 | 6.1:-488663 | MS.gene82799:CDS |
TCAAAATTTACAGGTAGCGG+AGG | 0.625357 | 6.1:-487482 | MS.gene82799:CDS |
TGCAGGTCTTCAAGATCGGG+TGG | 0.627175 | 6.1:-489396 | MS.gene82799:CDS |
GTTGTTGCATATTGTACTGA+GGG | 0.631945 | 6.1:-487455 | MS.gene82799:CDS |
CGGGTGGCGCAAGTTTATGG+TGG | 0.637422 | 6.1:-489380 | MS.gene82799:CDS |
GTTGATAGGATAAATGCTGA+AGG | 0.640418 | 6.1:-490718 | MS.gene82799:CDS |
TGAATGATGAGTTCATTGGA+AGG | 0.645465 | 6.1:+491011 | None:intergenic |
AGATGGTTATATACCTGACG+AGG | 0.645733 | 6.1:+490574 | None:intergenic |
TATTCCAAGTTCTTTCTCTG+CGG | 0.647677 | 6.1:+489421 | None:intergenic |
ATGTTTGGAGATGATGCACT+TGG | 0.648508 | 6.1:-487554 | MS.gene82799:CDS |
TGTTGTTGCATATTGTACTG+AGG | 0.675718 | 6.1:-487456 | MS.gene82799:CDS |
AGTTAGGCATCTAATCAAGG+TGG | 0.684662 | 6.1:-489468 | MS.gene82799:CDS |
TGCAGGTACATAGTAAAGTG+CGG | 0.687169 | 6.1:-488734 | MS.gene82799:intron |
GATGGTTATATACCTGACGA+GGG | 0.721558 | 6.1:+490575 | None:intergenic |
TTGTTGCATATTGTACTGAG+GGG | 0.750693 | 6.1:-487454 | MS.gene82799:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATAATTTGAAAATTTTGAAA+GGG | - | chr6.1:490407-490426 | MS.gene82799:intron | 10.0% |
!! | CATAATAATAGATAGATAAA+TGG | + | chr6.1:488284-488303 | None:intergenic | 15.0% |
!! | TATCAGTTATAAAAATCAAA+TGG | + | chr6.1:489951-489970 | None:intergenic | 15.0% |
!!! | ATAAAATTCAAAGATTGTTT+TGG | + | chr6.1:488011-488030 | None:intergenic | 15.0% |
!!! | GATAATTTGAAAATTTTGAA+AGG | - | chr6.1:490406-490425 | MS.gene82799:intron | 15.0% |
!!! | TTATTTTAGAGAAAAGAATT+GGG | + | chr6.1:489500-489519 | None:intergenic | 15.0% |
!!! | TTCAAAATTTTCAAATTATC+CGG | + | chr6.1:490406-490425 | None:intergenic | 15.0% |
!! | AACAACATAAAAACTCTTAA+AGG | + | chr6.1:487964-487983 | None:intergenic | 20.0% |
!! | TTATAAAGTAGTAAGTCATA+TGG | - | chr6.1:488148-488167 | MS.gene82799:intron | 20.0% |
!!! | AGTGTTTTAAAAAATCAAAC+TGG | - | chr6.1:488358-488377 | MS.gene82799:intron | 20.0% |
!!! | ATTCTTTTCTCTAAAATAAG+AGG | - | chr6.1:489501-489520 | MS.gene82799:CDS | 20.0% |
!!! | ATTTTTCTTTAAACGTTCTT+TGG | - | chr6.1:490696-490715 | MS.gene82799:CDS | 20.0% |
!!! | CACTTATTTTTTTTTGAAGA+AGG | - | chr6.1:490758-490777 | MS.gene82799:intron | 20.0% |
!!! | CTTATTTTAGAGAAAAGAAT+TGG | + | chr6.1:489501-489520 | None:intergenic | 20.0% |
!!! | CTTGTATTAAACTTTGTTAT+TGG | - | chr6.1:490872-490891 | MS.gene82799:intron | 20.0% |
!!! | TAAACAATCTAGTTTAGTTT+GGG | + | chr6.1:488414-488433 | None:intergenic | 20.0% |
!!! | TTAAACAATCTAGTTTAGTT+TGG | + | chr6.1:488415-488434 | None:intergenic | 20.0% |
!!! | TTTTTCTTTAAACGTTCTTT+GGG | - | chr6.1:490697-490716 | MS.gene82799:CDS | 20.0% |
! | AAAAAATCCTGACTCTAATT+TGG | + | chr6.1:488643-488662 | None:intergenic | 25.0% |
! | AAAAATCCTGACTCTAATTT+GGG | + | chr6.1:488642-488661 | None:intergenic | 25.0% |
! | AAATAATGAATGAGTGAATC+CGG | + | chr6.1:488827-488846 | None:intergenic | 25.0% |
! | ACATCAACTTACTTATTGAT+AGG | - | chr6.1:490001-490020 | MS.gene82799:intron | 25.0% |
! | ACTAAACTAGATTGTTTAAC+TGG | - | chr6.1:488416-488435 | MS.gene82799:intron | 25.0% |
! | ATAAATGCTGAAGGTTATTA+TGG | - | chr6.1:487762-487781 | MS.gene82799:intron | 25.0% |
! | ATATTGTACAGGTTAATGTT+TGG | - | chr6.1:490902-490921 | MS.gene82799:intron | 25.0% |
! | ATCCATAAATTATAGCAAGA+TGG | + | chr6.1:487917-487936 | None:intergenic | 25.0% |
! | ATGTAATCAATCACATGTAT+AGG | + | chr6.1:487651-487670 | None:intergenic | 25.0% |
! | CAACAGATAGAAATATGAAA+AGG | + | chr6.1:488870-488889 | None:intergenic | 25.0% |
! | CATTTAATTCAAATGATCAG+TGG | - | chr6.1:487672-487691 | MS.gene82799:intron | 25.0% |
! | GTACTAATTTATTGATCAGT+AGG | - | chr6.1:490134-490153 | MS.gene82799:intron | 25.0% |
! | TCAGTATCATTACATATAGT+TGG | - | chr6.1:489918-489937 | MS.gene82799:intron | 25.0% |
! | TGATCAATAAATTAGTACAC+TGG | + | chr6.1:490132-490151 | None:intergenic | 25.0% |
! | TGTAATAGCACTATTGTAAA+AGG | + | chr6.1:489398-489417 | None:intergenic | 25.0% |
! | TTACATTCAACACAAGAAAA+AGG | + | chr6.1:488260-488279 | None:intergenic | 25.0% |
! | TTCCTATTCCTTTAATTAGT+TGG | + | chr6.1:490837-490856 | None:intergenic | 25.0% |
! | TTCTTGATTTCTACAAAGTT+AGG | - | chr6.1:488987-489006 | MS.gene82799:intron | 25.0% |
!! | AACACCATAAAGTGATATTT+TGG | - | chr6.1:489632-489651 | MS.gene82799:intron | 25.0% |
!! | AACCATCTTGCTATAATTTA+TGG | - | chr6.1:487912-487931 | MS.gene82799:intron | 25.0% |
!! | ACACCATAAAGTGATATTTT+GGG | - | chr6.1:489633-489652 | MS.gene82799:intron | 25.0% |
!! | TGATGTTTAAGTTTCAAAGT+TGG | + | chr6.1:489987-490006 | None:intergenic | 25.0% |
!! | TTGGTCTTTATATATTGTAC+AGG | - | chr6.1:490891-490910 | MS.gene82799:intron | 25.0% |
!!! | ATTAGAGTCAGGATTTTTTT+TGG | - | chr6.1:488644-488663 | MS.gene82799:CDS | 25.0% |
!!! | TTAATTGTAATTGATGATGC+AGG | - | chr6.1:489720-489739 | MS.gene82799:intron | 25.0% |
!!! | TTTTTAATGTCTCTAGAACA+TGG | + | chr6.1:488605-488624 | None:intergenic | 25.0% |
AAAAATGACTGTGTAACCTA+GGG | + | chr6.1:490682-490701 | None:intergenic | 30.0% | |
AAACAAAAGAAAGACCGTAA+GGG | + | chr6.1:488770-488789 | None:intergenic | 30.0% | |
AAGGAAAACATGGATAAACT+AGG | - | chr6.1:489229-489248 | MS.gene82799:CDS | 30.0% | |
AAGTCGGTTATGAGTATATT+AGG | + | chr6.1:490651-490670 | None:intergenic | 30.0% | |
AATCCAAGCGATGTTTATTA+CGG | - | chr6.1:487385-487404 | MS.gene82799:CDS | 30.0% | |
ACCTAGGGAAAAATTAAAGT+CGG | + | chr6.1:490667-490686 | None:intergenic | 30.0% | |
AGAAACAGAATATGCAAGTT+AGG | + | chr6.1:489426-489445 | None:intergenic | 30.0% | |
AGGAAAACATGGATAAACTA+GGG | - | chr6.1:489230-489249 | MS.gene82799:CDS | 30.0% | |
AGTTGCATCACATGATTAAT+TGG | + | chr6.1:489184-489203 | None:intergenic | 30.0% | |
ATCCTTGTTAATGTACTTGA+GGG | - | chr6.1:488304-488323 | MS.gene82799:intron | 30.0% | |
CAAAGCATAATCATATATGC+TGG | + | chr6.1:490509-490528 | None:intergenic | 30.0% | |
CATTAAAAACCTTTATGTCG+CGG | - | chr6.1:488616-488635 | MS.gene82799:CDS | 30.0% | |
CTGGCATCTAATATAAAACA+AGG | - | chr6.1:490325-490344 | MS.gene82799:intron | 30.0% | |
GACCTTAAAAAGATGTAACA+TGG | + | chr6.1:488686-488705 | None:intergenic | 30.0% | |
GCATGGAATTTATATACCAA+TGG | - | chr6.1:489252-489271 | MS.gene82799:CDS | 30.0% | |
TAAACAAAAGAAAGACCGTA+AGG | + | chr6.1:488771-488790 | None:intergenic | 30.0% | |
TAGAACATCGTATTCAACAA+GGG | - | chr6.1:490301-490320 | MS.gene82799:intron | 30.0% | |
TAGCCCAAAATATCACTTTA+TGG | + | chr6.1:489639-489658 | None:intergenic | 30.0% | |
TATCACTTCTAATAAGAGCA+CGG | - | chr6.1:489657-489676 | MS.gene82799:intron | 30.0% | |
TATGCTTTGCAAAATCCTTA+AGG | - | chr6.1:490520-490539 | MS.gene82799:intron | 30.0% | |
TATTTGCGCCAACTAATTAA+AGG | - | chr6.1:490826-490845 | MS.gene82799:intron | 30.0% | |
TCATTACATATAGTTGGACT+TGG | - | chr6.1:489924-489943 | MS.gene82799:intron | 30.0% | |
TCATTTAAACGAGAAGGAAA+AGG | + | chr6.1:491109-491128 | None:intergenic | 30.0% | |
TCCATTTCATTTAAACGAGA+AGG | + | chr6.1:491115-491134 | None:intergenic | 30.0% | |
TCCTTCTCGTTTAAATGAAA+TGG | - | chr6.1:491111-491130 | MS.gene82799:CDS | 30.0% | |
TGTGAACATAAAAATGGTAG+AGG | - | chr6.1:490943-490962 | MS.gene82799:intron | 30.0% | |
TGTGTATTCATGAATCATGT+TGG | + | chr6.1:490243-490262 | None:intergenic | 30.0% | |
TTAATTCAAATGATCAGTGG+TGG | - | chr6.1:487675-487694 | MS.gene82799:intron | 30.0% | |
TTAGAACATCGTATTCAACA+AGG | - | chr6.1:490300-490319 | MS.gene82799:intron | 30.0% | |
TTAGGCTTAAGTCTATATGT+TGG | + | chr6.1:490076-490095 | None:intergenic | 30.0% | |
! | AGATGATAGCTCTTTTATTC+GGG | + | chr6.1:490626-490645 | None:intergenic | 30.0% |
! | GAGATGATAGCTCTTTTATT+CGG | + | chr6.1:490627-490646 | None:intergenic | 30.0% |
! | TGGTGATGTGAACATAAAAA+TGG | - | chr6.1:490937-490956 | MS.gene82799:intron | 30.0% |
! | TTAGTAGACTTGCTTAGATT+AGG | + | chr6.1:490094-490113 | None:intergenic | 30.0% |
! | TTGAATTTTGTGTTTCAGAG+TGG | - | chr6.1:488920-488939 | MS.gene82799:intron | 30.0% |
!! | AAAATTTTGAAAGGGACATG+AGG | - | chr6.1:490415-490434 | MS.gene82799:intron | 30.0% |
!!! | TTTTTGGAACCTTTATGTCA+CGG | - | chr6.1:488660-488679 | MS.gene82799:CDS | 30.0% |
AAAGAACTTGGAATAGTTGC+AGG | - | chr6.1:489058-489077 | MS.gene82799:intron | 35.0% | |
AAGTTGACAAGATCATGAGT+AGG | + | chr6.1:487493-487512 | None:intergenic | 35.0% | |
AATGCTGAAGGTTATTATGG+AGG | - | chr6.1:487765-487784 | MS.gene82799:intron | 35.0% | |
ACAATATCAAGGATCACAAC+CGG | + | chr6.1:488536-488555 | None:intergenic | 35.0% | |
AGGTTGAATGATGAGTTCAT+TGG | + | chr6.1:487467-487486 | None:intergenic | 35.0% | |
ATCATAGGAGAGAGTGAAAT+TGG | + | chr6.1:487868-487887 | None:intergenic | 35.0% | |
ATGTATTGCGAATGAAGGAA+AGG | - | chr6.1:489813-489832 | MS.gene82799:intron | 35.0% | |
CAAAGTTAGGCATCTAATCA+AGG | - | chr6.1:489000-489019 | MS.gene82799:intron | 35.0% | |
CATAGATAAGGTATAGAGGT+GGG | + | chr6.1:489291-489310 | None:intergenic | 35.0% | |
CGATCAAATTGCCAAAACAA+CGG | + | chr6.1:488465-488484 | None:intergenic | 35.0% | |
CGCCAACTAATTAAAGGAAT+AGG | - | chr6.1:490832-490851 | MS.gene82799:intron | 35.0% | |
CTTAACGGTTGCAAAGAAAT+TGG | + | chr6.1:487434-487453 | None:intergenic | 35.0% | |
GAAAAATGACTGTGTAACCT+AGG | + | chr6.1:490683-490702 | None:intergenic | 35.0% | |
GAAATCAAGAAAGCAGTTCA+AGG | + | chr6.1:488978-488997 | None:intergenic | 35.0% | |
GATCCTTGTTAATGTACTTG+AGG | - | chr6.1:488303-488322 | MS.gene82799:intron | 35.0% | |
GATGTTGTGTTATGTTATGC+AGG | - | chr6.1:487731-487750 | MS.gene82799:intron | 35.0% | |
GTTGCATAGATAAGGTATAG+AGG | + | chr6.1:489295-489314 | None:intergenic | 35.0% | |
GTTGTGATCCTTGATATTGT+GGG | - | chr6.1:488536-488555 | MS.gene82799:intron | 35.0% | |
GTTGTTGCATATTGTACTGA+GGG | - | chr6.1:491016-491035 | MS.gene82799:CDS | 35.0% | |
TAAAAATGGTAGAGGTTGCT+AGG | - | chr6.1:490951-490970 | MS.gene82799:intron | 35.0% | |
TACCCTCAAGTACATTAACA+AGG | + | chr6.1:488309-488328 | None:intergenic | 35.0% | |
TACGATTTCCCACAATATCA+AGG | + | chr6.1:488547-488566 | None:intergenic | 35.0% | |
TAGGATTCGTTGCATAGATA+AGG | + | chr6.1:489303-489322 | None:intergenic | 35.0% | |
TATGCAAGAGTTGGATTGTT+AGG | - | chr6.1:487361-487380 | MS.gene82799:CDS | 35.0% | |
TATTCCAAGTTCTTTCTCTG+CGG | + | chr6.1:489053-489072 | None:intergenic | 35.0% | |
TGAATGATGAGTTCATTGGA+AGG | + | chr6.1:487463-487482 | None:intergenic | 35.0% | |
TGCCTATTTGTTTGGACAAA+AGG | + | chr6.1:490582-490601 | None:intergenic | 35.0% | |
TGTCCAAACAAATAGGCAAA+TGG | - | chr6.1:490584-490603 | MS.gene82799:intron | 35.0% | |
TGTGAAATCAATGCTTGAAG+TGG | - | chr6.1:489789-489808 | MS.gene82799:intron | 35.0% | |
TGTTGTTGCATATTGTACTG+AGG | - | chr6.1:491015-491034 | MS.gene82799:CDS | 35.0% | |
TTATGATCACGATCGAAAGA+AGG | - | chr6.1:487575-487594 | MS.gene82799:intron | 35.0% | |
TTATTTAGCAAGTGCCCTTA+CGG | - | chr6.1:488753-488772 | MS.gene82799:intron | 35.0% | |
TTGTTGCATATTGTACTGAG+GGG | - | chr6.1:491017-491036 | MS.gene82799:CDS | 35.0% | |
! | AGCACTATTGTAAAAGGTAC+AGG | + | chr6.1:489392-489411 | None:intergenic | 35.0% |
! | ATCACTTCTAATAAGAGCAC+GGG | - | chr6.1:489658-489677 | MS.gene82799:intron | 35.0% |
! | ATGTTGGAACTTTTACCACT+GGG | + | chr6.1:490227-490246 | None:intergenic | 35.0% |
! | CACCTTTTGTCCAAACAAAT+AGG | - | chr6.1:490577-490596 | MS.gene82799:intron | 35.0% |
! | GAGATTTACCAGATTAGTTG+TGG | + | chr6.1:490547-490566 | None:intergenic | 35.0% |
! | GCACTATTGTAAAAGGTACA+GGG | + | chr6.1:489391-489410 | None:intergenic | 35.0% |
! | GCTTTTATAGGACTTCAACA+AGG | - | chr6.1:489210-489229 | MS.gene82799:CDS | 35.0% |
! | GGCCATGTTACATCTTTTTA+AGG | - | chr6.1:488681-488700 | MS.gene82799:CDS | 35.0% |
! | GTTGATAGGATAAATGCTGA+AGG | - | chr6.1:487753-487772 | MS.gene82799:intron | 35.0% |
! | GTTTTGCTGAGGAAATAGTA+TGG | - | chr6.1:488889-488908 | MS.gene82799:intron | 35.0% |
!! | ACCGACTTTAATTTTTCCCT+AGG | - | chr6.1:490663-490682 | MS.gene82799:CDS | 35.0% |
!! | CGTAGTTTAGAGCTTTTAGT+GGG | + | chr6.1:490052-490071 | None:intergenic | 35.0% |
!! | GCAACTTTCTCTGCTTTTAT+AGG | - | chr6.1:489198-489217 | MS.gene82799:CDS | 35.0% |
!! | GTAGTTTAGAGCTTTTAGTG+GGG | + | chr6.1:490051-490070 | None:intergenic | 35.0% |
!! | GTTATGTTATGCAGGTTGAT+AGG | - | chr6.1:487739-487758 | MS.gene82799:intron | 35.0% |
!! | TAAACTTTTAAGAGCCGACT+GGG | + | chr6.1:490283-490302 | None:intergenic | 35.0% |
!! | TCGTAGTTTAGAGCTTTTAG+TGG | + | chr6.1:490053-490072 | None:intergenic | 35.0% |
!! | TTATGGTGGACTAGTTTACA+TGG | - | chr6.1:489105-489124 | MS.gene82799:intron | 35.0% |
!!! | GGTTTTAAAACACTGATCAC+CGG | + | chr6.1:488393-488412 | None:intergenic | 35.0% |
!!! | TTCTATCTGTTGTTTTGCTG+AGG | - | chr6.1:488878-488897 | MS.gene82799:intron | 35.0% |
!!! | TTGTTTTGGCAATTTGATCG+TGG | - | chr6.1:488465-488484 | MS.gene82799:intron | 35.0% |
AAAACAGCAATTACCTTCGC+AGG | + | chr6.1:489897-489916 | None:intergenic | 40.0% | |
AACATGGATAAACTAGGGCA+TGG | - | chr6.1:489235-489254 | MS.gene82799:CDS | 40.0% | |
ACAAGATCATGAGTAGGATG+AGG | + | chr6.1:487487-487506 | None:intergenic | 40.0% | |
ACCTTCGCAGGTCAAAATTT+CGG | + | chr6.1:489885-489904 | None:intergenic | 40.0% | |
ACGAGGGATGTTAGTATCAT+AGG | + | chr6.1:487883-487902 | None:intergenic | 40.0% | |
AGATGGTTATATACCTGACG+AGG | + | chr6.1:487900-487919 | None:intergenic | 40.0% | |
AGTTAGGCATCTAATCAAGG+TGG | - | chr6.1:489003-489022 | MS.gene82799:intron | 40.0% | |
ATCTCAAGCAAAGCTTCTTG+AGG | - | chr6.1:491042-491061 | MS.gene82799:CDS | 40.0% | |
ATGTTTGGAGATGATGCACT+TGG | - | chr6.1:490917-490936 | MS.gene82799:intron | 40.0% | |
ATTGCCAAAACAACGGAATC+AGG | + | chr6.1:488458-488477 | None:intergenic | 40.0% | |
ATTGGAAGGAACGAGCTTAA+CGG | + | chr6.1:487449-487468 | None:intergenic | 40.0% | |
CACAAAGCATATGCAAGAGT+TGG | - | chr6.1:487352-487371 | MS.gene82799:CDS | 40.0% | |
CTAACCTTTCCAGAATCACT+AGG | + | chr6.1:489322-489341 | None:intergenic | 40.0% | |
CTTAAGGACCACAACTAATC+TGG | - | chr6.1:490536-490555 | MS.gene82799:intron | 40.0% | |
CTTCTCTTCTCATCATCAAC+TGG | - | chr6.1:487510-487529 | MS.gene82799:CDS | 40.0% | |
GAAAGGTTAGTGTCATCGAA+TGG | - | chr6.1:489332-489351 | MS.gene82799:intron | 40.0% | |
GAGGATGAATGTCATAAAGC+AGG | - | chr6.1:491061-491080 | MS.gene82799:CDS | 40.0% | |
GATGGTTATATACCTGACGA+GGG | + | chr6.1:487899-487918 | None:intergenic | 40.0% | |
GCATAGATAAGGTATAGAGG+TGG | + | chr6.1:489292-489311 | None:intergenic | 40.0% | |
GCGTCAAAATTTACAGGTAG+CGG | - | chr6.1:490986-491005 | MS.gene82799:CDS | 40.0% | |
GGACCATTTGCCTATTTGTT+TGG | + | chr6.1:490590-490609 | None:intergenic | 40.0% | |
GGACTTCAACAAGGAAAACA+TGG | - | chr6.1:489219-489238 | MS.gene82799:CDS | 40.0% | |
GGTTGTGATCCTTGATATTG+TGG | - | chr6.1:488535-488554 | MS.gene82799:intron | 40.0% | |
GTAGTCACATAGAATCTCAG+AGG | - | chr6.1:490437-490456 | MS.gene82799:intron | 40.0% | |
TAGTTGCAGGTCTTCAAGAT+CGG | - | chr6.1:489071-489090 | MS.gene82799:intron | 40.0% | |
TGCAGGTACATAGTAAAGTG+CGG | - | chr6.1:489737-489756 | MS.gene82799:intron | 40.0% | |
TGGTTCAACTGCCTTAAACA+AGG | + | chr6.1:488497-488516 | None:intergenic | 40.0% | |
TTGCCGTAATAAACATCGCT+TGG | + | chr6.1:487391-487410 | None:intergenic | 40.0% | |
! | AGCTCTTTTATTCGGGTGTT+AGG | + | chr6.1:490619-490638 | None:intergenic | 40.0% |
! | CAGATTAGTTGTGGTCCTTA+AGG | + | chr6.1:490538-490557 | None:intergenic | 40.0% |
! | CATGTTGGAACTTTTACCAC+TGG | + | chr6.1:490228-490247 | None:intergenic | 40.0% |
! | GAATCCTAGTGATTCTGGAA+AGG | - | chr6.1:489315-489334 | MS.gene82799:intron | 40.0% |
! | TCAAAATTTACAGGTAGCGG+AGG | - | chr6.1:490989-491008 | MS.gene82799:CDS | 40.0% |
! | TCTTTTATTCGGGTGTTAGG+TGG | + | chr6.1:490616-490635 | None:intergenic | 40.0% |
! | TGTGTTTCAGAGTGGACTTT+CGG | - | chr6.1:488928-488947 | MS.gene82799:intron | 40.0% |
! | TGTTGGAACTTTTACCACTG+GGG | + | chr6.1:490226-490245 | None:intergenic | 40.0% |
! | TGTTTAAGGCAGTTGAACCA+TGG | - | chr6.1:488497-488516 | MS.gene82799:intron | 40.0% |
!! | AAACTTTTAAGAGCCGACTG+GGG | + | chr6.1:490282-490301 | None:intergenic | 40.0% |
!! | CTAAACTTTTAAGAGCCGAC+TGG | + | chr6.1:490284-490303 | None:intergenic | 40.0% |
!! | GAGGGTATGATTTTAAGTCC+TGG | - | chr6.1:488322-488341 | MS.gene82799:intron | 40.0% |
!! | GCTACCTGTAAATTTTGACG+CGG | + | chr6.1:490987-491006 | None:intergenic | 40.0% |
AACACCTACACATGTGTCGT+CGG | + | chr6.1:487613-487632 | None:intergenic | 45.0% | |
AACGGAATCAGGACGATTCA+AGG | + | chr6.1:488447-488466 | None:intergenic | 45.0% | |
AATGGTAGAGGTTGCTAGGA+AGG | - | chr6.1:490955-490974 | MS.gene82799:intron | 45.0% | |
AGTTGCAGGTCTTCAAGATC+GGG | - | chr6.1:489072-489091 | MS.gene82799:intron | 45.0% | |
ATCAAACTGGACAGTTCAGC+CGG | - | chr6.1:488371-488390 | MS.gene82799:intron | 45.0% | |
ATCTAATCAAGGTGGAGGTG+AGG | - | chr6.1:489011-489030 | MS.gene82799:intron | 45.0% | |
CAACATCAACCCAATGCCAT+TGG | + | chr6.1:487718-487737 | None:intergenic | 45.0% | |
CATCGTATTCAACAAGGGTC+TGG | - | chr6.1:490306-490325 | MS.gene82799:intron | 45.0% | |
CGAGAAGGAAAAGGTTCAAG+AGG | + | chr6.1:491100-491119 | None:intergenic | 45.0% | |
GCAACGAATCCTAGTGATTC+TGG | - | chr6.1:489310-489329 | MS.gene82799:intron | 45.0% | |
GGGAGTAGACTCAAATCCAT+TGG | + | chr6.1:489271-489290 | None:intergenic | 45.0% | |
GTAACATGGCCGTGACATAA+AGG | + | chr6.1:488672-488691 | None:intergenic | 45.0% | |
GTGCACAATCCAATGGCATT+GGG | - | chr6.1:487706-487725 | MS.gene82799:intron | 45.0% | |
GTGGCATGTATTGCGAATGA+AGG | - | chr6.1:489808-489827 | MS.gene82799:intron | 45.0% | |
GTTCATGAGAGCTGCTAGTT+TGG | + | chr6.1:489863-489882 | None:intergenic | 45.0% | |
TAATTTGGGCCGCGACATAA+AGG | + | chr6.1:488628-488647 | None:intergenic | 45.0% | |
TACATAGTAAAGTGCGGCAG+AGG | - | chr6.1:489743-489762 | MS.gene82799:intron | 45.0% | |
TAGGCATCTAATCAAGGTGG+AGG | - | chr6.1:489006-489025 | MS.gene82799:intron | 45.0% | |
TCTCTCTGTGCACAATCCAA+TGG | - | chr6.1:487699-487718 | MS.gene82799:intron | 45.0% | |
TCTGTGTGGCATCTTTCTTG+TGG | + | chr6.1:490357-490376 | None:intergenic | 45.0% | |
TGATACTAACATCCCTCGTC+AGG | - | chr6.1:487884-487903 | MS.gene82799:intron | 45.0% | |
TGGAGGAGTTCGATTGCTTA+TGG | - | chr6.1:487782-487801 | MS.gene82799:intron | 45.0% | |
TGTGCACAATCCAATGGCAT+TGG | - | chr6.1:487705-487724 | MS.gene82799:intron | 45.0% | |
TGTGCTATGAGGCTAAGAAG+AGG | - | chr6.1:489538-489557 | MS.gene82799:intron | 45.0% | |
TTGATAGGTAGTCCTTCCCT+TGG | - | chr6.1:490016-490035 | MS.gene82799:intron | 45.0% | |
TTGCTGTAGCATGTGCTATG+AGG | - | chr6.1:489527-489546 | MS.gene82799:CDS | 45.0% | |
! | CGATCGAAAGAAGGTGTATC+TGG | - | chr6.1:487584-487603 | MS.gene82799:intron | 45.0% |
! | CGTGGTTTCGTCCTTGTTTA+AGG | - | chr6.1:488483-488502 | MS.gene82799:intron | 45.0% |
! | GTGTTTCAGAGTGGACTTTC+GGG | - | chr6.1:488929-488948 | MS.gene82799:intron | 45.0% |
! | TAGTCCTTCCCTTGGTTCTT+TGG | - | chr6.1:490024-490043 | MS.gene82799:intron | 45.0% |
! | TCGTCCTGATTCCGTTGTTT+TGG | - | chr6.1:488451-488470 | MS.gene82799:intron | 45.0% |
!! | ACCGAAATTTTGACCTGCGA+AGG | - | chr6.1:489881-489900 | MS.gene82799:intron | 45.0% |
ACACTGATCACGACACAACC+AGG | + | chr6.1:488343-488362 | None:intergenic | 50.0% | |
AGCACAAGTTCTTCCCCAGT+CGG | - | chr6.1:490266-490285 | MS.gene82799:intron | 50.0% | |
AGTGGGGACCAAAGAACCAA+GGG | + | chr6.1:490035-490054 | None:intergenic | 50.0% | |
ATAGTAAAGTGCGGCAGAGG+TGG | - | chr6.1:489746-489765 | MS.gene82799:intron | 50.0% | |
ATCCGGCTAAGAACACCTTC+AGG | + | chr6.1:488810-488829 | None:intergenic | 50.0% | |
GATGTGAGTGACCTCAATCG+CGG | - | chr6.1:488579-488598 | MS.gene82799:intron | 50.0% | |
GCAGTTGAACCATGGCCTAT+AGG | - | chr6.1:488505-488524 | MS.gene82799:intron | 50.0% | |
GGAGCCGCGTCAAAATTTAC+AGG | - | chr6.1:490980-490999 | MS.gene82799:CDS | 50.0% | |
GGAGTTGAGCTCAGTATCGT+CGG | - | chr6.1:490155-490174 | MS.gene82799:intron | 50.0% | |
GTAGAGGTTGCTAGGAAGGT+TGG | - | chr6.1:490959-490978 | MS.gene82799:intron | 50.0% | |
GTATCCGACGACACATGTGT+AGG | - | chr6.1:487606-487625 | MS.gene82799:intron | 50.0% | |
TAACCAGTACAGTGCCCTGA+AGG | - | chr6.1:488792-488811 | MS.gene82799:intron | 50.0% | |
TAGTGGGGACCAAAGAACCA+AGG | + | chr6.1:490036-490055 | None:intergenic | 50.0% | |
TATTCGGGTGTTAGGTGGAG+AGG | + | chr6.1:490611-490630 | None:intergenic | 50.0% | |
TCACAACCGGTGAGACCTAT+AGG | + | chr6.1:488523-488542 | None:intergenic | 50.0% | |
TCCGGCTAAGAACACCTTCA+GGG | + | chr6.1:488809-488828 | None:intergenic | 50.0% | |
! | CATGCTGGCTGTCTAACTTC+CGG | - | chr6.1:490384-490403 | MS.gene82799:intron | 50.0% |
!! | AGTGGACTTTCGGGTTCTAG+TGG | - | chr6.1:488938-488957 | MS.gene82799:intron | 50.0% |
!! | GTGGACTTTCGGGTTCTAGT+GGG | - | chr6.1:488939-488958 | MS.gene82799:intron | 50.0% |
CAAGTTCTTTCTCTGCGGCG+AGG | + | chr6.1:489048-489067 | None:intergenic | 55.0% | |
CACACAGACAAGCTCCATGC+TGG | - | chr6.1:490369-490388 | MS.gene82799:intron | 55.0% | |
CAGCATGGAGCTTGTCTGTG+TGG | + | chr6.1:490371-490390 | None:intergenic | 55.0% | |
CCACTGGGGTTTAGCACAAG+TGG | + | chr6.1:490212-490231 | None:intergenic | 55.0% | |
CCACTTGTGCTAAACCCCAG+TGG | - | chr6.1:490209-490228 | MS.gene82799:intron | 55.0% | |
CCATGGCCTATAGGTCTCAC+CGG | - | chr6.1:488514-488533 | MS.gene82799:intron | 55.0% | |
CGGAAGTTAGACAGCCAGCA+TGG | + | chr6.1:490386-490405 | None:intergenic | 55.0% | |
CTAGAACATGGCCGCGATTG+AGG | + | chr6.1:488593-488612 | None:intergenic | 55.0% | |
CTCGCCGCAGAGAAAGAACT+TGG | - | chr6.1:489046-489065 | MS.gene82799:intron | 55.0% | |
CTTTCTCTGCGGCGAGGATA+AGG | + | chr6.1:489042-489061 | None:intergenic | 55.0% | |
GATCGGGTGGCGCAAGTTTA+TGG | - | chr6.1:489088-489107 | MS.gene82799:intron | 55.0% | |
GGGACCAAAGAACCAAGGGA+AGG | + | chr6.1:490031-490050 | None:intergenic | 55.0% | |
TCGCGGCCCAAATTAGAGTC+AGG | - | chr6.1:488633-488652 | MS.gene82799:CDS | 55.0% | |
TCTGCGGCGAGGATAAGGTT+AGG | + | chr6.1:489037-489056 | None:intergenic | 55.0% | |
TGCAGGTCTTCAAGATCGGG+TGG | - | chr6.1:489075-489094 | MS.gene82799:intron | 55.0% | |
!! | ACACCTTCAGGGCACTGTAC+TGG | + | chr6.1:488798-488817 | None:intergenic | 55.0% |
!! | GCCCTGAAGGTGTTCTTAGC+CGG | - | chr6.1:488805-488824 | MS.gene82799:intron | 55.0% |
CCGGTGAGACCTATAGGCCA+TGG | + | chr6.1:488517-488536 | None:intergenic | 60.0% | |
CGGGTGGCGCAAGTTTATGG+TGG | - | chr6.1:489091-489110 | MS.gene82799:intron | 60.0% | |
GTGCGGCAGAGGTGGCTTGA+TGG | - | chr6.1:489754-489773 | MS.gene82799:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.1 | gene | 487337 | 491156 | 487337 | ID=MS.gene82799 |
chr6.1 | mRNA | 487337 | 491156 | 487337 | ID=MS.gene82799.t1;Parent=MS.gene82799 |
chr6.1 | exon | 490962 | 491156 | 490962 | ID=MS.gene82799.t1.exon1;Parent=MS.gene82799.t1 |
chr6.1 | CDS | 490962 | 491156 | 490962 | ID=cds.MS.gene82799.t1;Parent=MS.gene82799.t1 |
chr6.1 | exon | 490588 | 490740 | 490588 | ID=MS.gene82799.t1.exon2;Parent=MS.gene82799.t1 |
chr6.1 | CDS | 490588 | 490740 | 490588 | ID=cds.MS.gene82799.t1;Parent=MS.gene82799.t1 |
chr6.1 | exon | 489367 | 489555 | 489367 | ID=MS.gene82799.t1.exon3;Parent=MS.gene82799.t1 |
chr6.1 | CDS | 489367 | 489555 | 489367 | ID=cds.MS.gene82799.t1;Parent=MS.gene82799.t1 |
chr6.1 | exon | 489157 | 489273 | 489157 | ID=MS.gene82799.t1.exon4;Parent=MS.gene82799.t1 |
chr6.1 | CDS | 489157 | 489273 | 489157 | ID=cds.MS.gene82799.t1;Parent=MS.gene82799.t1 |
chr6.1 | exon | 488591 | 488751 | 488591 | ID=MS.gene82799.t1.exon5;Parent=MS.gene82799.t1 |
chr6.1 | CDS | 488591 | 488751 | 488591 | ID=cds.MS.gene82799.t1;Parent=MS.gene82799.t1 |
chr6.1 | exon | 487337 | 487580 | 487337 | ID=MS.gene82799.t1.exon6;Parent=MS.gene82799.t1 |
chr6.1 | CDS | 487337 | 487580 | 487337 | ID=cds.MS.gene82799.t1;Parent=MS.gene82799.t1 |
Gene Sequence |
Protein sequence |