Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83677.t1 | XP_013443308.1 | 96.3 | 134 | 5 | 0 | 1 | 134 | 1 | 134 | 3.00E-65 | 257.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83677.t1 | A0A072TKA3 | 96.3 | 134 | 5 | 0 | 1 | 134 | 1 | 134 | 2.2e-65 | 257.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene061040 | MS.gene83677 | -0.802042 | 6.77E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83677.t1 | MTR_0022s0200 | 96.269 | 134 | 5 | 0 | 1 | 134 | 1 | 134 | 1.09e-94 | 269 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 31 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCGTGTTCTTCTCATTGT+TGG | 0.219593 | 6.3:-52720760 | None:intergenic |
| TTTGTCAAAGTCGCCATTAT+AGG | 0.294994 | 6.3:-52721416 | None:intergenic |
| CACAGCTATGGATTCTTCTA+TGG | 0.298350 | 6.3:+52718895 | None:intergenic |
| AAGAACGACAACCTTTGTTT+TGG | 0.298817 | 6.3:-52719015 | None:intergenic |
| TTGTCAAAGTCGCCATTATA+GGG | 0.344757 | 6.3:-52721415 | None:intergenic |
| AAAGTAAAACCACGTGGTTT+TGG | 0.352984 | 6.3:+52718930 | MS.gene83677:CDS |
| CGTAAACTACCTCAATACTA+TGG | 0.373289 | 6.3:+52718967 | MS.gene83677:CDS |
| CATGGTGAGGTTTCAAATCA+AGG | 0.391023 | 6.3:-52719105 | None:intergenic |
| GCCGTTCAATTCAAATGATC+AGG | 0.427383 | 6.3:+52720795 | MS.gene83677:CDS |
| CTTCTTTGCAACAGATTCGA+TGG | 0.428766 | 6.3:+52720735 | MS.gene83677:intron |
| AAAGGTGTAGCGCCCTATAA+TGG | 0.435667 | 6.3:+52721403 | MS.gene83677:CDS |
| ATCTTATACCTGAAGGTGTA+TGG | 0.459090 | 6.3:-52719147 | None:intergenic |
| AGAAAACACCATACACCTTC+AGG | 0.480517 | 6.3:+52719139 | MS.gene83677:CDS |
| AAGGGTTGATTCAGAGCTAT+CGG | 0.489516 | 6.3:-52719086 | None:intergenic |
| TTCTTTGCAACAGATTCGAT+GGG | 0.490944 | 6.3:+52720736 | MS.gene83677:intron |
| AAGAATTTGACGGCTGTGAT+GGG | 0.496731 | 6.3:-52719044 | None:intergenic |
| GAAGAATTTGACGGCTGTGA+TGG | 0.499319 | 6.3:-52719045 | None:intergenic |
| TATAATGGCGACTTTGACAA+AGG | 0.504926 | 6.3:+52721418 | MS.gene83677:CDS |
| ACCTGATCATTTGAATTGAA+CGG | 0.508297 | 6.3:-52720796 | None:intergenic |
| GATCGAGTCGAAGAATTTGA+CGG | 0.532184 | 6.3:-52719054 | None:intergenic |
| ATGGTGAGGTTTCAAATCAA+GGG | 0.541262 | 6.3:-52719104 | None:intergenic |
| AGGGTTGATTCAGAGCTATC+GGG | 0.541321 | 6.3:-52719085 | None:intergenic |
| CGTACAATGTTCCAAAACAA+AGG | 0.556727 | 6.3:+52719004 | MS.gene83677:CDS |
| CTGGTGCGGCTTCCATGGTG+AGG | 0.559379 | 6.3:-52719118 | None:intergenic |
| AAGAAGCTTCCATAGTATTG+AGG | 0.585611 | 6.3:-52718976 | None:intergenic |
| CAAGTAGAAAATGAAAGCAA+AGG | 0.600178 | 6.3:+52721385 | MS.gene83677:CDS |
| CTTGATTTGAAACCTCACCA+TGG | 0.689590 | 6.3:+52719106 | MS.gene83677:CDS |
| TTCGTCTGTCCAAAACCACG+TGG | 0.702042 | 6.3:-52718939 | None:intergenic |
| GTCCAACAATGAGAAGAACA+CGG | 0.724140 | 6.3:+52720758 | MS.gene83677:CDS |
| TACCAGAAAGTAAAACCACG+TGG | 0.773547 | 6.3:+52718924 | MS.gene83677:CDS |
| CAACAATGAGAAGAACACGG+AGG | 0.824433 | 6.3:+52720761 | MS.gene83677:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAATAGACATTAAAAAA+AGG | - | chr6.3:52720618-52720637 | None:intergenic | 10.0% |
| !!! | AATCTAAAATTAGATATTTT+TGG | + | chr6.3:52721258-52721277 | MS.gene83677:intron | 10.0% |
| !!! | AGATATTTATATTTTTTTAG+AGG | + | chr6.3:52719745-52719764 | MS.gene83677:intron | 10.0% |
| !!! | GATATTTATATTTTTTTAGA+GGG | + | chr6.3:52719746-52719765 | MS.gene83677:intron | 10.0% |
| !!! | TCGTATATAATTATATTTTT+TGG | + | chr6.3:52720027-52720046 | MS.gene83677:intron | 10.0% |
| !!! | TTTTTTAATGTCTATTATAT+GGG | + | chr6.3:52720618-52720637 | MS.gene83677:intron | 10.0% |
| !!! | TTTTTTTAATGTCTATTATA+TGG | + | chr6.3:52720617-52720636 | MS.gene83677:intron | 10.0% |
| !!! | TTTTTTTTTAAATAATGTAG+TGG | - | chr6.3:52720327-52720346 | None:intergenic | 10.0% |
| !! | ATTTCGTTATTAAAGTTTAT+TGG | + | chr6.3:52719842-52719861 | MS.gene83677:intron | 15.0% |
| !! | TAATAAATTCATACTCTATT+AGG | + | chr6.3:52720154-52720173 | MS.gene83677:intron | 15.0% |
| !! | TTTCGTTATTAAAGTTTATT+GGG | + | chr6.3:52719843-52719862 | MS.gene83677:intron | 15.0% |
| !!! | TCTATAGTCTTTTTTTTTTA+CGG | - | chr6.3:52721096-52721115 | None:intergenic | 15.0% |
| !!! | TTATCGATGTTTTTTTTTTA+AGG | - | chr6.3:52719273-52719292 | None:intergenic | 15.0% |
| !!! | TTTTTAATGTCTATTATATG+GGG | + | chr6.3:52720619-52720638 | MS.gene83677:intron | 15.0% |
| !! | AAAAAACTATACAATTGAGT+TGG | - | chr6.3:52720879-52720898 | None:intergenic | 20.0% |
| !! | AACATTTATTGTCTTTAGTT+AGG | + | chr6.3:52720652-52720671 | MS.gene83677:intron | 20.0% |
| !! | AATGAAGAAAAATTCAAGTA+AGG | + | chr6.3:52720524-52720543 | MS.gene83677:intron | 20.0% |
| !! | ACATTTATTGTCTTTAGTTA+GGG | + | chr6.3:52720653-52720672 | MS.gene83677:intron | 20.0% |
| !! | AGGTTAAAAAAAATTAGATG+AGG | + | chr6.3:52719437-52719456 | MS.gene83677:intron | 20.0% |
| !! | CACATTTAAGAAGAATAAAT+AGG | - | chr6.3:52720994-52721013 | None:intergenic | 20.0% |
| !! | GAAGAATAAATAGGAAATTT+AGG | - | chr6.3:52720985-52721004 | None:intergenic | 20.0% |
| !! | GACAATACATAATATATGTA+AGG | + | chr6.3:52721048-52721067 | MS.gene83677:intron | 20.0% |
| !! | GTAGTATAGTATAAGATTAT+AGG | + | chr6.3:52720491-52720510 | MS.gene83677:intron | 20.0% |
| !! | TAATGAAAAGTGAATTCATT+TGG | + | chr6.3:52720901-52720920 | MS.gene83677:intron | 20.0% |
| !! | TACATAATATATGTAAGGTT+CGG | + | chr6.3:52721053-52721072 | MS.gene83677:intron | 20.0% |
| !! | TAGCAGTTATGTTAATTTAT+GGG | + | chr6.3:52720223-52720242 | MS.gene83677:intron | 20.0% |
| !! | TATAATGGTAAACATGAAAA+AGG | + | chr6.3:52720120-52720139 | MS.gene83677:intron | 20.0% |
| !! | TATTATCACATCTACTAATA+AGG | + | chr6.3:52720408-52720427 | MS.gene83677:intron | 20.0% |
| !! | TTAGCAGTTATGTTAATTTA+TGG | + | chr6.3:52720222-52720241 | MS.gene83677:intron | 20.0% |
| !! | TTTAAGTATATTAGTTCAGT+TGG | + | chr6.3:52721021-52721040 | MS.gene83677:intron | 20.0% |
| !!! | TGGTTTGTGTATAAAATATA+AGG | + | chr6.3:52719417-52719436 | MS.gene83677:intron | 20.0% |
| !!! | TTTTAATGTCTATTATATGG+GGG | + | chr6.3:52720620-52720639 | MS.gene83677:intron | 20.0% |
| ! | AAAAACAATCTTATACCTGA+AGG | - | chr6.3:52719157-52719176 | None:intergenic | 25.0% |
| ! | AAATTCAACATGAACATGAA+GGG | + | chr6.3:52719808-52719827 | MS.gene83677:intron | 25.0% |
| ! | ACATAATATATGTAAGGTTC+GGG | + | chr6.3:52721054-52721073 | MS.gene83677:intron | 25.0% |
| ! | GATGTTGTTAAGGTATAATT+AGG | + | chr6.3:52719459-52719478 | MS.gene83677:intron | 25.0% |
| ! | GTTCAATGTTTATAGTTTGA+TGG | - | chr6.3:52721227-52721246 | None:intergenic | 25.0% |
| ! | TAACCTAATTGCTCAAAATT+AGG | + | chr6.3:52719501-52719520 | MS.gene83677:intron | 25.0% |
| ! | TGTAATGAGTTAAAAACACT+TGG | - | chr6.3:52720444-52720463 | None:intergenic | 25.0% |
| ! | TTACGAAGATATTATGTTAG+TGG | - | chr6.3:52719962-52719981 | None:intergenic | 25.0% |
| !! | TAACCTAATTTTGAGCAATT+AGG | - | chr6.3:52719507-52719526 | None:intergenic | 25.0% |
| !! | TTTTATACACAAACCACTTT+TGG | - | chr6.3:52719413-52719432 | None:intergenic | 25.0% |
| !!! | ATAGTCTTTTTTTTTTACGG+TGG | - | chr6.3:52721093-52721112 | None:intergenic | 25.0% |
| !!! | ATTTTTGGTGCTTTTCTTTT+TGG | + | chr6.3:52721273-52721292 | MS.gene83677:intron | 25.0% |
| !!! | TTTATACACAAACCACTTTT+GGG | - | chr6.3:52719412-52719431 | None:intergenic | 25.0% |
| !!! | TTTTGGTGATAGGATATTTT+TGG | + | chr6.3:52721290-52721309 | MS.gene83677:intron | 25.0% |
| AAAAATGTAAACACATGCCT+TGG | - | chr6.3:52721190-52721209 | None:intergenic | 30.0% | |
| AAAGAAGAGCCCAAAAAATA+CGG | - | chr6.3:52720722-52720741 | None:intergenic | 30.0% | |
| AATGGGTGATTTATATGTGT+AGG | + | chr6.3:52721354-52721373 | MS.gene83677:intron | 30.0% | |
| AATGTTCTATGTGGATAGTT+CGG | - | chr6.3:52720302-52720321 | None:intergenic | 30.0% | |
| ACATCGAAAGATGTTTAAGA+AGG | - | chr6.3:52720264-52720283 | None:intergenic | 30.0% | |
| ACCTGATCATTTGAATTGAA+CGG | - | chr6.3:52720799-52720818 | None:intergenic | 30.0% | |
| ATTAGATGAGGATGTTGTTA+AGG | + | chr6.3:52719449-52719468 | MS.gene83677:intron | 30.0% | |
| CAAGTAGAAAATGAAAGCAA+AGG | + | chr6.3:52721385-52721404 | MS.gene83677:CDS | 30.0% | |
| CATAATATATGTAAGGTTCG+GGG | + | chr6.3:52721055-52721074 | MS.gene83677:intron | 30.0% | |
| CTCGAAAAATAAAGCATAGT+TGG | - | chr6.3:52720679-52720698 | None:intergenic | 30.0% | |
| GAAATTCAACATGAACATGA+AGG | + | chr6.3:52719807-52719826 | MS.gene83677:intron | 30.0% | |
| GACAATGCATTATATATGCA+AGG | + | chr6.3:52719360-52719379 | MS.gene83677:intron | 30.0% | |
| TAAGGAAGCAATGATTTATG+AGG | + | chr6.3:52720542-52720561 | MS.gene83677:intron | 30.0% | |
| TGGTCATAAAAGTGACTAAT+GGG | + | chr6.3:52721337-52721356 | MS.gene83677:intron | 30.0% | |
| TGTAGAGGAGATAAATATAC+TGG | + | chr6.3:52721317-52721336 | MS.gene83677:intron | 30.0% | |
| TTATCACAAGACAAGAAGAA+AGG | - | chr6.3:52720849-52720868 | None:intergenic | 30.0% | |
| ! | AAGGCATGTGTTTACATTTT+TGG | + | chr6.3:52721189-52721208 | MS.gene83677:intron | 30.0% |
| ! | GTATATTAGTTCAGTTGGTA+AGG | + | chr6.3:52721026-52721045 | MS.gene83677:intron | 30.0% |
| ! | TGCTTTCATTTTCTACTTGT+GGG | - | chr6.3:52721384-52721403 | None:intergenic | 30.0% |
| ! | TTGCTTTCATTTTCTACTTG+TGG | - | chr6.3:52721385-52721404 | None:intergenic | 30.0% |
| !! | TTATACACAAACCACTTTTG+GGG | - | chr6.3:52719411-52719430 | None:intergenic | 30.0% |
| !!! | CTATGCTTTATTTTTCGAGA+TGG | + | chr6.3:52720680-52720699 | MS.gene83677:intron | 30.0% |
| !!! | CTTTTTTTTTTACGGTGGTT+GGG | - | chr6.3:52721088-52721107 | None:intergenic | 30.0% |
| !!! | GATATTTTTGGTGTTTGTAG+AGG | + | chr6.3:52721302-52721321 | MS.gene83677:intron | 30.0% |
| !!! | TATTGACCACCGTATTTTTT+GGG | + | chr6.3:52720710-52720729 | MS.gene83677:intron | 30.0% |
| !!! | TCTTTTTTTTTTACGGTGGT+TGG | - | chr6.3:52721089-52721108 | None:intergenic | 30.0% |
| !!! | TTATTGACCACCGTATTTTT+TGG | + | chr6.3:52720709-52720728 | MS.gene83677:intron | 30.0% |
| AAGAAGCTTCCATAGTATTG+AGG | - | chr6.3:52718979-52718998 | None:intergenic | 35.0% | |
| AAGCAATGATTTATGAGGAG+AGG | + | chr6.3:52720547-52720566 | MS.gene83677:intron | 35.0% | |
| ACACAAACCTCTAGTTAAGT+CGG | - | chr6.3:52719306-52719325 | None:intergenic | 35.0% | |
| AGCAATGATTTATGAGGAGA+GGG | + | chr6.3:52720548-52720567 | MS.gene83677:intron | 35.0% | |
| ATGGTGAGGTTTCAAATCAA+GGG | - | chr6.3:52719107-52719126 | None:intergenic | 35.0% | |
| CGTAAACTACCTCAATACTA+TGG | + | chr6.3:52718967-52718986 | MS.gene83677:CDS | 35.0% | |
| CGTACAATGTTCCAAAACAA+AGG | + | chr6.3:52719004-52719023 | MS.gene83677:CDS | 35.0% | |
| CTGGTCATAAAAGTGACTAA+TGG | + | chr6.3:52721336-52721355 | MS.gene83677:intron | 35.0% | |
| GTTGAAAGGATTATTACTGG+CGG | + | chr6.3:52719556-52719575 | MS.gene83677:intron | 35.0% | |
| TATAATGGCGACTTTGACAA+AGG | + | chr6.3:52721418-52721437 | MS.gene83677:CDS | 35.0% | |
| TGCATTATATATGCAAGGTC+CGG | + | chr6.3:52719365-52719384 | MS.gene83677:intron | 35.0% | |
| TTAGACTACCTAGAAAACCA+AGG | + | chr6.3:52721170-52721189 | MS.gene83677:intron | 35.0% | |
| TTCTTTGCAACAGATTCGAT+GGG | + | chr6.3:52720736-52720755 | MS.gene83677:intron | 35.0% | |
| TTGTCAAAGTCGCCATTATA+GGG | - | chr6.3:52721418-52721437 | None:intergenic | 35.0% | |
| TTTGTCAAAGTCGCCATTAT+AGG | - | chr6.3:52721419-52721438 | None:intergenic | 35.0% | |
| ! | AAAGTAAAACCACGTGGTTT+TGG | + | chr6.3:52718930-52718949 | MS.gene83677:CDS | 35.0% |
| ! | AGCGTTGAAAGGATTATTAC+TGG | + | chr6.3:52719553-52719572 | MS.gene83677:intron | 35.0% |
| ! | ATCTTATACCTGAAGGTGTA+TGG | - | chr6.3:52719150-52719169 | None:intergenic | 35.0% |
| ! | CATTCTATTTACGTGCTGTT+TGG | - | chr6.3:52719602-52719621 | None:intergenic | 35.0% |
| ! | GTAGTGGAAAATGTTCTATG+TGG | - | chr6.3:52720311-52720330 | None:intergenic | 35.0% |
| !! | AAGAACGACAACCTTTGTTT+TGG | - | chr6.3:52719018-52719037 | None:intergenic | 35.0% |
| !! | ATTTACGTGCTGTTTGGTTT+AGG | - | chr6.3:52719596-52719615 | None:intergenic | 35.0% |
| !! | GTGCTTTTCTTTTTGGTGAT+AGG | + | chr6.3:52721280-52721299 | MS.gene83677:intron | 35.0% |
| !! | TTGTTATGCAAAGCGTTGAA+AGG | + | chr6.3:52719542-52719561 | MS.gene83677:intron | 35.0% |
| !!! | ATGTGTTTACATTTTTGGCG+TGG | + | chr6.3:52721194-52721213 | MS.gene83677:intron | 35.0% |
| AAGAATTTGACGGCTGTGAT+GGG | - | chr6.3:52719047-52719066 | None:intergenic | 40.0% | |
| AGAAAACACCATACACCTTC+AGG | + | chr6.3:52719139-52719158 | MS.gene83677:CDS | 40.0% | |
| CAATGATTTATGAGGAGAGG+GGG | + | chr6.3:52720550-52720569 | MS.gene83677:intron | 40.0% | |
| CATGGTGAGGTTTCAAATCA+AGG | - | chr6.3:52719108-52719127 | None:intergenic | 40.0% | |
| CATTATATATGCAAGGTCCG+GGG | + | chr6.3:52719367-52719386 | MS.gene83677:intron | 40.0% | |
| CTTCTTTGCAACAGATTCGA+TGG | + | chr6.3:52720735-52720754 | MS.gene83677:intron | 40.0% | |
| GATCGAGTCGAAGAATTTGA+CGG | - | chr6.3:52719057-52719076 | None:intergenic | 40.0% | |
| GCAATGATTTATGAGGAGAG+GGG | + | chr6.3:52720549-52720568 | MS.gene83677:intron | 40.0% | |
| GCATTATATATGCAAGGTCC+GGG | + | chr6.3:52719366-52719385 | MS.gene83677:intron | 40.0% | |
| GCCGTTCAATTCAAATGATC+AGG | + | chr6.3:52720795-52720814 | MS.gene83677:CDS | 40.0% | |
| GGGTGATTTATATGTGTAGG+TGG | + | chr6.3:52721357-52721376 | MS.gene83677:intron | 40.0% | |
| GTCCAACAATGAGAAGAACA+CGG | + | chr6.3:52720758-52720777 | MS.gene83677:CDS | 40.0% | |
| TACCAGAAAGTAAAACCACG+TGG | + | chr6.3:52718924-52718943 | MS.gene83677:CDS | 40.0% | |
| ! | AAGGGTTGATTCAGAGCTAT+CGG | - | chr6.3:52719089-52719108 | None:intergenic | 40.0% |
| ! | ATCAGGTAAGCTTTGTGTGT+TGG | + | chr6.3:52720812-52720831 | MS.gene83677:intron | 40.0% |
| ! | CTTGATTTGAAACCTCACCA+TGG | + | chr6.3:52719106-52719125 | MS.gene83677:CDS | 40.0% |
| !! | AACACATGCCTTGGTTTTCT+AGG | - | chr6.3:52721181-52721200 | None:intergenic | 40.0% |
| !! | AACCACGTGGTTTTACTTTC+TGG | - | chr6.3:52718929-52718948 | None:intergenic | 40.0% |
| !! | TGAAGGTGTATGGTGTTTTC+TGG | - | chr6.3:52719140-52719159 | None:intergenic | 40.0% |
| ATCTCCTCCGACTTAACTAG+AGG | + | chr6.3:52719296-52719315 | MS.gene83677:intron | 45.0% | |
| CAAACCTCTAGTTAAGTCGG+AGG | - | chr6.3:52719303-52719322 | None:intergenic | 45.0% | |
| CAACAATGAGAAGAACACGG+AGG | + | chr6.3:52720761-52720780 | MS.gene83677:CDS | 45.0% | |
| CTCCGTGTTCTTCTCATTGT+TGG | - | chr6.3:52720763-52720782 | None:intergenic | 45.0% | |
| GAAAGGATTATTACTGGCGG+TGG | + | chr6.3:52719559-52719578 | MS.gene83677:intron | 45.0% | |
| GAAGAATTTGACGGCTGTGA+TGG | - | chr6.3:52719048-52719067 | None:intergenic | 45.0% | |
| GAAGAGCCCAAAAAATACGG+TGG | - | chr6.3:52720719-52720738 | None:intergenic | 45.0% | |
| TGAGCTTAGCTCAACTGGTA+AGG | + | chr6.3:52719338-52719357 | MS.gene83677:intron | 45.0% | |
| ! | AAAGGTGTAGCGCCCTATAA+TGG | + | chr6.3:52721403-52721422 | MS.gene83677:CDS | 45.0% |
| ! | AGGGTTGATTCAGAGCTATC+GGG | - | chr6.3:52719088-52719107 | None:intergenic | 45.0% |
| ! | TGTGGATAGTTCGGTTGATG+AGG | - | chr6.3:52720293-52720312 | None:intergenic | 45.0% |
| !! | GTGTATGGTGTTTTCTGGTG+CGG | - | chr6.3:52719135-52719154 | None:intergenic | 45.0% |
| !!! | ACAAACCACTTTTGGGGTAG+TGG | - | chr6.3:52719405-52719424 | None:intergenic | 45.0% |
| !! | TTAATAATAATTTGATATAA+TGG | + | chr6.3:52720105-52720124 | MS.gene83677:intron | 5.0% |
| !!! | TAAATTACTTATTTATTTTA+GGG | + | chr6.3:52720185-52720204 | MS.gene83677:intron | 5.0% |
| !!! | TTAAATTACTTATTTATTTT+AGG | + | chr6.3:52720184-52720203 | MS.gene83677:intron | 5.0% |
| GGATTATTACTGGCGGTGGT+TGG | + | chr6.3:52719563-52719582 | MS.gene83677:intron | 50.0% | |
| TCTCGTGAGCTTAGCTCAAC+TGG | + | chr6.3:52719333-52719352 | MS.gene83677:intron | 50.0% | |
| TTCGTCTGTCCAAAACCACG+TGG | - | chr6.3:52718942-52718961 | None:intergenic | 50.0% | |
| !! | GTTTTCTGGTGCGGCTTCCA+TGG | - | chr6.3:52719126-52719145 | None:intergenic | 55.0% |
| !!! | ACCACTTTTGGGGTAGTGGC+TGG | - | chr6.3:52719401-52719420 | None:intergenic | 55.0% |
| !!! | CACTTTTGGGGTAGTGGCTG+GGG | - | chr6.3:52719399-52719418 | None:intergenic | 55.0% |
| !!! | CCACTTTTGGGGTAGTGGCT+GGG | - | chr6.3:52719400-52719419 | None:intergenic | 55.0% |
| AGTGGCTGGGGTTTGAACCC+CGG | - | chr6.3:52719387-52719406 | None:intergenic | 60.0% | |
| CCCAGCCACTACCCCAAAAG+TGG | + | chr6.3:52719397-52719416 | MS.gene83677:intron | 60.0% | |
| CTGGTGCGGCTTCCATGGTG+AGG | - | chr6.3:52719121-52719140 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 52718902 | 52721453 | 52718902 | ID=MS.gene83677 |
| chr6.3 | mRNA | 52718902 | 52721453 | 52718902 | ID=MS.gene83677.t1;Parent=MS.gene83677 |
| chr6.3 | exon | 52718902 | 52719160 | 52718902 | ID=MS.gene83677.t1.exon1;Parent=MS.gene83677.t1 |
| chr6.3 | CDS | 52718902 | 52719160 | 52718902 | ID=cds.MS.gene83677.t1;Parent=MS.gene83677.t1 |
| chr6.3 | exon | 52720749 | 52720816 | 52720749 | ID=MS.gene83677.t1.exon2;Parent=MS.gene83677.t1 |
| chr6.3 | CDS | 52720749 | 52720816 | 52720749 | ID=cds.MS.gene83677.t1;Parent=MS.gene83677.t1 |
| chr6.3 | exon | 52721376 | 52721453 | 52721376 | ID=MS.gene83677.t1.exon3;Parent=MS.gene83677.t1 |
| chr6.3 | CDS | 52721376 | 52721453 | 52721376 | ID=cds.MS.gene83677.t1;Parent=MS.gene83677.t1 |
| Gene Sequence |
| Protein sequence |
