AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene83962


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83962.t1 MTR_6g053720 96.296 297 11 0 1 297 1 297 0.0 593
MS.gene83962.t1 MTR_6g009440 43.060 281 138 8 37 297 33 311 1.74e-72 226
MS.gene83962.t1 MTR_4g118560 44.643 280 117 7 46 297 29 298 4.25e-71 222
MS.gene83962.t1 MTR_2g020800 42.491 273 129 6 49 297 35 303 5.75e-68 214
MS.gene83962.t1 MTR_2g020800 42.435 271 130 6 49 297 35 301 2.09e-67 212
MS.gene83962.t1 MTR_3g114670 35.521 259 145 8 3 239 16 274 8.75e-38 135
MS.gene83962.t1 MTR_8g074890 37.054 224 117 8 41 240 49 272 1.75e-37 134
MS.gene83962.t1 MTR_8g074880 35.841 226 119 7 41 240 96 321 3.84e-37 135
MS.gene83962.t1 MTR_8g074810 37.168 226 121 8 34 238 46 271 3.66e-35 128
MS.gene83962.t1 MTR_5g022960 31.034 261 148 9 4 238 28 282 8.38e-34 125
MS.gene83962.t1 MTR_8g074830 33.929 224 122 8 41 238 51 274 1.47e-32 121
MS.gene83962.t1 MTR_1g116810 31.111 270 149 9 4 238 8 275 7.99e-31 117
MS.gene83962.t1 MTR_3g114590 34.673 199 116 4 57 241 67 265 3.46e-29 117
MS.gene83962.t1 MTR_3g114590 29.730 185 97 5 71 239 293 460 2.50e-14 73.6
MS.gene83962.t1 MTR_8g074870 32.751 229 117 9 31 238 6 218 7.36e-27 105
MS.gene83962.t1 MTR_3g114610 32.323 198 119 4 57 239 99 296 1.78e-25 103
MS.gene83962.t1 MTR_5g016090 25.616 203 128 5 57 238 86 286 2.05e-18 84.0
MS.gene83962.t1 MTR_4g095370 23.762 202 131 5 57 237 88 287 2.39e-16 78.2
MS.gene83962.t1 MTR_5g022960 32.520 123 69 3 57 165 81 203 1.08e-14 71.6
MS.gene83962.t1 MTR_3g051200 32.836 134 70 6 58 177 19 146 4.04e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83962.t1 AT4G25600 46.512 301 136 6 6 297 7 291 3.41e-86 260
MS.gene83962.t1 AT3G28490 44.610 269 122 6 49 297 27 288 1.29e-75 233
MS.gene83962.t1 AT3G28480 39.809 314 165 7 3 297 6 314 1.38e-74 231
MS.gene83962.t1 AT4G25600 47.561 246 108 4 57 297 1 230 2.51e-74 228
MS.gene83962.t1 AT4G25600 48.548 241 103 4 62 297 15 239 3.22e-74 228
MS.gene83962.t1 AT4G25600 48.548 241 103 4 62 297 3 227 3.68e-74 227
MS.gene83962.t1 AT3G28480 38.820 322 165 7 3 297 6 322 3.61e-73 228
MS.gene83962.t1 AT3G06300 41.948 267 129 6 53 297 37 299 2.33e-65 207
MS.gene83962.t1 AT5G18900 38.376 271 141 5 49 297 32 298 8.78e-63 200
MS.gene83962.t1 AT4G35810 36.098 205 111 4 57 241 83 287 3.55e-36 131
MS.gene83962.t1 AT4G35810 36.098 205 111 4 57 241 83 287 3.55e-36 131
MS.gene83962.t1 AT1G20270 34.314 204 114 5 57 240 79 282 2.64e-34 126
MS.gene83962.t1 AT2G17720 35.122 205 113 5 57 241 83 287 3.35e-34 126
MS.gene83962.t1 AT5G66060 29.134 254 160 4 5 238 29 282 2.14e-32 121
MS.gene83962.t1 AT2G43080 28.159 277 162 6 2 244 10 283 8.27e-29 112
MS.gene83962.t1 AT2G23096 26.562 256 155 8 3 236 22 266 2.98e-20 88.6
MS.gene83962.t1 AT4G35820 33.684 190 86 7 57 223 91 263 2.32e-19 86.3
MS.gene83962.t1 AT5G66060 27.513 189 121 3 5 179 29 215 3.20e-18 82.4
MS.gene83962.t1 AT4G33910 23.485 264 162 8 7 238 26 281 8.45e-16 76.3
MS.gene83962.t1 AT1G20270 34.146 123 67 3 57 165 79 201 1.85e-15 73.9
MS.gene83962.t1 AT1G20270 34.146 123 67 3 57 165 79 201 1.85e-15 73.9

Find 70 sgRNAs with CRISPR-Local

Find 381 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGACCACATATCGCCTTTA+AGG 0.151018 6.1:-31296359 None:intergenic
CCTTTACAGGTCATGCATTA+TGG 0.184280 6.1:+31295682 MS.gene83962:CDS
TTTCACAAACAAAACCAAAT+TGG 0.191233 6.1:+31295735 MS.gene83962:CDS
GCTCGATGCCCTGTCCTTAA+AGG 0.210672 6.1:+31296345 MS.gene83962:CDS
TCTTGTCAGGAGATGTATTT+AGG 0.219035 6.1:-31296311 None:intergenic
ACCTTGGTTGCCAAGAGATT+TGG 0.242434 6.1:-31291681 None:intergenic
GTGTGACTACCTTATTTATT+TGG 0.242556 6.1:+31293521 MS.gene83962:CDS
AGAGAACAGCAAGCCTTTAC+AGG 0.299865 6.1:+31295669 MS.gene83962:intron
CTTTACAGGTCATGCATTAT+GGG 0.305434 6.1:+31295683 MS.gene83962:CDS
GCCGTACTCACCACTGATTC+AGG 0.315848 6.1:-31295832 None:intergenic
AGAACTGCATTCCCTTTAAC+TGG 0.334718 6.1:-31296273 None:intergenic
AGAGGAAACTTCATTGGATA+TGG 0.342638 6.1:+31294097 MS.gene83962:CDS
TTCACAAACAAAACCAAATT+GGG 0.356049 6.1:+31295736 MS.gene83962:CDS
AGGTCCGGTTGATCCCAATT+TGG 0.361801 6.1:-31295749 None:intergenic
AAAGAAAGAGGAAACTTCAT+TGG 0.368859 6.1:+31294091 MS.gene83962:CDS
GGGATCAACCGGACCTTTGA+TGG 0.371144 6.1:+31295756 MS.gene83962:CDS
TGCAACATACCAAATAAATA+AGG 0.373711 6.1:-31293530 None:intergenic
TTAGCAGCAGGAAAGAATTA+AGG 0.376685 6.1:+31291581 MS.gene83962:intron
GAGGTTCTCCAACCAGTTAA+AGG 0.393818 6.1:+31296261 MS.gene83962:CDS
TTGAAGAAAGACTTTCGGTT+TGG 0.401961 6.1:+31295539 MS.gene83962:CDS
AAAACCAAATTGGGATCAAC+CGG 0.420089 6.1:+31295745 MS.gene83962:CDS
GTTGGATCTCCTGATTACTA+TGG 0.429222 6.1:+31296522 MS.gene83962:CDS
CGACAAGTACCATAGTAATC+AGG 0.442588 6.1:-31296531 None:intergenic
TAGAAGCGAGAGGGTGAAGA+AGG 0.445042 6.1:-31291457 None:intergenic
GAGGATTGAAGAAAGACTTT+CGG 0.449118 6.1:+31295534 MS.gene83962:CDS
CACGTGTTGTCCAAATCTCT+TGG 0.461511 6.1:+31291671 MS.gene83962:CDS
TCTCCCGTTGCTGCCCAAGC+TGG 0.465114 6.1:-31296474 None:intergenic
CTGCATTCCCTTTAACTGGT+TGG 0.472708 6.1:-31296269 None:intergenic
AAGAAGGTGTTAGAAGCGAG+AGG 0.473143 6.1:-31291467 None:intergenic
AGATGATAGTTGTCCAGCTT+GGG 0.474954 6.1:+31296461 MS.gene83962:CDS
CACTGTTGCCATCAAAGGTC+CGG 0.475147 6.1:-31295764 None:intergenic
TGTCCAGCTTGGGCAGCAAC+GGG 0.476542 6.1:+31296471 MS.gene83962:CDS
GCGTGTAAGCTACTCTTGTC+AGG 0.476850 6.1:-31296324 None:intergenic
AGGTTCTCCAACCAGTTAAA+GGG 0.477047 6.1:+31296262 MS.gene83962:CDS
CCATAATGCATGACCTGTAA+AGG 0.487176 6.1:-31295682 None:intergenic
AAGATGATAGTTGTCCAGCT+TGG 0.488359 6.1:+31296460 MS.gene83962:CDS
CGGAACCCTGTCTACATGGT+TGG 0.491604 6.1:+31296504 MS.gene83962:CDS
ATTTGACCAGCTGCTACTCT+TGG 0.492285 6.1:-31296223 None:intergenic
GGAGATCCAACCATGTAGAC+AGG 0.498626 6.1:-31296510 None:intergenic
AGAGGGTGAAGAAGGTGATG+AGG 0.510106 6.1:-31291449 None:intergenic
TAACACCTTCTTTCTCCGAC+AGG 0.514033 6.1:+31291478 MS.gene83962:CDS
TTGTCCAGCTTGGGCAGCAA+CGG 0.515020 6.1:+31296470 MS.gene83962:CDS
CACATATCGCCTTTAAGGAC+AGG 0.515314 6.1:-31296354 None:intergenic
AATTACCTGTCGGAGAAAGA+AGG 0.515809 6.1:-31291483 None:intergenic
CTGATTACTATGGTACTTGT+CGG 0.527249 6.1:+31296532 MS.gene83962:CDS
TCAACGGAACCCTGTCTACA+TGG 0.530423 6.1:+31296500 MS.gene83962:CDS
TGGTGGCTATTCAAAGAAAG+AGG 0.553698 6.1:+31294079 MS.gene83962:CDS
AGAATCACTGTTGCCATCAA+AGG 0.553753 6.1:-31295769 None:intergenic
GAAGAAGGTGATGAGGAGAA+AGG 0.556142 6.1:-31291442 None:intergenic
AGAAGGTGTTAGAAGCGAGA+GGG 0.558813 6.1:-31291466 None:intergenic
CACCACTGATTCAGGAAAGA+GGG 0.567187 6.1:-31295824 None:intergenic
ATCTCTCGAATGCTACTCAA+GGG 0.570249 6.1:+31295794 MS.gene83962:CDS
TCACCACTGATTCAGGAAAG+AGG 0.571225 6.1:-31295825 None:intergenic
CATCTCTCGAATGCTACTCA+AGG 0.573935 6.1:+31295793 MS.gene83962:CDS
AACCCTCTTTCCTGAATCAG+TGG 0.574378 6.1:+31295822 MS.gene83962:CDS
CACAGACCAAGAGTAGCAGC+TGG 0.591686 6.1:+31296217 MS.gene83962:intron
CTGTCCTTAAAGGCGATATG+TGG 0.609635 6.1:+31296355 MS.gene83962:CDS
TCCAAATCTCTTGGCAACCA+AGG 0.611001 6.1:+31291680 MS.gene83962:CDS
TATACAAGATCGATCAGTGG+AGG 0.618199 6.1:+31296396 MS.gene83962:CDS
GAGATTTGGACAACACGTGA+AGG 0.623698 6.1:-31291667 None:intergenic
AGGGAAAGTCTCAACTACGC+TGG 0.624281 6.1:+31296416 MS.gene83962:CDS
TTTAGGATGATATTGTCAAG+AGG 0.632824 6.1:+31295515 MS.gene83962:intron
ATACAAGATCGATCAGTGGA+GGG 0.641541 6.1:+31296397 MS.gene83962:CDS
CAGCAACGGGAGAATGTCAA+CGG 0.647505 6.1:+31296484 MS.gene83962:CDS
TTCTATACAAGATCGATCAG+TGG 0.652183 6.1:+31296393 MS.gene83962:CDS
TCTCTCGAATGCTACTCAAG+GGG 0.663851 6.1:+31295795 MS.gene83962:CDS
GAGATCCAACCATGTAGACA+GGG 0.668526 6.1:-31296509 None:intergenic
ACATATCGCCTTTAAGGACA+GGG 0.680203 6.1:-31296353 None:intergenic
CTCTCGAATGCTACTCAAGG+GGG 0.692797 6.1:+31295796 MS.gene83962:CDS
AAATTGTAGAAATAACAGTG+AGG 0.789611 6.1:+31296242 MS.gene83962:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATATATATAATAATAA+AGG - chr6.1:31291740-31291759 None:intergenic 0.0%
!! AATATTATTATTATTATGAG+CGG + chr6.1:31291851-31291870 MS.gene83962:intron 10.0%
!! ATATAATAATAAAGGAATAA+AGG - chr6.1:31291732-31291751 None:intergenic 10.0%
!! TATAATAATAAAGGAATAAA+GGG - chr6.1:31291731-31291750 None:intergenic 10.0%
!! TTAATTATATTATAAGTAGA+GGG + chr6.1:31293831-31293850 MS.gene83962:intron 10.0%
!! TTTAATTATATTATAAGTAG+AGG + chr6.1:31293830-31293849 MS.gene83962:intron 10.0%
!!! TTTTAAATTACAGAAAATTA+TGG - chr6.1:31295312-31295331 None:intergenic 10.0%
!! AAACGGAAAAAAAAAATTAA+GGG - chr6.1:31295946-31295965 None:intergenic 15.0%
!! ATAATAATTAGAGTGAAATT+AGG - chr6.1:31291529-31291548 None:intergenic 15.0%
!! ATCAATGTAAAACTAATTTA+TGG + chr6.1:31293766-31293785 MS.gene83962:intron 15.0%
!! TAAAAATAACAGTGTAATTT+AGG + chr6.1:31296144-31296163 MS.gene83962:intron 15.0%
!! TAATAATTAGAGTGAAATTA+GGG - chr6.1:31291528-31291547 None:intergenic 15.0%
!! TAATTATATTATAAGTAGAG+GGG + chr6.1:31293832-31293851 MS.gene83962:intron 15.0%
!! TATGTTCATTAAAGATATAT+CGG - chr6.1:31293617-31293636 None:intergenic 15.0%
!! TTATTGTCGAAAATTAATAT+AGG + chr6.1:31294996-31295015 MS.gene83962:intron 15.0%
!!! AAATTTGGAATTAACTAATT+AGG - chr6.1:31295095-31295114 None:intergenic 15.0%
!!! ATTTTTCTATTAGTTTGTTA+TGG + chr6.1:31291920-31291939 MS.gene83962:intron 15.0%
!!! GTAATTTAAAATATCATAAC+CGG + chr6.1:31295321-31295340 MS.gene83962:intron 15.0%
!!! TAAATTACACTGTTATTTTT+AGG - chr6.1:31296145-31296164 None:intergenic 15.0%
!!! TTTTAAATTTGAGATAATAG+TGG + chr6.1:31291990-31292009 MS.gene83962:intron 15.0%
!!! TTTTTCTATTAGTTTGTTAT+GGG + chr6.1:31291921-31291940 MS.gene83962:intron 15.0%
!! AAAGTAACATTTATAACTGA+AGG - chr6.1:31295979-31295998 None:intergenic 20.0%
!! AAATATACAGTTACAAATGT+GGG + chr6.1:31293710-31293729 MS.gene83962:intron 20.0%
!! AACGGAAAAAAAAAATTAAG+GGG - chr6.1:31295945-31295964 None:intergenic 20.0%
!! AAGTAACATTTATAACTGAA+GGG - chr6.1:31295978-31295997 None:intergenic 20.0%
!! AATAAATGTTCATTTCCATT+TGG + chr6.1:31291956-31291975 MS.gene83962:intron 20.0%
!! AGTTGTTTATTAGTAGAATT+CGG + chr6.1:31292732-31292751 MS.gene83962:intron 20.0%
!! ATAAGTATAGAAAAAAGTTC+AGG - chr6.1:31294130-31294149 None:intergenic 20.0%
!! ATTTACCATTTACTTAATGT+AGG + chr6.1:31294352-31294371 MS.gene83962:intron 20.0%
!! CATAATCAAAAAGAAAACAA+AGG - chr6.1:31296185-31296204 None:intergenic 20.0%
!! GAAACGGAAAAAAAAAATTA+AGG - chr6.1:31295947-31295966 None:intergenic 20.0%
!! GTGTAATGATTGTAATTTAA+GGG + chr6.1:31296082-31296101 MS.gene83962:intron 20.0%
!! TAAATATACAGTTACAAATG+TGG + chr6.1:31293709-31293728 MS.gene83962:intron 20.0%
!! TCATTAGTGTTATAAGTTAT+AGG + chr6.1:31295446-31295465 MS.gene83962:intron 20.0%
!! TGTGTAATGATTGTAATTTA+AGG + chr6.1:31296081-31296100 MS.gene83962:intron 20.0%
!! TTGAAAATTTGCATATGTAA+TGG - chr6.1:31292635-31292654 None:intergenic 20.0%
!! TTGAAAGTCTTAAATAGAAA+TGG - chr6.1:31293874-31293893 None:intergenic 20.0%
!!! AAAACTGTTTTCATTATTTC+TGG - chr6.1:31294570-31294589 None:intergenic 20.0%
!!! AATAATATTGAGCTATGTTT+TGG - chr6.1:31291840-31291859 None:intergenic 20.0%
!!! AATGATATGGTATAGATTTT+TGG + chr6.1:31292100-31292119 MS.gene83962:intron 20.0%
!!! GTATATTTAAAATGACGATA+TGG - chr6.1:31293698-31293717 None:intergenic 20.0%
!!! TATACTTATTTTGATGAACT+AGG + chr6.1:31294141-31294160 MS.gene83962:intron 20.0%
!!! TCTTCTACATTTTCAAAATT+TGG - chr6.1:31295110-31295129 None:intergenic 20.0%
!!! TTTGACATTTTCATTGTTTA+TGG + chr6.1:31294590-31294609 MS.gene83962:intron 20.0%
!!! TTTTTTTTAAACTCGGTATT+CGG + chr6.1:31291757-31291776 MS.gene83962:intron 20.0%
! AAACAATGTGGTTATAAGTT+GGG - chr6.1:31293050-31293069 None:intergenic 25.0%
! AAATTGTAGAAATAACAGTG+AGG + chr6.1:31296242-31296261 MS.gene83962:CDS 25.0%
! AACAAGAACATGTAACATAA+TGG - chr6.1:31294887-31294906 None:intergenic 25.0%
! AATATACAGTTACAAATGTG+GGG + chr6.1:31293711-31293730 MS.gene83962:intron 25.0%
! AGCAGAAAGATATTGAAAAA+CGG + chr6.1:31295203-31295222 MS.gene83962:intron 25.0%
! AGTAGAATTCGGTTATAATT+TGG + chr6.1:31292743-31292762 MS.gene83962:intron 25.0%
! ATTACAATCATTACACACTT+TGG - chr6.1:31296078-31296097 None:intergenic 25.0%
! ATTAGGGTTTAGTACTATAT+TGG + chr6.1:31292172-31292191 MS.gene83962:intron 25.0%
! CAAAATGAAACGTAAAAACT+TGG + chr6.1:31296107-31296126 MS.gene83962:intron 25.0%
! CAACTAAAATGTAGTTAGTT+AGG + chr6.1:31292036-31292055 MS.gene83962:intron 25.0%
! CTTCAAGAATAACTTAATGT+AGG + chr6.1:31294390-31294409 MS.gene83962:intron 25.0%
! GAAACCTAAAAATGACTTAA+GGG - chr6.1:31295915-31295934 None:intergenic 25.0%
! GAGTACAATATCAGATATTA+GGG + chr6.1:31292156-31292175 MS.gene83962:intron 25.0%
! GCGAATGTGTTTATAAATTA+GGG - chr6.1:31292817-31292836 None:intergenic 25.0%
! GTAGAATTCGGTTATAATTT+GGG + chr6.1:31292744-31292763 MS.gene83962:intron 25.0%
! TAACACTAATGAATTGTTCA+TGG - chr6.1:31295438-31295457 None:intergenic 25.0%
! TAATGGTTTATGCAATGATA+TGG + chr6.1:31292087-31292106 MS.gene83962:intron 25.0%
! TATAAATTACCAATGATTCG+AGG + chr6.1:31292684-31292703 MS.gene83962:intron 25.0%
! TCAGATATAAACCATTCTTA+GGG + chr6.1:31294419-31294438 MS.gene83962:intron 25.0%
! TCTGACATTTGATGAAAATA+TGG - chr6.1:31292843-31292862 None:intergenic 25.0%
! TGAAACCTAAAAATGACTTA+AGG - chr6.1:31295916-31295935 None:intergenic 25.0%
! TGAGTACAATATCAGATATT+AGG + chr6.1:31292155-31292174 MS.gene83962:intron 25.0%
! TGCAACATACCAAATAAATA+AGG - chr6.1:31293533-31293552 None:intergenic 25.0%
! TGCGAATGTGTTTATAAATT+AGG - chr6.1:31292818-31292837 None:intergenic 25.0%
! TGTGTAATTTAATTACCTGT+CGG - chr6.1:31291496-31291515 None:intergenic 25.0%
! TTAATATTTGTATTAGCAGC+AGG + chr6.1:31291569-31291588 MS.gene83962:intron 25.0%
! TTATAGGACAGAAATATTGA+AGG - chr6.1:31294917-31294936 None:intergenic 25.0%
! TTCACAAACAAAACCAAATT+GGG + chr6.1:31295736-31295755 MS.gene83962:CDS 25.0%
! TTCATTAAAGATATATCGGA+TGG - chr6.1:31293613-31293632 None:intergenic 25.0%
! TTGATCAAATAGATACCTTT+AGG - chr6.1:31295574-31295593 None:intergenic 25.0%
! TTGTAGACATTATTATGATG+AGG + chr6.1:31295476-31295495 MS.gene83962:intron 25.0%
! TTTAGGCTAAATTAAACCTT+TGG + chr6.1:31295888-31295907 MS.gene83962:intron 25.0%
! TTTCACAAACAAAACCAAAT+TGG + chr6.1:31295735-31295754 MS.gene83962:CDS 25.0%
! TTTGGAAGAACTTATGAATA+AGG - chr6.1:31293236-31293255 None:intergenic 25.0%
! TTTGGATTGTCTTGATATAA+TGG + chr6.1:31292070-31292089 MS.gene83962:intron 25.0%
!! ATTAGTTTAATGGACATTCA+AGG + chr6.1:31293651-31293670 MS.gene83962:intron 25.0%
!! CAAGTTTTTACGTTTCATTT+TGG - chr6.1:31296109-31296128 None:intergenic 25.0%
!! GATTCTGGATAAACATTTTT+GGG + chr6.1:31292944-31292963 MS.gene83962:intron 25.0%
!! GTCAGTGTAAATTAGTTTAA+TGG + chr6.1:31293641-31293660 MS.gene83962:intron 25.0%
!! GTTTGCATTGTGAAAATTTT+CGG + chr6.1:31294210-31294229 MS.gene83962:intron 25.0%
!! TAATTTAGGATATCTTGTTC+TGG + chr6.1:31296158-31296177 MS.gene83962:intron 25.0%
!! TATGTTTTCACAAAGTAAAC+AGG + chr6.1:31294703-31294722 MS.gene83962:intron 25.0%
!! TATTAGCTTATTCTTTGTGT+AGG + chr6.1:31294279-31294298 MS.gene83962:intron 25.0%
!! TGATTCTGGATAAACATTTT+TGG + chr6.1:31292943-31292962 MS.gene83962:intron 25.0%
!! TTAGTTTAATGGACATTCAA+GGG + chr6.1:31293652-31293671 MS.gene83962:intron 25.0%
!! TTGCGTACTATTTATCTTTT+AGG + chr6.1:31295871-31295890 MS.gene83962:intron 25.0%
!!! CTAACTAACTACATTTTAGT+TGG - chr6.1:31292038-31292057 None:intergenic 25.0%
!!! GTTATTTTTAGGTTTCACTT+TGG - chr6.1:31296134-31296153 None:intergenic 25.0%
!!! TGAGTTTTTTTTGCAATTCT+TGG + chr6.1:31293918-31293937 MS.gene83962:intron 25.0%
AAAACTAAATCTACGCCAAA+TGG - chr6.1:31291974-31291993 None:intergenic 30.0%
AAAGAAAGAGGAAACTTCAT+TGG + chr6.1:31294091-31294110 MS.gene83962:CDS 30.0%
AACAAGTAATTGCAACATGT+TGG - chr6.1:31295395-31295414 None:intergenic 30.0%
AATGTTTATCCAGAATCAGT+TGG - chr6.1:31292941-31292960 None:intergenic 30.0%
AATTAGAGTGAAATTAGGGA+AGG - chr6.1:31291524-31291543 None:intergenic 30.0%
ACAACGTTTCACAAAGTAAA+CGG - chr6.1:31294446-31294465 None:intergenic 30.0%
ACATTTACTTGCAAAACACT+TGG - chr6.1:31294965-31294984 None:intergenic 30.0%
ACTTCAAGAAAACTTACTGT+AGG + chr6.1:31294304-31294323 MS.gene83962:intron 30.0%
AGAATCAACTAGCTGTAAAA+AGG - chr6.1:31293411-31293430 None:intergenic 30.0%
AGATCTAGGTATTAGAAACT+TGG + chr6.1:31292970-31292989 MS.gene83962:intron 30.0%
ATATGGCATGGAAAAATGAA+GGG - chr6.1:31293681-31293700 None:intergenic 30.0%
ATGTTTATCCAGAATCAGTT+GGG - chr6.1:31292940-31292959 None:intergenic 30.0%
ATTAGAGTGAAATTAGGGAA+GGG - chr6.1:31291523-31291542 None:intergenic 30.0%
ATTATGGGCTTGAAAAAGAT+AGG + chr6.1:31295698-31295717 MS.gene83962:CDS 30.0%
ATTTACATAGCTCTCAATGA+TGG - chr6.1:31293194-31293213 None:intergenic 30.0%
CAAACAATGTGGTTATAAGT+TGG - chr6.1:31293051-31293070 None:intergenic 30.0%
CAACTTATAACCACATTGTT+TGG + chr6.1:31293049-31293068 MS.gene83962:intron 30.0%
CAAGAAAAATCATCTGGAAA+TGG + chr6.1:31294059-31294078 MS.gene83962:CDS 30.0%
CAGAAAATTATGGCCAAATA+TGG - chr6.1:31295302-31295321 None:intergenic 30.0%
CTAAAATGTAGTTAGTTAGG+TGG + chr6.1:31292039-31292058 MS.gene83962:intron 30.0%
CTATGCAACAACTACTATTA+AGG - chr6.1:31293329-31293348 None:intergenic 30.0%
GAATCAACTAGCTGTAAAAA+GGG - chr6.1:31293410-31293429 None:intergenic 30.0%
GATCTAGGTATTAGAAACTT+GGG + chr6.1:31292971-31292990 MS.gene83962:intron 30.0%
GATTGAACCATCAAATTAGT+CGG - chr6.1:31291787-31291806 None:intergenic 30.0%
GCAACTACTCATATATTTGT+AGG + chr6.1:31295143-31295162 MS.gene83962:intron 30.0%
GGCAAAATGATGAATCTATA+AGG + chr6.1:31292462-31292481 MS.gene83962:intron 30.0%
GGTTGATTGTTCATATAAGT+AGG + chr6.1:31292483-31292502 MS.gene83962:intron 30.0%
GTCAGATATAAACCATTCTT+AGG + chr6.1:31294418-31294437 MS.gene83962:intron 30.0%
GTCCAACATTGGATAAAATA+TGG - chr6.1:31293075-31293094 None:intergenic 30.0%
TAAAATATGGCCAAACAATG+TGG - chr6.1:31293062-31293081 None:intergenic 30.0%
TAATGAATTGTTCATGGTCA+AGG - chr6.1:31295432-31295451 None:intergenic 30.0%
TAATTAGTGTCCAAAGTTCA+GGG - chr6.1:31295072-31295091 None:intergenic 30.0%
TATGGTTGATTGAGTGTTAT+AGG - chr6.1:31294933-31294952 None:intergenic 30.0%
TATTATTATGAGCGGAAAGA+TGG + chr6.1:31291859-31291878 MS.gene83962:intron 30.0%
TCATAAGTTCTTCCAAATTG+TGG + chr6.1:31293239-31293258 MS.gene83962:intron 30.0%
TGATGAAGTGAATGATGTAA+AGG - chr6.1:31293804-31293823 None:intergenic 30.0%
TTGACTCTGACTTACAAAAT+TGG + chr6.1:31292773-31292792 MS.gene83962:intron 30.0%
! AAATTGCCAGGCTTTAATAT+GGG + chr6.1:31295034-31295053 MS.gene83962:intron 30.0%
! AATAGACAAGATTTTCCCAT+CGG - chr6.1:31294263-31294282 None:intergenic 30.0%
! GTGTGACTACCTTATTTATT+TGG + chr6.1:31293521-31293540 MS.gene83962:CDS 30.0%
! TATAGTGATAATGATGTCCA+GGG - chr6.1:31295371-31295390 None:intergenic 30.0%
! TTAAGTTGTTTATCCAAGCA+TGG - chr6.1:31292710-31292729 None:intergenic 30.0%
! TTTAAAATGACGATATGGCA+TGG - chr6.1:31293693-31293712 None:intergenic 30.0%
! TTTAGGATGATATTGTCAAG+AGG + chr6.1:31295515-31295534 MS.gene83962:intron 30.0%
! TTTGAAGTGAATCATTGTGA+TGG + chr6.1:31294511-31294530 MS.gene83962:intron 30.0%
! TTTGTACAAAGGCTTTTTGT+CGG + chr6.1:31293491-31293510 MS.gene83962:CDS 30.0%
!! TTTTACTTGTTAACAAGCAC+AGG - chr6.1:31294651-31294670 None:intergenic 30.0%
!!! AGCTATGTTTTGGCTTTAAA+TGG - chr6.1:31291830-31291849 None:intergenic 30.0%
!!! GCTTTTAGAATTTGTATCAC+AGG - chr6.1:31295613-31295632 None:intergenic 30.0%
!!! TTACTCTATTGTTTTTGCCA+AGG + chr6.1:31294034-31294053 MS.gene83962:intron 30.0%
AAAACCAAATTGGGATCAAC+CGG + chr6.1:31295745-31295764 MS.gene83962:CDS 35.0%
AAAATGACTTAAGGGACCAA+AGG - chr6.1:31295907-31295926 None:intergenic 35.0%
AAATGTAGTTAGTTAGGTGG+TGG + chr6.1:31292042-31292061 MS.gene83962:intron 35.0%
AACACTTGGCTTACAAGTTA+TGG - chr6.1:31294951-31294970 None:intergenic 35.0%
AAGAACAAGCTAAACCTATG+AGG - chr6.1:31294742-31294761 None:intergenic 35.0%
AAGGCACAAGAAAAATCATC+TGG + chr6.1:31294053-31294072 MS.gene83962:intron 35.0%
ACATCATTCACTTCATCACT+TGG + chr6.1:31293806-31293825 MS.gene83962:intron 35.0%
ACTTGTAAAAGCAAATTGCC+AGG + chr6.1:31295022-31295041 MS.gene83962:intron 35.0%
AGAGGAAACTTCATTGGATA+TGG + chr6.1:31294097-31294116 MS.gene83962:CDS 35.0%
AGGTATTAGAAACTTGGGTT+GGG + chr6.1:31292976-31292995 MS.gene83962:intron 35.0%
AGTGGCCTACATTAAGTAAA+TGG - chr6.1:31294360-31294379 None:intergenic 35.0%
AGTTCGTCAAATGTTTCCTA+TGG - chr6.1:31296030-31296049 None:intergenic 35.0%
ATCAATAACTATTGACCGCT+TGG - chr6.1:31294856-31294875 None:intergenic 35.0%
CACAGCAAGTACATGTAAAA+TGG - chr6.1:31292137-31292156 None:intergenic 35.0%
CATTCAGAAATCTGTCACAT+TGG - chr6.1:31294330-31294349 None:intergenic 35.0%
CTGAAGGGACTAAAATGAAA+CGG - chr6.1:31295963-31295982 None:intergenic 35.0%
CTGATTACTATGGTACTTGT+CGG + chr6.1:31296532-31296551 MS.gene83962:CDS 35.0%
CTTTACAGGTCATGCATTAT+GGG + chr6.1:31295683-31295702 MS.gene83962:CDS 35.0%
GAAAAATCATCTGGAAATGG+TGG + chr6.1:31294062-31294081 MS.gene83962:CDS 35.0%
GAACTAGGCACTAGTAAATT+AGG + chr6.1:31294156-31294175 MS.gene83962:intron 35.0%
GAATGGTTTATATCTGACAG+TGG - chr6.1:31294416-31294435 None:intergenic 35.0%
GACCGTTAATATATTCCCAA+GGG - chr6.1:31292411-31292430 None:intergenic 35.0%
GAGGATTGAAGAAAGACTTT+CGG + chr6.1:31295534-31295553 MS.gene83962:CDS 35.0%
GATATGGCATGGAAAAATGA+AGG - chr6.1:31293682-31293701 None:intergenic 35.0%
GTAATTAGTGTCCAAAGTTC+AGG - chr6.1:31295073-31295092 None:intergenic 35.0%
TAGGTATTAGAAACTTGGGT+TGG + chr6.1:31292975-31292994 MS.gene83962:intron 35.0%
TATAAGGCTGAGTAAGAGTT+AGG - chr6.1:31293002-31293021 None:intergenic 35.0%
TCTTGAAGTTATTCTGACAG+TGG - chr6.1:31294378-31294397 None:intergenic 35.0%
TCTTGTCAGGAGATGTATTT+AGG - chr6.1:31296314-31296333 None:intergenic 35.0%
TGGTATTTATAGCCCTTTGT+GGG + chr6.1:31292221-31292240 MS.gene83962:intron 35.0%
TTAGCAGCAGGAAAGAATTA+AGG + chr6.1:31291581-31291600 MS.gene83962:intron 35.0%
TTCTATACAAGATCGATCAG+TGG + chr6.1:31296393-31296412 MS.gene83962:CDS 35.0%
TTGAAGAAAGACTTTCGGTT+TGG + chr6.1:31295539-31295558 MS.gene83962:CDS 35.0%
TTTGTATCACAGGCAAATAC+TGG - chr6.1:31295603-31295622 None:intergenic 35.0%
! AGATGATTTTTCTTGTGCCT+TGG - chr6.1:31294054-31294073 None:intergenic 35.0%
! ATAGTGATAATGATGTCCAG+GGG - chr6.1:31295370-31295389 None:intergenic 35.0%
! CAAATTGCCAGGCTTTAATA+TGG + chr6.1:31295033-31295052 MS.gene83962:intron 35.0%
! CATTTTTCATTCGAGTCCAT+AGG + chr6.1:31296011-31296030 MS.gene83962:intron 35.0%
! CTATAGTGATAATGATGTCC+AGG - chr6.1:31295372-31295391 None:intergenic 35.0%
! GGCCATATTTTATCCAATGT+TGG + chr6.1:31293070-31293089 MS.gene83962:intron 35.0%
! GTTCTACACTGTTCTGTTTT+AGG + chr6.1:31295498-31295517 MS.gene83962:intron 35.0%
! GTTTGGACTTTTCTTCCTAA+AGG + chr6.1:31295556-31295575 MS.gene83962:CDS 35.0%
! TGTAGGGTCTTTTTGTACAA+AGG + chr6.1:31293480-31293499 MS.gene83962:intron 35.0%
! TGTTCATTGTTTTCACCGAT+GGG + chr6.1:31294245-31294264 MS.gene83962:intron 35.0%
! TTGTTCATTGTTTTCACCGA+TGG + chr6.1:31294244-31294263 MS.gene83962:intron 35.0%
!! ACATGTACTGATTGTGTCTT+AGG + chr6.1:31294792-31294811 MS.gene83962:intron 35.0%
!! ACCTCAAAGTCGGTTTTATA+AGG - chr6.1:31293018-31293037 None:intergenic 35.0%
!! AGGTTGACTTGGTTCTTAAT+TGG + chr6.1:31294812-31294831 MS.gene83962:intron 35.0%
!! TTCTTGTTCCTTTTGCTGTA+GGG + chr6.1:31293464-31293483 MS.gene83962:intron 35.0%
!! TTTCTTGTTCCTTTTGCTGT+AGG + chr6.1:31293463-31293482 MS.gene83962:intron 35.0%
!!! ACATTTTTGGGTTGAGATCT+AGG + chr6.1:31292956-31292975 MS.gene83962:intron 35.0%
!!! TGGTCCCTTAAGTCATTTTT+AGG + chr6.1:31295908-31295927 MS.gene83962:intron 35.0%
AAGATGATAGTTGTCCAGCT+TGG + chr6.1:31296460-31296479 MS.gene83962:CDS 40.0%
AAGTAAACGGACCCTAAGAA+TGG - chr6.1:31294433-31294452 None:intergenic 40.0%
AAGTGCTAAGAGTCCAACAT+TGG - chr6.1:31293086-31293105 None:intergenic 40.0%
AATTACCTGTCGGAGAAAGA+AGG - chr6.1:31291486-31291505 None:intergenic 40.0%
AGAACTGCATTCCCTTTAAC+TGG - chr6.1:31296276-31296295 None:intergenic 40.0%
AGAATCACTGTTGCCATCAA+AGG - chr6.1:31295772-31295791 None:intergenic 40.0%
AGATGATAGTTGTCCAGCTT+GGG + chr6.1:31296461-31296480 MS.gene83962:CDS 40.0%
AGGGCTATAAATACCACTCT+TGG - chr6.1:31292217-31292236 None:intergenic 40.0%
AGGTTCTCCAACCAGTTAAA+GGG + chr6.1:31296262-31296281 MS.gene83962:CDS 40.0%
ATACAAGATCGATCAGTGGA+GGG + chr6.1:31296397-31296416 MS.gene83962:CDS 40.0%
ATCTCTCGAATGCTACTCAA+GGG + chr6.1:31295794-31295813 MS.gene83962:CDS 40.0%
ATGGGCTTGAAAAAGATAGG+CGG + chr6.1:31295701-31295720 MS.gene83962:CDS 40.0%
CAAAAAGACCCTACAGCAAA+AGG - chr6.1:31293475-31293494 None:intergenic 40.0%
CACTCTTGGAATCATTCTCA+AGG - chr6.1:31292203-31292222 None:intergenic 40.0%
CCATAATGCATGACCTGTAA+AGG - chr6.1:31295685-31295704 None:intergenic 40.0%
CCTTTACAGGTCATGCATTA+TGG + chr6.1:31295682-31295701 MS.gene83962:CDS 40.0%
CGACAAGTACCATAGTAATC+AGG - chr6.1:31296534-31296553 None:intergenic 40.0%
CTTGAGAATGATTCCAAGAG+TGG + chr6.1:31292201-31292220 MS.gene83962:intron 40.0%
GAAAACCTTCACCTCAAAGT+CGG - chr6.1:31293028-31293047 None:intergenic 40.0%
GGACCGTTAATATATTCCCA+AGG - chr6.1:31292412-31292431 None:intergenic 40.0%
GGCCCTTGGGAATATATTAA+CGG + chr6.1:31292406-31292425 MS.gene83962:intron 40.0%
GTGGTATTTATAGCCCTTTG+TGG + chr6.1:31292220-31292239 MS.gene83962:intron 40.0%
GTTGGATCTCCTGATTACTA+TGG + chr6.1:31296522-31296541 MS.gene83962:CDS 40.0%
TATACAAGATCGATCAGTGG+AGG + chr6.1:31296396-31296415 MS.gene83962:CDS 40.0%
TATTGACCGCTTGGTAGAAA+AGG - chr6.1:31294847-31294866 None:intergenic 40.0%
TCATTGCTGCAACCACAATT+TGG - chr6.1:31293254-31293273 None:intergenic 40.0%
TGGGAAAAAACCCTGAACTT+TGG + chr6.1:31295059-31295078 MS.gene83962:intron 40.0%
TGGTGGCTATTCAAAGAAAG+AGG + chr6.1:31294079-31294098 MS.gene83962:CDS 40.0%
TTGGTATGTTGCAGTCTCAT+TGG + chr6.1:31293540-31293559 MS.gene83962:intron 40.0%
! ACATATCGCCTTTAAGGACA+GGG - chr6.1:31296356-31296375 None:intergenic 40.0%
! AGTTAGGTGGTGGTTAACTT+TGG + chr6.1:31292052-31292071 MS.gene83962:intron 40.0%
! ATGCTTCTAGAAGCTGACTA+AGG + chr6.1:31292307-31292326 MS.gene83962:intron 40.0%
! ATGTTGCAGTCTCATTGGTT+TGG + chr6.1:31293545-31293564 MS.gene83962:intron 40.0%
! CAAAGGCTTTTTGTCGGATA+AGG + chr6.1:31293497-31293516 MS.gene83962:CDS 40.0%
! CCAGGCTTTAATATGGGATT+GGG + chr6.1:31295040-31295059 MS.gene83962:intron 40.0%
! GCCTTATAAAACCGACTTTG+AGG + chr6.1:31293014-31293033 MS.gene83962:intron 40.0%
! GCTTCGTGATTCTTGATAGT+GGG + chr6.1:31293282-31293301 MS.gene83962:intron 40.0%
!! CTTCGTGATTCTTGATAGTG+GGG + chr6.1:31293283-31293302 MS.gene83962:intron 40.0%
!! GATTGTGTCTTAGGTTGACT+TGG + chr6.1:31294801-31294820 MS.gene83962:intron 40.0%
!! TAAAACCGACTTTGAGGTGA+AGG + chr6.1:31293020-31293039 MS.gene83962:intron 40.0%
!! TTCTAGAAGCATCTAGAAGC+AGG - chr6.1:31292299-31292318 None:intergenic 40.0%
!! TTGAAGAAAGTACCTGACCT+TGG - chr6.1:31291700-31291719 None:intergenic 40.0%
AACCCTCTTTCCTGAATCAG+TGG + chr6.1:31295822-31295841 MS.gene83962:CDS 45.0%
ACCTTGGTTGCCAAGAGATT+TGG - chr6.1:31291684-31291703 None:intergenic 45.0%
ACTTAAGCTCCAAGCAAGCT+GGG + chr6.1:31292258-31292277 MS.gene83962:intron 45.0%
AGAGAACAGCAAGCCTTTAC+AGG + chr6.1:31295669-31295688 MS.gene83962:intron 45.0%
ATCACAGGCAAATACTGGTG+TGG - chr6.1:31295598-31295617 None:intergenic 45.0%
ATTTATAGCCCTTTGTGGGC+TGG + chr6.1:31292225-31292244 MS.gene83962:intron 45.0%
ATTTGACCAGCTGCTACTCT+TGG - chr6.1:31296226-31296245 None:intergenic 45.0%
CAAGAATCACGAAGCGATTG+TGG - chr6.1:31293277-31293296 None:intergenic 45.0%
CACGTGTTGTCCAAATCTCT+TGG + chr6.1:31291671-31291690 MS.gene83962:CDS 45.0%
CAGACCACATATCGCCTTTA+AGG - chr6.1:31296362-31296381 None:intergenic 45.0%
CATAATGGCTCCAAAGGACT+AGG - chr6.1:31292354-31292373 None:intergenic 45.0%
CATCTCTCGAATGCTACTCA+AGG + chr6.1:31295793-31295812 MS.gene83962:CDS 45.0%
CCCAATCCCATATTAAAGCC+TGG - chr6.1:31295043-31295062 None:intergenic 45.0%
CGCTTCGTGATTCTTGATAG+TGG + chr6.1:31293281-31293300 MS.gene83962:intron 45.0%
CTGCATTCCCTTTAACTGGT+TGG - chr6.1:31296272-31296291 None:intergenic 45.0%
CTGTCCTTAAAGGCGATATG+TGG + chr6.1:31296355-31296374 MS.gene83962:CDS 45.0%
CTTTAAATGGACCCCTCAAG+TGG - chr6.1:31291817-31291836 None:intergenic 45.0%
GAAGAAGGTGATGAGGAGAA+AGG - chr6.1:31291445-31291464 None:intergenic 45.0%
GAGATCCAACCATGTAGACA+GGG - chr6.1:31296512-31296531 None:intergenic 45.0%
GAGATTTGGACAACACGTGA+AGG - chr6.1:31291670-31291689 None:intergenic 45.0%
GAGGTTCTCCAACCAGTTAA+AGG + chr6.1:31296261-31296280 MS.gene83962:CDS 45.0%
GCTCTTACGTTTCACCTCAT+AGG + chr6.1:31294725-31294744 MS.gene83962:intron 45.0%
GGGGTGATGTGGCAAAATAA+AGG + chr6.1:31293730-31293749 MS.gene83962:intron 45.0%
GTGGTTGCATCAGCCATATT+TGG + chr6.1:31295286-31295305 MS.gene83962:intron 45.0%
GTTACAAATGTGGGGTGATG+TGG + chr6.1:31293719-31293738 MS.gene83962:intron 45.0%
TAACACCTTCTTTCTCCGAC+AGG + chr6.1:31291478-31291497 MS.gene83962:CDS 45.0%
TCCAAATCTCTTGGCAACCA+AGG + chr6.1:31291680-31291699 MS.gene83962:CDS 45.0%
TCCTGAATCAGTGGTGAGTA+CGG + chr6.1:31295831-31295850 MS.gene83962:intron 45.0%
TCTCTCGAATGCTACTCAAG+GGG + chr6.1:31295795-31295814 MS.gene83962:CDS 45.0%
TGGACCATCTGCATTCCTAA+AGG - chr6.1:31292615-31292634 None:intergenic 45.0%
! CACATATCGCCTTTAAGGAC+AGG - chr6.1:31296357-31296376 None:intergenic 45.0%
! CTTCTAGAAGCTGACTAAGG+CGG + chr6.1:31292310-31292329 MS.gene83962:intron 45.0%
! GCCAGGCTTTAATATGGGAT+TGG + chr6.1:31295039-31295058 MS.gene83962:intron 45.0%
! GTGCTTTCAGATGCTTGCTA+GGG + chr6.1:31292530-31292549 MS.gene83962:intron 45.0%
! TGCTTTCAGATGCTTGCTAG+GGG + chr6.1:31292531-31292550 MS.gene83962:intron 45.0%
! TGTGCCTTTAGGAATGCAGA+TGG + chr6.1:31292608-31292627 MS.gene83962:intron 45.0%
!! AAGAAGGTGTTAGAAGCGAG+AGG - chr6.1:31291470-31291489 None:intergenic 45.0%
!! AGAAGGTGTTAGAAGCGAGA+GGG - chr6.1:31291469-31291488 None:intergenic 45.0%
!! CACCACTGATTCAGGAAAGA+GGG - chr6.1:31295827-31295846 None:intergenic 45.0%
!! CTAGTCCTTTGGAGCCATTA+TGG + chr6.1:31292352-31292371 MS.gene83962:intron 45.0%
!! TCACCACTGATTCAGGAAAG+AGG - chr6.1:31295828-31295847 None:intergenic 45.0%
!! TCCTTTGGAGCCATTATGGA+GGG + chr6.1:31292356-31292375 MS.gene83962:intron 45.0%
!!! GAGGTTTTAAACTGTGGTCG+CGG - chr6.1:31295348-31295367 None:intergenic 45.0%
!!! ATATATATTTTTTTTAAACT+CGG + chr6.1:31291750-31291769 MS.gene83962:intron 5.0%
AAATGGACCCCTCAAGTGGA+CGG - chr6.1:31291813-31291832 None:intergenic 50.0%
AAGGCACAGATGCCTCAAGA+AGG - chr6.1:31292596-31292615 None:intergenic 50.0%
AATCTCACCGTCCACTTGAG+GGG + chr6.1:31291803-31291822 MS.gene83962:intron 50.0%
ACGGTCTGCAATCGCAATTG+TGG + chr6.1:31295222-31295241 MS.gene83962:intron 50.0%
AGAGGGTGAAGAAGGTGATG+AGG - chr6.1:31291452-31291471 None:intergenic 50.0%
AGGGAAAGTCTCAACTACGC+TGG + chr6.1:31296416-31296435 MS.gene83962:CDS 50.0%
AGGTCCGGTTGATCCCAATT+TGG - chr6.1:31295752-31295771 None:intergenic 50.0%
ATCTCTTGGCAACCAAGGTC+AGG + chr6.1:31291685-31291704 MS.gene83962:intron 50.0%
CAACCACACTGACACAGTCA+CGG - chr6.1:31295273-31295292 None:intergenic 50.0%
CAAGCATGGCCTCGAATCAT+TGG - chr6.1:31292696-31292715 None:intergenic 50.0%
CAATCTCACCGTCCACTTGA+GGG + chr6.1:31291802-31291821 MS.gene83962:intron 50.0%
CAATGATTCGAGGCCATGCT+TGG + chr6.1:31292694-31292713 MS.gene83962:intron 50.0%
CACTGTTGCCATCAAAGGTC+CGG - chr6.1:31295767-31295786 None:intergenic 50.0%
CAGCAACGGGAGAATGTCAA+CGG + chr6.1:31296484-31296503 MS.gene83962:CDS 50.0%
CGGCGAACCGACTAATTTGA+TGG + chr6.1:31291777-31291796 MS.gene83962:intron 50.0%
CGTGCTTTCAGATGCTTGCT+AGG + chr6.1:31292529-31292548 MS.gene83962:intron 50.0%
CTCTCGAATGCTACTCAAGG+GGG + chr6.1:31295796-31295815 MS.gene83962:CDS 50.0%
GACTTAAGCTCCAAGCAAGC+TGG + chr6.1:31292257-31292276 MS.gene83962:intron 50.0%
GCGTGTAAGCTACTCTTGTC+AGG - chr6.1:31296327-31296346 None:intergenic 50.0%
GGAGATCCAACCATGTAGAC+AGG - chr6.1:31296513-31296532 None:intergenic 50.0%
TAAGCACGAGTCTTGGGACA+AGG + chr6.1:31292441-31292460 MS.gene83962:intron 50.0%
TAGAAGCGAGAGGGTGAAGA+AGG - chr6.1:31291460-31291479 None:intergenic 50.0%
TCAACGGAACCCTGTCTACA+TGG + chr6.1:31296500-31296519 MS.gene83962:CDS 50.0%
TCAATCTCACCGTCCACTTG+AGG + chr6.1:31291801-31291820 MS.gene83962:intron 50.0%
TGCAATCGCAATTGTGGCTG+CGG + chr6.1:31295228-31295247 MS.gene83962:intron 50.0%
TGTAGGTCCTAACCTGCTCT+CGG + chr6.1:31295160-31295179 MS.gene83962:intron 50.0%
TGTCCCAAGACTCGTGCTTA+GGG - chr6.1:31292441-31292460 None:intergenic 50.0%
TTGTCCCAAGACTCGTGCTT+AGG - chr6.1:31292442-31292461 None:intergenic 50.0%
TTTAAACTGTGGTCGCGGTC+CGG - chr6.1:31295343-31295362 None:intergenic 50.0%
TTTCCGTGACTGTGTCAGTG+TGG + chr6.1:31295267-31295286 MS.gene83962:intron 50.0%
! CCACAGTTTAAAACCTCCCC+TGG + chr6.1:31295351-31295370 MS.gene83962:intron 50.0%
! CCAGAGCCTTTTCTACCAAG+CGG + chr6.1:31294838-31294857 MS.gene83962:intron 50.0%
! CTTGAGGCATCTGTGCCTTT+AGG + chr6.1:31292597-31292616 MS.gene83962:intron 50.0%
! GATCTAAAGCCCAGCTTGCT+TGG - chr6.1:31292270-31292289 None:intergenic 50.0%
! GCTTTCAGATGCTTGCTAGG+GGG + chr6.1:31292532-31292551 MS.gene83962:intron 50.0%
! GTGATAATGATGTCCAGGGG+AGG - chr6.1:31295367-31295386 None:intergenic 50.0%
!! GTCCTTTGGAGCCATTATGG+AGG + chr6.1:31292355-31292374 MS.gene83962:intron 50.0%
!!! CCAGGGGAGGTTTTAAACTG+TGG - chr6.1:31295354-31295373 None:intergenic 50.0%
AAAGCCCTCCAGAAAGGCTC+AGG - chr6.1:31292384-31292403 None:intergenic 55.0%
AAGAAGGCTCCCTGAAGCTC+GGG - chr6.1:31292580-31292599 None:intergenic 55.0%
ACGCTGTAACCAGCCCACAA+AGG - chr6.1:31292237-31292256 None:intergenic 55.0%
AGCTTCAGGGAGCCTTCTTG+AGG + chr6.1:31292581-31292600 MS.gene83962:intron 55.0%
CAAGAAGGCTCCCTGAAGCT+CGG - chr6.1:31292581-31292600 None:intergenic 55.0%
CACAGACCAAGAGTAGCAGC+TGG + chr6.1:31296217-31296236 MS.gene83962:intron 55.0%
CAGCTGCTACTCTTGGTCTG+TGG - chr6.1:31296219-31296238 None:intergenic 55.0%
CAGTTGGGCAACCTGCTATC+AGG - chr6.1:31292925-31292944 None:intergenic 55.0%
CCGCTTGGTAGAAAAGGCTC+TGG - chr6.1:31294841-31294860 None:intergenic 55.0%
CGCTGTAACCAGCCCACAAA+GGG - chr6.1:31292236-31292255 None:intergenic 55.0%
CGGAACCCTGTCTACATGGT+TGG + chr6.1:31296504-31296523 MS.gene83962:CDS 55.0%
GCCCTCCATAATGGCTCCAA+AGG - chr6.1:31292360-31292379 None:intergenic 55.0%
GCTCGATGCCCTGTCCTTAA+AGG + chr6.1:31296345-31296364 MS.gene83962:CDS 55.0%
GGGATCAACCGGACCTTTGA+TGG + chr6.1:31295756-31295775 MS.gene83962:CDS 55.0%
GTCACCGCTATCAGACCACT+CGG - chr6.1:31292903-31292922 None:intergenic 55.0%
GTCCCAAGACTCGTGCTTAG+GGG - chr6.1:31292440-31292459 None:intergenic 55.0%
TCACCGCTATCAGACCACTC+GGG - chr6.1:31292902-31292921 None:intergenic 55.0%
TCCCAAGACTCGTGCTTAGG+GGG - chr6.1:31292439-31292458 None:intergenic 55.0%
TTGTCCAGCTTGGGCAGCAA+CGG + chr6.1:31296470-31296489 MS.gene83962:CDS 55.0%
! AGCCTTTCTGGAGGGCTTTC+AGG + chr6.1:31292385-31292404 MS.gene83962:intron 55.0%
! GATAGCGGTGACCTGATAGC+AGG + chr6.1:31292911-31292930 MS.gene83962:intron 55.0%
! GCAGGTTGCCCAACTGATTC+TGG + chr6.1:31292929-31292948 MS.gene83962:intron 55.0%
! TTCAGATGCTTGCTAGGGGG+CGG + chr6.1:31292535-31292554 MS.gene83962:intron 55.0%
!! GCCGTACTCACCACTGATTC+AGG - chr6.1:31295835-31295854 None:intergenic 55.0%
ACTCGGGCCATGCTCCAGAT+GGG - chr6.1:31292886-31292905 None:intergenic 60.0%
AGCAGAGCCGAGAGCAGGTT+AGG - chr6.1:31295170-31295189 None:intergenic 60.0%
AGCCCCCTAAGCACGAGTCT+TGG + chr6.1:31292434-31292453 MS.gene83962:intron 60.0%
AGGGACACACCCGAGCTTCA+GGG + chr6.1:31292568-31292587 MS.gene83962:intron 60.0%
ATGCTCCAGATGGGCGTGAG+GGG - chr6.1:31292877-31292896 None:intergenic 60.0%
CAAACAGCAGAGCCGAGAGC+AGG - chr6.1:31295175-31295194 None:intergenic 60.0%
CATGCTCCAGATGGGCGTGA+GGG - chr6.1:31292878-31292897 None:intergenic 60.0%
GAGCGGAAAGATGGACGCGT+GGG + chr6.1:31291868-31291887 MS.gene83962:intron 60.0%
GCCCCCTAAGCACGAGTCTT+GGG + chr6.1:31292435-31292454 MS.gene83962:intron 60.0%
GGCCTGAAAGCCCTCCAGAA+AGG - chr6.1:31292390-31292409 None:intergenic 60.0%
TGAGCGGAAAGATGGACGCG+TGG + chr6.1:31291867-31291886 MS.gene83962:intron 60.0%
TGGAGGGCTTTCAGGCCCTT+GGG + chr6.1:31292393-31292412 MS.gene83962:intron 60.0%
TGGCCCGAGTGGTCTGATAG+CGG + chr6.1:31292896-31292915 MS.gene83962:intron 60.0%
TGTCCAGCTTGGGCAGCAAC+GGG + chr6.1:31296471-31296490 MS.gene83962:CDS 60.0%
ACTAAGGCGGCGCCTCTGGA+AGG + chr6.1:31292323-31292342 MS.gene83962:intron 65.0%
CACTCGGGCCATGCTCCAGA+TGG - chr6.1:31292887-31292906 None:intergenic 65.0%
CCATGCTCCAGATGGGCGTG+AGG - chr6.1:31292879-31292898 None:intergenic 65.0%
CTGGAGGGCTTTCAGGCCCT+TGG + chr6.1:31292392-31292411 MS.gene83962:intron 65.0%
GACTCGTGCTTAGGGGGCTG+TGG - chr6.1:31292433-31292452 None:intergenic 65.0%
GAGGGACACACCCGAGCTTC+AGG + chr6.1:31292567-31292586 MS.gene83962:intron 65.0%
GGCGCCTGAGCCTTTCTGGA+GGG + chr6.1:31292377-31292396 MS.gene83962:intron 65.0%
GGCTCAGGCGCCCTCCATAA+TGG - chr6.1:31292369-31292388 None:intergenic 65.0%
TACACCCCCTCACGCCCATC+TGG + chr6.1:31292869-31292888 MS.gene83962:intron 65.0%
TCTCCCGTTGCTGCCCAAGC+TGG - chr6.1:31296477-31296496 None:intergenic 65.0%
TGCTCCAGATGGGCGTGAGG+GGG - chr6.1:31292876-31292895 None:intergenic 65.0%
! CATCTGGAGCATGGCCCGAG+TGG + chr6.1:31292885-31292904 MS.gene83962:intron 65.0%
! CCTCACGCCCATCTGGAGCA+TGG + chr6.1:31292876-31292895 MS.gene83962:intron 65.0%
! CTAAGGCGGCGCCTCTGGAA+GGG + chr6.1:31292324-31292343 MS.gene83962:intron 65.0%
! GAAGGGCGCGCCTAGTCCTT+TGG + chr6.1:31292341-31292360 MS.gene83962:intron 65.0%
CTCGGGTGTGTCCCTCCGAG+AGG - chr6.1:31292563-31292582 None:intergenic 70.0%
GACTAGGCGCGCCCTTCCAG+AGG - chr6.1:31292338-31292357 None:intergenic 70.0%
GCTGACTAAGGCGGCGCCTC+TGG + chr6.1:31292319-31292338 MS.gene83962:intron 70.0%
GGGCGCCTGAGCCTTTCTGG+AGG + chr6.1:31292376-31292395 MS.gene83962:intron 70.0%
TGCTAGGGGGCGGTGCCTCT+CGG + chr6.1:31292545-31292564 MS.gene83962:intron 70.0%
!! GGAGGGCGCCTGAGCCTTTC+TGG + chr6.1:31292373-31292392 MS.gene83962:intron 70.0%
AGGGGGCGGTGCCTCTCGGA+GGG + chr6.1:31292549-31292568 MS.gene83962:intron 75.0%
TAGGGGGCGGTGCCTCTCGG+AGG + chr6.1:31292548-31292567 MS.gene83962:intron 75.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 31291429 31296575 31291429 ID=MS.gene83962
chr6.1 mRNA 31291429 31296575 31291429 ID=MS.gene83962.t1;Parent=MS.gene83962
chr6.1 exon 31291429 31291499 31291429 ID=MS.gene83962.t1.exon1;Parent=MS.gene83962.t1
chr6.1 CDS 31291429 31291499 31291429 ID=cds.MS.gene83962.t1;Parent=MS.gene83962.t1
chr6.1 exon 31291588 31291701 31291588 ID=MS.gene83962.t1.exon2;Parent=MS.gene83962.t1
chr6.1 CDS 31291588 31291701 31291588 ID=cds.MS.gene83962.t1;Parent=MS.gene83962.t1
chr6.1 exon 31293485 31293542 31293485 ID=MS.gene83962.t1.exon3;Parent=MS.gene83962.t1
chr6.1 CDS 31293485 31293542 31293485 ID=cds.MS.gene83962.t1;Parent=MS.gene83962.t1
chr6.1 exon 31294056 31294121 31294056 ID=MS.gene83962.t1.exon4;Parent=MS.gene83962.t1
chr6.1 CDS 31294056 31294121 31294056 ID=cds.MS.gene83962.t1;Parent=MS.gene83962.t1
chr6.1 exon 31295520 31295577 31295520 ID=MS.gene83962.t1.exon5;Parent=MS.gene83962.t1
chr6.1 CDS 31295520 31295577 31295520 ID=cds.MS.gene83962.t1;Parent=MS.gene83962.t1
chr6.1 exon 31295671 31295843 31295671 ID=MS.gene83962.t1.exon6;Parent=MS.gene83962.t1
chr6.1 CDS 31295671 31295843 31295671 ID=cds.MS.gene83962.t1;Parent=MS.gene83962.t1
chr6.1 exon 31296222 31296575 31296222 ID=MS.gene83962.t1.exon7;Parent=MS.gene83962.t1
chr6.1 CDS 31296222 31296575 31296222 ID=cds.MS.gene83962.t1;Parent=MS.gene83962.t1
Gene Sequence

>MS.gene83962

ATGTCTTTACTTACCTTTCTCCTCATCACCTTCTTCACCCTCTCGCTTCTAACACCTTCTTTCTCCGACAGGTAATTAAATTACACAAACACCCTTCCCTAATTTCACTCTAATTATTATTATTGTTTAATAATATGTTGTTAATATTTGTATTAGCAGCAGGAAAGAATTAAGGAACAAAAATGAAAATGTGTTAAAGCAGTTAAGAAATTCTGTTTATTATTCAAACAGAATTGATCCTTCACGTGTTGTCCAAATCTCTTGGCAACCAAGGTCAGGTACTTTCTTCAACTTTATTTCCCTTTATTCCTTTATTATTATATATATATTTTTTTTAAACTCGGTATTCGGCGAACCGACTAATTTGATGGTTCAATCTCACCGTCCACTTGAGGGGTCCATTTAAAGCCAAAACATAGCTCAATATTATTATTATTATGAGCGGAAAGATGGACGCGTGGGCAATATGTGCTCGTGTCTTGTCTTGTCGCATTTTTCTATTAGTTTGTTATGGGCAATTTGTAACAAATAAATGTTCATTTCCATTTGGCGTAGATTTAGTTTTAAATTTGAGATAATAGTGGATTGCTTTGTTCAGAAAAATGTCCAACTAAAATGTAGTTAGTTAGGTGGTGGTTAACTTTGGATTGTCTTGATATAATGGTTTATGCAATGATATGGTATAGATTTTTGGTTAATTATTATCCATTTTACATGTACTTGCTGTGAGTACAATATCAGATATTAGGGTTTAGTACTATATTGGTCGTGCCTTGAGAATGATTCCAAGAGTGGTATTTATAGCCCTTTGTGGGCTGGTTACAGCGTGACTTAAGCTCCAAGCAAGCTGGGCTTTAGATCTTTTTACCTGCTTCTAGATGCTTCTAGAAGCTGACTAAGGCGGCGCCTCTGGAAGGGCGCGCCTAGTCCTTTGGAGCCATTATGGAGGGCGCCTGAGCCTTTCTGGAGGGCTTTCAGGCCCTTGGGAATATATTAACGGTCCACAGCCCCCTAAGCACGAGTCTTGGGACAAGGCAAAATGATGAATCTATAAGGTTGATTGTTCATATAAGTAGGTTGATTGTTCATACAAGTTTTATCGTGCTTTCAGATGCTTGCTAGGGGGCGGTGCCTCTCGGAGGGACACACCCGAGCTTCAGGGAGCCTTCTTGAGGCATCTGTGCCTTTAGGAATGCAGATGGTCCATTACATATGCAAATTTTCAATTTTATATACATTTTTAACTTGTTTTTCTTATAAATTACCAATGATTCGAGGCCATGCTTGGATAAACAACTTAACTAGTTGTTTATTAGTAGAATTCGGTTATAATTTGGGTTGAATTTGACTCTGACTTACAAAATTGGCTTTTGACGTGAGAATTGCCCTAATTTATAAACACATTCGCAGACCATATTTTCATCAAATGTCAGACTCTAATACACCCCCTCACGCCCATCTGGAGCATGGCCCGAGTGGTCTGATAGCGGTGACCTGATAGCAGGTTGCCCAACTGATTCTGGATAAACATTTTTGGGTTGAGATCTAGGTATTAGAAACTTGGGTTGGGCCTAACTCTTACTCAGCCTTATAAAACCGACTTTGAGGTGAAGGTTTTCCCAACTTATAACCACATTGTTTGGCCATATTTTATCCAATGTTGGACTCTTAGCACTTATCATGCAAGTGTTTATGTATAATCTATTTCTATGTCAAAAGATAAAATCAAGTCAAAAAAAAATTCGTACATAGTTTTCATAAGCCATCATTGAGAGCTATGTAAATAAGTTGAAAACAACTTATTCCTTATTCATAAGTTCTTCCAAATTGTGGTTGCAGCAATGACCACAATCGCTTCGTGATTCTTGATAGTGGGGACAATTGCAGTTAAATATGACCTTAATAGTAGTTGTTGCATAGACATTTAAAACTTCAATGTCGTATGTTAAATCGCGATAGCAGACTTTTTTTTATGATACCCTTTTTACAGCTAGTTGATTCTTTTCTTGCTTATAGATTTTCAGACTTTGATGTTTTCTTGTTCCTTTTGCTGTAGGGTCTTTTTGTACAAAGGCTTTTTGTCGGATAAGGAGTGTGACTACCTTATTTATTTGGTATGTTGCAGTCTCATTGGTTTGGATTCTTATTTCTTCATATTTTTCACTAATAGTTATAATTATTCCATCCGATATATCTTTAATGAACATACATTGTCAGTGTAAATTAGTTTAATGGACATTCAAGGGAAGCCCTTCATTTTTCCATGCCATATCGTCATTTTAAATATACAGTTACAAATGTGGGGTGATGTGGCAAAATAAAGGATTTTCATTGTATATCAATGTAAAACTAATTTATGGTCACACTGCATTCCTTTACATCATTCACTTCATCACTTGGTTTTAATTATATTATAAGTAGAGGGGAGTTGAAGACTCTTCGCCATTTCTATTTAAGACTTTCAAACTAGTAAACTAGAGAAAATACAATGAGTTTTTTTTGCAATTCTTGGTAATAATATAAAAAAGATTCTCAAACAAATAAGTCACTTTTGTAGTTATGTTTTTGTTTTTCATTTGTTTTCAACTTGTTTTGTCGTTGATTTTTACTCTATTGTTTTTGCCAAGGCACAAGAAAAATCATCTGGAAATGGTGGCTATTCAAAGAAAGAGGAAACTTCATTGGATATGGATGTGAGCCTGAACTTTTTTCTATACTTATTTTGATGAACTAGGCACTAGTAAATTAGGTTATGTTCAGTGTTCACACTTGATAGTTATAGTTTGCATTGTGAAAATTTTCGGTTGTTCTAACGTTGTTCATTGTTTTCACCGATGGGAAAATCTTGTCTATTAGCTTATTCTTTGTGTAGGTCACTTCAAGAAAACTTACTGTAGGCCAATGTGACAGATTTCTGAATGATATTTACCATTTACTTAATGTAGGCCACTGTCAGAATAACTTCAAGAATAACTTAATGTAGGCCACTGTCAGATATAAACCATTCTTAGGGTCCGTTTACTTTGTGAAACGTTGTGTTTTTATTTTAAAAATGTGTGTTCATTTTACTGCGATGAGAACTTTTGAAGTGAATCATTGTGATGGAGAGATGATGAAATGTTAGTTAAAGATGCATTTCCAGAAATAATGAAAACAGTTTTTTTGACATTTTCATTGTTTATGGAAATGCATATAATCATTCACATCAAAAGTCTCTTACCTGTGCTTGTTAACAAGTAAAATTAACACAAATTTTAGAAAACGAAAAATAGAATATGTTTTCACAAAGTAAACAGGCTCTTACGTTTCACCTCATAGGTTTAGCTTGTTCTTTATAAATAATGATGTATGATATGTTACTAAACATGTACTGATTGTGTCTTAGGTTGACTTGGTTCTTAATTGGATACCAGAGCCTTTTCTACCAAGCGGTCAATAGTTATTGATCAACACATCCATTATGTTACATGTTCTTGTTGACTTTTCCTTCAATATTTCTGTCCTATAACACTCAATCAACCATAACTTGTAAGCCAAGTGTTTTGCAAGTAAATGTTGAATTTAATTTTATTGTCGAAAATTAATATAGGATTACTTGTAAAAGCAAATTGCCAGGCTTTAATATGGGATTGGGAAAAAACCCTGAACTTTGGACACTAATTACCTAATTAGTTAATTCCAAATTTTGAAAATGTAGAAGATGTCTTATAGAGTGCAACTACTCATATATTTGTAGGTCCTAACCTGCTCTCGGCTCTGCTGTTTGTGACTCTCAGCAGAAAGATATTGAAAAACGGTCTGCAATCGCAATTGTGGCTGCGGTGTCAAAGCTTTAATGTTTCCGTGACTGTGTCAGTGTGGTTGCATCAGCCATATTTGGCCATAATTTTCTGTAATTTAAAATATCATAACCGGACCGCGACCACAGTTTAAAACCTCCCCTGGACATCATTATCACTATAGCCAACATGTTGCAATTACTTGTTGTTTTAAGCTCGCTCCTTGACCATGAACAATTCATTAGTGTTATAAGTTATAGGCATGATATTGTAGACATTATTATGATGAGGTTCTACACTGTTCTGTTTTAGGATGATATTGTCAAGAGGATTGAAGAAAGACTTTCGGTTTGGACTTTTCTTCCTAAAGGTATCTATTTGATCAATCCACACCAGTATTTGCCTGTGATACAAATTCTAAAAGCTTATAATTGTCTTGTTTGTTGATTATCATTTCTACTAGAGAACAGCAAGCCTTTACAGGTCATGCATTATGGGCTTGAAAAAGATAGGCGGAACTTAGATTATTTCACAAACAAAACCAAATTGGGATCAACCGGACCTTTGATGGCAACAGTGATTCTACATCTCTCGAATGCTACTCAAGGGGGTCAAACCCTCTTTCCTGAATCAGTGGTGAGTACGGCAGTTCGAGTTTATCTTTTGCGTACTATTTATCTTTTAGGCTAAATTAAACCTTTGGTCCCTTAAGTCATTTTTAGGTTTCACTATTGCCCCTTAATTTTTTTTTTCCGTTTCATTTTAGTCCCTTCAGTTATAAATGTTACTTTGATTCTCTTTATCATTTTTCATTCGAGTCCATAGGAAACATTTGACGAACTCAAACAAAAAACTAGCAGAAAATGACCAAAGTGTGTAATGATTGTAATTTAAGGGACCAAAATGAAACGTAAAAACTTGGACCAAAGTGAAACCTAAAAATAACAGTGTAATTTAGGATATCTTGTTCTGGACCTTTGTTTTCTTTTTGATTATGTTGAATGTATTCCACAGACCAAGAGTAGCAGCTGGTCAAATTGTAGAAATAACAGTGAGGTTCTCCAACCAGTTAAAGGGAATGCAGTTCTGTTTTTCTCTCTTAACCTAAATACATCTCCTGACAAGAGTAGCTTACACGCTCGATGCCCTGTCCTTAAAGGCGATATGTGGTCTGCAATTAAATTCTTCTATACAAGATCGATCAGTGGAGGGAAAGTCTCAACTACGCTGGAAGATGAAGATTGTACTGATGAAGATGATAGTTGTCCAGCTTGGGCAGCAACGGGAGAATGTCAACGGAACCCTGTCTACATGGTTGGATCTCCTGATTACTATGGTACTTGTCGGAAAAGCTGCAATGCATGCTGA

Protein sequence

>MS.gene83962.t1

MSLLTFLLITFFTLSLLTPSFSDSRKELRNKNENVLKQLRNSVYYSNRIDPSRVVQISWQPRVFLYKGFLSDKECDYLIYLAQEKSSGNGGYSKKEETSLDMDDDIVKRIEERLSVWTFLPKENSKPLQVMHYGLEKDRRNLDYFTNKTKLGSTGPLMATVILHLSNATQGGQTLFPESVTKSSSWSNCRNNSEVLQPVKGNAVLFFSLNLNTSPDKSSLHARCPVLKGDMWSAIKFFYTRSISGGKVSTTLEDEDCTDEDDSCPAWAATGECQRNPVYMVGSPDYYGTCRKSCNAC