AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene84301

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84301.t1 MTR_2g086970 96.196 368 11 2 1 367 1 366 0.0 707
MS.gene84301.t1 MTR_7g105250 56.640 369 137 9 1 367 1 348 3.76e-116 341
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84301.t1 AT1G08370 61.170 376 126 7 1 366 1 366 2.25e-143 411

Find 108 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGCTACAATTTCTTCTTC+TGG 0.192913 2.2:-11944189 MS.gene84301:CDS
GTTGGCATAAGCAGAAAATT+TGG 0.247413 2.2:-11946656 MS.gene84301:intron
GGACAATCAATTCATTGATA+TGG 0.252052 2.2:-11943519 MS.gene84301:CDS
CTCAAGAAGTGAATGGTATT+TGG 0.265191 2.2:-11946567 MS.gene84301:CDS
CTGCTACAATTTCTTCTTCT+GGG 0.274194 2.2:-11944188 MS.gene84301:CDS
TGCTCTTCTGGTGCTCGTTC+AGG 0.312100 2.2:-11943803 MS.gene84301:intron
AAAGGTCCGAGATGCTCTTC+TGG 0.324060 2.2:-11943815 MS.gene84301:CDS
CAAGGTGCCTCCAAAGTTAA+AGG 0.330072 2.2:-11945980 MS.gene84301:CDS
GTAGATGAGACCTTTAACTT+TGG 0.337185 2.2:+11945970 None:intergenic
ATTATTATTGCAGGCGGCTA+TGG 0.339720 2.2:-11944262 MS.gene84301:intron
ATCACAATAAACTGAAATCT+TGG 0.354748 2.2:+11947958 None:intergenic
TGAGAAGCTTAGTGCTTTGT+TGG 0.358743 2.2:+11948339 None:intergenic
GGATTTCGAGTATGAAGTTC+AGG 0.364421 2.2:-11946617 MS.gene84301:CDS
GATCTCTCTTTGTTGTTAAG+AGG 0.370391 2.2:-11948114 MS.gene84301:intron
GTGCTTTGTTGGTCGAGATT+TGG 0.371049 2.2:+11948350 None:intergenic
GGTGGAGTTGGAGGTGGAAA+TGG 0.371979 2.2:+11943892 None:intergenic
TTGCAGTGAGTTTGAGGAAC+TGG 0.375437 2.2:-11945176 MS.gene84301:intron
GCAAGTGAAGGTGGTGGAGT+TGG 0.385923 2.2:+11943880 None:intergenic
TGGACTCAGGAGCATCATGC+TGG 0.387575 2.2:+11944085 None:intergenic
GATGAGACCTTTAACTTTGG+AGG 0.390680 2.2:+11945973 None:intergenic
CATTTATTGCAGTGAGTTTG+AGG 0.395892 2.2:-11945182 MS.gene84301:intron
TTTATAAAGGATGGATCATC+AGG 0.396436 2.2:+11945076 None:intergenic
TCTCTAGAAATAGCTGGGTT+TGG 0.396689 2.2:+11943838 None:intergenic
GTGATGAATCGTCGTAATAC+TGG 0.399755 2.2:-11947940 MS.gene84301:intron
TACACTGAAGAAATTTATAA+AGG 0.413641 2.2:+11945063 None:intergenic
GTACAAGTACAACGACCTTA+TGG 0.413886 2.2:-11943931 MS.gene84301:CDS
AAGGTTGGCAGTGGCCCAAC+AGG 0.419285 2.2:+11944147 None:intergenic
GCATTTCTATACAATAGATA+TGG 0.429283 2.2:+11946592 None:intergenic
TGTGGCTCGGCTGCTGCTGT+TGG 0.433262 2.2:+11944065 None:intergenic
AAGTGGAGGGGCAGTAGGTA+TGG 0.435273 2.2:+11943969 None:intergenic
TTGCAGGCGGCTATGGGTAT+CGG 0.440823 2.2:-11944255 MS.gene84301:intron
CCCAGCTATTTCTAGAGAAA+AGG 0.446855 2.2:-11943833 MS.gene84301:CDS
ACTCATGCTGCTACACCTGT+TGG 0.450388 2.2:-11944162 MS.gene84301:CDS
TCATCATTGCAGTAGAAGTA+AGG 0.451566 2.2:+11944010 None:intergenic
TGCAGGCGGCTATGGGTATC+GGG 0.455446 2.2:-11944254 MS.gene84301:intron
GTTTGGAAGGGGAGAAGAAA+CGG 0.465407 2.2:+11943855 None:intergenic
AGTGAAGGTGGTGGAGTTGG+AGG 0.465872 2.2:+11943883 None:intergenic
GAAGGTGGTGGAGTTGGAGG+TGG 0.470507 2.2:+11943886 None:intergenic
CTCATGCTGCTACACCTGTT+GGG 0.470653 2.2:-11944161 MS.gene84301:CDS
AGAAGGCTTCACAAGATTTG+TGG 0.471767 2.2:+11944047 None:intergenic
TTTGGAAGGGGAGAAGAAAC+GGG 0.474369 2.2:+11943856 None:intergenic
GGATGAAGTGGAGGGGCAGT+AGG 0.474418 2.2:+11943964 None:intergenic
CGGCTGCTGCTGTTGGACTC+AGG 0.475688 2.2:+11944072 None:intergenic
GCCCCTCCACTTCATCCTAC+TGG 0.476559 2.2:-11943958 MS.gene84301:CDS
TAGAAATAGCTGGGTTTGGA+AGG 0.479374 2.2:+11943842 None:intergenic
AAATTTGGTGGAAAACCTCC+TGG 0.485123 2.2:-11946641 MS.gene84301:CDS
CTGAAGAAATTTATAAAGGA+TGG 0.488509 2.2:+11945067 None:intergenic
ACTGGAAGCAGTACCAACTA+TGG 0.489454 2.2:-11945158 MS.gene84301:CDS
TAGCATCGATCTCAGCCAAT+GGG 0.503195 2.2:-11948237 MS.gene84301:intron
CAGAGTCGTAAGGATGTTGA+AGG 0.503957 2.2:-11948136 MS.gene84301:CDS
GGAGTAGATGTTGGAAGAGA+TGG 0.504565 2.2:+11944117 None:intergenic
ATCAGGAACATCAGCTACAT+TGG 0.504995 2.2:+11945093 None:intergenic
GCTTCACAAGATTTGTGGCT+CGG 0.516612 2.2:+11944052 None:intergenic
CAACGAAAGGGTCAATTCGT+TGG 0.524030 2.2:+11948303 None:intergenic
CTTTAACTTTGGAGGCACCT+TGG 0.524695 2.2:+11945981 None:intergenic
GGACTCAGGAGCATCATGCT+GGG 0.525944 2.2:+11944086 None:intergenic
GGTGGAAATGGCTGTAGCAT+TGG 0.536920 2.2:+11943904 None:intergenic
GAAATAGCTGGGTTTGGAAG+GGG 0.537359 2.2:+11943844 None:intergenic
AGAGATGGTATCTGCAAGGT+TGG 0.539591 2.2:+11944132 None:intergenic
TTATTATTGCAGGCGGCTAT+GGG 0.542121 2.2:-11944261 MS.gene84301:intron
CCATCCATGACTGCCATAGT+TGG 0.543119 2.2:+11945145 None:intergenic
TGAGAATTTCCTCAACGAAA+GGG 0.543518 2.2:+11948291 None:intergenic
TGTAGCATTGGAGTACCATA+AGG 0.543996 2.2:+11943916 None:intergenic
GGTGTAAGCGGAGTAGATGT+TGG 0.546568 2.2:+11944108 None:intergenic
ATTGTAGCAGAAGACTGATA+AGG 0.546760 2.2:+11944201 None:intergenic
AGAAGACTGATAAGGTTGTC+CGG 0.549406 2.2:+11944209 None:intergenic
GGTATCTGCAAGGTTGGCAG+TGG 0.554970 2.2:+11944138 None:intergenic
ATGAGAATTTCCTCAACGAA+AGG 0.557425 2.2:+11948290 None:intergenic
CATCATTGCAGTAGAAGTAA+GGG 0.561079 2.2:+11944011 None:intergenic
AATGCTGCTCAAGAAGTGAA+TGG 0.565199 2.2:-11946574 MS.gene84301:CDS
AGAAATAGCTGGGTTTGGAA+GGG 0.568715 2.2:+11943843 None:intergenic
GGCATAAGCAGAAAATTTGG+TGG 0.569335 2.2:-11946653 MS.gene84301:intron
ACTTCAAATGCTCATATCAC+CGG 0.575143 2.2:-11944228 MS.gene84301:CDS
GTTGATGATGATGGCTCAAG+AGG 0.578483 2.2:+11945121 None:intergenic
GTAGGTATGGATGAAGACAC+GGG 0.580863 2.2:+11943982 None:intergenic
ACGAATTGACCCTTTCGTTG+AGG 0.585086 2.2:-11948300 MS.gene84301:CDS
ACAGTACCAGTAGGATGAAG+TGG 0.589976 2.2:+11943952 None:intergenic
AGTACCAACTATGGCAGTCA+TGG 0.591187 2.2:-11945149 MS.gene84301:CDS
ACGGGAGCAAGTGAAGGTGG+TGG 0.592881 2.2:+11943874 None:intergenic
GCATCATGCTGGGGTGTAAG+CGG 0.600785 2.2:+11944096 None:intergenic
AATTTGGTGGAAAACCTCCT+GGG 0.602967 2.2:-11946640 MS.gene84301:CDS
GACTCAGGAGCATCATGCTG+GGG 0.604546 2.2:+11944087 None:intergenic
GAAACGGGAGCAAGTGAAGG+TGG 0.605311 2.2:+11943871 None:intergenic
CCAACTATGGCAGTCATGGA+TGG 0.605321 2.2:-11945145 MS.gene84301:CDS
ACCAGTAGGATGAAGTGGAG+GGG 0.607968 2.2:+11943957 None:intergenic
TTAGCATCGATCTCAGCCAA+TGG 0.608501 2.2:-11948238 MS.gene84301:CDS
TAATGCTCGCGAATGTGAAG+AGG 0.613598 2.2:-11946539 MS.gene84301:CDS
CGAGCACCAGAAGAGCATCT+CGG 0.613645 2.2:+11943809 None:intergenic
TACCAGTAGGATGAAGTGGA+GGG 0.613698 2.2:+11943956 None:intergenic
TAAAGGTCTCATCTACAAAG+AGG 0.614588 2.2:-11945963 MS.gene84301:intron
ACAGGTGTAGCAGCATGAGT+TGG 0.617968 2.2:+11944165 None:intergenic
TTGGAAGTAGTTGATGATGA+TGG 0.619350 2.2:+11945112 None:intergenic
TAAACTCATAGAACGTAACA+TGG 0.625611 2.2:+11948258 None:intergenic
GAAGAAACGGGAGCAAGTGA+AGG 0.633795 2.2:+11943868 None:intergenic
AGTAGGTATGGATGAAGACA+CGG 0.634463 2.2:+11943981 None:intergenic
ATTTGGTGGAAAACCTCCTG+GGG 0.636956 2.2:-11946639 MS.gene84301:CDS
GTACCAGTAGGATGAAGTGG+AGG 0.640592 2.2:+11943955 None:intergenic
ATCATTGCAGTAGAAGTAAG+GGG 0.646155 2.2:+11944012 None:intergenic
GATTCTTAATGCATATGCCA+AGG 0.648448 2.2:-11945998 MS.gene84301:CDS
AACGCAACAATGTCTCAGAA+CGG 0.658570 2.2:-11948383 None:intergenic
TGTACTTGTACAGTACCAGT+AGG 0.670268 2.2:+11943943 None:intergenic
AAACTCATAGAACGTAACAT+GGG 0.715028 2.2:+11948259 None:intergenic
TTTGGTGGAAAACCTCCTGG+GGG 0.721595 2.2:-11946638 MS.gene84301:CDS
TGGAAGAGATGGTATCTGCA+AGG 0.725008 2.2:+11944128 None:intergenic
ATTGCAGTAGAAGTAAGGGG+AGG 0.736212 2.2:+11944015 None:intergenic
TAGGTATGGATGAAGACACG+GGG 0.739412 2.2:+11943983 None:intergenic
AGGTATGGATGAAGACACGG+GGG 0.768571 2.2:+11943984 None:intergenic
GGTATGGATGAAGACACGGG+GGG 0.779869 2.2:+11943985 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATAAATAAATAAATAA+TGG + chr2.2:11948271-11948290 None:intergenic 0.0%
!! GTCAATAATTAAATATAAAA+AGG + chr2.2:11944911-11944930 None:intergenic 10.0%
!!! AAATTTTGGTTTTTTTTAAT+GGG - chr2.2:11943771-11943790 MS.gene84301:intron 10.0%
!!! AGTTTTTCAATTTTAAAAAT+AGG + chr2.2:11944785-11944804 None:intergenic 10.0%
!!! ATATTCATGTAAAATATTTT+CGG - chr2.2:11946987-11947006 MS.gene84301:intron 10.0%
!!! GATTTTTTTTTCTTTTAATA+TGG - chr2.2:11947086-11947105 MS.gene84301:intron 10.0%
!!! GTTAAATTTTAAATTTGATT+TGG - chr2.2:11943988-11944007 MS.gene84301:CDS 10.0%
!!! TAATAATATATTTTACAGTT+AGG - chr2.2:11944470-11944489 MS.gene84301:intron 10.0%
!!! TCTTTTATACTTAAATTTAT+AGG - chr2.2:11944499-11944518 MS.gene84301:intron 10.0%
!!! TTTTTTTTTCTTTTAATATG+GGG - chr2.2:11947088-11947107 MS.gene84301:intron 10.0%
!! ATGTCACATAAAAATTTAAA+AGG + chr2.2:11944887-11944906 None:intergenic 15.0%
!! GAAGAATTAAAAATTGTATT+TGG + chr2.2:11947281-11947300 None:intergenic 15.0%
!! TGTCACATAAAAATTTAAAA+GGG + chr2.2:11944886-11944905 None:intergenic 15.0%
!!! AAAGTACAATTTTTTCTTTT+AGG - chr2.2:11945678-11945697 MS.gene84301:intron 15.0%
!!! AAATTTATAGGATTTGTTTT+AGG - chr2.2:11944511-11944530 MS.gene84301:intron 15.0%
!!! AAGTACAATTTTTTCTTTTA+GGG - chr2.2:11945679-11945698 MS.gene84301:intron 15.0%
!!! AATTTTGGTTTTTTTTAATG+GGG - chr2.2:11943772-11943791 MS.gene84301:intron 15.0%
!!! ATTTTGAATTGAAATTTCAT+TGG - chr2.2:11947365-11947384 MS.gene84301:intron 15.0%
!!! GAAAAAAAAAGCTAATTTTA+TGG - chr2.2:11944715-11944734 MS.gene84301:intron 15.0%
!!! GAAAATATTTTACATGAATA+TGG + chr2.2:11946988-11947007 None:intergenic 15.0%
!!! GAAATTTTGGTTTTTTTTAA+TGG - chr2.2:11943770-11943789 MS.gene84301:intron 15.0%
!!! TATTTGTTAGAATTTTAGAA+AGG - chr2.2:11945649-11945668 MS.gene84301:intron 15.0%
!!! TCAATATTGATATTTTATTG+TGG - chr2.2:11945465-11945484 MS.gene84301:intron 15.0%
!!! TTTCTAATTTCTCTATTTTT+TGG - chr2.2:11948307-11948326 MS.gene84301:CDS 15.0%
!!! TTTTTAATTGAGGTTAATTA+TGG - chr2.2:11943838-11943857 MS.gene84301:CDS 15.0%
!! AAATTGAAAAACTGAATAGT+CGG - chr2.2:11944792-11944811 MS.gene84301:intron 20.0%
!! AATAATATTAAACGACTGTT+TGG - chr2.2:11948199-11948218 MS.gene84301:intron 20.0%
!! ACAAAGATTAAATACATACA+TGG + chr2.2:11945178-11945197 None:intergenic 20.0%
!! AGCTAAGAAATATTGTAATA+TGG + chr2.2:11945981-11946000 None:intergenic 20.0%
!! ATAATATTAAACGACTGTTT+GGG - chr2.2:11948200-11948219 MS.gene84301:intron 20.0%
!! CATAAAAATTTAAAAGGGAA+TGG + chr2.2:11944881-11944900 None:intergenic 20.0%
!! TACACTGAAGAAATTTATAA+AGG + chr2.2:11946798-11946817 None:intergenic 20.0%
!! TATATACATTCACTTATGTT+TGG - chr2.2:11945826-11945845 MS.gene84301:intron 20.0%
!! TATTTAATCTTTGTCATTGT+TGG - chr2.2:11945184-11945203 MS.gene84301:intron 20.0%
!! TCTTTGATATTCAGAAATAT+TGG - chr2.2:11946410-11946429 MS.gene84301:intron 20.0%
!! TGGTTAAAAATTAAAAAACG+AGG + chr2.2:11946968-11946987 None:intergenic 20.0%
!! TTAGAAAATGAAAGGAAAAA+AGG + chr2.2:11946871-11946890 None:intergenic 20.0%
!! TTGATTTAAGTGGTTTAATT+GGG - chr2.2:11943809-11943828 MS.gene84301:CDS 20.0%
!!! ATATTTCTGAATATCAAAGA+TGG + chr2.2:11946410-11946429 None:intergenic 20.0%
!!! ATATTTTATGATCCTTATCA+AGG - chr2.2:11948231-11948250 MS.gene84301:intron 20.0%
!!! ATTGATTTAAGTGGTTTAAT+TGG - chr2.2:11943808-11943827 MS.gene84301:CDS 20.0%
!!! GTATTGTAGATATTGTTTTA+AGG - chr2.2:11945098-11945117 MS.gene84301:CDS 20.0%
!!! GTTGTTGTATAATGTTATTT+TGG - chr2.2:11946269-11946288 MS.gene84301:intron 20.0%
!!! TAGAAAAAGTGTGTAAAAAA+TGG + chr2.2:11947395-11947414 None:intergenic 20.0%
!!! TATTTCATTTTCTGTTAACA+TGG - chr2.2:11944319-11944338 MS.gene84301:intron 20.0%
!!! TATTTCTGAATATCAAAGAT+GGG + chr2.2:11946409-11946428 None:intergenic 20.0%
!!! TCTGATTATTTATTTTTTGC+AGG + chr2.2:11945510-11945529 None:intergenic 20.0%
!!! TGAAAATATACTTTTGTGAT+TGG - chr2.2:11945122-11945141 MS.gene84301:CDS 20.0%
!!! TGTATAATGTTATTTTGGTT+TGG - chr2.2:11946274-11946293 MS.gene84301:intron 20.0%
!!! TGTATAATTGTGGTTTTTAT+AGG + chr2.2:11944633-11944652 None:intergenic 20.0%
!!! TTTTTTCTAAAGACAAAATG+AGG + chr2.2:11946523-11946542 None:intergenic 20.0%
! AAGACAGTTTAGAAAATGAA+AGG + chr2.2:11946879-11946898 None:intergenic 25.0%
! AATATGTAATATTCAGCACA+TGG - chr2.2:11947504-11947523 MS.gene84301:intron 25.0%
! AATGTCAGAAATACTAAAGT+TGG + chr2.2:11947318-11947337 None:intergenic 25.0%
! ATCACAATAAACTGAAATCT+TGG + chr2.2:11943903-11943922 None:intergenic 25.0%
! ATTATATATCGACATGTAAG+TGG + chr2.2:11946223-11946242 None:intergenic 25.0%
! CTGAAGAAATTTATAAAGGA+TGG + chr2.2:11946794-11946813 None:intergenic 25.0%
! GCATTTCTATACAATAGATA+TGG + chr2.2:11945269-11945288 None:intergenic 25.0%
! GTTGTTAAACAGAAGTTATA+CGG + chr2.2:11944240-11944259 None:intergenic 25.0%
! TAAATACATACATGGACATA+GGG + chr2.2:11945170-11945189 None:intergenic 25.0%
! TAATATTATTGTGATCAGAC+AGG + chr2.2:11948189-11948208 None:intergenic 25.0%
! TACAAAATGTTGTCATATAG+TGG + chr2.2:11944152-11944171 None:intergenic 25.0%
! TAGAGAAATTAGAAATTGAG+AGG + chr2.2:11948302-11948321 None:intergenic 25.0%
! TATCAATATTGATGAATGCA+AGG + chr2.2:11945457-11945476 None:intergenic 25.0%
! TATTTAATTAGTGGTGACTT+TGG - chr2.2:11945727-11945746 MS.gene84301:intron 25.0%
! TCATGTTATTCTACTTCTAT+GGG - chr2.2:11946137-11946156 MS.gene84301:intron 25.0%
! TGTTTCACTTATTTGAGAAT+AGG - chr2.2:11945426-11945445 MS.gene84301:intron 25.0%
! TTAAATACATACATGGACAT+AGG + chr2.2:11945171-11945190 None:intergenic 25.0%
! TTAATATATGCTCCTTGATA+AGG + chr2.2:11948246-11948265 None:intergenic 25.0%
! TTGAATTAACAAAGACATAC+TGG - chr2.2:11947052-11947071 MS.gene84301:intron 25.0%
!! AAATATACTTTTGTGATTGG+TGG - chr2.2:11945125-11945144 MS.gene84301:CDS 25.0%
!! TATTTGGAATTAATCCTAGT+CGG + chr2.2:11947265-11947284 None:intergenic 25.0%
!! TGATGTTGAAATCTTTTGAT+GGG + chr2.2:11946555-11946574 None:intergenic 25.0%
!! TTGATGTTGAAATCTTTTGA+TGG + chr2.2:11946556-11946575 None:intergenic 25.0%
!! TTTTCTAAACTGTCTTGAAA+TGG - chr2.2:11946883-11946902 MS.gene84301:intron 25.0%
!! TTTTCTTTTAATATGGGGAA+GGG - chr2.2:11947093-11947112 MS.gene84301:intron 25.0%
!! TTTTTCTTTTAATATGGGGA+AGG - chr2.2:11947092-11947111 MS.gene84301:intron 25.0%
!!! ATGTTATTTTGGTTTGGAAA+TGG - chr2.2:11946280-11946299 MS.gene84301:intron 25.0%
!!! TATAGGATTTGTTTTAGGTT+TGG - chr2.2:11944516-11944535 MS.gene84301:intron 25.0%
!!! TATAGTTTTGAGTTACATTC+TGG - chr2.2:11944396-11944415 MS.gene84301:intron 25.0%
!!! TATATCATAGTGGATTTTGA+TGG - chr2.2:11944603-11944622 MS.gene84301:intron 25.0%
!!! TATTTTTTGCAGGTTTTACA+AGG + chr2.2:11945500-11945519 None:intergenic 25.0%
!!! TGGGAATTTGTTTTTAATTG+AGG - chr2.2:11943828-11943847 MS.gene84301:CDS 25.0%
!!! TGGGTTTTAATTGATTTAAG+TGG - chr2.2:11943799-11943818 MS.gene84301:intron 25.0%
!!! TGTTAAGAGGTTTGAAATTT+TGG - chr2.2:11943757-11943776 MS.gene84301:intron 25.0%
!!! TGTTATTTTGGTTTGGAAAT+GGG - chr2.2:11946281-11946300 MS.gene84301:intron 25.0%
!!! TTTTAAAAATAGGTCATGTC+TGG + chr2.2:11944775-11944794 None:intergenic 25.0%
!!! TTTTTTTTAATGGGGTTGAT+GGG - chr2.2:11943780-11943799 MS.gene84301:intron 25.0%
AAAATGAGGATAGTACAATG+AGG + chr2.2:11946509-11946528 None:intergenic 30.0%
AAACTCATAGAACGTAACAT+GGG + chr2.2:11943602-11943621 None:intergenic 30.0%
AAATGAGGATAGTACAATGA+GGG + chr2.2:11946508-11946527 None:intergenic 30.0%
AAGCATACCTACATATTGAA+AGG + chr2.2:11944853-11944872 None:intergenic 30.0%
AATATTAGCAGCAGATAGAT+AGG - chr2.2:11945607-11945626 MS.gene84301:intron 30.0%
AGAAATCTAAGAATGCAACA+TGG + chr2.2:11946438-11946457 None:intergenic 30.0%
AGAAGTAGTGTTATCAATCA+CGG - chr2.2:11944077-11944096 MS.gene84301:CDS 30.0%
AGTATATCGTGAAACAATAG+TGG - chr2.2:11944178-11944197 MS.gene84301:CDS 30.0%
AGTGAAACAAAATTCTAGTC+TGG + chr2.2:11945415-11945434 None:intergenic 30.0%
AGTTAACTTATTAGTCCATG+AGG + chr2.2:11947229-11947248 None:intergenic 30.0%
ATGTGATAGTAAAGTAGAAC+GGG + chr2.2:11946008-11946027 None:intergenic 30.0%
CTAGTAAGTTATCTGAGAAA+CGG - chr2.2:11945582-11945601 MS.gene84301:intron 30.0%
CTCATGTTATTCTACTTCTA+TGG - chr2.2:11946136-11946155 MS.gene84301:intron 30.0%
CTGTTATCAATAGTGAATTG+CGG + chr2.2:11945033-11945052 None:intergenic 30.0%
GAGATTATCCAAAGCTTAAA+CGG + chr2.2:11946475-11946494 None:intergenic 30.0%
GATGTGATAGTAAAGTAGAA+CGG + chr2.2:11946009-11946028 None:intergenic 30.0%
GGACAATCAATTCATTGATA+TGG - chr2.2:11948339-11948358 MS.gene84301:CDS 30.0%
GGACTAATAAGTTAACTGAT+TGG - chr2.2:11947232-11947251 MS.gene84301:intron 30.0%
GGGGAAATCATTAATTAAAG+TGG - chr2.2:11947114-11947133 MS.gene84301:intron 30.0%
GTGAAACAAAATTCTAGTCT+GGG + chr2.2:11945414-11945433 None:intergenic 30.0%
TAAACTCATAGAACGTAACA+TGG + chr2.2:11943603-11943622 None:intergenic 30.0%
TAAATTTCAGTTTGTCACCT+TGG - chr2.2:11944350-11944369 MS.gene84301:intron 30.0%
TACAATAGCTGAGAGTAATT+TGG + chr2.2:11944209-11944228 None:intergenic 30.0%
TTAGTTTCTCTCTCATTGTT+GGG - chr2.2:11943686-11943705 MS.gene84301:intron 30.0%
TTCTGTTTAACAACACTGAT+AGG - chr2.2:11944246-11944265 MS.gene84301:CDS 30.0%
TTTATAAAGGATGGATCATC+AGG + chr2.2:11946785-11946804 None:intergenic 30.0%
! ATTTGGAATTAATCCTAGTC+GGG + chr2.2:11947264-11947283 None:intergenic 30.0%
! ATTTTACAATTCTCCTCAAG+GGG - chr2.2:11947148-11947167 MS.gene84301:intron 30.0%
! CATTTTACAATTCTCCTCAA+GGG - chr2.2:11947147-11947166 MS.gene84301:intron 30.0%
! CTTATGTTTGGCTAATTTTC+AGG - chr2.2:11945838-11945857 MS.gene84301:intron 30.0%
! TATTGGCTACTGTATAATTG+TGG + chr2.2:11944643-11944662 None:intergenic 30.0%
! TTCATTTTCTGTTAACATGG+TGG - chr2.2:11944322-11944341 MS.gene84301:intron 30.0%
! TTTCTTTTAATATGGGGAAG+GGG - chr2.2:11947094-11947113 MS.gene84301:intron 30.0%
!! TTTGAAGTGTTGTCAAATAG+TGG - chr2.2:11944577-11944596 MS.gene84301:intron 30.0%
!! TTTTCTATGCTAGACTTGTT+TGG - chr2.2:11947408-11947427 MS.gene84301:intron 30.0%
!!! ATTTCACATAGTGGGTTTTT+CGG - chr2.2:11944993-11945012 MS.gene84301:intron 30.0%
!!! GTTTTTTTTAATGGGGTTGA+TGG - chr2.2:11943779-11943798 MS.gene84301:intron 30.0%
!!! TTTCTCTATTTTTTGGCTCT+TGG - chr2.2:11948314-11948333 MS.gene84301:CDS 30.0%
AAATTCTAGTCTGGGTGTAT+AGG + chr2.2:11945406-11945425 None:intergenic 35.0%
AATGAGGATAGTACAATGAG+GGG + chr2.2:11946507-11946526 None:intergenic 35.0%
AATTCTAGTCTGGGTGTATA+GGG + chr2.2:11945405-11945424 None:intergenic 35.0%
ACTTCAAATGCTCATATCAC+CGG - chr2.2:11947630-11947649 MS.gene84301:intron 35.0%
AGAGAGAAAACACACAAAAG+GGG + chr2.2:11943662-11943681 None:intergenic 35.0%
AGAGAGAGAAAACACACAAA+AGG + chr2.2:11943664-11943683 None:intergenic 35.0%
ATACCTACATATTGAAAGGC+TGG + chr2.2:11944849-11944868 None:intergenic 35.0%
ATCATTGCAGTAGAAGTAAG+GGG + chr2.2:11947849-11947868 None:intergenic 35.0%
ATCCAATGAACACACATGTT+TGG + chr2.2:11944037-11944056 None:intergenic 35.0%
ATGAGAATTTCCTCAACGAA+AGG + chr2.2:11943571-11943590 None:intergenic 35.0%
ATGCATTTGACAAATGCATG+GGG - chr2.2:11946041-11946060 MS.gene84301:intron 35.0%
ATTATACAACAACATGCCCA+AGG + chr2.2:11946262-11946281 None:intergenic 35.0%
ATTGTAGCAGAAGACTGATA+AGG + chr2.2:11947660-11947679 None:intergenic 35.0%
CATCATTGCAGTAGAAGTAA+GGG + chr2.2:11947850-11947869 None:intergenic 35.0%
CATGCATTTGACAAATGCAT+GGG - chr2.2:11946040-11946059 MS.gene84301:intron 35.0%
CATTTATTGCAGTGAGTTTG+AGG - chr2.2:11946676-11946695 MS.gene84301:intron 35.0%
CCTTGAGGAGAATTGTAAAA+TGG + chr2.2:11947149-11947168 None:intergenic 35.0%
CGTTTCTCAGATAACTTACT+AGG + chr2.2:11945584-11945603 None:intergenic 35.0%
CTCAAGAAGTGAATGGTATT+TGG - chr2.2:11945291-11945310 MS.gene84301:intron 35.0%
CTGCTACAATTTCTTCTTCT+GGG - chr2.2:11947670-11947689 MS.gene84301:intron 35.0%
CTTATCTTACTTGTGTCCTT+TGG - chr2.2:11946922-11946941 MS.gene84301:intron 35.0%
GAAAAACCCACTATGTGAAA+TGG + chr2.2:11944994-11945013 None:intergenic 35.0%
GACTTATTTCAACTGCTGTT+CGG - chr2.2:11944928-11944947 MS.gene84301:intron 35.0%
GAGAGAGAAAACACACAAAA+GGG + chr2.2:11943663-11943682 None:intergenic 35.0%
GATTCTTAATGCATATGCCA+AGG - chr2.2:11945860-11945879 MS.gene84301:intron 35.0%
GTACTTTAGACGCATTCAAT+GGG - chr2.2:11945533-11945552 MS.gene84301:intron 35.0%
GTGAAAATGAACAAACCCAT+TGG + chr2.2:11943639-11943658 None:intergenic 35.0%
GTTGGCATAAGCAGAAAATT+TGG - chr2.2:11945202-11945221 MS.gene84301:intron 35.0%
TAAAGGTCTCATCTACAAAG+AGG - chr2.2:11945895-11945914 MS.gene84301:intron 35.0%
TACTTTAGACGCATTCAATG+GGG - chr2.2:11945534-11945553 MS.gene84301:intron 35.0%
TACTTTGTCCGTTTAAGCTT+TGG - chr2.2:11946464-11946483 MS.gene84301:intron 35.0%
TCATCATTGCAGTAGAAGTA+AGG + chr2.2:11947851-11947870 None:intergenic 35.0%
TCCCTTGTGTCAATTTAAGT+GGG + chr2.2:11948158-11948177 None:intergenic 35.0%
TCCTGGTACATTATTATTGC+AGG - chr2.2:11947587-11947606 MS.gene84301:intron 35.0%
TCTCTGCTTATTGATGTTAG+AGG - chr2.2:11947027-11947046 MS.gene84301:intron 35.0%
TCTGCTACAATTTCTTCTTC+TGG - chr2.2:11947669-11947688 MS.gene84301:intron 35.0%
TGAGAATTTCCTCAACGAAA+GGG + chr2.2:11943570-11943589 None:intergenic 35.0%
TGGTACATTATTATTGCAGG+CGG - chr2.2:11947590-11947609 MS.gene84301:intron 35.0%
TGTACTTTAGACGCATTCAA+TGG - chr2.2:11945532-11945551 MS.gene84301:intron 35.0%
TGTAGTAGACAGATGAGTTA+TGG - chr2.2:11946592-11946611 MS.gene84301:CDS 35.0%
TTCCAAACATGTGTGTTCAT+TGG - chr2.2:11944032-11944051 MS.gene84301:CDS 35.0%
TTCTAAGCGACTCACATATT+TGG - chr2.2:11947336-11947355 MS.gene84301:intron 35.0%
TTGTCTTTCTGTTGCATGTT+TGG - chr2.2:11946088-11946107 MS.gene84301:intron 35.0%
! CCATTTTACAATTCTCCTCA+AGG - chr2.2:11947146-11947165 MS.gene84301:intron 35.0%
! GTAGATGAGACCTTTAACTT+TGG + chr2.2:11945891-11945910 None:intergenic 35.0%
! GTTAGTTTCTCTCTCATTGT+TGG - chr2.2:11943685-11943704 MS.gene84301:intron 35.0%
! TTCTTTTAATATGGGGAAGG+GGG - chr2.2:11947095-11947114 MS.gene84301:intron 35.0%
! TTTGAGTTACATTCTGGTCT+TGG - chr2.2:11944402-11944421 MS.gene84301:intron 35.0%
! TTTGTAACTCAGTTCTGATC+AGG - chr2.2:11947556-11947575 MS.gene84301:intron 35.0%
!! ACCTTTTCTCTAGAAATAGC+TGG + chr2.2:11948029-11948048 None:intergenic 35.0%
!! AGGTTGCAAATCTTTTTAGC+AGG - chr2.2:11945339-11945358 MS.gene84301:intron 35.0%
!! CAAAAGAAAAGTGTTCGCAA+TGG + chr2.2:11946825-11946844 None:intergenic 35.0%
!! CAGGTATTGTTTTCACGTTT+TGG - chr2.2:11945358-11945377 MS.gene84301:intron 35.0%
!! CCTTTTCTCTAGAAATAGCT+GGG + chr2.2:11948028-11948047 None:intergenic 35.0%
!! GATCTCTCTTTGTTGTTAAG+AGG - chr2.2:11943744-11943763 MS.gene84301:intron 35.0%
!! TTGGAAGTAGTTGATGATGA+TGG + chr2.2:11946749-11946768 None:intergenic 35.0%
!!! TCTATTTTTTGGCTCTTGGT+AGG - chr2.2:11948318-11948337 MS.gene84301:CDS 35.0%
!!! TTTGTTTTAGGTTTGGCTAC+CGG - chr2.2:11944523-11944542 MS.gene84301:intron 35.0%
AAGATCCTCTGATGAGCATA+TGG - chr2.2:11947448-11947467 MS.gene84301:intron 40.0%
AATGCTGCTCAAGAAGTGAA+TGG - chr2.2:11945284-11945303 MS.gene84301:intron 40.0%
ACTATTCGTTAGCAGATGTG+CGG - chr2.2:11944684-11944703 MS.gene84301:intron 40.0%
AGAAATAGCTGGGTTTGGAA+GGG + chr2.2:11948018-11948037 None:intergenic 40.0%
AGAAGACTGATAAGGTTGTC+CGG + chr2.2:11947652-11947671 None:intergenic 40.0%
AGAAGGCTTCACAAGATTTG+TGG + chr2.2:11947814-11947833 None:intergenic 40.0%
AGCCCACTTAAATTGACACA+AGG - chr2.2:11948153-11948172 MS.gene84301:intron 40.0%
AGGGGAGGAACAAAAAAAGA+AGG + chr2.2:11947831-11947850 None:intergenic 40.0%
AGTAGGTATGGATGAAGACA+CGG + chr2.2:11947880-11947899 None:intergenic 40.0%
AGTGGAATAGCAGCTGATAT+TGG + chr2.2:11944667-11944686 None:intergenic 40.0%
ATAGTGGCGCTATATCATAG+TGG - chr2.2:11944593-11944612 MS.gene84301:intron 40.0%
ATCAGGAACATCAGCTACAT+TGG + chr2.2:11946768-11946787 None:intergenic 40.0%
ATGAGGATAGTACAATGAGG+GGG + chr2.2:11946506-11946525 None:intergenic 40.0%
ATTATTATTGCAGGCGGCTA+TGG - chr2.2:11947596-11947615 MS.gene84301:intron 40.0%
ATTTGAACTCCATCCTGTGT+GGG - chr2.2:11947171-11947190 MS.gene84301:intron 40.0%
CACTGCAATAAATGCAAGTG+AGG + chr2.2:11946670-11946689 None:intergenic 40.0%
CCATGCATTTGACAAATGCA+TGG - chr2.2:11946039-11946058 MS.gene84301:intron 40.0%
CCATGCATTTGTCAAATGCA+TGG + chr2.2:11946042-11946061 None:intergenic 40.0%
CGAAACACGAGCAAATATAG+AGG + chr2.2:11944450-11944469 None:intergenic 40.0%
CTCCCTTGTGTCAATTTAAG+TGG + chr2.2:11948159-11948178 None:intergenic 40.0%
CTGCTACCATTTCACATAGT+GGG - chr2.2:11944985-11945004 MS.gene84301:intron 40.0%
GAGAGAAAACACACAAAAGG+GGG + chr2.2:11943661-11943680 None:intergenic 40.0%
GCCCACTTAAATTGACACAA+GGG - chr2.2:11948154-11948173 MS.gene84301:intron 40.0%
GCCTGCAATAATAATGTACC+AGG + chr2.2:11947591-11947610 None:intergenic 40.0%
GGCATAAGCAGAAAATTTGG+TGG - chr2.2:11945205-11945224 MS.gene84301:intron 40.0%
GGGGTTTGAATTGATCTTCA+TGG - chr2.2:11946060-11946079 MS.gene84301:intron 40.0%
GTACAAGTACAACGACCTTA+TGG - chr2.2:11947927-11947946 MS.gene84301:intron 40.0%
GTGATGAATCGTCGTAATAC+TGG - chr2.2:11943918-11943937 MS.gene84301:CDS 40.0%
GTGTTATCAATCACGGATAG+TGG - chr2.2:11944084-11944103 MS.gene84301:CDS 40.0%
TAACAATCCGCTACTCAAGA+GGG - chr2.2:11944118-11944137 MS.gene84301:CDS 40.0%
TAGAAATAGCTGGGTTTGGA+AGG + chr2.2:11948019-11948038 None:intergenic 40.0%
TCATTAAACTCTCACCTCAC+AGG - chr2.2:11945776-11945795 MS.gene84301:intron 40.0%
TCTGCTACCATTTCACATAG+TGG - chr2.2:11944984-11945003 MS.gene84301:intron 40.0%
TGAGAAGCTTAGTGCTTTGT+TGG + chr2.2:11943522-11943541 None:intergenic 40.0%
TGTACTTGTACAGTACCAGT+AGG + chr2.2:11947918-11947937 None:intergenic 40.0%
TTAACAATCCGCTACTCAAG+AGG - chr2.2:11944117-11944136 MS.gene84301:CDS 40.0%
TTATTATTGCAGGCGGCTAT+GGG - chr2.2:11947597-11947616 MS.gene84301:intron 40.0%
! AAATTTGGTGGAAAACCTCC+TGG - chr2.2:11945217-11945236 MS.gene84301:intron 40.0%
! AATTTGGTGGAAAACCTCCT+GGG - chr2.2:11945218-11945237 MS.gene84301:intron 40.0%
! GATGAGACCTTTAACTTTGG+AGG + chr2.2:11945888-11945907 None:intergenic 40.0%
! GGATTTCGAGTATGAAGTTC+AGG - chr2.2:11945241-11945260 MS.gene84301:intron 40.0%
! TAGCAGCTGATATTGGCTAT+TGG + chr2.2:11944660-11944679 None:intergenic 40.0%
! TCTCTAGAAATAGCTGGGTT+TGG + chr2.2:11948023-11948042 None:intergenic 40.0%
! TGTAGCATTGGAGTACCATA+AGG + chr2.2:11947945-11947964 None:intergenic 40.0%
! TTTTGACCTTATACCCACAC+AGG + chr2.2:11947187-11947206 None:intergenic 40.0%
!! CCCAGCTATTTCTAGAGAAA+AGG - chr2.2:11948025-11948044 MS.gene84301:intron 40.0%
!! GATTGTTTTGCAGAGTCGTA+AGG - chr2.2:11943712-11943731 MS.gene84301:intron 40.0%
!! GCAGATAGATAGGCTTTGAA+TGG - chr2.2:11945617-11945636 MS.gene84301:intron 40.0%
AAACCAGCTCTGCCATTCAT+GGG + chr2.2:11945955-11945974 None:intergenic 45.0%
AACCCCCTTGAAAAGGGAAA+CGG + chr2.2:11946386-11946405 None:intergenic 45.0%
ACAGTACCAGTAGGATGAAG+TGG + chr2.2:11947909-11947928 None:intergenic 45.0%
ACGAATTGACCCTTTCGTTG+AGG - chr2.2:11943558-11943577 MS.gene84301:intron 45.0%
ACTACTAAGCTGACACCTCA+TGG - chr2.2:11947211-11947230 MS.gene84301:intron 45.0%
ACTATAGCCCTCTTGAGTAG+CGG + chr2.2:11944128-11944147 None:intergenic 45.0%
ACTGGAAGCAGTACCAACTA+TGG - chr2.2:11946700-11946719 MS.gene84301:intron 45.0%
AGAGATGGTATCTGCAAGGT+TGG + chr2.2:11947729-11947748 None:intergenic 45.0%
AGTACCAACTATGGCAGTCA+TGG - chr2.2:11946709-11946728 MS.gene84301:intron 45.0%
ATGGAGTTCAAATCCCCTTG+AGG + chr2.2:11947164-11947183 None:intergenic 45.0%
ATTGCAGTAGAAGTAAGGGG+AGG + chr2.2:11947846-11947865 None:intergenic 45.0%
CAACGAAAGGGTCAATTCGT+TGG + chr2.2:11943558-11943577 None:intergenic 45.0%
CAGAGTCGTAAGGATGTTGA+AGG - chr2.2:11943722-11943741 MS.gene84301:intron 45.0%
CAGATACTCAGATAGCGTTG+CGG + chr2.2:11944968-11944987 None:intergenic 45.0%
CAGTTTGTCACCTTGGTTGT+TGG - chr2.2:11944357-11944376 MS.gene84301:intron 45.0%
CCATTCATGGGAGAGCAATA+AGG + chr2.2:11945943-11945962 None:intergenic 45.0%
CCTTATTGCTCTCCCATGAA+TGG - chr2.2:11945940-11945959 MS.gene84301:intron 45.0%
CTGATCAGGTCGTTTATTCC+TGG - chr2.2:11947570-11947589 MS.gene84301:intron 45.0%
CTTATGTACCAGGGAACCAA+AGG + chr2.2:11946941-11946960 None:intergenic 45.0%
GAAATAGCTGGGTTTGGAAG+GGG + chr2.2:11948017-11948036 None:intergenic 45.0%
GACTTTGCAACTCACACCTT+GGG - chr2.2:11946243-11946262 MS.gene84301:intron 45.0%
GATTTGAACTCCATCCTGTG+TGG - chr2.2:11947170-11947189 MS.gene84301:intron 45.0%
GCACATCTGCTAACGAATAG+TGG + chr2.2:11944685-11944704 None:intergenic 45.0%
GCTTCACAAGATTTGTGGCT+CGG + chr2.2:11947809-11947828 None:intergenic 45.0%
GGAGTAGATGTTGGAAGAGA+TGG + chr2.2:11947744-11947763 None:intergenic 45.0%
GTAGGTATGGATGAAGACAC+GGG + chr2.2:11947879-11947898 None:intergenic 45.0%
GTGCCAGCCTTTCAATATGT+AGG - chr2.2:11944843-11944862 MS.gene84301:intron 45.0%
GTTTGGAAGGGGAGAAGAAA+CGG + chr2.2:11948006-11948025 None:intergenic 45.0%
TAAACCAGCTCTGCCATTCA+TGG + chr2.2:11945956-11945975 None:intergenic 45.0%
TAATGCTCGCGAATGTGAAG+AGG - chr2.2:11945319-11945338 MS.gene84301:intron 45.0%
TACCAGTAGGATGAAGTGGA+GGG + chr2.2:11947905-11947924 None:intergenic 45.0%
TAGGTATGGATGAAGACACG+GGG + chr2.2:11947878-11947897 None:intergenic 45.0%
TCTTTCCCAACACACTTCCA+CGG - chr2.2:11946169-11946188 MS.gene84301:intron 45.0%
TGACTTTGCAACTCACACCT+TGG - chr2.2:11946242-11946261 MS.gene84301:intron 45.0%
TGAGGATAGTACAATGAGGG+GGG + chr2.2:11946505-11946524 None:intergenic 45.0%
TGAGTGCATGATGCAGAAAG+TGG + chr2.2:11944553-11944572 None:intergenic 45.0%
TGATGCAGAAAGTGGAATGC+CGG + chr2.2:11944545-11944564 None:intergenic 45.0%
TGATTGGAAACTACCCGACT+AGG - chr2.2:11947248-11947267 MS.gene84301:intron 45.0%
TGGAAGAGATGGTATCTGCA+AGG + chr2.2:11947733-11947752 None:intergenic 45.0%
TTGCAGTGAGTTTGAGGAAC+TGG - chr2.2:11946682-11946701 MS.gene84301:intron 45.0%
TTTGGAAGGGGAGAAGAAAC+GGG + chr2.2:11948005-11948024 None:intergenic 45.0%
! ATTTGGTGGAAAACCTCCTG+GGG - chr2.2:11945219-11945238 MS.gene84301:intron 45.0%
! CAAGGTGCCTCCAAAGTTAA+AGG - chr2.2:11945878-11945897 MS.gene84301:intron 45.0%
! GGAAGTGTGTTGGGAAAGAT+AGG + chr2.2:11946168-11946187 None:intergenic 45.0%
! GGTGACTTTGGTTTCTGATC+TGG - chr2.2:11945739-11945758 MS.gene84301:intron 45.0%
! GTGCTTTGTTGGTCGAGATT+TGG + chr2.2:11943511-11943530 None:intergenic 45.0%
!! CACTAGCTTTCCAACAACCA+AGG + chr2.2:11944370-11944389 None:intergenic 45.0%
!! CTTTAACTTTGGAGGCACCT+TGG + chr2.2:11945880-11945899 None:intergenic 45.0%
!! GTTGATGATGATGGCTCAAG+AGG + chr2.2:11946740-11946759 None:intergenic 45.0%
!! TAGCATCGATCTCAGCCAAT+GGG - chr2.2:11943621-11943640 MS.gene84301:intron 45.0%
!! TTAGCATCGATCTCAGCCAA+TGG - chr2.2:11943620-11943639 MS.gene84301:intron 45.0%
!! AATTATAATTATTTAATTAG+TGG - chr2.2:11945718-11945737 MS.gene84301:intron 5.0%
!!! ACAATAATATATTTTTTTTT+TGG - chr2.2:11948118-11948137 MS.gene84301:CDS 5.0%
!!! ATTTTTTTTTCTTTTAATAT+GGG - chr2.2:11947087-11947106 MS.gene84301:intron 5.0%
AAAGGTCCGAGATGCTCTTC+TGG - chr2.2:11948043-11948062 MS.gene84301:intron 50.0%
ACAGGTGTAGCAGCATGAGT+TGG + chr2.2:11947696-11947715 None:intergenic 50.0%
ACCAGTAGGATGAAGTGGAG+GGG + chr2.2:11947904-11947923 None:intergenic 50.0%
ACTCATGCTGCTACACCTGT+TGG - chr2.2:11947696-11947715 MS.gene84301:intron 50.0%
AGATGGGAACCCCCTTGAAA+AGG + chr2.2:11946393-11946412 None:intergenic 50.0%
AGGTATGGATGAAGACACGG+GGG + chr2.2:11947877-11947896 None:intergenic 50.0%
CCAACTATGGCAGTCATGGA+TGG - chr2.2:11946713-11946732 MS.gene84301:intron 50.0%
CCATCCATGACTGCCATAGT+TGG + chr2.2:11946716-11946735 None:intergenic 50.0%
CTCATGCTGCTACACCTGTT+GGG - chr2.2:11947697-11947716 MS.gene84301:intron 50.0%
CTCCATCCTGTGTGGGTATA+AGG - chr2.2:11947178-11947197 MS.gene84301:intron 50.0%
CTTCATACTCGAAATCCCCC+AGG + chr2.2:11945238-11945257 None:intergenic 50.0%
GAAGAAACGGGAGCAAGTGA+AGG + chr2.2:11947993-11948012 None:intergenic 50.0%
GACCTTATACCCACACAGGA+TGG + chr2.2:11947183-11947202 None:intergenic 50.0%
GAGCACCATATGCTCATCAG+AGG + chr2.2:11947456-11947475 None:intergenic 50.0%
GATAGTACAATGAGGGGGGA+GGG + chr2.2:11946501-11946520 None:intergenic 50.0%
GATGGGAACCCCCTTGAAAA+GGG + chr2.2:11946392-11946411 None:intergenic 50.0%
GGTGGAAATGGCTGTAGCAT+TGG + chr2.2:11947957-11947976 None:intergenic 50.0%
GGTGTAAGCGGAGTAGATGT+TGG + chr2.2:11947753-11947772 None:intergenic 50.0%
GTACCAGTAGGATGAAGTGG+AGG + chr2.2:11947906-11947925 None:intergenic 50.0%
TATAGAGACAGAACCGTCCG+TGG + chr2.2:11946189-11946208 None:intergenic 50.0%
TTTGGTGGAAAACCTCCTGG+GGG - chr2.2:11945220-11945239 MS.gene84301:intron 50.0%
! ACTTGTGTCCTTTGGTTCCC+TGG - chr2.2:11946930-11946949 MS.gene84301:intron 50.0%
! CGCACCGTTTCCCTTTTCAA+GGG - chr2.2:11946379-11946398 MS.gene84301:intron 50.0%
! TCGCACCGTTTCCCTTTTCA+AGG - chr2.2:11946378-11946397 MS.gene84301:intron 50.0%
!! CACCGTTTCCCTTTTCAAGG+GGG - chr2.2:11946381-11946400 MS.gene84301:intron 50.0%
!! GCACCGTTTCCCTTTTCAAG+GGG - chr2.2:11946380-11946399 MS.gene84301:intron 50.0%
AAGTGGAGGGGCAGTAGGTA+TGG + chr2.2:11947892-11947911 None:intergenic 55.0%
CAGGCGTACACATGTGCATC+TGG - chr2.2:11945795-11945814 MS.gene84301:intron 55.0%
CATACTCGAAATCCCCCAGG+AGG + chr2.2:11945235-11945254 None:intergenic 55.0%
GAAACGGGAGCAAGTGAAGG+TGG + chr2.2:11947990-11948009 None:intergenic 55.0%
GCATCATGCTGGGGTGTAAG+CGG + chr2.2:11947765-11947784 None:intergenic 55.0%
GGATAGTACAATGAGGGGGG+AGG + chr2.2:11946502-11946521 None:intergenic 55.0%
GGTATCTGCAAGGTTGGCAG+TGG + chr2.2:11947723-11947742 None:intergenic 55.0%
GGTATGGATGAAGACACGGG+GGG + chr2.2:11947876-11947895 None:intergenic 55.0%
GGTGGAGTTGGAGGTGGAAA+TGG + chr2.2:11947969-11947988 None:intergenic 55.0%
TCCCAACACACTTCCACGGA+CGG - chr2.2:11946173-11946192 MS.gene84301:intron 55.0%
TCTCCCATGAATGGCAGAGC+TGG - chr2.2:11945949-11945968 MS.gene84301:intron 55.0%
TGCACATGTGTACGCCTGTG+AGG + chr2.2:11945793-11945812 None:intergenic 55.0%
TGCTCTTCTGGTGCTCGTTC+AGG - chr2.2:11948055-11948074 MS.gene84301:intron 55.0%
TTGCAGGCGGCTATGGGTAT+CGG - chr2.2:11947603-11947622 MS.gene84301:intron 55.0%
! AACCGTCCGTGGAAGTGTGT+TGG + chr2.2:11946178-11946197 None:intergenic 55.0%
! ACCGTCCGTGGAAGTGTGTT+GGG + chr2.2:11946177-11946196 None:intergenic 55.0%
!! ACGAGGAGCGCTTATGTACC+AGG + chr2.2:11946951-11946970 None:intergenic 55.0%
!! AGTGAAGGTGGTGGAGTTGG+AGG + chr2.2:11947978-11947997 None:intergenic 55.0%
!! CGAGCACCAGAAGAGCATCT+CGG + chr2.2:11948052-11948071 None:intergenic 55.0%
!! CGAGGAGCGCTTATGTACCA+GGG + chr2.2:11946950-11946969 None:intergenic 55.0%
!! GACTCAGGAGCATCATGCTG+GGG + chr2.2:11947774-11947793 None:intergenic 55.0%
!! GCAAGTGAAGGTGGTGGAGT+TGG + chr2.2:11947981-11948000 None:intergenic 55.0%
!! GGACTCAGGAGCATCATGCT+GGG + chr2.2:11947775-11947794 None:intergenic 55.0%
!! TGGACTCAGGAGCATCATGC+TGG + chr2.2:11947776-11947795 None:intergenic 55.0%
AAGGTTGGCAGTGGCCCAAC+AGG + chr2.2:11947714-11947733 None:intergenic 60.0%
ACGGGAGCAAGTGAAGGTGG+TGG + chr2.2:11947987-11948006 None:intergenic 60.0%
GCCCCTCCACTTCATCCTAC+TGG - chr2.2:11947900-11947919 MS.gene84301:intron 60.0%
GGATGAAGTGGAGGGGCAGT+AGG + chr2.2:11947897-11947916 None:intergenic 60.0%
TGCAGGCGGCTATGGGTATC+GGG - chr2.2:11947604-11947623 MS.gene84301:intron 60.0%
!! GAAGGTGGTGGAGTTGGAGG+TGG + chr2.2:11947975-11947994 None:intergenic 60.0%
CGGCTGCTGCTGTTGGACTC+AGG + chr2.2:11947789-11947808 None:intergenic 65.0%
! TGTGGCTCGGCTGCTGCTGT+TGG + chr2.2:11947796-11947815 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 11943484 11948396 11943484 ID=MS.gene84301
chr2.2 mRNA 11943484 11948396 11943484 ID=MS.gene84301.t1;Parent=MS.gene84301
chr2.2 exon 11948238 11948396 11948238 ID=MS.gene84301.t1.exon1;Parent=MS.gene84301.t1
chr2.2 CDS 11948238 11948396 11948238 ID=cds.MS.gene84301.t1;Parent=MS.gene84301.t1
chr2.2 exon 11948115 11948155 11948115 ID=MS.gene84301.t1.exon2;Parent=MS.gene84301.t1
chr2.2 CDS 11948115 11948155 11948115 ID=cds.MS.gene84301.t1;Parent=MS.gene84301.t1
chr2.2 exon 11947941 11947990 11947941 ID=MS.gene84301.t1.exon3;Parent=MS.gene84301.t1
chr2.2 CDS 11947941 11947990 11947941 ID=cds.MS.gene84301.t1;Parent=MS.gene84301.t1
chr2.2 exon 11946520 11946664 11946520 ID=MS.gene84301.t1.exon4;Parent=MS.gene84301.t1
chr2.2 CDS 11946520 11946664 11946520 ID=cds.MS.gene84301.t1;Parent=MS.gene84301.t1
chr2.2 exon 11945964 11946020 11945964 ID=MS.gene84301.t1.exon5;Parent=MS.gene84301.t1
chr2.2 CDS 11945964 11946020 11945964 ID=cds.MS.gene84301.t1;Parent=MS.gene84301.t1
chr2.2 exon 11945066 11945192 11945066 ID=MS.gene84301.t1.exon6;Parent=MS.gene84301.t1
chr2.2 CDS 11945066 11945192 11945066 ID=cds.MS.gene84301.t1;Parent=MS.gene84301.t1
chr2.2 exon 11943804 11944271 11943804 ID=MS.gene84301.t1.exon7;Parent=MS.gene84301.t1
chr2.2 CDS 11943804 11944271 11943804 ID=cds.MS.gene84301.t1;Parent=MS.gene84301.t1
chr2.2 exon 11943484 11943540 11943484 ID=MS.gene84301.t1.exon8;Parent=MS.gene84301.t1
chr2.2 CDS 11943484 11943540 11943484 ID=cds.MS.gene84301.t1;Parent=MS.gene84301.t1
Gene Sequence

>MS.gene84301

ATGTCTCAGAACGGAAAATTGATGCCAAATCTCGACCAACAAAGCACTAAGCTTCTCAATCTCACTGTTCTCCAACGAATTGACCCTTTCGTTGAGGAAATTCTCATTACTGCTGCCCATGTTACGTTCTATGAGTTTAGCATCGATCTCAGCCAATGGGTTTGTTCATTTTCACCCCCTTTTGTGTGTTTTCTCTCTCTAGTTAGTTTCTCTCTCATTGTTGGGTTTGATTGTTTTGCAGAGTCGTAAGGATGTTGAAGGATCTCTCTTTGTTGTTAAGAGGTTTGAAATTTTGGTTTTTTTTAATGGGGTTGATGGGTTTTAATTGATTTAAGTGGTTTAATTGGGAATTTGTTTTTAATTGAGGTTAATTATGGTTTTATTGTTTTTTTTTTTTTCATCTCAGAAATACTCAACCAAGATTTCAGTTTATTGTGATGAATCGTCGTAATACTGGTTAGTGAGTCTATCTGCTTTTGTTGATTATAATAATTTTCAATTTTTGTTAAATTTTAAATTTGATTTGGTTATGAGAACTTACATTTTGCTTCCAAACATGTGTGTTCATTGGATTATTTGTAAACTAGTCTGTAAGAAGTAGTGTTATCAATCACGGATAGTGGAAAATGATTTTTAACAATCCGCTACTCAAGAGGGCTATAGTGCCACTATATGACAACATTTTGTACTACATAGTATATCGTGAAACAATAGTGGTTTGTCCAAATTACTCTCAGCTATTGTAGTATTGCGCCGTATAACTTCTGTTTAACAACACTGATAGGAAGTGAGATCAAAACACTGTCGTCAAATCATAAATGCTTGAATCAGATGCTATTTCATTTTCTGTTAACATGGTGGCTGCATAAATTTCAGTTTGTCACCTTGGTTGTTGGAAAGCTAGTGTTTTAGTATAGTTTTGAGTTACATTCTGGTCTTGGAATATTTAAGTATGTAATTATTCCTCTATATTTGCTCGTGTTTCGTAATAATATATTTTACAGTTAGGCAGTATTCTTTTATACTTAAATTTATAGGATTTGTTTTAGGTTTGGCTACCGGCATTCCACTTTCTGCATCATGCACTCAATATTTTGAAGTGTTGTCAAATAGTGGCGCTATATCATAGTGGATTTTGATGGATCACCTATAAAAACCACAATTATACAGTAGCCAATAGCCAATATCAGCTGCTATTCCACTATTCGTTAGCAGATGTGCGGCAATAGATGAAAAAAAAAGCTAATTTTATGGTTTTTAAAAATAATAAACAAAGAGTCTGTGTGTACCAGACATGACCTATTTTTAAAATTGAAAAACTGAATAGTCGGTGACTATTACTCTGATATTTACGATAATGTGCCAGCCTTTCAATATGTAGGTATGCTTAGTCTCCATTCCCTTTTAAATTTTTATGTGACATGCCTTTTTATATTTAATTATTGACTTATTTCAACTGCTGTTCGGCTTCTACTGTTTGTCCGCAACGCTATCTGAGTATCTGCTACCATTTCACATAGTGGGTTTTTCGGCATTTTGCTATTTTCCGCAATTCACTATTGATAACAGTGATATTTAGAGTGTTGCAAATTACTAATAAAAAATTGTACATTTGTATTGTAGATATTGTTTTAAGGATGAAAATATACTTTTGTGATTGGTGGTGATTGAGAATTGATAATGCCCTATGTCCATGTATGTATTTAATCTTTGTCATTGTTGGCATAAGCAGAAAATTTGGTGGAAAACCTCCTGGGGGATTTCGAGTATGAAGTTCAGGTTCCATATCTATTGTATAGAAATGCTGCTCAAGAAGTGAATGGTATTTGGTTCTATAATGCTCGCGAATGTGAAGAGGTTGCAAATCTTTTTAGCAGGTATTGTTTTCACGTTTTGGCAAATAATCTTTTAGATATTTCCCTATACACCCAGACTAGAATTTTGTTTCACTTATTTGAGAATAGGAAAAACCTTGCATTCATCAATATTGATATTTTATTGTGGAAATGATTTCCTTGTAAAACCTGCAAAAAATAAATAATCAGAATTGTACTTTAGACGCATTCAATGGGGAAAAAAAGTTTATTACAACTATTTCCTAGTAAGTTATCTGAGAAACGGCGAATATTAGCAGCAGATAGATAGGCTTTGAATGGTGTGCGTTATATTTGTTAGAATTTTAGAAAGGCATGCAAAAGTACAATTTTTTCTTTTAGGGCTTAGAAAAGTATATAAATTATAATTATTTAATTAGTGGTGACTTTGGTTTCTGATCTGGAATTCATAAAATCATCATTAAACTCTCACCTCACAGGCGTACACATGTGCATCTGGTCATCATATATATACATTCACTTATGTTTGGCTAATTTTCAGGATTCTTAATGCATATGCCAAGGTGCCTCCAAAGTTAAAGGTCTCATCTACAAAGAGGTAATTATATGTTTCTAGCAACACCTTATTGCTCTCCCATGAATGGCAGAGCTGGTTTAATCCATATTACAATATTTCTTAGCTCTATCCCGTTCTACTTTACTATCACATCATATTCATATCCATGCATTTGACAAATGCATGGGGTTTGAATTGATCTTCATGGACGACTTGTCTTTCTGTTGCATGTTTGGTTTGCAAGTTCTGTCTGATCTCTATCTCATGTTATTCTACTTCTATGGGTCATACCTATCTTTCCCAACACACTTCCACGGACGGTTCTGTCTCTATAAGTGCAGATCACCACTTACATGTCGATATATAATGACTTTGCAACTCACACCTTGGGCATGTTGTTGTATAATGTTATTTTGGTTTGGAAATGGGATACGTTCTTTAATTTGTCTATCTTTGTGTCATTTGTATACATTTTAGAAATTGCTATTAAACATTTTAGAAATTCGCACCGTTTCCCTTTTCAAGGGGGTTCCCATCTTTGATATTCAGAAATATTGGCACCATGTTGCATTCTTAGATTTCTTCTTTGTACTTTGTCCGTTTAAGCTTTGGATAATCTCTTACCCTCCCCCCTCATTGTACTATCCTCATTTTGTCTTTAGAAAAAAAATAGTATTCCCATCAAAAGATTTCAACATCAACAGTAAGTGATTATTCTGTAGTAGACAGATGAGTTATGGATGCATACATTGTCATATATTTCTGTACTCTCTATACTTCATATTAATGAAGCCTCACTTGCATTTATTGCAGTGAGTTTGAGGAACTGGAAGCAGTACCAACTATGGCAGTCATGGATGGTCCTCTTGAGCCATCATCATCAACTACTTCCAATGTAGCTGATGTTCCTGATGATCCATCCTTTATAAATTTCTTCAGTGTATGTACCATTGCGAACACTTTTCTTTTGTTTCAAATAATTTGTTACGACGACCTTTTTTCCTTTCATTTTCTAAACTGTCTTGAAATGGTTTTATATCTTGCATGCTTATCTTACTTGTGTCCTTTGGTTCCCTGGTACATAAGCGCTCCTCGTTTTTTAATTTTTAACCATATTCATGTAAAATATTTTCGGCTATGTCACAATAGTTTTCTCTGCTTATTGATGTTAGAGGAGTTGAATTAACAAAGACATACTGGATAAGTTAATTGATTTTTTTTTCTTTTAATATGGGGAAGGGGGAAATCATTAATTAAAGTGGCATTAACGACCATTTTACAATTCTCCTCAAGGGGATTTGAACTCCATCCTGTGTGGGTATAAGGTCAAAATCTTACTACTAAGCTGACACCTCATGGACTAATAAGTTAACTGATTGGAAACTACCCGACTAGGATTAATTCCAAATACAATTTTTAATTCTTCTTTCAATGCATGTACCAACTTTAGTATTTCTGACATTCTAAGCGACTCACATATTTGGATTTATATTTTGAATTGAAATTTCATTGGTTGTCCATTTTTTACACACTTTTTCTATGCTAGACTTGTTTGGACAGATTTCAAAACTATAAGATCCTCTGATGAGCATATGGTGCTCCACTTATGATCATTTTCATTTGTATGTAAATATGTAATATTCAGCACATGGATATTTTATAAATTTGTTCTTGTTAAACATTTGTAACTCAGTTCTGATCAGGTCGTTTATTCCTGGTACATTATTATTGCAGGCGGCTATGGGTATCGGGAATACTTCAAATGCTCATATCACCGGACAACCTTATCAGTCTTCTGCTACAATTTCTTCTTCTGGGCCAACTCATGCTGCTACACCTGTTGGGCCACTGCCAACCTTGCAGATACCATCTCTTCCAACATCTACTCCGCTTACACCCCAGCATGATGCTCCTGAGTCCAACAGCAGCAGCCGAGCCACAAATCTTGTGAAGCCTTCTTTTTTTGTTCCTCCCCTTACTTCTACTGCAATGATGATTCCCCCCGTGTCTTCATCCATACCTACTGCCCCTCCACTTCATCCTACTGGTACTGTACAAGTACAACGACCTTATGGTACTCCAATGCTACAGCCATTTCCACCTCCAACTCCACCACCTTCACTTGCTCCCGTTTCTTCTCCCCTTCCAAACCCAGCTATTTCTAGAGAAAAGGTCCGAGATGCTCTTCTGGTGCTCGTTCAGGTTAGTTTACTTTCTTCGTACTTGCTTATGATATTCTGATCACAATAATATATTTTTTTTTTGGAGAAGCTAAATTAGCCCACTTAAATTGACACAAGGGAGAATCGAACCTGTCTGATCACAATAATATTAAACGACTGTTTGGGAGCTAGTAATATTTTATGATCCTTATCAAGGAGCATATATTAATTCCATTATTTATTTATTTATTTATTTGTTTTTCCTCTCAATTTCTAATTTCTCTATTTTTTGGCTCTTGGTAGGACAATCAATTCATTGATATGGTTTATAATGCGCTGCTGAATGCTCATCAATCATGA
Protein sequence

>MS.gene84301.t1

MSQNGKLMPNLDQQSTKLLNLTVLQRIDPFVEEILITAAHVTFYEFSIDLSQWSRKDVEGSLFVVKRNTQPRFQFIVMNRRNTENLVENLLGDFEYEVQVPYLLYRNAAQEVNGIWFYNARECEEVANLFSRILNAYAKVPPKLKVSSTKSEFEELEAVPTMAVMDGPLEPSSSTTSNVADVPDDPSFINFFSAAMGIGNTSNAHITGQPYQSSATISSSGPTHAATPVGPLPTLQIPSLPTSTPLTPQHDAPESNSSSRATNLVKPSFFVPPLTSTAMMIPPVSSSIPTAPPLHPTGTVQVQRPYGTPMLQPFPPPTPPPSLAPVSSPLPNPAISREKVRDALLVLVQDNQFIDMVYNALLNAHQS