AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene84319

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84319.t1 MTR_2g086580 96.306 379 14 0 1 379 73 451 0.0 761
MS.gene84319.t1 MTR_7g104900 56.888 392 145 6 1 379 97 477 1.43e-145 421
MS.gene84319.t1 MTR_4g052850 74.157 267 67 1 1 267 92 356 5.99e-143 410
MS.gene84319.t1 MTR_8g026680 64.026 303 92 3 1 303 109 394 6.50e-129 379
MS.gene84319.t1 MTR_1g089500 74.026 231 60 0 1 231 67 297 7.01e-124 366
MS.gene84319.t1 MTR_7g107560 71.429 231 66 0 1 231 60 290 1.23e-111 333
MS.gene84319.t1 MTR_5g064420 69.364 173 43 2 21 193 33 195 2.84e-77 238
MS.gene84319.t1 MTR_7g081615 67.500 160 50 1 40 199 14 171 4.47e-71 220
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84319.t1 AT5G22400 60.422 379 123 5 1 379 115 466 7.18e-145 419
MS.gene84319.t1 AT3G11490 68.978 274 81 1 1 270 91 364 1.86e-134 391
MS.gene84319.t1 AT1G08340 72.727 231 63 0 1 231 1 231 3.44e-126 367
MS.gene84319.t1 AT2G46710 73.593 231 61 0 1 231 103 333 2.97e-123 363
MS.gene84319.t1 AT4G03100 70.638 235 69 0 1 235 78 312 1.22e-120 356

Find 65 sgRNAs with CRISPR-Local

Find 136 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTGAAAATGCTTATATTA+AGG 0.202458 2.2:-12065308 MS.gene84319:CDS
TGATAGGTTCAATGGTTTCT+TGG 0.248536 2.2:-12067586 MS.gene84319:CDS
CCTAGCACTAGGAGGCCTTC+TGG 0.256375 2.2:+12067533 None:intergenic
AAAAGTGTCGGTCGAGAAAA+AGG 0.290122 2.2:-12064896 MS.gene84319:CDS
GGAACTTCCTAGCGGCGTTC+TGG 0.311234 2.2:-12065710 MS.gene84319:CDS
GATAGGTTCAATGGTTTCTT+GGG 0.329734 2.2:-12067585 MS.gene84319:CDS
TTGTCTGGCAGGACTAATTA+AGG 0.347959 2.2:-12066510 MS.gene84319:intron
GAAGGTTCTAAATTCAATCT+TGG 0.352625 2.2:+12065246 None:intergenic
CAATACAGTCTTCCTCAGTT+TGG 0.364130 2.2:+12065656 None:intergenic
GTATGTTCAAGAAGGGTTGC+AGG 0.366227 2.2:-12066738 MS.gene84319:intron
CTGAAGCTGCACTCTTGGAT+TGG 0.367227 2.2:-12065609 MS.gene84319:CDS
TGCATTAACAGAAGAATTGT+TGG 0.374854 2.2:+12066770 None:intergenic
TCCTCAACTGAAAGAGAATC+TGG 0.397060 2.2:-12065084 MS.gene84319:CDS
AGTAGTTCAAATGCTAGAAA+AGG 0.402969 2.2:-12064958 MS.gene84319:CDS
TCATGCTGAAGCTGCACTCT+TGG 0.410731 2.2:-12065614 MS.gene84319:CDS
GAACAGACCTGAGTCATGTT+TGG 0.422768 2.2:+12065505 None:intergenic
CTAGCACTAGGAGGCCTTCT+GGG 0.423002 2.2:+12067534 None:intergenic
CAATGTACATCAATGTCTTC+AGG 0.428431 2.2:+12066530 None:intergenic
TACATCAGCCATTAGATTGA+TGG 0.431052 2.2:+12065585 None:intergenic
GGAGGCCTTCTGGGAAAATC+AGG 0.439195 2.2:+12067543 None:intergenic
GTTAGGAATCAATTGAACTT+AGG 0.440142 2.2:-12066560 MS.gene84319:CDS
GGATTGGGCCATCAATCTAA+TGG 0.467322 2.2:-12065593 MS.gene84319:CDS
TGAAGCTGCACTCTTGGATT+GGG 0.473582 2.2:-12065608 MS.gene84319:CDS
AAATCAGGTTCAAACTCATC+AGG 0.480208 2.2:+12067558 None:intergenic
ATAGTCAAGAGGAACATGTT+AGG 0.482181 2.2:-12066577 MS.gene84319:CDS
GCGTACATCAATGCAGTGAA+TGG 0.486250 2.2:+12065348 None:intergenic
GCCAGATTCTCTTTCAGTTG+AGG 0.491573 2.2:+12065083 None:intergenic
GCGACATGGCGAACGTTAGT+TGG 0.492707 2.2:+12067621 None:intergenic
GGACAACAACCTGTGATCAA+TGG 0.493660 2.2:-12064919 MS.gene84319:CDS
GAATCAATTGAACTTAGGAT+TGG 0.495739 2.2:-12066555 MS.gene84319:CDS
GTAGTTCAAATGCTAGAAAA+GGG 0.502633 2.2:-12064957 MS.gene84319:CDS
GATCAGACCGAGTCGAAGCT+TGG 0.514597 2.2:-12064843 MS.gene84319:CDS
GGCATTTGTATGTTCAAGAA+GGG 0.517493 2.2:-12066745 MS.gene84319:CDS
AGACATTGATGTACATTGTC+TGG 0.518937 2.2:-12066525 MS.gene84319:CDS
AGGCATTTGTATGTTCAAGA+AGG 0.519056 2.2:-12066746 MS.gene84319:CDS
TTCACCGCCAAGCTTCGACT+CGG 0.526197 2.2:+12064836 None:intergenic
GTGGGGAAGAATAACAAGTC+TGG 0.528840 2.2:-12064988 MS.gene84319:CDS
CAAAAGTAACGTGTGCGACA+TGG 0.530420 2.2:+12067607 None:intergenic
TTTGTACATGTATAGGTGGA+AGG 0.531414 2.2:-12066623 MS.gene84319:intron
AAGGACGCTACGAGAAAGAA+AGG 0.533822 2.2:-12065289 MS.gene84319:CDS
CAATTCTTCTGTTAATGCAA+AGG 0.543052 2.2:-12066766 MS.gene84319:CDS
ATTGATGTACATTGTCTGGC+AGG 0.558765 2.2:-12066521 MS.gene84319:CDS
TTGTACATGTATAGGTGGAA+GGG 0.562108 2.2:-12066622 MS.gene84319:intron
CCAGAAGGCCTCCTAGTGCT+AGG 0.566429 2.2:-12067533 MS.gene84319:intron
GAAATGACTCGAAAAGTCTA+CGG 0.568493 2.2:+12065208 None:intergenic
CGGTGTACATTCTCATCAGA+AGG 0.569866 2.2:+12065228 None:intergenic
AATGAGTCCAGAACGCCGCT+AGG 0.582282 2.2:+12065703 None:intergenic
TGAGAATCTAATTTGCAATG+AGG 0.590817 2.2:-12065043 MS.gene84319:CDS
AAGAGTGCAGCTTCAGCATG+AGG 0.593298 2.2:+12065616 None:intergenic
CAGTTATCTTATGATTCAAG+AGG 0.593577 2.2:-12066803 MS.gene84319:CDS
TAATGCAGACAATAGTCAAG+AGG 0.607790 2.2:-12066588 MS.gene84319:CDS
ACATGGCGAACGTTAGTTGG+AGG 0.608049 2.2:+12067624 None:intergenic
GAACGCGCGCAACATTGCCA+TGG 0.618131 2.2:-12065536 MS.gene84319:CDS
TATTACATATACCTAGCACT+AGG 0.623513 2.2:+12067522 None:intergenic
TGCAGCAGCAGACAATGAAG+AGG 0.625545 2.2:-12065172 MS.gene84319:CDS
TGTGATCAATGGAAAAGTGT+CGG 0.637614 2.2:-12064908 MS.gene84319:CDS
AGTTATCTTATGATTCAAGA+GGG 0.643572 2.2:-12066802 MS.gene84319:CDS
TACATATACCTAGCACTAGG+AGG 0.644832 2.2:+12067525 None:intergenic
TTTCCTCCGAAAAGAAACGT+GGG 0.647448 2.2:-12065006 MS.gene84319:CDS
AAGACTGTATTGAACTAGTG+AGG 0.648835 2.2:-12065645 MS.gene84319:CDS
CAGACCGAGTCGAAGCTTGG+CGG 0.664957 2.2:-12064840 MS.gene84319:CDS
GTTTCCTCCGAAAAGAAACG+TGG 0.672738 2.2:-12065007 MS.gene84319:CDS
TTCCTCCGAAAAGAAACGTG+GGG 0.693572 2.2:-12065005 MS.gene84319:CDS
AGTAATGCAATGCCAAACTG+AGG 0.695720 2.2:-12065668 MS.gene84319:CDS
TGGTTTCGGGAACTTCCTAG+CGG 0.730728 2.2:-12065718 MS.gene84319:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTACGTTTTTAAAA+AGG - chr2.2:12066152-12066171 MS.gene84319:intron 10.0%
!! ATCATAAAACTTTACATATA+GGG + chr2.2:12066552-12066571 None:intergenic 15.0%
!!! TATAAAAGCATTAATGAAAA+AGG + chr2.2:12066686-12066705 None:intergenic 15.0%
!! AAAATCAAACAAAAAAAGAG+AGG + chr2.2:12065607-12065626 None:intergenic 20.0%
!! ACCATTTATATGTCATAATT+TGG - chr2.2:12065136-12065155 MS.gene84319:CDS 20.0%
!! CATAATTTGGATTGAATTTA+GGG - chr2.2:12065149-12065168 MS.gene84319:CDS 20.0%
!! GATCATAAAACTTTACATAT+AGG + chr2.2:12066553-12066572 None:intergenic 20.0%
!! TCATAATTTGGATTGAATAA+GGG - chr2.2:12065372-12065391 MS.gene84319:intron 20.0%
!! TCATAATTTGGATTGAATTT+AGG - chr2.2:12065148-12065167 MS.gene84319:CDS 20.0%
!! TCCAAATTATGACATATAAA+TGG + chr2.2:12065140-12065159 None:intergenic 20.0%
!! TCTTGAAAATGCTTATATTA+AGG - chr2.2:12067165-12067184 MS.gene84319:intron 20.0%
!! TTATGACATATAAATGGTAA+AGG + chr2.2:12065134-12065153 None:intergenic 20.0%
!! TTATTAACAAAAATAAGCGA+TGG + chr2.2:12065066-12065085 None:intergenic 20.0%
!!! AATATTTAGGATGGTAAATT+GGG - chr2.2:12066387-12066406 MS.gene84319:intron 20.0%
!!! TCAAAAACTATCTAAGATTT+TGG - chr2.2:12065462-12065481 MS.gene84319:intron 20.0%
! AAACTTTACATATAGGGTAA+AGG + chr2.2:12066546-12066565 None:intergenic 25.0%
! ACTAGTTCAATTATATTGCT+TGG - chr2.2:12065814-12065833 MS.gene84319:intron 25.0%
! AGTAGTGTGTATATAATTCA+TGG - chr2.2:12065285-12065304 MS.gene84319:CDS 25.0%
! AGTTATCTTATGATTCAAGA+GGG - chr2.2:12065671-12065690 MS.gene84319:CDS 25.0%
! AGTTGAATTTGTACATGTAT+AGG - chr2.2:12065843-12065862 MS.gene84319:intron 25.0%
! ATATATCCTGTAGTTATGAA+TGG - chr2.2:12066416-12066435 MS.gene84319:intron 25.0%
! GAGGAAAAAGTAAAACAAAA+AGG + chr2.2:12065588-12065607 None:intergenic 25.0%
! GCTAAACTATTATTAGTTCA+TGG - chr2.2:12067028-12067047 MS.gene84319:intron 25.0%
! GTCATAATTTGGATTGAATA+AGG - chr2.2:12065371-12065390 MS.gene84319:intron 25.0%
! TACATAACTAAATGAACGAT+TGG - chr2.2:12065178-12065197 MS.gene84319:CDS 25.0%
! TTTGTCTCATTTATTAGACT+TGG + chr2.2:12066302-12066321 None:intergenic 25.0%
!! CAATATTTAGGATGGTAAAT+TGG - chr2.2:12066386-12066405 MS.gene84319:intron 25.0%
!! TGATATTCTTGTACTTTTCA+AGG - chr2.2:12066730-12066749 MS.gene84319:intron 25.0%
!! TTCAAGTTAATCACAGTATT+TGG - chr2.2:12067078-12067097 MS.gene84319:intron 25.0%
!! TTTTCAAAGATGAAAATGCA+TGG + chr2.2:12066639-12066658 None:intergenic 25.0%
!!! ATGTTGAATAGTTTTGCTAT+AGG - chr2.2:12066108-12066127 MS.gene84319:intron 25.0%
AAAGGAGTTGAAGAAGTTAA+AGG + chr2.2:12066528-12066547 None:intergenic 30.0%
AAATGTCCATTCATAACTAC+AGG + chr2.2:12066425-12066444 None:intergenic 30.0%
AGTAGTTCAAATGCTAGAAA+AGG - chr2.2:12067515-12067534 MS.gene84319:intron 30.0%
ATGATTCGTTCGCTAATTAA+AGG + chr2.2:12065545-12065564 None:intergenic 30.0%
CAATTCTTCTGTTAATGCAA+AGG - chr2.2:12065707-12065726 MS.gene84319:CDS 30.0%
CAGTTATCTTATGATTCAAG+AGG - chr2.2:12065670-12065689 MS.gene84319:CDS 30.0%
GAATCAATTGAACTTAGGAT+TGG - chr2.2:12065918-12065937 MS.gene84319:intron 30.0%
GCGATGGAAATAAATAAAAC+TGG + chr2.2:12065050-12065069 None:intergenic 30.0%
GTAGTTCAAATGCTAGAAAA+GGG - chr2.2:12067516-12067535 MS.gene84319:intron 30.0%
GTGACAATGCATTACTAAAT+TGG - chr2.2:12065394-12065413 MS.gene84319:intron 30.0%
GTTAGGAATCAATTGAACTT+AGG - chr2.2:12065913-12065932 MS.gene84319:intron 30.0%
TATTACATATACCTAGCACT+AGG + chr2.2:12064954-12064973 None:intergenic 30.0%
TCTGATAGTACTTATACCTT+AGG - chr2.2:12067055-12067074 MS.gene84319:intron 30.0%
TGAATTTGTACATGTATAGG+TGG - chr2.2:12065846-12065865 MS.gene84319:intron 30.0%
TGATTCATCATGTAACTGAT+TGG - chr2.2:12066242-12066261 MS.gene84319:intron 30.0%
TGCATTAACAGAAGAATTGT+TGG + chr2.2:12065706-12065725 None:intergenic 30.0%
TTACCATCCTAAATATTGCA+TGG + chr2.2:12066384-12066403 None:intergenic 30.0%
! AACTATGCTAAGAAAAGCAT+AGG - chr2.2:12065500-12065519 MS.gene84319:intron 30.0%
! TGAGAATCTAATTTGCAATG+AGG - chr2.2:12067430-12067449 MS.gene84319:intron 30.0%
!! ACATCATTTTCAAGACACAT+TGG - chr2.2:12066326-12066345 MS.gene84319:intron 30.0%
!! GAAGGTTCTAAATTCAATCT+TGG + chr2.2:12067230-12067249 None:intergenic 30.0%
!!! GTTACTTTTGATAGGTTCAA+TGG - chr2.2:12064879-12064898 MS.gene84319:CDS 30.0%
AAATCAGGTTCAAACTCATC+AGG + chr2.2:12064918-12064937 None:intergenic 35.0%
AAGACTGTATTGAACTAGTG+AGG - chr2.2:12066828-12066847 MS.gene84319:CDS 35.0%
ACACCATGCAATATTTAGGA+TGG - chr2.2:12066378-12066397 MS.gene84319:intron 35.0%
AGACATTGATGTACATTGTC+TGG - chr2.2:12065948-12065967 MS.gene84319:intron 35.0%
AGCTACACCATGCAATATTT+AGG - chr2.2:12066374-12066393 MS.gene84319:intron 35.0%
AGGCATTTGTATGTTCAAGA+AGG - chr2.2:12065727-12065746 MS.gene84319:intron 35.0%
ATAGTCAAGAGGAACATGTT+AGG - chr2.2:12065896-12065915 MS.gene84319:intron 35.0%
ATTCGTTCGCTAATTAAAGG+CGG + chr2.2:12065542-12065561 None:intergenic 35.0%
CAATGTACATCAATGTCTTC+AGG + chr2.2:12065946-12065965 None:intergenic 35.0%
GAAATGACTCGAAAAGTCTA+CGG + chr2.2:12067268-12067287 None:intergenic 35.0%
GATAGGTTCAATGGTTTCTT+GGG - chr2.2:12064888-12064907 MS.gene84319:CDS 35.0%
GCATTACTAAATTGGATGCT+TGG - chr2.2:12065402-12065421 MS.gene84319:intron 35.0%
GGACTAATTAAGGTATGACA+TGG - chr2.2:12065973-12065992 MS.gene84319:intron 35.0%
GGCATTTGTATGTTCAAGAA+GGG - chr2.2:12065728-12065747 MS.gene84319:intron 35.0%
GTTTCGTGAATTGATCTGAA+TGG - chr2.2:12066049-12066068 MS.gene84319:intron 35.0%
TAATGCAGACAATAGTCAAG+AGG - chr2.2:12065885-12065904 MS.gene84319:intron 35.0%
TACATCAGCCATTAGATTGA+TGG + chr2.2:12066891-12066910 None:intergenic 35.0%
TCATGTAACTGATTGGAGAA+AGG - chr2.2:12066249-12066268 MS.gene84319:intron 35.0%
TGATAGGTTCAATGGTTTCT+TGG - chr2.2:12064887-12064906 MS.gene84319:CDS 35.0%
TTGTACATGTATAGGTGGAA+GGG - chr2.2:12065851-12065870 MS.gene84319:intron 35.0%
TTTGTACATGTATAGGTGGA+AGG - chr2.2:12065850-12065869 MS.gene84319:intron 35.0%
! ACATGTAGTGCAACTGTTTT+TGG - chr2.2:12065628-12065647 MS.gene84319:CDS 35.0%
! CTGTGATTAACTTGAACCTA+AGG + chr2.2:12067074-12067093 None:intergenic 35.0%
! TGTGATCAATGGAAAAGTGT+CGG - chr2.2:12067565-12067584 MS.gene84319:CDS 35.0%
! TTGTTGTCCTCTTGTCTTTT+TGG + chr2.2:12067543-12067562 None:intergenic 35.0%
!! TACTTTTCAAGGCTTGGTTT+CGG - chr2.2:12066741-12066760 MS.gene84319:CDS 35.0%
!! TTCTTGTACTTTTCAAGGCT+TGG - chr2.2:12066735-12066754 MS.gene84319:intron 35.0%
!!! GGAGTTTTTTTCGAGTGATT+CGG + chr2.2:12067372-12067391 None:intergenic 35.0%
!!! GTTAGTTTTTTCTCCTTCAC+CGG - chr2.2:12066487-12066506 MS.gene84319:intron 35.0%
AAAGGGTCCAAAAAGACAAG+AGG - chr2.2:12067533-12067552 MS.gene84319:intron 40.0%
AGTAATGCAATGCCAAACTG+AGG - chr2.2:12066805-12066824 MS.gene84319:CDS 40.0%
ATTGATGTACATTGTCTGGC+AGG - chr2.2:12065952-12065971 MS.gene84319:intron 40.0%
CAATACAGTCTTCCTCAGTT+TGG + chr2.2:12066820-12066839 None:intergenic 40.0%
TACATATACCTAGCACTAGG+AGG + chr2.2:12064951-12064970 None:intergenic 40.0%
TCCTCAACTGAAAGAGAATC+TGG - chr2.2:12067389-12067408 MS.gene84319:intron 40.0%
TTGTCTGGCAGGACTAATTA+AGG - chr2.2:12065963-12065982 MS.gene84319:intron 40.0%
TTTCCTCCGAAAAGAAACGT+GGG - chr2.2:12067467-12067486 MS.gene84319:intron 40.0%
! GACACTTTTCCATTGATCAC+AGG + chr2.2:12067566-12067585 None:intergenic 40.0%
! TTCTTCCCCACGTTTCTTTT+CGG + chr2.2:12067476-12067495 None:intergenic 40.0%
! TTGAACCTGATTTTCCCAGA+AGG - chr2.2:12064925-12064944 MS.gene84319:CDS 40.0%
!! AAAAGTGTCGGTCGAGAAAA+AGG - chr2.2:12067577-12067596 MS.gene84319:CDS 40.0%
!! AAAGTGTCGGTCGAGAAAAA+GGG - chr2.2:12067578-12067597 MS.gene84319:CDS 40.0%
!! ACTTTTCAAGGCTTGGTTTC+GGG - chr2.2:12066742-12066761 MS.gene84319:CDS 40.0%
!! TTGGCTTTTCTGATTGCAGA+TGG - chr2.2:12067097-12067116 MS.gene84319:intron 40.0%
!!! TCGCACACGTTACTTTTGAT+AGG - chr2.2:12064871-12064890 MS.gene84319:CDS 40.0%
AAGGACCAGTGTTCAAACTC+CGG + chr2.2:12066509-12066528 None:intergenic 45.0%
AAGGACGCTACGAGAAAGAA+AGG - chr2.2:12067184-12067203 MS.gene84319:intron 45.0%
CAAAAGTAACGTGTGCGACA+TGG + chr2.2:12064869-12064888 None:intergenic 45.0%
CATGTTTGGCGCAAAAACCA+TGG + chr2.2:12066957-12066976 None:intergenic 45.0%
CGGTGTACATTCTCATCAGA+AGG + chr2.2:12067248-12067267 None:intergenic 45.0%
GAACAGACCTGAGTCATGTT+TGG + chr2.2:12066971-12066990 None:intergenic 45.0%
GCCAGATTCTCTTTCAGTTG+AGG + chr2.2:12067393-12067412 None:intergenic 45.0%
GCGTACATCAATGCAGTGAA+TGG + chr2.2:12067128-12067147 None:intergenic 45.0%
GGACAACAACCTGTGATCAA+TGG - chr2.2:12067554-12067573 MS.gene84319:CDS 45.0%
GGATTGGGCCATCAATCTAA+TGG - chr2.2:12066880-12066899 MS.gene84319:intron 45.0%
GTATGTTCAAGAAGGGTTGC+AGG - chr2.2:12065735-12065754 MS.gene84319:intron 45.0%
GTGGGGAAGAATAACAAGTC+TGG - chr2.2:12067485-12067504 MS.gene84319:intron 45.0%
GTTTCCTCCGAAAAGAAACG+TGG - chr2.2:12067466-12067485 MS.gene84319:intron 45.0%
TGAAGCTGCACTCTTGGATT+GGG - chr2.2:12066865-12066884 MS.gene84319:intron 45.0%
TTCCTCCGAAAAGAAACGTG+GGG - chr2.2:12067468-12067487 MS.gene84319:intron 45.0%
! TTTTGCGCCAAACATGACTC+AGG - chr2.2:12066961-12066980 MS.gene84319:intron 45.0%
!! AAAATAAAAAAAAGTTTAAT+TGG + chr2.2:12066993-12067012 None:intergenic 5.0%
!!! AATTAAACTTTTTTTTATTT+TGG - chr2.2:12066992-12067011 MS.gene84319:intron 5.0%
ACATGGCGAACGTTAGTTGG+AGG + chr2.2:12064852-12064871 None:intergenic 50.0%
CAGTGTTCAAACTCCGGTGA+AGG + chr2.2:12066503-12066522 None:intergenic 50.0%
CGGTCGAGAAAAAGGGAATG+AGG - chr2.2:12067585-12067604 MS.gene84319:CDS 50.0%
CTGAAGCTGCACTCTTGGAT+TGG - chr2.2:12066864-12066883 MS.gene84319:intron 50.0%
CTTCACCGGAGTTTGAACAC+TGG - chr2.2:12066501-12066520 MS.gene84319:intron 50.0%
TCATGCTGAAGCTGCACTCT+TGG - chr2.2:12066859-12066878 MS.gene84319:intron 50.0%
TGCAGCAGCAGACAATGAAG+AGG - chr2.2:12067301-12067320 MS.gene84319:intron 50.0%
TGGTTTCGGGAACTTCCTAG+CGG - chr2.2:12066755-12066774 MS.gene84319:CDS 50.0%
! AAGAGTGCAGCTTCAGCATG+AGG + chr2.2:12066860-12066879 None:intergenic 50.0%
! TTCCCCACGTTTCTTTTCGG+AGG + chr2.2:12067473-12067492 None:intergenic 50.0%
AATGAGTCCAGAACGCCGCT+AGG + chr2.2:12066773-12066792 None:intergenic 55.0%
CTAGCACTAGGAGGCCTTCT+GGG + chr2.2:12064942-12064961 None:intergenic 55.0%
GATCAGACCGAGTCGAAGCT+TGG - chr2.2:12067630-12067649 MS.gene84319:CDS 55.0%
GCGACATGGCGAACGTTAGT+TGG + chr2.2:12064855-12064874 None:intergenic 55.0%
! GGAGGCCTTCTGGGAAAATC+AGG + chr2.2:12064933-12064952 None:intergenic 55.0%
CAGACCGAGTCGAAGCTTGG+CGG - chr2.2:12067633-12067652 MS.gene84319:CDS 60.0%
CCAGAAGGCCTCCTAGTGCT+AGG - chr2.2:12064940-12064959 MS.gene84319:CDS 60.0%
CCTAGCACTAGGAGGCCTTC+TGG + chr2.2:12064943-12064962 None:intergenic 60.0%
GAACGCGCGCAACATTGCCA+TGG - chr2.2:12066937-12066956 MS.gene84319:intron 60.0%
GGAACTTCCTAGCGGCGTTC+TGG - chr2.2:12066763-12066782 MS.gene84319:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 12064837 12067658 12064837 ID=MS.gene84319
chr2.2 mRNA 12064837 12067658 12064837 ID=MS.gene84319.t1;Parent=MS.gene84319
chr2.2 exon 12067534 12067658 12067534 ID=MS.gene84319.t1.exon1;Parent=MS.gene84319.t1
chr2.2 CDS 12067534 12067658 12067534 ID=cds.MS.gene84319.t1;Parent=MS.gene84319.t1
chr2.2 exon 12066739 12066859 12066739 ID=MS.gene84319.t1.exon2;Parent=MS.gene84319.t1
chr2.2 CDS 12066739 12066859 12066739 ID=cds.MS.gene84319.t1;Parent=MS.gene84319.t1
chr2.2 exon 12066511 12066630 12066511 ID=MS.gene84319.t1.exon3;Parent=MS.gene84319.t1
chr2.2 CDS 12066511 12066630 12066511 ID=cds.MS.gene84319.t1;Parent=MS.gene84319.t1
chr2.2 exon 12065513 12065743 12065513 ID=MS.gene84319.t1.exon4;Parent=MS.gene84319.t1
chr2.2 CDS 12065513 12065743 12065513 ID=cds.MS.gene84319.t1;Parent=MS.gene84319.t1
chr2.2 exon 12064837 12065379 12064837 ID=MS.gene84319.t1.exon5;Parent=MS.gene84319.t1
chr2.2 CDS 12064837 12065379 12064837 ID=cds.MS.gene84319.t1;Parent=MS.gene84319.t1
Gene Sequence

>MS.gene84319

ATGGACATAAGTCCTCCAACTAACGTTCGCCATGTCGCACACGTTACTTTTGATAGGTTCAATGGTTTCTTGGGTTTGCCTGATGAGTTTGAACCTGATTTTCCCAGAAGGCCTCCTAGTGCTAGGTATATGTAATATAAATTCAAGACAGAAAAAATGAAATTTGTCTCAAATTTTGTCGTCAAATGTTAGAGACGTCAAAATTTGAGACCAGTTTTATTTATTTCCATCGCTTATTTTTGTTAATAATTCAACTTTTTATATAGTAGTGTTTATAGTTTATTGTTATGATCTCCTTTACCATTTATATGTCATAATTTGGATTGAATTTAGGGTGACATTACATAACTAAATGAACGATTGGTTTTGATTAATTTCAAGATAAGATTTGTTTATTACATTTTTTATTATTACATATCTGATTTTTGTTAATAATTCAATTTTTTTTAGTAGTGTGTATATAATTCATGGTTATGATGTTCTATTACATTTTTTATTATTACAAAACATACTTTACTTCTTTACCATTTATATGTCATAATTTGGATTGAATAAGGGTGACAATGCATTACTAAATTGGATGCTTGGTTTTGATTAATTTCAAGAGAAGATTTGTTTATTTCTTTCAAAAACTATCTAAGATTTTGGTTATAAAATGTTTTAAACTATGCTAAGAAAAGCATAGGCTAATTTTTTTAGATGCCGCCTTTAATTAGCGAACGAATCATTTTCATTTGATCTAATATGTCCTTTTTGTTTTACTTTTTCCTCTCTTTTTTTGTTTGATTTTCACATGTAGTGCAACTGTTTTTGGAGTTTCAACAGAATCTATGCAGTTATCTTATGATTCAAGAGGGAACAGTGTGCCAACAATTCTTCTGTTAATGCAAAGGCATTTGTATGTTCAAGAAGGGTTGCAGGTTAATCAGTTATATGATAAGTGCTTATGCTATAAGCGCATGTTCAATTTTCAAATGACTAGTTCAATTATATTGCTTGGTTTTAAAGTTGAATTTGTACATGTATAGGTGGAAGGGATTTTCAGAATTAATGCAGACAATAGTCAAGAGGAACATGTTAGGAATCAATTGAACTTAGGATTGGTTCCTGAAGACATTGATGTACATTGTCTGGCAGGACTAATTAAGGTATGACATGGCTAGATGATTGCATCTAGTTCTTCTGTTCATGTTGATGTGTTTGTGAATGTTTGTTTCGTGAATTGATCTGAATGGTGATATTGCGAGAATTGAGTCTCTTTTGTGATCTGAATGTTGAATAGTTTTGCTATAGGAGAATTTATGTTTTTCAAGATTTTTTTTTACGTTTTTAAAAAGGATCTAAATCTGTTAAAAATAAATTACTATAGATCTGACTAATAATAGAATCATGTGATGCAGAAAATTGATTCATCATGTAACTGATTGGAGAAAGGACATTATCAATTTAAACAGTTGTCAGTCCAAGTCTAATAAATGAGACAAACAAAACATCATTTTCAAGACACATTGGCTAATTTCATCAAATTAATACTATTAGCTACACCATGCAATATTTAGGATGGTAAATTGGGAATCTGATATATCCTGTAGTTATGAATGGACATTTTTTTTTTTAATTATAGAAAAATGTTAGTATGTTAGATGTTATGTTAGTTTTTTCTCCTTCACCGGAGTTTGAACACTGGTCCTTTAACTTCTTCAACTCCTTTACCCTATATGTAAAGTTTTATGATCTTGCACAAAGCAGAAGTCTTATGATGATAATGTCATATGTATTTGACAAGAATTTCATTGTCACCATGCATTTTCATCTTTGAAAATTCAGATAAACAGTTCTATATTTTCCTTTTTCATTAATGCTTTTATACTATATACTATGATGATTTAGTATTGATATTCTTGTACTTTTCAAGGCTTGGTTTCGGGAACTTCCTAGCGGCGTTCTGGACTCATTATCACAAGAGCAAGTAATGCAATGCCAAACTGAGGAAGACTGTATTGAACTAGTGAGGCATCTACCTCATGCTGAAGCTGCACTCTTGGATTGGGCCATCAATCTAATGGCTGATGTAGTCGAACACGAAAATCTCAATAAGATGAACGCGCGCAACATTGCCATGGTTTTTGCGCCAAACATGACTCAGGTCTGTTCCAATTAAACTTTTTTTTATTTTGGCTATGAAGTATTTGCTAAACTATTATTAGTTCATGGTTATTCTGATAGTACTTATACCTTAGGTTCAAGTTAATCACAGTATTTGGCTTTTCTGATTGCAGATGGCAGATCCATTCACTGCATTGATGTACGCAGTTCAAGTGATGAATTTCTTGAAAATGCTTATATTAAGGACGCTACGAGAAAGAAAGGATTCTATCGTCGAATCTAATCCAAGATTGAATTTAGAACCTTCTGATGAGAATGTACACCGTAGACTTTTCGAGTCATTTCAGAAAGAAGATGCTGCAGCAGCAGACAATGAAGAGGCTAAAGAAATTTTTGTTACAGAAAAAACTGTCTTAGAATGTACATCCGAATCACTCGAAAAAAACTCCTCAACTGAAAGAGAATCTGGCAGTTTGATAAGCACTTCTGAGAATCTAATTTGCAATGAGGAATTGTATTGTGAGTTTCCTCCGAAAAGAAACGTGGGGAAGAATAACAAGTCTGGTCAATCAAGTAGTTCAAATGCTAGAAAAGGGTCCAAAAAGACAAGAGGACAACAACCTGTGATCAATGGAAAAGTGTCGGTCGAGAAAAAGGGAATGAGGACTTTGAGCAGCACAGATACAAGATCAGACCGAGTCGAAGCTTGGCGGTGA
Protein sequence

>MS.gene84319.t1

MDISPPTNVRHVAHVTFDRFNGFLGLPDEFEPDFPRRPPSASATVFGVSTESMQLSYDSRGNSVPTILLLMQRHLYVQEGLQVEGIFRINADNSQEEHVRNQLNLGLVPEDIDVHCLAGLIKAWFRELPSGVLDSLSQEQVMQCQTEEDCIELVRHLPHAEAALLDWAINLMADVVEHENLNKMNARNIAMVFAPNMTQMADPFTALMYAVQVMNFLKMLILRTLRERKDSIVESNPRLNLEPSDENVHRRLFESFQKEDAAAADNEEAKEIFVTEKTVLECTSESLEKNSSTERESGSLISTSENLICNEELYCEFPPKRNVGKNNKSGQSSSSNARKGSKKTRGQQPVINGKVSVEKKGMRTLSSTDTRSDRVEAWR