AlfalfaGEDB | MS.gene84666

M. sativa cultivar XinJiangDaYe / MS.gene84666

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84666.t1	XP_003627303.1	92.8	475	34	0	1	475	1	475	2.50E-247	864.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84666.t1	Q9ZUF4	61.4	394	145	1	4	390	5	398	2.7e-133	476.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84666.t1	G7L7J3	92.8	475	34	0	1	475	1	475	1.8e-247	864.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051121	MS.gene84666	0.854709	1.03E-61	-1.69E-46
MS.gene052118	MS.gene84666	0.806465	8.12E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene038078	MS.gene84666	PPI
MS.gene84666	MS.gene89575	PPI
MS.gene84666	MS.gene23970	PPI
MS.gene84666	MS.gene036055	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84666.t1	MTR_8g020920	96.421	475	17	0	1	475	1	475	0.0	949
MS.gene84666.t1	MTR_4g125260	64.781	389	126	2	5	383	2	389	0.0	517
MS.gene84666.t1	MTR_1g015020	65.600	375	126	2	3	374	4	378	1.04e-171	488
MS.gene84666.t1	MTR_2g041960	59.112	428	150	6	5	426	2	410	1.83e-170	491
MS.gene84666.t1	MTR_3g105320	65.435	379	125	5	1	374	1	378	1.15e-165	473
MS.gene84666.t1	MTR_5g026370	55.091	383	156	4	2	370	4	384	1.86e-137	402
MS.gene84666.t1	MTR_8g088410	58.702	339	137	3	47	382	39	377	5.66e-134	392
MS.gene84666.t1	MTR_7g074610	61.300	323	123	1	39	359	49	371	6.74e-133	391
MS.gene84666.t1	MTR_5g038450	57.059	340	140	4	38	372	94	432	3.18e-127	379
MS.gene84666.t1	MTR_8g100155	62.162	296	112	0	62	357	54	349	3.58e-127	375

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84666.t1	AT2G05940	62.176	386	139	1	4	382	5	390	2.06e-173	495
MS.gene84666.t1	AT1G72540	58.277	441	163	8	21	460	28	448	9.78e-166	475
MS.gene84666.t1	AT2G26290	62.842	366	130	3	4	363	7	372	2.96e-160	460
MS.gene84666.t1	AT5G35580	60.733	382	139	3	4	375	5	385	7.88e-159	460
MS.gene84666.t1	AT5G35580	61.456	371	132	3	15	375	4	373	1.31e-155	451
MS.gene84666.t1	AT5G01020	61.656	326	125	0	39	364	29	354	1.87e-137	402
MS.gene84666.t1	AT1G61590	56.250	336	144	2	37	370	58	392	3.14e-134	394
MS.gene84666.t1	AT2G28930	59.807	311	120	2	59	364	49	359	6.28e-128	377
MS.gene84666.t1	AT2G28930	59.807	311	120	2	59	364	52	362	6.56e-128	378
MS.gene84666.t1	AT2G28930	59.807	311	120	2	59	364	60	370	1.41e-127	377

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Find 72 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGTCATCAAAGTCAA+TGG	0.494531	8.2:-74178967	MS.gene84666:CDS
AAAAGTAAAGATGAAGAAAA+GGG	0.435765	8.2:-74179001	MS.gene84666:CDS
AAATTAAATGACATTCCAAT+TGG	0.445793	8.2:-74179139	MS.gene84666:CDS
AAGATTTAGTAGAATGGGCA+AGG	0.599643	8.2:-74179336	MS.gene84666:CDS
AATAATCACTTAAATCAGAT+AGG	0.419771	8.2:+74180983	None:intergenic
AATAGCAATTGGTGCTGCTA+AGG	0.452103	8.2:-74180259	MS.gene84666:CDS
AATCATTGATTCAAGACTAG+AGG	0.590389	8.2:-74179281	MS.gene84666:CDS
AATCTTTCTAATATTGGCAA+AGG	0.505141	8.2:+74178807	None:intergenic
AATGCTAAGTTGTCAGATTT+TGG	0.183065	8.2:-74180049	MS.gene84666:CDS
ACAAGAATCAAAATAGCAAT+TGG	0.448026	8.2:-74180270	MS.gene84666:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGGGAGAGAAAAATGAAA+AGG	-	chr8.2:74180929-74180948	MS.gene84666:CDS	30.0%
AAGGGAGAGAAAAATGAAAA+GGG	-	chr8.2:74180930-74180949	MS.gene84666:CDS	30.0%
ACTAACAGGAAAAAAATCAG+TGG	-	chr8.2:74180530-74180549	MS.gene84666:CDS	30.0%
ACTTCTTGTGTATGAATACA+TGG	-	chr8.2:74179465-74179484	MS.gene84666:intron	30.0%
AGAGCAAGATTTAGTAGAAT+GGG	-	chr8.2:74180572-74180591	MS.gene84666:intron	30.0%
AGATTTGATTGTGTATGTCA+TGG	+	chr8.2:74180358-74180377	None:intergenic	30.0%
ATGAGTGATGTATATAGCTT+TGG	-	chr8.2:74180489-74180508	MS.gene84666:CDS	30.0%
ATTAAAGGGGTAGGTTTAAT+TGG	+	chr8.2:74180009-74180028	None:intergenic	30.0%
ATTTGATCCCACTAATGAAT+TGG	+	chr8.2:74178983-74179002	None:intergenic	30.0%
CAATGGAAATCATTTGTACT+TGG	-	chr8.2:74178832-74178851	MS.gene84666:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	74178814	74181121	74178814	ID=MS.gene84666
chr8.2	mRNA	74178814	74181121	74178814	ID=MS.gene84666.t1;Parent=MS.gene84666
chr8.2	exon	74180738	74181121	74180738	ID=MS.gene84666.t1.exon1;Parent=MS.gene84666.t1
chr8.2	CDS	74180738	74181121	74180738	ID=cds.MS.gene84666.t1;Parent=MS.gene84666.t1
chr8.2	exon	74180415	74180550	74180415	ID=MS.gene84666.t1.exon2;Parent=MS.gene84666.t1
chr8.2	CDS	74180415	74180550	74180415	ID=cds.MS.gene84666.t1;Parent=MS.gene84666.t1
chr8.2	exon	74180182	74180318	74180182	ID=MS.gene84666.t1.exon3;Parent=MS.gene84666.t1
chr8.2	CDS	74180182	74180318	74180182	ID=cds.MS.gene84666.t1;Parent=MS.gene84666.t1
chr8.2	exon	74179954	74180077	74179954	ID=MS.gene84666.t1.exon4;Parent=MS.gene84666.t1
chr8.2	CDS	74179954	74180077	74179954	ID=cds.MS.gene84666.t1;Parent=MS.gene84666.t1
chr8.2	exon	74178814	74179460	74178814	ID=MS.gene84666.t1.exon5;Parent=MS.gene84666.t1
chr8.2	CDS	74178814	74179460	74178814	ID=cds.MS.gene84666.t1;Parent=MS.gene84666.t1

Gene Sequence

>MS.gene84666

ATGCCTTCAAAGAAAATTCAATGGAAATCATTTGTACTTGGTTGTTTCAAGGACAAAAACCCTTCATTGGAAACACCAAAATTTGTTTCAAAAAAGACAGGTTCAAGTAGAATTTCCCTATCTGATTTAAGTGATTATTCATCACCTTCTGTCATGAGTGATTTATCCAATTCATTAGTGGGATCAAATCTTCATATTTTCACTTGTAAGGAACTCCAAGAAATCACACACAACTTTGACAAATCAAATTTTCTTGGAGAAGGTGGATTTGGAAAGGTGTACAAAGGTTTTATTGATGATAAACTTAGGCCTACACTTGTTCCTAAAGCTGTGGCTGTTAAGGCCTTAAACTTGGATGGAAAACAAGGCCATAGAGAGTGGTTGGTAAGAATTTTTCTAAACTTTTCAACATTATTTCCTATCATAGTGTTTTAAAAATCAAACTGGACGGCTCAACCGATTAAACCATGAACCGAACTTTACTATAATTCGATCATGTAGTTTCGTCTGGTTCGAGTAGTTTAAGATGGTTGATGAAAGTTTTTTAAATGTTTTTCTTTGTATTGTATAGGCTGAAGTTATCTTTTTGGGGCAGTTGAAGCATCGCAATCTTGTTAACTTAATTGGCTATTGCTATGAAGATGAACATAGACTTCTTGTGTATGAATACATGGAAAGAGGAAGTCTTGAAGAAAAACTTTTCAAAGGTAAATGCATGTTTAATTTTTTCAAAGGTAGATGAATATGGTAATTCTTATTTAAATATTTTCTAACAAAATGATTATTCTCCTTTTAAAATGCAGGTTATTTAGCAACTTTACCTTGGTTAACAAGAATCAAAATAGCAATTGGTGCTGCTAAGGGACTAGCTTTTCTTCATGAAGAGGAGAAGCCAGTTATATATAGAGATGTTAAAGCCTCAAACATTCTATTGGATGCTGTAAGTATTCATTCATGAGCCTAATTATATTCATGCATTTTATCAAAATTTGTTGATCAAATAAAAGCAACACAAAGTAACATGAAAAACTCATTCTTTTTCAGGATTACAATGCTAAGTTGTCAGATTTTGGTTTAGCAATAGATGGACCAGATAAAGATCAAACACATATTACAACTCGTGTGATGGGTACACATGGATATGCTGCTCCTGAATATATAAATACAGGTATATTCTAATCTATAGTCAAAACCAATTAAACCTACCCCTTTAATTTTCATTTAGGCTTAAATATATTTTTATTCTTTAAAATAAGATAACTAGTACTGTTTTTGGTCCCTCAAAATTTTCGTCATTTTTTTGTCCTTTTTTAGTTTTTTTTTTAAAGATGGTTACAAGTGTCTGGCTTATATACTCTTATAGTCAACTTTTGAGATTTGGATTGTGTGGCGAGTGTATGCGGCTAGCAACGTCTACATGGTCCGATCAAGATCAGATGGCCTAATTATATTTTTTTTTATTTTTTTTATGTTTTTAAAATCGAATATAGGGAACTTGAAATATGAACTATATATGATCTTGATCGAACGGTCCTGATGTACCATGACATACACAATCAAATCTCAACTTTTTTTTTTCCTTTTTCGGAGACATGAGGGACCAATTGTAATCGTTGATGAATATTTAAGCTAACTCACTGTTTTTTATCTCCTTCTTTTAGGTCGTTTGACAACAATGAGTGATGTATATAGCTTTGGAGTTGTTCTCTTAGAGCTACTAACAGGAAAAAAATCAGTGGACAAAAAAAGAACTCCAAGAGAGCAAGATTTAGTAGAATGGGCAAGGCCATCATTGAAGGATTCACACAGACTTGAAAGAATCATTGATTCAAGACTAGAGGATCAATACTCAATTGAAGGAGCTAGAAAATTAGCAATCTTGACTTATCAATGTTTAAGTCATCATGATAAAAGTAGACCAACAATGAGAACAGTTGTTAAGACCTTAGAGCAGGTCATGAAATTAAATGACATTCCAATTGGTCATTTTGTTTATGTAGCTCCAATTGAGGTAACAAATATTGAAGTGTCACTAAATGTGGATAAAAAAGGAAATGAAAATGAATGTGATGAGAATGAGATCAACAAAGGTGTTGTGAAAAGTAAAGATGAAGAAAAGGGAGAGAAAAATGAAAAGGGTCATCAAAGTCAATGGAGAAGTCGCAATAATAGACGACGGATTAAGCCATTGATGAAGTCTCGTTCTGTTCACTCGGACACTGCTTTGTATAAGACTCTTGGAACTAGTTTGTACTCGCCCAAGCAAAGCAAGGAGAACCAACAAGAAGTGAACCTTTGCCAATATTAG

Protein sequence

>MS.gene84666.t1

MPSKKIQWKSFVLGCFKDKNPSLETPKFVSKKTGSSRISLSDLSDYSSPSVMSDLSNSLVGSNLHIFTCKELQEITHNFDKSNFLGEGGFGKVYKGFIDDKLRPTLVPKAVAVKALNLDGKQGHREWLAEVIFLGQLKHRNLVNLIGYCYEDEHRLLVYEYMERGSLEEKLFKGYLATLPWLTRIKIAIGAAKGLAFLHEEEKPVIYRDVKASNILLDADYNAKLSDFGLAIDGPDKDQTHITTRVMGTHGYAAPEYINTGRLTTMSDVYSFGVVLLELLTGKKSVDKKRTPREQDLVEWARPSLKDSHRLERIIDSRLEDQYSIEGARKLAILTYQCLSHHDKSRPTMRTVVKTLEQVMKLNDIPIGHFVYVAPIEVTNIEVSLNVDKKGNENECDENEINKGVVKSKDEEKGEKNEKGHQSQWRSRNNRRRIKPLMKSRSVHSDTALYKTLGTSLYSPKQSKENQQEVNLCQY