Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84749.t1 | XP_013444598.1 | 86.5 | 386 | 52 | 0 | 1 | 386 | 12 | 397 | 8.40E-185 | 656.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84749.t1 | Q9S7T8 | 55.2 | 386 | 166 | 4 | 6 | 384 | 5 | 390 | 9.3e-116 | 418.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84749.t1 | A0A072TP44 | 86.5 | 386 | 52 | 0 | 1 | 386 | 12 | 397 | 6.0e-185 | 656.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006610 | MS.gene84749 | PPI |
| MS.gene84749 | MS.gene065944 | PPI |
| MS.gene84749 | MS.gene031697 | PPI |
| MS.gene065945 | MS.gene84749 | PPI |
| MS.gene84749 | MS.gene045585 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84749.t1 | MTR_8g027395 | 86.528 | 386 | 52 | 0 | 1 | 386 | 12 | 397 | 0.0 | 678 |
| MS.gene84749.t1 | MTR_8g027420 | 84.715 | 386 | 48 | 1 | 1 | 386 | 1 | 375 | 0.0 | 648 |
| MS.gene84749.t1 | MTR_4g088535 | 72.966 | 381 | 87 | 2 | 5 | 385 | 6 | 370 | 0.0 | 550 |
| MS.gene84749.t1 | MTR_4g088525 | 74.238 | 361 | 93 | 0 | 25 | 385 | 8 | 368 | 0.0 | 542 |
| MS.gene84749.t1 | MTR_3g018740 | 70.573 | 384 | 110 | 2 | 4 | 384 | 3 | 386 | 0.0 | 518 |
| MS.gene84749.t1 | MTR_3g101010 | 68.475 | 387 | 118 | 1 | 4 | 386 | 3 | 389 | 0.0 | 508 |
| MS.gene84749.t1 | MTR_4g045707 | 66.753 | 388 | 127 | 2 | 1 | 386 | 1 | 388 | 1.13e-179 | 504 |
| MS.gene84749.t1 | MTR_2g045980 | 64.858 | 387 | 127 | 4 | 4 | 384 | 3 | 386 | 5.38e-171 | 483 |
| MS.gene84749.t1 | MTR_2g046030 | 64.341 | 387 | 129 | 4 | 4 | 384 | 3 | 386 | 5.96e-170 | 480 |
| MS.gene84749.t1 | MTR_8g461160 | 62.755 | 392 | 138 | 2 | 1 | 384 | 1 | 392 | 3.06e-165 | 468 |
| MS.gene84749.t1 | MTR_3g101180 | 63.452 | 394 | 130 | 4 | 6 | 385 | 6 | 399 | 4.30e-165 | 468 |
| MS.gene84749.t1 | MTR_3g048000 | 63.325 | 379 | 120 | 3 | 9 | 385 | 30 | 391 | 5.62e-165 | 468 |
| MS.gene84749.t1 | MTR_3g101030 | 61.443 | 402 | 131 | 5 | 7 | 386 | 30 | 429 | 1.60e-164 | 468 |
| MS.gene84749.t1 | MTR_7g050810 | 59.591 | 391 | 150 | 2 | 4 | 386 | 14 | 404 | 1.62e-157 | 449 |
| MS.gene84749.t1 | MTR_3g101130 | 60.560 | 393 | 144 | 4 | 1 | 386 | 1 | 389 | 1.11e-156 | 446 |
| MS.gene84749.t1 | MTR_7g047780 | 59.335 | 391 | 151 | 2 | 4 | 386 | 12 | 402 | 5.72e-156 | 445 |
| MS.gene84749.t1 | MTR_7g451890 | 58.568 | 391 | 154 | 2 | 4 | 386 | 12 | 402 | 1.20e-155 | 444 |
| MS.gene84749.t1 | MTR_7g050750 | 58.312 | 391 | 155 | 2 | 4 | 386 | 6 | 396 | 1.09e-154 | 441 |
| MS.gene84749.t1 | MTR_3g101050 | 60.363 | 386 | 124 | 5 | 8 | 384 | 31 | 396 | 2.34e-147 | 423 |
| MS.gene84749.t1 | MTR_3g015620 | 59.173 | 387 | 126 | 5 | 6 | 384 | 16 | 378 | 2.95e-141 | 407 |
| MS.gene84749.t1 | MTR_3g102920 | 56.430 | 381 | 122 | 6 | 13 | 385 | 65 | 409 | 4.60e-132 | 384 |
| MS.gene84749.t1 | MTR_3g101200 | 54.220 | 391 | 148 | 5 | 1 | 385 | 26 | 391 | 2.68e-126 | 369 |
| MS.gene84749.t1 | MTR_3g101190 | 54.972 | 362 | 104 | 2 | 25 | 386 | 10 | 312 | 3.66e-124 | 361 |
| MS.gene84749.t1 | MTR_3g018747 | 67.568 | 259 | 66 | 3 | 130 | 384 | 9 | 253 | 1.86e-113 | 332 |
| MS.gene84749.t1 | MTR_3g100995 | 65.625 | 256 | 83 | 3 | 134 | 386 | 11 | 264 | 7.17e-113 | 330 |
| MS.gene84749.t1 | MTR_3g100010 | 56.774 | 310 | 86 | 4 | 31 | 307 | 42 | 336 | 2.21e-109 | 324 |
| MS.gene84749.t1 | MTR_7g050830 | 50.473 | 317 | 124 | 3 | 4 | 298 | 14 | 319 | 8.05e-101 | 302 |
| MS.gene84749.t1 | MTR_3g114310 | 43.734 | 391 | 201 | 10 | 11 | 386 | 24 | 410 | 5.69e-94 | 288 |
| MS.gene84749.t1 | MTR_3g015760 | 60.536 | 261 | 93 | 5 | 130 | 384 | 23 | 279 | 6.28e-94 | 283 |
| MS.gene84749.t1 | MTR_3g100520 | 65.138 | 218 | 65 | 4 | 171 | 386 | 1 | 209 | 6.60e-90 | 270 |
| MS.gene84749.t1 | MTR_3g111160 | 66.829 | 205 | 65 | 2 | 185 | 386 | 16 | 220 | 5.39e-85 | 258 |
| MS.gene84749.t1 | MTR_3g101110 | 58.996 | 239 | 64 | 4 | 130 | 360 | 68 | 280 | 2.14e-83 | 256 |
| MS.gene84749.t1 | MTR_3g099970 | 64.796 | 196 | 52 | 2 | 130 | 325 | 20 | 198 | 9.05e-81 | 246 |
| MS.gene84749.t1 | MTR_2g046410 | 62.212 | 217 | 71 | 4 | 175 | 384 | 135 | 347 | 1.29e-79 | 248 |
| MS.gene84749.t1 | MTR_3g102870 | 64.151 | 159 | 57 | 0 | 195 | 353 | 3 | 161 | 1.49e-65 | 206 |
| MS.gene84749.t1 | MTR_3g111150 | 61.272 | 173 | 43 | 2 | 9 | 181 | 2 | 150 | 1.93e-65 | 206 |
| MS.gene84749.t1 | MTR_3g101150 | 62.025 | 158 | 52 | 1 | 236 | 385 | 1 | 158 | 4.53e-58 | 186 |
| MS.gene84749.t1 | MTR_3g101020 | 54.839 | 186 | 55 | 3 | 204 | 386 | 1 | 160 | 6.89e-58 | 186 |
| MS.gene84749.t1 | MTR_3g100990 | 64.000 | 150 | 53 | 1 | 6 | 155 | 5 | 153 | 5.71e-54 | 186 |
| MS.gene84749.t1 | MTR_4g093550 | 62.921 | 89 | 33 | 0 | 1 | 89 | 1 | 89 | 9.99e-31 | 113 |
| MS.gene84749.t1 | MTR_6g046890 | 55.814 | 86 | 33 | 1 | 14 | 94 | 7 | 92 | 1.80e-20 | 87.0 |
| MS.gene84749.t1 | MTR_3g101140 | 57.971 | 69 | 24 | 2 | 323 | 386 | 48 | 116 | 1.01e-14 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84749.t1 | AT1G47710 | 55.181 | 386 | 166 | 4 | 6 | 384 | 5 | 390 | 1.04e-148 | 426 |
| MS.gene84749.t1 | AT1G47710 | 55.181 | 386 | 166 | 4 | 6 | 384 | 32 | 417 | 7.74e-148 | 425 |
| MS.gene84749.t1 | AT3G45220 | 46.410 | 390 | 197 | 4 | 4 | 383 | 3 | 390 | 5.91e-121 | 356 |
| MS.gene84749.t1 | AT2G25240 | 47.927 | 386 | 189 | 7 | 4 | 383 | 3 | 382 | 6.02e-119 | 350 |
| MS.gene84749.t1 | AT2G26390 | 46.667 | 390 | 192 | 7 | 4 | 383 | 3 | 386 | 1.08e-114 | 340 |
| MS.gene84749.t1 | AT1G64030 | 43.299 | 388 | 189 | 5 | 6 | 383 | 5 | 371 | 1.40e-101 | 306 |
| MS.gene84749.t1 | AT2G14540 | 44.246 | 391 | 183 | 7 | 4 | 383 | 31 | 397 | 2.65e-96 | 293 |
| MS.gene84749.t1 | AT1G62170 | 41.803 | 366 | 180 | 5 | 28 | 383 | 89 | 431 | 2.12e-94 | 289 |
| MS.gene84749.t1 | AT1G62170 | 37.441 | 422 | 197 | 7 | 6 | 383 | 66 | 464 | 1.53e-87 | 273 |
| MS.gene84749.t1 | AT2G35580 | 40.816 | 392 | 197 | 9 | 4 | 383 | 3 | 371 | 1.26e-86 | 267 |
| MS.gene84749.t1 | AT1G64010 | 44.907 | 216 | 95 | 4 | 171 | 383 | 1 | 195 | 2.00e-60 | 194 |
| MS.gene84749.t1 | AT1G64010 | 44.776 | 201 | 87 | 4 | 186 | 383 | 2 | 181 | 3.04e-54 | 177 |
| MS.gene84749.t1 | AT1G63280 | 52.542 | 118 | 52 | 2 | 127 | 242 | 5 | 120 | 9.06e-34 | 122 |
| MS.gene84749.t1 | AT1G62160 | 40.000 | 200 | 88 | 5 | 193 | 383 | 42 | 218 | 9.36e-33 | 122 |
| MS.gene84749.t1 | AT1G51330 | 49.167 | 120 | 51 | 1 | 104 | 223 | 15 | 124 | 3.43e-27 | 107 |
| MS.gene84749.t1 | AT2G35555 | 38.462 | 104 | 42 | 2 | 250 | 351 | 1 | 84 | 5.35e-12 | 62.8 |
| MS.gene84749.t1 | AT1G64020 | 34.211 | 114 | 68 | 4 | 11 | 120 | 10 | 120 | 6.16e-12 | 62.8 |
Find 88 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACTAAAGAAGTGAATTTA+TGG | 0.193244 | 8.4:+69516820 | MS.gene84749:CDS |
| GTGAGTTTACCTTTCTCTTA+TGG | 0.244734 | 8.4:+69517308 | MS.gene84749:CDS |
| CACTTGTTTGCAAGGAAGCT+TGG | 0.273276 | 8.4:-69517207 | None:intergenic |
| AACCGTGTCTGCCGATTATA+AGG | 0.308192 | 8.4:+69515657 | MS.gene84749:CDS |
| TCAAGGTTGCTGCTCATAAA+AGG | 0.308829 | 8.4:-69517023 | None:intergenic |
| AATCTTCTCTAATTAGAAAT+AGG | 0.325707 | 8.4:-69517505 | None:intergenic |
| GCTACAGCCAATGCTGGAAT+AGG | 0.327490 | 8.4:+69517434 | MS.gene84749:CDS |
| CTTGTCCTCCAACGAGGAAA+TGG | 0.332165 | 8.4:-69516957 | None:intergenic |
| CCAAATGAAAATTTGAATCT+TGG | 0.344733 | 8.4:-69517251 | None:intergenic |
| CAGGTTCTCAATCCTCTTGT+TGG | 0.356093 | 8.4:+69517554 | MS.gene84749:CDS |
| ACTTGTTTGCAAGGAAGCTT+GGG | 0.364283 | 8.4:-69517206 | None:intergenic |
| CTACAGCCAATGCTGGAATA+GGG | 0.378345 | 8.4:+69517435 | MS.gene84749:CDS |
| CATCAAAAGCACTAATAAAC+TGG | 0.379690 | 8.4:-69517046 | None:intergenic |
| AGGTTCTCAATCCTCTTGTT+GGG | 0.390454 | 8.4:+69517555 | MS.gene84749:CDS |
| TTTCTTCCAAATGCAAAAGA+TGG | 0.390951 | 8.4:+69517134 | MS.gene84749:CDS |
| TGAAGGAAGGTTGAAGAGAA+AGG | 0.398588 | 8.4:-69515630 | None:intergenic |
| GTCCGGCAAAGATGATCGTT+TGG | 0.407941 | 8.4:-69517532 | None:intergenic |
| CGGAAGAAGCTGCGTCTTTG+AGG | 0.413427 | 8.4:-69515561 | None:intergenic |
| ACCCAAACGATCATCTTTGC+CGG | 0.414042 | 8.4:+69517530 | MS.gene84749:CDS |
| ACCTTGTTTATGAAATCAAC+AGG | 0.428732 | 8.4:-69515691 | None:intergenic |
| AAAAGATGGACTATCAACTA+TGG | 0.429712 | 8.4:+69517148 | MS.gene84749:CDS |
| TCTCGTATGATGAAGGAGTT+AGG | 0.442586 | 8.4:+69517284 | MS.gene84749:CDS |
| TGCAAGGAAGCTTGGGCTCT+AGG | 0.444888 | 8.4:-69517199 | None:intergenic |
| GAAGGAAGGTTGAAGAGAAA+GGG | 0.450222 | 8.4:-69515629 | None:intergenic |
| CAATGATGCTGAGGACAACT+TGG | 0.452304 | 8.4:-69515435 | None:intergenic |
| AACGATCATCTTTGCCGGAC+AGG | 0.453881 | 8.4:+69517535 | MS.gene84749:CDS |
| GACTAAAGAAGTGAATTTAT+GGG | 0.454605 | 8.4:+69516821 | MS.gene84749:CDS |
| ATCATTGCTGCTGGCTCTGA+CGG | 0.455190 | 8.4:+69515451 | MS.gene84749:CDS |
| GTCCTCAGCATCATTGCTGC+TGG | 0.456068 | 8.4:+69515442 | MS.gene84749:CDS |
| AGAAGACTTGTGAAATATGT+TGG | 0.458817 | 8.4:-69517381 | None:intergenic |
| TCCGGCAAAGATGATCGTTT+GGG | 0.463042 | 8.4:-69517531 | None:intergenic |
| GGGGCCATGTGTGTGCCAAC+TGG | 0.466848 | 8.4:+69517455 | MS.gene84749:CDS |
| GGCAGACACGGTTTCTTTGA+AGG | 0.468084 | 8.4:-69515647 | None:intergenic |
| GTCAAACCTCCATAAGAGAA+AGG | 0.475976 | 8.4:-69517317 | None:intergenic |
| TTAAAGAAATTCTTCCTCAA+GGG | 0.477536 | 8.4:+69516868 | MS.gene84749:CDS |
| AAAATGGTGGACTCTCTTGA+AGG | 0.485242 | 8.4:+69517341 | MS.gene84749:CDS |
| ATTAAAGAAATTCTTCCTCA+AGG | 0.489087 | 8.4:+69516867 | MS.gene84749:CDS |
| GAAATATGTTGGAAACAGAA+AGG | 0.489609 | 8.4:-69517370 | None:intergenic |
| GGAGTAATCCATTTCCTCGT+TGG | 0.494938 | 8.4:+69516949 | MS.gene84749:CDS |
| GAAGCTGCTACAGCCAATGC+TGG | 0.496627 | 8.4:+69517428 | MS.gene84749:CDS |
| GATGATCGATGGATTTGAAA+CGG | 0.499269 | 8.4:-69515504 | None:intergenic |
| AGCGGGAGTAGCCTTATAAT+CGG | 0.510973 | 8.4:-69515668 | None:intergenic |
| TTTCTCCACCCACACACCAT+TGG | 0.515807 | 8.4:-69515605 | None:intergenic |
| CGTCTTTGAGGAGGACAGAA+AGG | 0.521608 | 8.4:-69515549 | None:intergenic |
| TAGAAATAGGAAAGGGTGAT+CGG | 0.524118 | 8.4:-69517492 | None:intergenic |
| AGAGATGTTTGGCGATGGTG+AGG | 0.524270 | 8.4:-69515366 | None:intergenic |
| AGTTTACCTTTCTCTTATGG+AGG | 0.524648 | 8.4:+69517311 | MS.gene84749:CDS |
| GGTTGGTGCTTGATTCATCA+AGG | 0.525769 | 8.4:-69515330 | None:intergenic |
| CTTCGCCTGCCTTATAAACA+AGG | 0.527592 | 8.4:+69517080 | MS.gene84749:CDS |
| CTCTAATTAGAAATAGGAAA+GGG | 0.528170 | 8.4:-69517499 | None:intergenic |
| GTAATCCATTTCCTCGTTGG+AGG | 0.529811 | 8.4:+69516952 | MS.gene84749:CDS |
| CCTACTCTCACTTGTTTGCA+AGG | 0.531852 | 8.4:-69517215 | None:intergenic |
| GACACGGTTTCTTTGAAGGA+AGG | 0.534452 | 8.4:-69515643 | None:intergenic |
| ACTATCAACTATGGTTAAGA+AGG | 0.537243 | 8.4:+69517157 | MS.gene84749:CDS |
| TTTATGAAATCAACAGGAGC+GGG | 0.540153 | 8.4:-69515685 | None:intergenic |
| GAGGGAAACTTTCGCTTGGT+TGG | 0.544101 | 8.4:-69515347 | None:intergenic |
| AAGAGGATTGAGAACCTGTC+CGG | 0.545651 | 8.4:-69517549 | None:intergenic |
| TCCTGTTGATTTCATAAACA+AGG | 0.545752 | 8.4:+69515690 | MS.gene84749:CDS |
| AAAAGAGAGGCGAGGACCAT+CGG | 0.546211 | 8.4:-69515581 | None:intergenic |
| GCTATAAAGTCTATTCCAGT+TGG | 0.552837 | 8.4:-69517470 | None:intergenic |
| CATGGCCCCTATTCCAGCAT+TGG | 0.553337 | 8.4:-69517441 | None:intergenic |
| TGAAACTTCTCGTATGATGA+AGG | 0.556652 | 8.4:+69517277 | MS.gene84749:CDS |
| TGACTGAGCTGCCATTCAGA+AGG | 0.569757 | 8.4:-69516995 | None:intergenic |
| GAGATGTTTGGCGATGGTGA+GGG | 0.570302 | 8.4:-69515365 | None:intergenic |
| AAAGGAGTTAAGATGATCGA+TGG | 0.574567 | 8.4:-69515515 | None:intergenic |
| AAGCACTAATAAACTGGTCA+AGG | 0.577273 | 8.4:-69517040 | None:intergenic |
| TACAGCCAATGCTGGAATAG+GGG | 0.578083 | 8.4:+69517436 | MS.gene84749:CDS |
| AGAAAGGAGATGAGAGACAA+AGG | 0.579717 | 8.4:-69515533 | None:intergenic |
| TCTCTAATTAGAAATAGGAA+AGG | 0.590645 | 8.4:-69517500 | None:intergenic |
| TGGTGAGGGAAACTTTCGCT+TGG | 0.590868 | 8.4:-69515351 | None:intergenic |
| AAAGACGCAGCTTCTTCCGA+TGG | 0.595754 | 8.4:+69515565 | MS.gene84749:CDS |
| AGTTAAGATCACCCAACAAG+AGG | 0.599430 | 8.4:-69517566 | None:intergenic |
| AGCCTTATAATCGGCAGACA+CGG | 0.604651 | 8.4:-69515659 | None:intergenic |
| ATCAACTATGGTTAAGAAGG+TGG | 0.610442 | 8.4:+69517160 | MS.gene84749:CDS |
| TCTATAGAAGTAAACGAGGA+AGG | 0.611113 | 8.4:+69517401 | MS.gene84749:CDS |
| AGCCAGCAGCAATGATGCTG+AGG | 0.612609 | 8.4:-69515444 | None:intergenic |
| CCTTGCAAACAAGTGAGAGT+AGG | 0.616089 | 8.4:+69517215 | MS.gene84749:CDS |
| AAGAAGCTGCGTCTTTGAGG+AGG | 0.630926 | 8.4:-69515558 | None:intergenic |
| AGGACAACTTGGAGAGACAA+TGG | 0.634536 | 8.4:-69515424 | None:intergenic |
| TATTCCAGTTGGCACACACA+TGG | 0.635717 | 8.4:-69517459 | None:intergenic |
| GTTTATGAAATCAACAGGAG+CGG | 0.639034 | 8.4:-69515686 | None:intergenic |
| ACACACCATTGGCAAAAGAG+AGG | 0.646815 | 8.4:-69515594 | None:intergenic |
| TGAGAAGAGATGTTTGGCGA+TGG | 0.659173 | 8.4:-69515371 | None:intergenic |
| GATCGATGGATTTGAAACGG+AGG | 0.709969 | 8.4:-69515501 | None:intergenic |
| TATTTGCTTGTCCTCCAACG+AGG | 0.713178 | 8.4:-69516963 | None:intergenic |
| GTCTTCTATAGAAGTAAACG+AGG | 0.713462 | 8.4:+69517397 | MS.gene84749:CDS |
| AAGCTGTCAACTGACCCTTG+AGG | 0.752414 | 8.4:-69516882 | None:intergenic |
| CCATTGGCAAAAGAGAGGCG+AGG | 0.766373 | 8.4:-69515589 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATTTGATATTGTATTTA+AGG | + | chr8.4:69516788-69516807 | MS.gene84749:intron | 10.0% |
| !! | TATTATTTATATTCTTTGAA+TGG | - | chr8.4:69516622-69516641 | None:intergenic | 10.0% |
| !! | ACATAATATTCCTTAAATTT+GGG | - | chr8.4:69515931-69515950 | None:intergenic | 15.0% |
| !! | TACATAATATTCCTTAAATT+TGG | - | chr8.4:69515932-69515951 | None:intergenic | 15.0% |
| !! | TATTATCTCATATTATCTAT+TGG | - | chr8.4:69516221-69516240 | None:intergenic | 15.0% |
| !!! | TTGTGTTATTGATTAATTAA+TGG | + | chr8.4:69515768-69515787 | MS.gene84749:intron | 15.0% |
| !! | AATCTTCTCTAATTAGAAAT+AGG | - | chr8.4:69517508-69517527 | None:intergenic | 20.0% |
| !! | AATTTAACGGTGATTATATT+TGG | + | chr8.4:69516056-69516075 | MS.gene84749:intron | 20.0% |
| !! | ACTGAGATAAACAAATTTAA+CGG | + | chr8.4:69516043-69516062 | MS.gene84749:intron | 20.0% |
| !!! | AATGTTGATTTATGCTTAAT+TGG | + | chr8.4:69516310-69516329 | MS.gene84749:intron | 20.0% |
| !!! | ACTATTCAATCTTATTTAGA+AGG | - | chr8.4:69515902-69515921 | None:intergenic | 20.0% |
| !!! | CAAGATTCAAATTTTCATTT+GGG | + | chr8.4:69517252-69517271 | MS.gene84749:CDS | 20.0% |
| !!! | CTATTCAATCTTATTTAGAA+GGG | - | chr8.4:69515901-69515920 | None:intergenic | 20.0% |
| !!! | TTATCTTTTCCTTGTTTATA+AGG | - | chr8.4:69517092-69517111 | None:intergenic | 20.0% |
| ! | ATTAAAGAAATTCTTCCTCA+AGG | + | chr8.4:69516867-69516886 | MS.gene84749:CDS | 25.0% |
| ! | CCAAATGAAAATTTGAATCT+TGG | - | chr8.4:69517254-69517273 | None:intergenic | 25.0% |
| ! | CTCTAATTAGAAATAGGAAA+GGG | - | chr8.4:69517502-69517521 | None:intergenic | 25.0% |
| ! | GACTAAAGAAGTGAATTTAT+GGG | + | chr8.4:69516821-69516840 | MS.gene84749:CDS | 25.0% |
| ! | TAGTGTATATCCCAAATTTA+AGG | + | chr8.4:69515918-69515937 | MS.gene84749:intron | 25.0% |
| ! | TCTCTAATTAGAAATAGGAA+AGG | - | chr8.4:69517503-69517522 | None:intergenic | 25.0% |
| ! | TGACTAAAGAAGTGAATTTA+TGG | + | chr8.4:69516820-69516839 | MS.gene84749:CDS | 25.0% |
| ! | TTAAAGAAATTCTTCCTCAA+GGG | + | chr8.4:69516868-69516887 | MS.gene84749:CDS | 25.0% |
| !! | AAAGATTTTCTATGCTTCAA+AGG | - | chr8.4:69515835-69515854 | None:intergenic | 25.0% |
| !! | AGTCTAATTTTCACATATTG+CGG | - | chr8.4:69516696-69516715 | None:intergenic | 25.0% |
| !! | CCAAGATTCAAATTTTCATT+TGG | + | chr8.4:69517251-69517270 | MS.gene84749:CDS | 25.0% |
| !! | TTAATACCCTTGTCTATTTT+AGG | + | chr8.4:69516543-69516562 | MS.gene84749:intron | 25.0% |
| !!! | CTTTTAGCCTTTAATTCTTT+TGG | - | chr8.4:69516459-69516478 | None:intergenic | 25.0% |
| AAATGCTAAATCCCATACAA+AGG | - | chr8.4:69516424-69516443 | None:intergenic | 30.0% | |
| AATGCTAAATCCCATACAAA+GGG | - | chr8.4:69516423-69516442 | None:intergenic | 30.0% | |
| ACAAATTAAAAAGCAGAGCA+TGG | - | chr8.4:69515752-69515771 | None:intergenic | 30.0% | |
| ACTATCAACTATGGTTAAGA+AGG | + | chr8.4:69517157-69517176 | MS.gene84749:CDS | 30.0% | |
| ACTTCAAAATCCTACTCAAA+TGG | - | chr8.4:69516485-69516504 | None:intergenic | 30.0% | |
| AGAAGACTTGTGAAATATGT+TGG | - | chr8.4:69517384-69517403 | None:intergenic | 30.0% | |
| AGTGAAAATTAGAATGTTCG+TGG | - | chr8.4:69516026-69516045 | None:intergenic | 30.0% | |
| ATGAGAAGTTGAATTGATGT+TGG | - | chr8.4:69516096-69516115 | None:intergenic | 30.0% | |
| CTAAAGCCTAAAATAGACAA+GGG | - | chr8.4:69516552-69516571 | None:intergenic | 30.0% | |
| GAAATATGTTGGAAACAGAA+AGG | - | chr8.4:69517373-69517392 | None:intergenic | 30.0% | |
| TGAGAAGTTGAATTGATGTT+GGG | - | chr8.4:69516095-69516114 | None:intergenic | 30.0% | |
| TGATTTATGCTTAATTGGCT+AGG | + | chr8.4:69516315-69516334 | MS.gene84749:intron | 30.0% | |
| TGCTTCTCCAAAAGAATTAA+AGG | + | chr8.4:69516449-69516468 | MS.gene84749:intron | 30.0% | |
| TTATGGAGGTTTGACAAAAA+TGG | + | chr8.4:69517325-69517344 | MS.gene84749:CDS | 30.0% | |
| TTTCTTCCAAATGCAAAAGA+TGG | + | chr8.4:69517134-69517153 | MS.gene84749:CDS | 30.0% | |
| ! | ACCTTGTTTATGAAATCAAC+AGG | - | chr8.4:69515694-69515713 | None:intergenic | 30.0% |
| ! | CAATCTTATTTAGAAGGGAA+AGG | - | chr8.4:69515896-69515915 | None:intergenic | 30.0% |
| ! | CAGTTTATTAGTGCTTTTGA+TGG | + | chr8.4:69517047-69517066 | MS.gene84749:CDS | 30.0% |
| ! | GAAATTTGTTCCCTTTGTAT+GGG | + | chr8.4:69516410-69516429 | MS.gene84749:intron | 30.0% |
| ! | TATGATTTTCACCTTCTGAA+TGG | + | chr8.4:69516984-69517003 | MS.gene84749:CDS | 30.0% |
| !! | AAAAGATGGACTATCAACTA+TGG | + | chr8.4:69517148-69517167 | MS.gene84749:CDS | 30.0% |
| !! | CATCAAAAGCACTAATAAAC+TGG | - | chr8.4:69517049-69517068 | None:intergenic | 30.0% |
| !! | GCTAATGCACTGTATTTTAA+AGG | + | chr8.4:69516921-69516940 | MS.gene84749:CDS | 30.0% |
| !! | TATTGCGGTTCTAAATTAGT+TGG | - | chr8.4:69516681-69516700 | None:intergenic | 30.0% |
| !! | TCCTGTTGATTTCATAAACA+AGG | + | chr8.4:69515690-69515709 | MS.gene84749:CDS | 30.0% |
| !! | TTCTTTTGAGAAGAGATGTT+TGG | - | chr8.4:69515380-69515399 | None:intergenic | 30.0% |
| AAAGGAGTTAAGATGATCGA+TGG | - | chr8.4:69515518-69515537 | None:intergenic | 35.0% | |
| AAGCACTAATAAACTGGTCA+AGG | - | chr8.4:69517043-69517062 | None:intergenic | 35.0% | |
| AAGTTGAATTGATGTTGGGA+AGG | - | chr8.4:69516091-69516110 | None:intergenic | 35.0% | |
| ACAGCTCTGTTTATCTAGAA+GGG | + | chr8.4:69516506-69516525 | MS.gene84749:intron | 35.0% | |
| AGTGTAAGTATTATCACCGT+CGG | - | chr8.4:69516380-69516399 | None:intergenic | 35.0% | |
| AGTTTACCTTTCTCTTATGG+AGG | + | chr8.4:69517311-69517330 | MS.gene84749:CDS | 35.0% | |
| ATCAACTATGGTTAAGAAGG+TGG | + | chr8.4:69517160-69517179 | MS.gene84749:CDS | 35.0% | |
| CATATCTTTCACAACTCTCA+AGG | + | chr8.4:69516159-69516178 | MS.gene84749:intron | 35.0% | |
| CTAAAAGTAGCCATTTGAGT+AGG | + | chr8.4:69516472-69516491 | MS.gene84749:intron | 35.0% | |
| GCTAAAGCCTAAAATAGACA+AGG | - | chr8.4:69516553-69516572 | None:intergenic | 35.0% | |
| GCTATAAAGTCTATTCCAGT+TGG | - | chr8.4:69517473-69517492 | None:intergenic | 35.0% | |
| GTACACCACACAAATATTCA+GGG | + | chr8.4:69515949-69515968 | MS.gene84749:intron | 35.0% | |
| GTCTTCTATAGAAGTAAACG+AGG | + | chr8.4:69517397-69517416 | MS.gene84749:CDS | 35.0% | |
| GTGAGTTTACCTTTCTCTTA+TGG | + | chr8.4:69517308-69517327 | MS.gene84749:CDS | 35.0% | |
| GTTTATGAAATCAACAGGAG+CGG | - | chr8.4:69515689-69515708 | None:intergenic | 35.0% | |
| TACAGCTCTGTTTATCTAGA+AGG | + | chr8.4:69516505-69516524 | MS.gene84749:intron | 35.0% | |
| TAGAAATAGGAAAGGGTGAT+CGG | - | chr8.4:69517495-69517514 | None:intergenic | 35.0% | |
| TCTATAGAAGTAAACGAGGA+AGG | + | chr8.4:69517401-69517420 | MS.gene84749:CDS | 35.0% | |
| TGAAACTTCTCGTATGATGA+AGG | + | chr8.4:69517277-69517296 | MS.gene84749:CDS | 35.0% | |
| TGTACACCACACAAATATTC+AGG | + | chr8.4:69515948-69515967 | MS.gene84749:intron | 35.0% | |
| TTATGCTTAATTGGCTAGGT+TGG | + | chr8.4:69516319-69516338 | MS.gene84749:intron | 35.0% | |
| TTTATGAAATCAACAGGAGC+GGG | - | chr8.4:69515688-69515707 | None:intergenic | 35.0% | |
| ! | CATGGATTGCAATGAAAAGA+GGG | - | chr8.4:69515734-69515753 | None:intergenic | 35.0% |
| ! | CGAAATTTGTTCCCTTTGTA+TGG | + | chr8.4:69516409-69516428 | MS.gene84749:intron | 35.0% |
| ! | GATAGTCCATCTTTTGCATT+TGG | - | chr8.4:69517143-69517162 | None:intergenic | 35.0% |
| ! | GATGATCGATGGATTTGAAA+CGG | - | chr8.4:69515507-69515526 | None:intergenic | 35.0% |
| !! | CACTGTATTTTAAAGGAGCA+TGG | + | chr8.4:69516928-69516947 | MS.gene84749:CDS | 35.0% |
| !! | CTTTTCCTTGTTTATAAGGC+AGG | - | chr8.4:69517088-69517107 | None:intergenic | 35.0% |
| !!! | ATGTTTTTTTGAGGCGATTC+AGG | + | chr8.4:69515975-69515994 | MS.gene84749:intron | 35.0% |
| !!! | TGTTTTTTTGAGGCGATTCA+GGG | + | chr8.4:69515976-69515995 | MS.gene84749:intron | 35.0% |
| ACTTGTTTGCAAGGAAGCTT+GGG | - | chr8.4:69517209-69517228 | None:intergenic | 40.0% | |
| AGAAAGGAGATGAGAGACAA+AGG | - | chr8.4:69515536-69515555 | None:intergenic | 40.0% | |
| AGGTTCTCAATCCTCTTGTT+GGG | + | chr8.4:69517555-69517574 | MS.gene84749:CDS | 40.0% | |
| ATCAGCCCTGAATATTTGTG+TGG | - | chr8.4:69515957-69515976 | None:intergenic | 40.0% | |
| ATGGTCAAACTGAGTCATAC+TGG | + | chr8.4:69516342-69516361 | MS.gene84749:intron | 40.0% | |
| GAAGGAAGGTTGAAGAGAAA+GGG | - | chr8.4:69515632-69515651 | None:intergenic | 40.0% | |
| GAATTGATGTTGGGAAGGTA+GGG | - | chr8.4:69516086-69516105 | None:intergenic | 40.0% | |
| GTCAAACCTCCATAAGAGAA+AGG | - | chr8.4:69517320-69517339 | None:intergenic | 40.0% | |
| GTTGGACGCAATAAAACAAG+AGG | - | chr8.4:69516663-69516682 | None:intergenic | 40.0% | |
| TCAAGGTTGCTGCTCATAAA+AGG | - | chr8.4:69517026-69517045 | None:intergenic | 40.0% | |
| TCTCGTATGATGAAGGAGTT+AGG | + | chr8.4:69517284-69517303 | MS.gene84749:CDS | 40.0% | |
| TGAAGGAAGGTTGAAGAGAA+AGG | - | chr8.4:69515633-69515652 | None:intergenic | 40.0% | |
| TGAATTGATGTTGGGAAGGT+AGG | - | chr8.4:69516087-69516106 | None:intergenic | 40.0% | |
| TGGAGGTTTGACAAAAATGG+TGG | + | chr8.4:69517328-69517347 | MS.gene84749:CDS | 40.0% | |
| TGGGCTGAAAAAGAGACAAA+TGG | + | chr8.4:69516840-69516859 | MS.gene84749:CDS | 40.0% | |
| ! | GCATGGATTGCAATGAAAAG+AGG | - | chr8.4:69515735-69515754 | None:intergenic | 40.0% |
| !! | AAAATGGTGGACTCTCTTGA+AGG | + | chr8.4:69517341-69517360 | MS.gene84749:CDS | 40.0% |
| !! | AACTGAGTCATACTGGTTCA+AGG | + | chr8.4:69516349-69516368 | MS.gene84749:intron | 40.0% |
| !!! | GTTTTTTTGAGGCGATTCAG+GGG | + | chr8.4:69515977-69515996 | MS.gene84749:intron | 40.0% |
| !!! | TCAGGGCTGATGTTTTTTTG+AGG | + | chr8.4:69515966-69515985 | MS.gene84749:intron | 40.0% |
| AAGAGGATTGAGAACCTGTC+CGG | - | chr8.4:69517552-69517571 | None:intergenic | 45.0% | |
| ACACACCATTGGCAAAAGAG+AGG | - | chr8.4:69515597-69515616 | None:intergenic | 45.0% | |
| ACCCAAACGATCATCTTTGC+CGG | + | chr8.4:69517530-69517549 | MS.gene84749:CDS | 45.0% | |
| AGGACAACTTGGAGAGACAA+TGG | - | chr8.4:69515427-69515446 | None:intergenic | 45.0% | |
| CAATGATGCTGAGGACAACT+TGG | - | chr8.4:69515438-69515457 | None:intergenic | 45.0% | |
| CACAACTCTCAAGGTGTAGA+TGG | + | chr8.4:69516168-69516187 | MS.gene84749:intron | 45.0% | |
| CACTTGTTTGCAAGGAAGCT+TGG | - | chr8.4:69517210-69517229 | None:intergenic | 45.0% | |
| CAGGTTCTCAATCCTCTTGT+TGG | + | chr8.4:69517554-69517573 | MS.gene84749:CDS | 45.0% | |
| CCTACTCTCACTTGTTTGCA+AGG | - | chr8.4:69517218-69517237 | None:intergenic | 45.0% | |
| CCTTGCAAACAAGTGAGAGT+AGG | + | chr8.4:69517215-69517234 | MS.gene84749:CDS | 45.0% | |
| CTACAGCCAATGCTGGAATA+GGG | + | chr8.4:69517435-69517454 | MS.gene84749:CDS | 45.0% | |
| CTTCGCCTGCCTTATAAACA+AGG | + | chr8.4:69517080-69517099 | MS.gene84749:CDS | 45.0% | |
| GGAGTAATCCATTTCCTCGT+TGG | + | chr8.4:69516949-69516968 | MS.gene84749:CDS | 45.0% | |
| GTAATCCATTTCCTCGTTGG+AGG | + | chr8.4:69516952-69516971 | MS.gene84749:CDS | 45.0% | |
| TACAGCCAATGCTGGAATAG+GGG | + | chr8.4:69517436-69517455 | MS.gene84749:CDS | 45.0% | |
| TATTCCAGTTGGCACACACA+TGG | - | chr8.4:69517462-69517481 | None:intergenic | 45.0% | |
| TATTTGCTTGTCCTCCAACG+AGG | - | chr8.4:69516966-69516985 | None:intergenic | 45.0% | |
| TCCGGCAAAGATGATCGTTT+GGG | - | chr8.4:69517534-69517553 | None:intergenic | 45.0% | |
| TGAGAAGAGATGTTTGGCGA+TGG | - | chr8.4:69515374-69515393 | None:intergenic | 45.0% | |
| ! | AACCGTGTCTGCCGATTATA+AGG | + | chr8.4:69515657-69515676 | MS.gene84749:CDS | 45.0% |
| ! | AGCCTTATAATCGGCAGACA+CGG | - | chr8.4:69515662-69515681 | None:intergenic | 45.0% |
| ! | CTCTTTTGCCAATGGTGTGT+GGG | + | chr8.4:69515597-69515616 | MS.gene84749:CDS | 45.0% |
| ! | GACACGGTTTCTTTGAAGGA+AGG | - | chr8.4:69515646-69515665 | None:intergenic | 45.0% |
| ! | GATCGATGGATTTGAAACGG+AGG | - | chr8.4:69515504-69515523 | None:intergenic | 45.0% |
| ! | GCTTAATTGGCTAGGTTGGA+TGG | + | chr8.4:69516323-69516342 | MS.gene84749:intron | 45.0% |
| ! | GGTTGGTGCTTGATTCATCA+AGG | - | chr8.4:69515333-69515352 | None:intergenic | 45.0% |
| ! | TCTCTTTTGCCAATGGTGTG+TGG | + | chr8.4:69515596-69515615 | MS.gene84749:CDS | 45.0% |
| !! | AGCGGGAGTAGCCTTATAAT+CGG | - | chr8.4:69515671-69515690 | None:intergenic | 45.0% |
| AAAAGAGAGGCGAGGACCAT+CGG | - | chr8.4:69515584-69515603 | None:intergenic | 50.0% | |
| AAAGACGCAGCTTCTTCCGA+TGG | + | chr8.4:69515565-69515584 | MS.gene84749:CDS | 50.0% | |
| AACGATCATCTTTGCCGGAC+AGG | + | chr8.4:69517535-69517554 | MS.gene84749:CDS | 50.0% | |
| AAGCTGTCAACTGACCCTTG+AGG | - | chr8.4:69516885-69516904 | None:intergenic | 50.0% | |
| AGAGATGTTTGGCGATGGTG+AGG | - | chr8.4:69515369-69515388 | None:intergenic | 50.0% | |
| CTGGTTCAAGGTTGAACCGA+CGG | + | chr8.4:69516361-69516380 | MS.gene84749:intron | 50.0% | |
| CTTGTCCTCCAACGAGGAAA+TGG | - | chr8.4:69516960-69516979 | None:intergenic | 50.0% | |
| GAGATGTTTGGCGATGGTGA+GGG | - | chr8.4:69515368-69515387 | None:intergenic | 50.0% | |
| GAGGGAAACTTTCGCTTGGT+TGG | - | chr8.4:69515350-69515369 | None:intergenic | 50.0% | |
| GCTACAGCCAATGCTGGAAT+AGG | + | chr8.4:69517434-69517453 | MS.gene84749:CDS | 50.0% | |
| GGCAGACACGGTTTCTTTGA+AGG | - | chr8.4:69515650-69515669 | None:intergenic | 50.0% | |
| GTCCGGCAAAGATGATCGTT+TGG | - | chr8.4:69517535-69517554 | None:intergenic | 50.0% | |
| TGACTGAGCTGCCATTCAGA+AGG | - | chr8.4:69516998-69517017 | None:intergenic | 50.0% | |
| TGGTGAGGGAAACTTTCGCT+TGG | - | chr8.4:69515354-69515373 | None:intergenic | 50.0% | |
| TTTCTCCACCCACACACCAT+TGG | - | chr8.4:69515608-69515627 | None:intergenic | 50.0% | |
| ! | AAGAAGCTGCGTCTTTGAGG+AGG | - | chr8.4:69515561-69515580 | None:intergenic | 50.0% |
| ! | CGTCTTTGAGGAGGACAGAA+AGG | - | chr8.4:69515552-69515571 | None:intergenic | 50.0% |
| ! | TTTTGCCAATGGTGTGTGGG+TGG | + | chr8.4:69515600-69515619 | MS.gene84749:CDS | 50.0% |
| !! | ATCATTGCTGCTGGCTCTGA+CGG | + | chr8.4:69515451-69515470 | MS.gene84749:CDS | 50.0% |
| AGCCAGCAGCAATGATGCTG+AGG | - | chr8.4:69515447-69515466 | None:intergenic | 55.0% | |
| CATGGCCCCTATTCCAGCAT+TGG | - | chr8.4:69517444-69517463 | None:intergenic | 55.0% | |
| CCATTGGCAAAAGAGAGGCG+AGG | - | chr8.4:69515592-69515611 | None:intergenic | 55.0% | |
| CGGAAGAAGCTGCGTCTTTG+AGG | - | chr8.4:69515564-69515583 | None:intergenic | 55.0% | |
| GAAGCTGCTACAGCCAATGC+TGG | + | chr8.4:69517428-69517447 | MS.gene84749:CDS | 55.0% | |
| GTCCTCAGCATCATTGCTGC+TGG | + | chr8.4:69515442-69515461 | MS.gene84749:CDS | 55.0% | |
| TGCAAGGAAGCTTGGGCTCT+AGG | - | chr8.4:69517202-69517221 | None:intergenic | 55.0% | |
| ! | CCTCGCCTCTCTTTTGCCAA+TGG | + | chr8.4:69515589-69515608 | MS.gene84749:CDS | 55.0% |
| GGGGCCATGTGTGTGCCAAC+TGG | + | chr8.4:69517455-69517474 | MS.gene84749:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 69515322 | 69517580 | 69515322 | ID=MS.gene84749 |
| chr8.4 | mRNA | 69515322 | 69517580 | 69515322 | ID=MS.gene84749.t1;Parent=MS.gene84749 |
| chr8.4 | exon | 69515322 | 69515711 | 69515322 | ID=MS.gene84749.t1.exon1;Parent=MS.gene84749.t1 |
| chr8.4 | CDS | 69515322 | 69515711 | 69515322 | ID=cds.MS.gene84749.t1;Parent=MS.gene84749.t1 |
| chr8.4 | exon | 69516810 | 69517580 | 69516810 | ID=MS.gene84749.t1.exon2;Parent=MS.gene84749.t1 |
| chr8.4 | CDS | 69516810 | 69517580 | 69516810 | ID=cds.MS.gene84749.t1;Parent=MS.gene84749.t1 |
| Gene Sequence |
| Protein sequence |
