Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84752.t1 | XP_013444598.1 | 84.7 | 393 | 60 | 0 | 20 | 412 | 5 | 397 | 2.60E-184 | 654.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84752.t1 | Q9S7T8 | 54.8 | 389 | 163 | 5 | 32 | 410 | 5 | 390 | 1.7e-115 | 417.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84752.t1 | A0A072TP44 | 84.7 | 393 | 60 | 0 | 20 | 412 | 5 | 397 | 1.9e-184 | 654.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene84752 | MS.gene065944 | PPI |
| MS.gene065945 | MS.gene84752 | PPI |
| MS.gene84752 | MS.gene031697 | PPI |
| MS.gene006610 | MS.gene84752 | PPI |
| MS.gene84752 | MS.gene045585 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84752.t1 | MTR_8g027395 | 84.733 | 393 | 60 | 0 | 20 | 412 | 5 | 397 | 0.0 | 676 |
| MS.gene84752.t1 | MTR_8g027420 | 84.715 | 386 | 48 | 1 | 27 | 412 | 1 | 375 | 0.0 | 655 |
| MS.gene84752.t1 | MTR_4g088535 | 75.591 | 381 | 77 | 2 | 31 | 411 | 6 | 370 | 0.0 | 565 |
| MS.gene84752.t1 | MTR_4g088525 | 75.623 | 361 | 88 | 0 | 51 | 411 | 8 | 368 | 0.0 | 551 |
| MS.gene84752.t1 | MTR_3g018740 | 72.917 | 384 | 101 | 2 | 30 | 410 | 3 | 386 | 0.0 | 538 |
| MS.gene84752.t1 | MTR_3g101010 | 71.059 | 387 | 108 | 1 | 30 | 412 | 3 | 389 | 0.0 | 536 |
| MS.gene84752.t1 | MTR_4g045707 | 68.668 | 383 | 118 | 2 | 32 | 412 | 6 | 388 | 0.0 | 514 |
| MS.gene84752.t1 | MTR_2g045980 | 66.408 | 387 | 121 | 3 | 30 | 410 | 3 | 386 | 6.48e-176 | 496 |
| MS.gene84752.t1 | MTR_2g046030 | 65.633 | 387 | 124 | 3 | 30 | 410 | 3 | 386 | 2.65e-173 | 489 |
| MS.gene84752.t1 | MTR_3g048000 | 62.592 | 409 | 125 | 5 | 6 | 411 | 8 | 391 | 4.10e-173 | 489 |
| MS.gene84752.t1 | MTR_3g101180 | 64.975 | 394 | 124 | 4 | 32 | 411 | 6 | 399 | 1.35e-170 | 483 |
| MS.gene84752.t1 | MTR_3g101030 | 62.044 | 411 | 127 | 6 | 24 | 412 | 26 | 429 | 2.29e-170 | 484 |
| MS.gene84752.t1 | MTR_8g461160 | 64.083 | 387 | 131 | 2 | 32 | 410 | 6 | 392 | 1.96e-169 | 480 |
| MS.gene84752.t1 | MTR_7g050810 | 60.794 | 403 | 148 | 3 | 18 | 412 | 4 | 404 | 6.35e-167 | 474 |
| MS.gene84752.t1 | MTR_3g101130 | 61.832 | 393 | 139 | 3 | 27 | 412 | 1 | 389 | 1.55e-164 | 468 |
| MS.gene84752.t1 | MTR_7g451890 | 60.102 | 391 | 148 | 2 | 30 | 412 | 12 | 402 | 4.26e-162 | 462 |
| MS.gene84752.t1 | MTR_7g050750 | 60.358 | 391 | 147 | 2 | 30 | 412 | 6 | 396 | 5.47e-162 | 461 |
| MS.gene84752.t1 | MTR_7g047780 | 60.614 | 391 | 146 | 2 | 30 | 412 | 12 | 402 | 2.31e-161 | 460 |
| MS.gene84752.t1 | MTR_3g101050 | 62.663 | 383 | 120 | 5 | 34 | 410 | 31 | 396 | 9.64e-153 | 438 |
| MS.gene84752.t1 | MTR_3g015620 | 56.968 | 409 | 125 | 6 | 18 | 410 | 5 | 378 | 1.11e-146 | 422 |
| MS.gene84752.t1 | MTR_3g102920 | 56.098 | 410 | 136 | 6 | 10 | 411 | 36 | 409 | 2.00e-141 | 409 |
| MS.gene84752.t1 | MTR_3g101200 | 55.670 | 388 | 141 | 5 | 30 | 411 | 29 | 391 | 3.34e-132 | 385 |
| MS.gene84752.t1 | MTR_3g101190 | 56.825 | 359 | 96 | 3 | 54 | 412 | 13 | 312 | 1.31e-127 | 370 |
| MS.gene84752.t1 | MTR_3g100995 | 66.016 | 256 | 82 | 3 | 160 | 412 | 11 | 264 | 4.07e-115 | 337 |
| MS.gene84752.t1 | MTR_3g100010 | 58.710 | 310 | 80 | 2 | 57 | 333 | 42 | 336 | 8.59e-115 | 339 |
| MS.gene84752.t1 | MTR_3g018747 | 66.795 | 259 | 68 | 3 | 156 | 410 | 9 | 253 | 1.08e-112 | 330 |
| MS.gene84752.t1 | MTR_7g050830 | 53.628 | 317 | 114 | 3 | 30 | 324 | 14 | 319 | 1.69e-108 | 322 |
| MS.gene84752.t1 | MTR_3g015760 | 58.571 | 280 | 106 | 5 | 137 | 410 | 4 | 279 | 2.07e-97 | 293 |
| MS.gene84752.t1 | MTR_3g114310 | 44.473 | 389 | 197 | 10 | 39 | 412 | 26 | 410 | 2.34e-92 | 284 |
| MS.gene84752.t1 | MTR_3g100520 | 66.972 | 218 | 61 | 4 | 197 | 412 | 1 | 209 | 4.32e-92 | 276 |
| MS.gene84752.t1 | MTR_3g101110 | 58.996 | 239 | 64 | 4 | 156 | 386 | 68 | 280 | 2.15e-85 | 262 |
| MS.gene84752.t1 | MTR_3g111160 | 66.341 | 205 | 66 | 2 | 211 | 412 | 16 | 220 | 7.86e-85 | 258 |
| MS.gene84752.t1 | MTR_3g099970 | 66.327 | 196 | 49 | 2 | 156 | 351 | 20 | 198 | 7.30e-83 | 252 |
| MS.gene84752.t1 | MTR_2g046410 | 62.037 | 216 | 73 | 3 | 201 | 410 | 135 | 347 | 1.33e-80 | 252 |
| MS.gene84752.t1 | MTR_3g102870 | 64.596 | 161 | 57 | 0 | 219 | 379 | 1 | 161 | 4.21e-67 | 211 |
| MS.gene84752.t1 | MTR_3g111150 | 61.850 | 173 | 42 | 2 | 35 | 207 | 2 | 150 | 4.75e-66 | 208 |
| MS.gene84752.t1 | MTR_3g101020 | 55.376 | 186 | 54 | 3 | 230 | 412 | 1 | 160 | 9.00e-60 | 192 |
| MS.gene84752.t1 | MTR_3g101150 | 60.759 | 158 | 54 | 1 | 262 | 411 | 1 | 158 | 2.23e-56 | 183 |
| MS.gene84752.t1 | MTR_3g100990 | 64.667 | 150 | 52 | 1 | 32 | 181 | 5 | 153 | 7.28e-54 | 187 |
| MS.gene84752.t1 | MTR_4g093550 | 66.292 | 89 | 30 | 0 | 27 | 115 | 1 | 89 | 6.66e-34 | 122 |
| MS.gene84752.t1 | MTR_6g046890 | 66.197 | 71 | 24 | 0 | 40 | 110 | 7 | 77 | 1.11e-21 | 90.9 |
| MS.gene84752.t1 | MTR_3g101140 | 57.971 | 69 | 24 | 1 | 349 | 412 | 48 | 116 | 1.11e-15 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84752.t1 | AT1G47710 | 54.756 | 389 | 163 | 5 | 32 | 410 | 5 | 390 | 2.00e-147 | 424 |
| MS.gene84752.t1 | AT1G47710 | 54.271 | 398 | 167 | 6 | 25 | 410 | 23 | 417 | 1.27e-146 | 423 |
| MS.gene84752.t1 | AT2G25240 | 50.388 | 387 | 178 | 8 | 30 | 409 | 3 | 382 | 2.81e-125 | 367 |
| MS.gene84752.t1 | AT3G45220 | 46.923 | 390 | 195 | 4 | 30 | 409 | 3 | 390 | 9.51e-123 | 361 |
| MS.gene84752.t1 | AT2G26390 | 48.338 | 391 | 184 | 8 | 30 | 409 | 3 | 386 | 4.34e-119 | 352 |
| MS.gene84752.t1 | AT1G64030 | 42.784 | 388 | 191 | 5 | 32 | 409 | 5 | 371 | 1.03e-98 | 300 |
| MS.gene84752.t1 | AT1G62170 | 40.909 | 396 | 200 | 6 | 26 | 409 | 58 | 431 | 3.50e-98 | 300 |
| MS.gene84752.t1 | AT2G14540 | 44.279 | 402 | 188 | 8 | 19 | 409 | 21 | 397 | 4.16e-98 | 299 |
| MS.gene84752.t1 | AT1G62170 | 38.228 | 429 | 198 | 8 | 26 | 409 | 58 | 464 | 3.03e-91 | 283 |
| MS.gene84752.t1 | AT2G35580 | 40.796 | 402 | 195 | 8 | 17 | 409 | 4 | 371 | 2.04e-89 | 275 |
| MS.gene84752.t1 | AT1G64010 | 45.370 | 216 | 94 | 4 | 197 | 409 | 1 | 195 | 1.54e-58 | 190 |
| MS.gene84752.t1 | AT1G64010 | 45.274 | 201 | 86 | 4 | 212 | 409 | 2 | 181 | 5.53e-53 | 175 |
| MS.gene84752.t1 | AT1G63280 | 53.390 | 118 | 51 | 2 | 153 | 268 | 5 | 120 | 1.06e-33 | 122 |
| MS.gene84752.t1 | AT1G62160 | 38.068 | 176 | 88 | 4 | 236 | 409 | 62 | 218 | 9.93e-33 | 123 |
| MS.gene84752.t1 | AT1G51330 | 53.571 | 112 | 49 | 3 | 154 | 262 | 29 | 140 | 1.51e-26 | 105 |
| MS.gene84752.t1 | AT1G64020 | 34.211 | 114 | 68 | 4 | 37 | 146 | 10 | 120 | 3.99e-12 | 63.5 |
Find 87 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACTAAAGAAGTGAATTTA+TGG | 0.193244 | 8.4:+69502967 | MS.gene84752:CDS |
| CTCAAAGATGCTGGTTCTTC+TGG | 0.228151 | 8.4:+69502124 | MS.gene84752:CDS |
| GTGAGTTTACCTTTCTCTTC+TGG | 0.237208 | 8.4:+69503455 | MS.gene84752:CDS |
| CCGTTTGTTGATTGAATCAT+AGG | 0.269822 | 8.4:-69501813 | None:intergenic |
| TCAAGGTTGCTGCTCATAAA+AGG | 0.311002 | 8.4:-69503170 | None:intergenic |
| AACCGTGTCTGCTGATTATA+AGG | 0.316130 | 8.4:+69502219 | MS.gene84752:CDS |
| CATCAAAAGCACTAATAAAT+TGG | 0.340023 | 8.4:-69503193 | None:intergenic |
| ACCCAGGAAATCCTCTTTGC+AGG | 0.342039 | 8.4:+69503677 | MS.gene84752:CDS |
| CCAAATGAAAATTTGAATCT+TGG | 0.344733 | 8.4:-69503398 | None:intergenic |
| CTTGTCCTCCAATCAGGAAA+TGG | 0.360927 | 8.4:-69503104 | None:intergenic |
| TATTTGCTTGTCCTCCAATC+AGG | 0.391025 | 8.4:-69503110 | None:intergenic |
| GTCCTGCAAAGAGGATTTCC+TGG | 0.393345 | 8.4:-69503679 | None:intergenic |
| CAAGTTCTCAATCCTCTTGT+TGG | 0.402792 | 8.4:+69503701 | MS.gene84752:CDS |
| ATCATTGCTGCTGGCTCTGA+GGG | 0.408699 | 8.4:+69502013 | MS.gene84752:CDS |
| GGAGTAATCCATTTCCTGAT+TGG | 0.409426 | 8.4:+69503096 | MS.gene84752:CDS |
| AAACGGAAAAGAACGGTTCT+TGG | 0.412748 | 8.4:+69501830 | MS.gene84752:CDS |
| GAAGCTGCTGCGACCAATGC+TGG | 0.415030 | 8.4:+69503575 | MS.gene84752:CDS |
| CAAAGTAACATACCTTGTTC+AGG | 0.425889 | 8.4:-69502264 | None:intergenic |
| AAGTTCTCAATCCTCTTGTT+GGG | 0.429816 | 8.4:+69503702 | MS.gene84752:CDS |
| GAGGGAAACTTTCTCTTGGT+TGG | 0.441023 | 8.4:-69501909 | None:intergenic |
| TCTCGTATGATGAAGGAGTT+AGG | 0.442586 | 8.4:+69503431 | MS.gene84752:CDS |
| CTCTTTCGCCAATGGTGTGT+GGG | 0.444711 | 8.4:+69502159 | MS.gene84752:CDS |
| GCTATAAAGTCTATTCCTCT+TGG | 0.447224 | 8.4:-69503617 | None:intergenic |
| CCTCGCCTCTCTTTCGCCAA+TGG | 0.447900 | 8.4:+69502151 | MS.gene84752:CDS |
| GTTCTCAGCATCATTGCTGC+TGG | 0.450530 | 8.4:+69502004 | MS.gene84752:CDS |
| GACTAAAGAAGTGAATTTAT+GGG | 0.454605 | 8.4:+69502968 | MS.gene84752:CDS |
| AGCAGACACGGTTTCTTTGA+AGG | 0.460069 | 8.4:-69502209 | None:intergenic |
| TCTGTCCTCCTCAAAGATGC+TGG | 0.461129 | 8.4:+69502115 | MS.gene84752:CDS |
| TCTCTAATTAGAAATAGAAA+AGG | 0.472534 | 8.4:-69503647 | None:intergenic |
| TTAAAGAAATTCTTCCTCAA+GGG | 0.477536 | 8.4:+69503015 | MS.gene84752:CDS |
| TCCTGCAAAGAGGATTTCCT+GGG | 0.477931 | 8.4:-69503678 | None:intergenic |
| CAGAAGAACCAGCATCTTTG+AGG | 0.481080 | 8.4:-69502123 | None:intergenic |
| TAAGGCCACTTTGTCTTCTG+TGG | 0.483558 | 8.4:+69502237 | MS.gene84752:CDS |
| CTTCGTCTTCCTTATAAACA+AGG | 0.483822 | 8.4:+69503227 | MS.gene84752:CDS |
| CATCATTGCTGCTGGCTCTG+AGG | 0.484489 | 8.4:+69502012 | MS.gene84752:CDS |
| AAAATGGTGGACTCTCTTGA+AGG | 0.485242 | 8.4:+69503488 | MS.gene84752:CDS |
| ATTAAAGAAATTCTTCCTCA+AGG | 0.489087 | 8.4:+69503014 | MS.gene84752:CDS |
| GAAGGAAGGTTGAAGACAAA+GGG | 0.489318 | 8.4:-69502191 | None:intergenic |
| CATCTTTGAGGAGGACAGAA+AGG | 0.490209 | 8.4:-69502111 | None:intergenic |
| CAAGGCCACCTTTCCAGCAT+TGG | 0.492356 | 8.4:-69503588 | None:intergenic |
| GAAAGACTTGTGAAATATGT+TGG | 0.499945 | 8.4:-69503528 | None:intergenic |
| TGGTGAGGGAAACTTTCTCT+TGG | 0.501123 | 8.4:-69501913 | None:intergenic |
| GTCAAACCTCCAGAAGAGAA+AGG | 0.505347 | 8.4:-69503464 | None:intergenic |
| GATCAGTGGATTTGAAATGA+AGG | 0.520613 | 8.4:-69502063 | None:intergenic |
| CTCTAATTAGAAATAGAAAA+GGG | 0.520858 | 8.4:-69503646 | None:intergenic |
| AGAGATGTTTGGCGATGGTG+AGG | 0.524270 | 8.4:-69501928 | None:intergenic |
| CCTATGATTCAATCAACAAA+CGG | 0.529514 | 8.4:+69501813 | MS.gene84752:CDS |
| AGTTTACCTTTCTCTTCTGG+AGG | 0.529550 | 8.4:+69503458 | MS.gene84752:CDS |
| GACACGGTTTCTTTGAAGGA+AGG | 0.534452 | 8.4:-69502205 | None:intergenic |
| CGTTTGTTGATTGAATCATA+GGG | 0.535660 | 8.4:-69501812 | None:intergenic |
| TCTCTTTCGCCAATGGTGTG+TGG | 0.536811 | 8.4:+69502158 | MS.gene84752:CDS |
| CAATGATGCTGAGAACAACT+TGG | 0.536897 | 8.4:-69501997 | None:intergenic |
| GGTTGGTGCTTGATTCATCA+AGG | 0.538609 | 8.4:-69501892 | None:intergenic |
| GTAATCCATTTCCTGATTGG+AGG | 0.543900 | 8.4:+69503099 | MS.gene84752:CDS |
| TTCTGTGGATTTCCTGAACA+AGG | 0.543973 | 8.4:+69502252 | MS.gene84752:CDS |
| TGCTGCGACCAATGCTGGAA+AGG | 0.551218 | 8.4:+69503580 | MS.gene84752:CDS |
| AAAGATGCTGGTTCTTCTGG+TGG | 0.555221 | 8.4:+69502127 | MS.gene84752:CDS |
| TGAAACTTCTCGTATGATGA+AGG | 0.556652 | 8.4:+69503424 | MS.gene84752:CDS |
| TGAAGGAAGGTTGAAGACAA+AGG | 0.562109 | 8.4:-69502192 | None:intergenic |
| TCGAGAAGCTGTTGTTGAGT+AGG | 0.564349 | 8.4:-69502037 | None:intergenic |
| AGAAGAAGAGGAACAAACAT+TGG | 0.565610 | 8.4:+69501865 | MS.gene84752:CDS |
| TTCATTGAAGTAAACGAGGA+AGG | 0.566637 | 8.4:+69503548 | MS.gene84752:CDS |
| TGACTGAGCTGCCATTCAGA+AGG | 0.569757 | 8.4:-69503142 | None:intergenic |
| GAGATGTTTGGCGATGGTGA+GGG | 0.570302 | 8.4:-69501927 | None:intergenic |
| GAAATATGTTGGAAACAGAA+AGG | 0.576851 | 8.4:-69503517 | None:intergenic |
| TGCGACCAATGCTGGAAAGG+TGG | 0.580090 | 8.4:+69503583 | MS.gene84752:CDS |
| TGATGAATCAAAAGAAGAAG+AGG | 0.583126 | 8.4:+69501853 | MS.gene84752:CDS |
| TGAGAACTTGTCCTGCAAAG+AGG | 0.585568 | 8.4:-69503688 | None:intergenic |
| AAGCACTAATAAATTGGTCA+AGG | 0.591221 | 8.4:-69503187 | None:intergenic |
| AAAAGATGGACTATCAGCTA+TGG | 0.594662 | 8.4:+69503295 | MS.gene84752:CDS |
| AGTTAAGATCACCCAACAAG+AGG | 0.599430 | 8.4:-69503713 | None:intergenic |
| ACTATCAGCTATGGTTGAGA+AGG | 0.605629 | 8.4:+69503304 | MS.gene84752:CDS |
| AAAAGAGTTGAGATGATCAG+TGG | 0.610674 | 8.4:-69502077 | None:intergenic |
| GGCCTTATAATCAGCAGACA+CGG | 0.613730 | 8.4:-69502221 | None:intergenic |
| ACACACCATTGGCGAAAGAG+AGG | 0.625171 | 8.4:-69502156 | None:intergenic |
| TTTCGCCAATGGTGTGTGGG+TGG | 0.626286 | 8.4:+69502162 | MS.gene84752:CDS |
| AGAACAACTTGGAGAGACAA+TGG | 0.632240 | 8.4:-69501986 | None:intergenic |
| AATCAACAAACGGAAAAGAA+CGG | 0.637048 | 8.4:+69501823 | MS.gene84752:CDS |
| GAAATCCACAGAAGACAAAG+TGG | 0.650231 | 8.4:-69502242 | None:intergenic |
| AATTAGAGAAGATTCGACCC+AGG | 0.652619 | 8.4:+69503661 | MS.gene84752:CDS |
| TGAGAAGAGATGTTTGGCGA+TGG | 0.659173 | 8.4:-69501933 | None:intergenic |
| AAGAACCAGCATCTTTGAGG+AGG | 0.661311 | 8.4:-69502120 | None:intergenic |
| GTCTTTCATTGAAGTAAACG+AGG | 0.668981 | 8.4:+69503544 | MS.gene84752:CDS |
| TATTCCTCTTGGAATACACA+AGG | 0.692487 | 8.4:-69503606 | None:intergenic |
| GTGGCCTTGTGTATTCCAAG+AGG | 0.698635 | 8.4:+69503602 | MS.gene84752:CDS |
| AAGCTGTCAACTGACCCTTG+AGG | 0.752414 | 8.4:-69503029 | None:intergenic |
| CCATTGGCGAAAGAGAGGCG+AGG | 0.781616 | 8.4:-69502151 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAATTTGATATGTTTTAA+AGG | + | chr8.4:69502935-69502954 | MS.gene84752:intron | 10.0% |
| !!! | TTTCAAATTTGATGTTTTAA+AGG | + | chr8.4:69502888-69502907 | MS.gene84752:intron | 15.0% |
| !! | CTCTAATTAGAAATAGAAAA+GGG | - | chr8.4:69503649-69503668 | None:intergenic | 20.0% |
| !! | TCTCTAATTAGAAATAGAAA+AGG | - | chr8.4:69503650-69503669 | None:intergenic | 20.0% |
| !! | TGTAAAATAGTCATTTGAAT+AGG | + | chr8.4:69502613-69502632 | MS.gene84752:intron | 20.0% |
| !!! | AATGCATTTCTTGAAATTTT+TGG | + | chr8.4:69502337-69502356 | MS.gene84752:intron | 20.0% |
| !!! | CAAGATTCAAATTTTCATTT+GGG | + | chr8.4:69503399-69503418 | MS.gene84752:CDS | 20.0% |
| !!! | TTATCTTTTCCTTGTTTATA+AGG | - | chr8.4:69503239-69503258 | None:intergenic | 20.0% |
| ! | ACATTTGTGTTTATCTAGAA+GGG | + | chr8.4:69502647-69502666 | MS.gene84752:intron | 25.0% |
| ! | ATTAAAGAAATTCTTCCTCA+AGG | + | chr8.4:69503014-69503033 | MS.gene84752:CDS | 25.0% |
| ! | CCAAATGAAAATTTGAATCT+TGG | - | chr8.4:69503401-69503420 | None:intergenic | 25.0% |
| ! | GACTAAAGAAGTGAATTTAT+GGG | + | chr8.4:69502968-69502987 | MS.gene84752:CDS | 25.0% |
| ! | TACATTTGTGTTTATCTAGA+AGG | + | chr8.4:69502646-69502665 | MS.gene84752:intron | 25.0% |
| ! | TGACTAAAGAAGTGAATTTA+TGG | + | chr8.4:69502967-69502986 | MS.gene84752:CDS | 25.0% |
| ! | TGTGACACAATTATAATACA+TGG | - | chr8.4:69502315-69502334 | None:intergenic | 25.0% |
| ! | TTAAAGAAATTCTTCCTCAA+GGG | + | chr8.4:69503015-69503034 | MS.gene84752:CDS | 25.0% |
| ! | TTGGATGCTAAAAAACAAAA+AGG | - | chr8.4:69502764-69502783 | None:intergenic | 25.0% |
| ! | TTTCTTCCAAATGAAAAAGA+TGG | + | chr8.4:69503281-69503300 | MS.gene84752:CDS | 25.0% |
| !! | AGTCTAATTTTCACATACTA+CGG | - | chr8.4:69502798-69502817 | None:intergenic | 25.0% |
| !! | CAATTTATTAGTGCTTTTGA+TGG | + | chr8.4:69503194-69503213 | MS.gene84752:CDS | 25.0% |
| !! | CCAAGATTCAAATTTTCATT+TGG | + | chr8.4:69503398-69503417 | MS.gene84752:CDS | 25.0% |
| !!! | AATGTTTGTTATTTTACCCT+TGG | + | chr8.4:69502467-69502486 | MS.gene84752:intron | 25.0% |
| !!! | CATCAAAAGCACTAATAAAT+TGG | - | chr8.4:69503196-69503215 | None:intergenic | 25.0% |
| !!! | GCTAATGCATTGTATTTTAA+AGG | + | chr8.4:69503068-69503087 | MS.gene84752:CDS | 25.0% |
| AAGCACTAATAAATTGGTCA+AGG | - | chr8.4:69503190-69503209 | None:intergenic | 30.0% | |
| AAGCTTCCGTATAAAAAAGT+AGG | + | chr8.4:69503356-69503375 | MS.gene84752:CDS | 30.0% | |
| AATCAACAAACGGAAAAGAA+CGG | + | chr8.4:69501823-69501842 | MS.gene84752:CDS | 30.0% | |
| CCTATGATTCAATCAACAAA+CGG | + | chr8.4:69501813-69501832 | MS.gene84752:CDS | 30.0% | |
| GAAAGACTTGTGAAATATGT+TGG | - | chr8.4:69503531-69503550 | None:intergenic | 30.0% | |
| GAAATATGTTGGAAACAGAA+AGG | - | chr8.4:69503520-69503539 | None:intergenic | 30.0% | |
| GTTTATCTAGAAGGGAAAAA+AGG | + | chr8.4:69502655-69502674 | MS.gene84752:intron | 30.0% | |
| TGATGAATCAAAAGAAGAAG+AGG | + | chr8.4:69501853-69501872 | MS.gene84752:CDS | 30.0% | |
| TGCTAAAAAACAAAAAGGAG+AGG | - | chr8.4:69502759-69502778 | None:intergenic | 30.0% | |
| TGCTTCTTCAAAAGAATGAA+AGG | + | chr8.4:69502590-69502609 | MS.gene84752:intron | 30.0% | |
| TTAATCTTTCCATTTCATCC+TGG | + | chr8.4:69502512-69502531 | MS.gene84752:intron | 30.0% | |
| ! | CGTTTGTTGATTGAATCATA+GGG | - | chr8.4:69501815-69501834 | None:intergenic | 30.0% |
| ! | GTCTAATTTTCACATACTAC+GGG | - | chr8.4:69502797-69502816 | None:intergenic | 30.0% |
| ! | TATGATTTTCACCTTCTGAA+TGG | + | chr8.4:69503131-69503150 | MS.gene84752:CDS | 30.0% |
| ! | TCTAATTTTCACATACTACG+GGG | - | chr8.4:69502796-69502815 | None:intergenic | 30.0% |
| !! | CATTGTATTTTAAAGGAGCA+TGG | + | chr8.4:69503075-69503094 | MS.gene84752:CDS | 30.0% |
| !! | GATAGTCCATCTTTTTCATT+TGG | - | chr8.4:69503290-69503309 | None:intergenic | 30.0% |
| !! | TTCTTTTGAGAAGAGATGTT+TGG | - | chr8.4:69501942-69501961 | None:intergenic | 30.0% |
| !!! | CCTACTCCTACTTTTTTATA+CGG | - | chr8.4:69503365-69503384 | None:intergenic | 30.0% |
| !!! | CTGTTACTCTAGAATCATTT+TGG | - | chr8.4:69502725-69502744 | None:intergenic | 30.0% |
| !!! | CTTGCACTTGCTTTTTTAAA+TGG | + | chr8.4:69502391-69502410 | MS.gene84752:intron | 30.0% |
| !!! | GTAGTTTTTTTCCTCTGTAT+AGG | + | chr8.4:69502551-69502570 | MS.gene84752:intron | 30.0% |
| AAAAGAGTTGAGATGATCAG+TGG | - | chr8.4:69502080-69502099 | None:intergenic | 35.0% | |
| AAGTTCTCAATCCTCTTGTT+GGG | + | chr8.4:69503702-69503721 | MS.gene84752:CDS | 35.0% | |
| AGAAGAAGAGGAACAAACAT+TGG | + | chr8.4:69501865-69501884 | MS.gene84752:CDS | 35.0% | |
| CAAAGTAACATACCTTGTTC+AGG | - | chr8.4:69502267-69502286 | None:intergenic | 35.0% | |
| CCGTATAAAAAAGTAGGAGT+AGG | + | chr8.4:69503362-69503381 | MS.gene84752:CDS | 35.0% | |
| CTTCGTCTTCCTTATAAACA+AGG | + | chr8.4:69503227-69503246 | MS.gene84752:CDS | 35.0% | |
| GCTATAAAGTCTATTCCTCT+TGG | - | chr8.4:69503620-69503639 | None:intergenic | 35.0% | |
| GTCTTTCATTGAAGTAAACG+AGG | + | chr8.4:69503544-69503563 | MS.gene84752:CDS | 35.0% | |
| TAGTTGTTAACGATGCTAAC+TGG | + | chr8.4:69502430-69502449 | MS.gene84752:intron | 35.0% | |
| TATTCCTCTTGGAATACACA+AGG | - | chr8.4:69503609-69503628 | None:intergenic | 35.0% | |
| TGAAACTTCTCGTATGATGA+AGG | + | chr8.4:69503424-69503443 | MS.gene84752:CDS | 35.0% | |
| TTAACGATGCTAACTGGATT+TGG | + | chr8.4:69502436-69502455 | MS.gene84752:intron | 35.0% | |
| TTCATTGAAGTAAACGAGGA+AGG | + | chr8.4:69503548-69503567 | MS.gene84752:CDS | 35.0% | |
| ! | CCGTTTGTTGATTGAATCAT+AGG | - | chr8.4:69501816-69501835 | None:intergenic | 35.0% |
| ! | GATCAGTGGATTTGAAATGA+AGG | - | chr8.4:69502066-69502085 | None:intergenic | 35.0% |
| ! | TTCTGGAGGTTTGACAAAAA+TGG | + | chr8.4:69503472-69503491 | MS.gene84752:CDS | 35.0% |
| !! | AAAAGATGGACTATCAGCTA+TGG | + | chr8.4:69503295-69503314 | MS.gene84752:CDS | 35.0% |
| !!! | TTGTTATTTTACCCTTGGTC+TGG | + | chr8.4:69502472-69502491 | MS.gene84752:intron | 35.0% |
| AAACGGAAAAGAACGGTTCT+TGG | + | chr8.4:69501830-69501849 | MS.gene84752:CDS | 40.0% | |
| AATTAGAGAAGATTCGACCC+AGG | + | chr8.4:69503661-69503680 | MS.gene84752:CDS | 40.0% | |
| ACAAGCTAAGTCCTATACAG+AGG | - | chr8.4:69502565-69502584 | None:intergenic | 40.0% | |
| ACTATCAGCTATGGTTGAGA+AGG | + | chr8.4:69503304-69503323 | MS.gene84752:CDS | 40.0% | |
| AGAACAACTTGGAGAGACAA+TGG | - | chr8.4:69501989-69502008 | None:intergenic | 40.0% | |
| AGTTTACCTTTCTCTTCTGG+AGG | + | chr8.4:69503458-69503477 | MS.gene84752:CDS | 40.0% | |
| CAAGTTCTCAATCCTCTTGT+TGG | + | chr8.4:69503701-69503720 | MS.gene84752:CDS | 40.0% | |
| CAATGATGCTGAGAACAACT+TGG | - | chr8.4:69502000-69502019 | None:intergenic | 40.0% | |
| GAAATCCACAGAAGACAAAG+TGG | - | chr8.4:69502245-69502264 | None:intergenic | 40.0% | |
| GAAGGAAGGTTGAAGACAAA+GGG | - | chr8.4:69502194-69502213 | None:intergenic | 40.0% | |
| GGAGTAATCCATTTCCTGAT+TGG | + | chr8.4:69503096-69503115 | MS.gene84752:CDS | 40.0% | |
| GTAATCCATTTCCTGATTGG+AGG | + | chr8.4:69503099-69503118 | MS.gene84752:CDS | 40.0% | |
| GTGAGTTTACCTTTCTCTTC+TGG | + | chr8.4:69503455-69503474 | MS.gene84752:CDS | 40.0% | |
| TACTACGGGGCTATATTAGT+TGG | - | chr8.4:69502783-69502802 | None:intergenic | 40.0% | |
| TATACCAAGCCAGGATGAAA+TGG | - | chr8.4:69502524-69502543 | None:intergenic | 40.0% | |
| TATTTGCTTGTCCTCCAATC+AGG | - | chr8.4:69503113-69503132 | None:intergenic | 40.0% | |
| TCAAGGTTGCTGCTCATAAA+AGG | - | chr8.4:69503173-69503192 | None:intergenic | 40.0% | |
| TCTCGTATGATGAAGGAGTT+AGG | + | chr8.4:69503431-69503450 | MS.gene84752:CDS | 40.0% | |
| TGAAGGAAGGTTGAAGACAA+AGG | - | chr8.4:69502195-69502214 | None:intergenic | 40.0% | |
| TGGAGGTTTGACAAAAATGG+TGG | + | chr8.4:69503475-69503494 | MS.gene84752:CDS | 40.0% | |
| TGGGCTGAAAAAGAGACAAA+TGG | + | chr8.4:69502987-69503006 | MS.gene84752:CDS | 40.0% | |
| TTCTGTGGATTTCCTGAACA+AGG | + | chr8.4:69502252-69502271 | MS.gene84752:CDS | 40.0% | |
| ! | AACCGTGTCTGCTGATTATA+AGG | + | chr8.4:69502219-69502238 | MS.gene84752:CDS | 40.0% |
| !! | AAAATGGTGGACTCTCTTGA+AGG | + | chr8.4:69503488-69503507 | MS.gene84752:CDS | 40.0% |
| ACTCTTCTGTATACCAAGCC+AGG | - | chr8.4:69502533-69502552 | None:intergenic | 45.0% | |
| AGCAGACACGGTTTCTTTGA+AGG | - | chr8.4:69502212-69502231 | None:intergenic | 45.0% | |
| CAGAAGAACCAGCATCTTTG+AGG | - | chr8.4:69502126-69502145 | None:intergenic | 45.0% | |
| CTTGTCCTCCAATCAGGAAA+TGG | - | chr8.4:69503107-69503126 | None:intergenic | 45.0% | |
| CTTTCCATTTCATCCTGGCT+TGG | + | chr8.4:69502517-69502536 | MS.gene84752:intron | 45.0% | |
| GAGGGAAACTTTCTCTTGGT+TGG | - | chr8.4:69501912-69501931 | None:intergenic | 45.0% | |
| GTCAAACCTCCAGAAGAGAA+AGG | - | chr8.4:69503467-69503486 | None:intergenic | 45.0% | |
| TCCTGCAAAGAGGATTTCCT+GGG | - | chr8.4:69503681-69503700 | None:intergenic | 45.0% | |
| TCGAGAAGCTGTTGTTGAGT+AGG | - | chr8.4:69502040-69502059 | None:intergenic | 45.0% | |
| TGAGAACTTGTCCTGCAAAG+AGG | - | chr8.4:69503691-69503710 | None:intergenic | 45.0% | |
| TGAGAAGAGATGTTTGGCGA+TGG | - | chr8.4:69501936-69501955 | None:intergenic | 45.0% | |
| TGGTGAGGGAAACTTTCTCT+TGG | - | chr8.4:69501916-69501935 | None:intergenic | 45.0% | |
| ! | AAGAACCAGCATCTTTGAGG+AGG | - | chr8.4:69502123-69502142 | None:intergenic | 45.0% |
| ! | CATCTTTGAGGAGGACAGAA+AGG | - | chr8.4:69502114-69502133 | None:intergenic | 45.0% |
| ! | GACACGGTTTCTTTGAAGGA+AGG | - | chr8.4:69502208-69502227 | None:intergenic | 45.0% |
| ! | GGCCTTATAATCAGCAGACA+CGG | - | chr8.4:69502224-69502243 | None:intergenic | 45.0% |
| ! | GGTTGGTGCTTGATTCATCA+AGG | - | chr8.4:69501895-69501914 | None:intergenic | 45.0% |
| ! | TAAGGCCACTTTGTCTTCTG+TGG | + | chr8.4:69502237-69502256 | MS.gene84752:CDS | 45.0% |
| !! | AAAGATGCTGGTTCTTCTGG+TGG | + | chr8.4:69502127-69502146 | MS.gene84752:CDS | 45.0% |
| !! | CTCAAAGATGCTGGTTCTTC+TGG | + | chr8.4:69502124-69502143 | MS.gene84752:CDS | 45.0% |
| AAGCTGTCAACTGACCCTTG+AGG | - | chr8.4:69503032-69503051 | None:intergenic | 50.0% | |
| AAGCTTCTGAGCCAGACCAA+GGG | - | chr8.4:69502486-69502505 | None:intergenic | 50.0% | |
| ACACACCATTGGCGAAAGAG+AGG | - | chr8.4:69502159-69502178 | None:intergenic | 50.0% | |
| ACCCAGGAAATCCTCTTTGC+AGG | + | chr8.4:69503677-69503696 | MS.gene84752:CDS | 50.0% | |
| AGAGATGTTTGGCGATGGTG+AGG | - | chr8.4:69501931-69501950 | None:intergenic | 50.0% | |
| CTCTTTCGCCAATGGTGTGT+GGG | + | chr8.4:69502159-69502178 | MS.gene84752:CDS | 50.0% | |
| GAGATGTTTGGCGATGGTGA+GGG | - | chr8.4:69501930-69501949 | None:intergenic | 50.0% | |
| GTCCTGCAAAGAGGATTTCC+TGG | - | chr8.4:69503682-69503701 | None:intergenic | 50.0% | |
| GTTCTCAGCATCATTGCTGC+TGG | + | chr8.4:69502004-69502023 | MS.gene84752:CDS | 50.0% | |
| TCTCTTTCGCCAATGGTGTG+TGG | + | chr8.4:69502158-69502177 | MS.gene84752:CDS | 50.0% | |
| TCTGTCCTCCTCAAAGATGC+TGG | + | chr8.4:69502115-69502134 | MS.gene84752:CDS | 50.0% | |
| TGACTGAGCTGCCATTCAGA+AGG | - | chr8.4:69503145-69503164 | None:intergenic | 50.0% | |
| ! | CTTTTCCACCCACACACCAT+TGG | - | chr8.4:69502170-69502189 | None:intergenic | 50.0% |
| !! | ATCATTGCTGCTGGCTCTGA+GGG | + | chr8.4:69502013-69502032 | MS.gene84752:CDS | 50.0% |
| !! | GTGGCCTTGTGTATTCCAAG+AGG | + | chr8.4:69503602-69503621 | MS.gene84752:CDS | 50.0% |
| CAAGGCCACCTTTCCAGCAT+TGG | - | chr8.4:69503591-69503610 | None:intergenic | 55.0% | |
| GAAGCTTCTGAGCCAGACCA+AGG | - | chr8.4:69502487-69502506 | None:intergenic | 55.0% | |
| TGCGACCAATGCTGGAAAGG+TGG | + | chr8.4:69503583-69503602 | MS.gene84752:CDS | 55.0% | |
| TGCTGCGACCAATGCTGGAA+AGG | + | chr8.4:69503580-69503599 | MS.gene84752:CDS | 55.0% | |
| TTTCGCCAATGGTGTGTGGG+TGG | + | chr8.4:69502162-69502181 | MS.gene84752:CDS | 55.0% | |
| !! | CATCATTGCTGCTGGCTCTG+AGG | + | chr8.4:69502012-69502031 | MS.gene84752:CDS | 55.0% |
| CCATTGGCGAAAGAGAGGCG+AGG | - | chr8.4:69502154-69502173 | None:intergenic | 60.0% | |
| CCTCGCCTCTCTTTCGCCAA+TGG | + | chr8.4:69502151-69502170 | MS.gene84752:CDS | 60.0% | |
| GAAGCTGCTGCGACCAATGC+TGG | + | chr8.4:69503575-69503594 | MS.gene84752:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 69501806 | 69503727 | 69501806 | ID=MS.gene84752 |
| chr8.4 | mRNA | 69501806 | 69503727 | 69501806 | ID=MS.gene84752.t1;Parent=MS.gene84752 |
| chr8.4 | exon | 69501806 | 69502273 | 69501806 | ID=MS.gene84752.t1.exon1;Parent=MS.gene84752.t1 |
| chr8.4 | CDS | 69501806 | 69502273 | 69501806 | ID=cds.MS.gene84752.t1;Parent=MS.gene84752.t1 |
| chr8.4 | exon | 69502957 | 69503727 | 69502957 | ID=MS.gene84752.t1.exon2;Parent=MS.gene84752.t1 |
| chr8.4 | CDS | 69502957 | 69503727 | 69502957 | ID=cds.MS.gene84752.t1;Parent=MS.gene84752.t1 |
| Gene Sequence |
| Protein sequence |
