Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84757.t1 | KEH18628.1 | 95.2 | 147 | 6 | 1 | 1 | 146 | 1 | 147 | 1.80E-76 | 295.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84757.t1 | Q9M160 | 38.4 | 112 | 44 | 5 | 5 | 95 | 8 | 115 | 8.8e-08 | 58.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84757.t1 | A0A072TP49 | 95.2 | 147 | 6 | 1 | 1 | 146 | 1 | 147 | 1.3e-76 | 295.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05456 | MS.gene84757 | 0.815143 | 1.07E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84757.t1 | MTR_8g027435 | 95.238 | 147 | 6 | 1 | 1 | 146 | 1 | 147 | 3.56e-98 | 283 |
| MS.gene84757.t1 | MTR_1g061910 | 76.667 | 90 | 20 | 1 | 149 | 238 | 28 | 116 | 8.58e-46 | 149 |
| MS.gene84757.t1 | MTR_7g117695 | 52.525 | 99 | 37 | 2 | 4 | 95 | 5 | 100 | 2.69e-25 | 99.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84757.t1 | AT5G53030 | 48.864 | 88 | 39 | 3 | 14 | 95 | 18 | 105 | 4.90e-15 | 72.4 |
| MS.gene84757.t1 | AT5G53030 | 48.864 | 88 | 39 | 3 | 14 | 95 | 18 | 105 | 7.70e-15 | 71.6 |
| MS.gene84757.t1 | AT4G27810 | 46.667 | 105 | 45 | 4 | 1 | 95 | 3 | 106 | 1.53e-14 | 70.1 |
Find 69 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAGCAAATTGGCTTTATA+TGG | 0.197442 | 8.4:+69430286 | MS.gene84757:CDS |
| TGCATTAAAGTTTATCATTC+TGG | 0.197912 | 8.4:-69430530 | None:intergenic |
| GTGGTTGGTGGTGGCATTAT+TGG | 0.232077 | 8.4:+69427989 | MS.gene84757:CDS |
| TCTCTGCCAGCCTGCTCTTT+AGG | 0.249834 | 8.4:-69430326 | None:intergenic |
| TCCATCACCTACAACAGTTT+TGG | 0.286053 | 8.4:+69427781 | MS.gene84757:CDS |
| CTCATGAATAATGGAAGTTT+TGG | 0.308636 | 8.4:-69427566 | None:intergenic |
| TTTGGATGGACCCTACAAAA+AGG | 0.345193 | 8.4:+69427799 | MS.gene84757:CDS |
| ACTTGGGAGTTTGATTCTTA+AGG | 0.363896 | 8.4:+69427856 | MS.gene84757:CDS |
| TCCATATAAAGCCAATTTGC+TGG | 0.363940 | 8.4:-69430287 | None:intergenic |
| ATGAAGAGATGGGTGATTAC+CGG | 0.380961 | 8.4:+69430348 | MS.gene84757:CDS |
| CTGGACCGGGTGGAGGATAA+TGG | 0.386160 | 8.4:-69430511 | None:intergenic |
| ACGTAACAAATCCAGCAAAT+TGG | 0.386542 | 8.4:+69430276 | MS.gene84757:CDS |
| GAAGCTTGTGAGGAAGAAAA+TGG | 0.395638 | 8.4:+69427533 | MS.gene84757:CDS |
| AAGGATTGTTGTGATTCCTT+TGG | 0.404092 | 8.4:+69427818 | MS.gene84757:CDS |
| AGGAAGAAGATAAAACATTA+TGG | 0.406591 | 8.4:+69428034 | MS.gene84757:CDS |
| TGATGATTGGCGTCGAAGAA+TGG | 0.418037 | 8.4:+69430409 | MS.gene84757:CDS |
| GGTGGAGGGCTCATGAATAA+TGG | 0.418821 | 8.4:-69427575 | None:intergenic |
| TCCAACACTAGTCAAGTGTT+TGG | 0.431206 | 8.4:+69427724 | MS.gene84757:CDS |
| ATCACAGCATCAATACCATT+TGG | 0.441782 | 8.4:+69427644 | MS.gene84757:CDS |
| ACAAGATCAGTACATGGTCT+TGG | 0.444506 | 8.4:-69427689 | None:intergenic |
| TCCAAACACTTGACTAGTGT+TGG | 0.454319 | 8.4:-69427725 | None:intergenic |
| CTCTCTGGTGAATGCATTGG+TGG | 0.455474 | 8.4:-69427593 | None:intergenic |
| AGCATCAATACCATTTGGTT+GGG | 0.456795 | 8.4:+69427649 | MS.gene84757:CDS |
| GGTCCATCCAAAACTGTTGT+AGG | 0.469058 | 8.4:-69427788 | None:intergenic |
| TGAAAGACGACGATGATGAT+TGG | 0.469552 | 8.4:+69430396 | MS.gene84757:CDS |
| TAAAGTTTATCATTCTGGAC+CGG | 0.470455 | 8.4:-69430525 | None:intergenic |
| TTTGTATCAATGAACAACCT+TGG | 0.486786 | 8.4:-69427755 | None:intergenic |
| GAATGGAGGCGAAGGCTGAC+AGG | 0.493199 | 8.4:+69430426 | MS.gene84757:CDS |
| CAGCATCAATACCATTTGGT+TGG | 0.495412 | 8.4:+69427648 | MS.gene84757:CDS |
| TTTGGTTGGGAAGAAGAGCC+AGG | 0.497915 | 8.4:+69427662 | MS.gene84757:CDS |
| GGCTCTTCTTCCCAACCAAA+TGG | 0.498578 | 8.4:-69427659 | None:intergenic |
| TCTGGTGAATGCATTGGTGG+AGG | 0.503654 | 8.4:-69427590 | None:intergenic |
| TTATATGGATTTAGATTCAC+GGG | 0.505831 | 8.4:+69430301 | MS.gene84757:CDS |
| TCCAAAACTGTTGTAGGTGA+TGG | 0.506928 | 8.4:-69427782 | None:intergenic |
| TATCATTCTGGACCGGGTGG+AGG | 0.513385 | 8.4:-69430518 | None:intergenic |
| GATTCTTAAGGAAGAAATGA+GGG | 0.514201 | 8.4:+69427868 | MS.gene84757:CDS |
| GATCTCTCTGGTGAATGCAT+TGG | 0.516177 | 8.4:-69427596 | None:intergenic |
| TGAAGAGATGGGTGATTACC+GGG | 0.519438 | 8.4:+69430349 | MS.gene84757:CDS |
| GGCTGGCAGAGATGAAGAGA+TGG | 0.522040 | 8.4:+69430337 | MS.gene84757:CDS |
| GAGGAGCAACAACCTGCGAC+TGG | 0.522879 | 8.4:+69430371 | MS.gene84757:CDS |
| TCGCAGGTTGTTGCTCCTCC+CGG | 0.527228 | 8.4:-69430367 | None:intergenic |
| CTGGTGAATGCATTGGTGGA+GGG | 0.527666 | 8.4:-69427589 | None:intergenic |
| TCGTCTTTCATTCCAGTCGC+AGG | 0.528542 | 8.4:-69430383 | None:intergenic |
| TTCACGGGTACCTAAAGAGC+AGG | 0.529298 | 8.4:+69430316 | MS.gene84757:CDS |
| TGATTCTTAAGGAAGAAATG+AGG | 0.535606 | 8.4:+69427867 | MS.gene84757:CDS |
| TTTATATGGATTTAGATTCA+CGG | 0.546656 | 8.4:+69430300 | MS.gene84757:CDS |
| TTTCCCACTTTCAAAACCAA+AGG | 0.551891 | 8.4:-69427834 | None:intergenic |
| ATGCATTCACCAGAGAGATC+AGG | 0.552291 | 8.4:+69427599 | MS.gene84757:CDS |
| AGTGAAAATGGAAGCTTGTG+AGG | 0.556127 | 8.4:+69427523 | None:intergenic |
| AATGATAATGTGGTTGGTGG+TGG | 0.559273 | 8.4:+69427980 | MS.gene84757:CDS |
| TTTGTTACGTCAGTTCTCGA+TGG | 0.559867 | 8.4:-69430263 | None:intergenic |
| GATAATGATAATGTGGTTGG+TGG | 0.575718 | 8.4:+69427977 | MS.gene84757:CDS |
| GTATCAATGAACAACCTTGG+AGG | 0.583736 | 8.4:-69427752 | None:intergenic |
| AAAGTTTATCATTCTGGACC+GGG | 0.591125 | 8.4:-69430524 | None:intergenic |
| GCGTCGAAGAATGGAGGCGA+AGG | 0.594977 | 8.4:+69430418 | MS.gene84757:CDS |
| AGTGTTTGGAACTTCCTCCA+AGG | 0.603766 | 8.4:+69427738 | MS.gene84757:CDS |
| AAGGATAATGATAATGTGGT+TGG | 0.603829 | 8.4:+69427974 | MS.gene84757:intron |
| CGGGTACCTAAAGAGCAGGC+TGG | 0.608825 | 8.4:+69430320 | MS.gene84757:CDS |
| GCTGGCAGAGATGAAGAGAT+GGG | 0.610499 | 8.4:+69430338 | MS.gene84757:CDS |
| AACTTCCATTATCCTCCACC+CGG | 0.630650 | 8.4:+69430506 | MS.gene84757:CDS |
| GGCTGACAGGACGTATGATG+AGG | 0.635222 | 8.4:+69430439 | MS.gene84757:CDS |
| TGATAAGGATAATGATAATG+TGG | 0.637344 | 8.4:+69427970 | MS.gene84757:intron |
| TGATTGGCGTCGAAGAATGG+AGG | 0.648326 | 8.4:+69430412 | MS.gene84757:CDS |
| GTTTATCATTCTGGACCGGG+TGG | 0.658479 | 8.4:-69430521 | None:intergenic |
| ATTGATGCTGTGATATGAAG+TGG | 0.663709 | 8.4:-69427635 | None:intergenic |
| AATGTTACAAGATCAGTACA+TGG | 0.674281 | 8.4:-69427695 | None:intergenic |
| GTGACAAGAATGTGAAGACG+AGG | 0.687739 | 8.4:+69428014 | MS.gene84757:CDS |
| GATGCTGTGATATGAAGTGG+TGG | 0.702825 | 8.4:-69427632 | None:intergenic |
| AGAGATGGGTGATTACCGGG+AGG | 0.749155 | 8.4:+69430352 | MS.gene84757:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGTAAATATAATTATTG+TGG | + | chr8.4:69428391-69428410 | MS.gene84757:intron | 10.0% |
| !! | TAAATAAAATGATTTATCTT+AGG | - | chr8.4:69428619-69428638 | None:intergenic | 10.0% |
| !!! | AAATGTTTTTTTATGATATA+TGG | + | chr8.4:69430091-69430110 | MS.gene84757:intron | 10.0% |
| !! | ATTATTTATTCTTTCAGTTA+TGG | - | chr8.4:69430164-69430183 | None:intergenic | 15.0% |
| !! | TAGTCTTTGTAAAAAAAAAA+AGG | + | chr8.4:69429453-69429472 | MS.gene84757:intron | 15.0% |
| !! | TTGTTATAGAAATTTCTATT+TGG | + | chr8.4:69428239-69428258 | MS.gene84757:intron | 15.0% |
| !!! | AATACCCTTATTTTATTTTT+TGG | + | chr8.4:69428968-69428987 | MS.gene84757:intron | 15.0% |
| !!! | ATAGTTGATTTTGATATTTT+TGG | + | chr8.4:69428456-69428475 | MS.gene84757:intron | 15.0% |
| !!! | TATACAATTGAAAAAGTATA+AGG | + | chr8.4:69429152-69429171 | MS.gene84757:intron | 15.0% |
| !!! | TTTTTTCATCCAAAAAATAA+TGG | + | chr8.4:69429123-69429142 | MS.gene84757:intron | 15.0% |
| !! | AAACATCAAATAAAAAGGAA+TGG | + | chr8.4:69429278-69429297 | MS.gene84757:intron | 20.0% |
| !! | AAACATCAAATAAAAAGGAA+TGG | - | chr8.4:69429297-69429278 | None:intergenic | 20.0% |
| !! | AAAGTGGAATATATTGTATT+AGG | - | chr8.4:69429339-69429358 | None:intergenic | 20.0% |
| !! | AATGAAAATAGTTGTAGATT+TGG | + | chr8.4:69428940-69428959 | MS.gene84757:intron | 20.0% |
| !! | AGCTAAAACATCAAATAAAA+AGG | + | chr8.4:69429273-69429292 | MS.gene84757:intron | 20.0% |
| !! | AGCTAAAACATCAAATAAAA+AGG | - | chr8.4:69429292-69429273 | None:intergenic | 20.0% |
| !! | AGGAAGAATAATAATAATGT+TGG | + | chr8.4:69429473-69429492 | MS.gene84757:intron | 20.0% |
| !! | ATATCAAAATCAACTATACT+TGG | - | chr8.4:69428453-69428472 | None:intergenic | 20.0% |
| !! | GGAAGAATAATAATAATGTT+GGG | + | chr8.4:69429474-69429493 | MS.gene84757:intron | 20.0% |
| !! | TTAAGCGTTAAAATCATATT+TGG | - | chr8.4:69428555-69428574 | None:intergenic | 20.0% |
| !! | TTTATATGGATTTAGATTCA+CGG | + | chr8.4:69430300-69430319 | MS.gene84757:CDS | 20.0% |
| !!! | AAGAAAAGTGTATAAATGAA+GGG | - | chr8.4:69429363-69429382 | None:intergenic | 20.0% |
| !!! | AGTGATTTTTTCTAAAATGT+AGG | + | chr8.4:69429514-69429533 | MS.gene84757:intron | 20.0% |
| !!! | AGTGTATTTTGATTTGATTT+GGG | + | chr8.4:69428153-69428172 | MS.gene84757:intron | 20.0% |
| !!! | ATTTGATGTTTTAGAATTGT+TGG | - | chr8.4:69429233-69429252 | None:intergenic | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | - | chr8.4:69428796-69428815 | None:intergenic | 20.0% |
| !!! | GTGATTTTTTCTAAAATGTA+GGG | + | chr8.4:69429515-69429534 | MS.gene84757:intron | 20.0% |
| !!! | TAAGAAAAGTGTATAAATGA+AGG | - | chr8.4:69429364-69429383 | None:intergenic | 20.0% |
| !!! | TAGATTCATTTTCAACATAA+AGG | + | chr8.4:69430041-69430060 | MS.gene84757:intron | 20.0% |
| !!! | TAGTGTATTTTGATTTGATT+TGG | + | chr8.4:69428152-69428171 | MS.gene84757:intron | 20.0% |
| !!! | TGTATTTTTGAGTTAGTTTT+TGG | + | chr8.4:69430183-69430202 | MS.gene84757:intron | 20.0% |
| ! | AAATGAGGGTAAAGAAAAAA+GGG | + | chr8.4:69427882-69427901 | MS.gene84757:intron | 25.0% |
| ! | AGGAAGAAGATAAAACATTA+TGG | + | chr8.4:69428034-69428053 | MS.gene84757:CDS | 25.0% |
| ! | ATCAAATAAAAAGGAATGGA+GGG | + | chr8.4:69429282-69429301 | MS.gene84757:intron | 25.0% |
| ! | ATCAAATAAAAAGGAATGGA+GGG | - | chr8.4:69429301-69429282 | None:intergenic | 25.0% |
| ! | GCAGCCAAAAAATAAAATAA+GGG | - | chr8.4:69428975-69428994 | None:intergenic | 25.0% |
| ! | GTAGTACATATTTGGATAAT+TGG | - | chr8.4:69428750-69428769 | None:intergenic | 25.0% |
| ! | TCCAAATCTTCTTAAATGAA+CGG | + | chr8.4:69429028-69429047 | MS.gene84757:intron | 25.0% |
| ! | TTACATTAAAATATTCCAGC+AGG | - | chr8.4:69429659-69429678 | None:intergenic | 25.0% |
| ! | TTATATGGATTTAGATTCAC+GGG | + | chr8.4:69430301-69430320 | MS.gene84757:CDS | 25.0% |
| ! | TTCATCCAAAAAATAATGGT+GGG | + | chr8.4:69429127-69429146 | MS.gene84757:intron | 25.0% |
| ! | TTTCATCCAAAAAATAATGG+TGG | + | chr8.4:69429126-69429145 | MS.gene84757:intron | 25.0% |
| !! | AAATTTCTATTTGGTTCATG+TGG | + | chr8.4:69428248-69428267 | MS.gene84757:intron | 25.0% |
| !! | AATTTCTATTTGGTTCATGT+GGG | + | chr8.4:69428249-69428268 | MS.gene84757:intron | 25.0% |
| !! | AGAAAAGTGTATAAATGAAG+GGG | - | chr8.4:69429362-69429381 | None:intergenic | 25.0% |
| !! | ATGTTGAACAATTTTGTTGA+TGG | - | chr8.4:69429969-69429988 | None:intergenic | 25.0% |
| !! | ATTTCACTTAACTAGTTTAC+TGG | + | chr8.4:69428354-69428373 | MS.gene84757:intron | 25.0% |
| !! | CTTTTGTTAGTAAATCCAAA+TGG | - | chr8.4:69428681-69428700 | None:intergenic | 25.0% |
| !! | TGATAAGGATAATGATAATG+TGG | + | chr8.4:69427970-69427989 | MS.gene84757:intron | 25.0% |
| !! | TTGAAATGAGTCAGTTATTT+TGG | - | chr8.4:69428819-69428838 | None:intergenic | 25.0% |
| !!! | ACATGTTTCAATTTTAGCAT+GGG | - | chr8.4:69429770-69429789 | None:intergenic | 25.0% |
| !!! | ATTTTGAGAAGAAAAAAGCA+AGG | - | chr8.4:69429008-69429027 | None:intergenic | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | - | chr8.4:69428797-69428816 | None:intergenic | 25.0% |
| !!! | TACATGTTTCAATTTTAGCA+TGG | - | chr8.4:69429771-69429790 | None:intergenic | 25.0% |
| !!! | TGAAATGAGTCAGTTATTTT+GGG | - | chr8.4:69428818-69428837 | None:intergenic | 25.0% |
| !!! | TGAATGTTAAGTTGAATAGT+TGG | + | chr8.4:69428306-69428325 | MS.gene84757:intron | 25.0% |
| !!! | TGACACTTTTAAAAAGTGAA+CGG | + | chr8.4:69429175-69429194 | MS.gene84757:intron | 25.0% |
| AAAAAAGCAAGGAGTAATCA+TGG | - | chr8.4:69428997-69429016 | None:intergenic | 30.0% | |
| AAATCTTCTTAAATGAACGG+TGG | + | chr8.4:69429031-69429050 | MS.gene84757:intron | 30.0% | |
| AATCTTCTTAAATGAACGGT+GGG | + | chr8.4:69429032-69429051 | MS.gene84757:intron | 30.0% | |
| AATGTTACAAGATCAGTACA+TGG | - | chr8.4:69427698-69427717 | None:intergenic | 30.0% | |
| ACCGTTCATTTAAGAAGATT+TGG | - | chr8.4:69429032-69429051 | None:intergenic | 30.0% | |
| AGCGTTAAAATCATATTTGG+TGG | - | chr8.4:69428552-69428571 | None:intergenic | 30.0% | |
| ATTTGGAAATATCAAGAGCA+TGG | - | chr8.4:69429910-69429929 | None:intergenic | 30.0% | |
| CATCAAATAAAAAGGAATGG+AGG | + | chr8.4:69429281-69429300 | MS.gene84757:intron | 30.0% | |
| CATCAAATAAAAAGGAATGG+AGG | - | chr8.4:69429300-69429281 | None:intergenic | 30.0% | |
| GAAATGAGGGTAAAGAAAAA+AGG | + | chr8.4:69427881-69427900 | MS.gene84757:intron | 30.0% | |
| GATTCTTAAGGAAGAAATGA+GGG | + | chr8.4:69427868-69427887 | MS.gene84757:CDS | 30.0% | |
| GGCAGCCAAAAAATAAAATA+AGG | - | chr8.4:69428976-69428995 | None:intergenic | 30.0% | |
| GGTAAATAGAAACCAGAAAA+TGG | + | chr8.4:69429536-69429555 | MS.gene84757:intron | 30.0% | |
| GTTATTTAGATTAAACCCTG+TGG | + | chr8.4:69428328-69428347 | MS.gene84757:intron | 30.0% | |
| TACAAGTAATTGCTGATAAC+TGG | - | chr8.4:69429744-69429763 | None:intergenic | 30.0% | |
| TGAGCAGCATAAACAATAAA+TGG | - | chr8.4:69429703-69429722 | None:intergenic | 30.0% | |
| TGATTCTTAAGGAAGAAATG+AGG | + | chr8.4:69427867-69427886 | MS.gene84757:CDS | 30.0% | |
| TGCAATTTCCAGATCAATAA+AGG | - | chr8.4:69430003-69430022 | None:intergenic | 30.0% | |
| TTCACTTTCCTTTATTGATC+TGG | + | chr8.4:69429992-69430011 | MS.gene84757:intron | 30.0% | |
| TTCATGAAATATGCACCATT+TGG | + | chr8.4:69428663-69428682 | MS.gene84757:intron | 30.0% | |
| TTGGAGGAAAATGGATATTA+AGG | + | chr8.4:69427916-69427935 | MS.gene84757:intron | 30.0% | |
| TTGTATAGTAGTAGTGTTGT+TGG | + | chr8.4:69430117-69430136 | MS.gene84757:intron | 30.0% | |
| TTTGTATCAATGAACAACCT+TGG | - | chr8.4:69427758-69427777 | None:intergenic | 30.0% | |
| ! | AAGGATAATGATAATGTGGT+TGG | + | chr8.4:69427974-69427993 | MS.gene84757:intron | 30.0% |
| ! | ATCACAACAATCCTTTTTGT+AGG | - | chr8.4:69427813-69427832 | None:intergenic | 30.0% |
| ! | GAACTTTAAGTTAAGCATGA+AGG | - | chr8.4:69429942-69429961 | None:intergenic | 30.0% |
| ! | TCACAACAATCCTTTTTGTA+GGG | - | chr8.4:69427812-69427831 | None:intergenic | 30.0% |
| ! | TTTGGAAATATCAAGAGCAT+GGG | - | chr8.4:69429909-69429928 | None:intergenic | 30.0% |
| !! | CATGTTTCAATTTTAGCATG+GGG | - | chr8.4:69429769-69429788 | None:intergenic | 30.0% |
| !! | CTCATGAATAATGGAAGTTT+TGG | - | chr8.4:69427569-69427588 | None:intergenic | 30.0% |
| !! | TTTTGGTAATTGGAGGAAAA+TGG | + | chr8.4:69427907-69427926 | MS.gene84757:intron | 30.0% |
| !!! | AAAAAGGGTGTTTTGGTAAT+TGG | + | chr8.4:69427897-69427916 | MS.gene84757:intron | 30.0% |
| !!! | AGTTTTTGGTCAATGAAAGA+GGG | + | chr8.4:69430197-69430216 | MS.gene84757:intron | 30.0% |
| !!! | ATACTCCCACCATTATTTTT+TGG | - | chr8.4:69429135-69429154 | None:intergenic | 30.0% |
| !!! | ATTCCTTTGGTTTTGAAAGT+GGG | + | chr8.4:69427831-69427850 | MS.gene84757:CDS | 30.0% |
| !!! | CATGTTTTTTGATCATCTTC+TGG | + | chr8.4:69427947-69427966 | MS.gene84757:intron | 30.0% |
| !!! | GTAAAGAAAAAAGGGTGTTT+TGG | + | chr8.4:69427890-69427909 | MS.gene84757:intron | 30.0% |
| !!! | TAGTTTTTGGTCAATGAAAG+AGG | + | chr8.4:69430196-69430215 | MS.gene84757:intron | 30.0% |
| !!! | TGATAACTGGTGGTTTTTTA+GGG | - | chr8.4:69429731-69429750 | None:intergenic | 30.0% |
| AAAATATTAAGGACAGCTGG+CGG | + | chr8.4:69429615-69429634 | MS.gene84757:intron | 35.0% | |
| AAGGATTGTTGTGATTCCTT+TGG | + | chr8.4:69427818-69427837 | MS.gene84757:CDS | 35.0% | |
| AAGTAATTGCTGATAACTGG+TGG | - | chr8.4:69429741-69429760 | None:intergenic | 35.0% | |
| ACACTTCCAAAAAATGAACG+TGG | + | chr8.4:69429090-69429109 | MS.gene84757:intron | 35.0% | |
| ACGTAACAAATCCAGCAAAT+TGG | + | chr8.4:69430276-69430295 | MS.gene84757:CDS | 35.0% | |
| ACTTGGGAGTTTGATTCTTA+AGG | + | chr8.4:69427856-69427875 | MS.gene84757:CDS | 35.0% | |
| AGAAAATGGGTCAGTTATTC+CGG | - | chr8.4:69428783-69428802 | None:intergenic | 35.0% | |
| AGCATCAATACCATTTGGTT+GGG | + | chr8.4:69427649-69427668 | MS.gene84757:CDS | 35.0% | |
| AGTTAAGTGAAATCTACCAC+AGG | - | chr8.4:69428347-69428366 | None:intergenic | 35.0% | |
| ATATTCCAGCAGGTAAAAAG+TGG | - | chr8.4:69429649-69429668 | None:intergenic | 35.0% | |
| ATCACAGCATCAATACCATT+TGG | + | chr8.4:69427644-69427663 | MS.gene84757:CDS | 35.0% | |
| ATTGATGCTGTGATATGAAG+TGG | - | chr8.4:69427638-69427657 | None:intergenic | 35.0% | |
| ATTTACCCAAACAAGAGACT+TGG | - | chr8.4:69428083-69428102 | None:intergenic | 35.0% | |
| CAAAGTAGGTCAATTATACC+GGG | + | chr8.4:69429399-69429418 | MS.gene84757:intron | 35.0% | |
| CACTTCCAAAAAATGAACGT+GGG | + | chr8.4:69429091-69429110 | MS.gene84757:intron | 35.0% | |
| CCAAAGTAGGTCAATTATAC+CGG | + | chr8.4:69429398-69429417 | MS.gene84757:intron | 35.0% | |
| GTGCACAAGGGAAAATATTA+AGG | + | chr8.4:69429604-69429623 | MS.gene84757:intron | 35.0% | |
| GTTAAGTGAAATCTACCACA+GGG | - | chr8.4:69428346-69428365 | None:intergenic | 35.0% | |
| GTTTGTGACAAGGGTAAAAT+TGG | + | chr8.4:69429197-69429216 | MS.gene84757:intron | 35.0% | |
| TATTCCAGCAGGTAAAAAGT+GGG | - | chr8.4:69429648-69429667 | None:intergenic | 35.0% | |
| TCCATATAAAGCCAATTTGC+TGG | - | chr8.4:69430290-69430309 | None:intergenic | 35.0% | |
| TCTGTGTGAAAAACCAAAGT+AGG | + | chr8.4:69429385-69429404 | MS.gene84757:intron | 35.0% | |
| TGTATAAATGAAGGGGAAAG+TGG | - | chr8.4:69429355-69429374 | None:intergenic | 35.0% | |
| TTGATCATCTTCTGGTGATA+AGG | + | chr8.4:69427955-69427974 | MS.gene84757:intron | 35.0% | |
| TTTCCCACTTTCAAAACCAA+AGG | - | chr8.4:69427837-69427856 | None:intergenic | 35.0% | |
| ! | ATGGAGGGAGTATATTGTAT+TGG | - | chr8.4:69428866-69428885 | None:intergenic | 35.0% |
| ! | CATGAAGGAGAAAGCATATT+TGG | - | chr8.4:69429927-69429946 | None:intergenic | 35.0% |
| ! | GATAATGATAATGTGGTTGG+TGG | + | chr8.4:69427977-69427996 | MS.gene84757:CDS | 35.0% |
| ! | TGGAGGGAGTATATTGTATT+GGG | - | chr8.4:69428865-69428884 | None:intergenic | 35.0% |
| !! | ACTAGTTTACTGGTTTAGAG+TGG | + | chr8.4:69428364-69428383 | MS.gene84757:intron | 35.0% |
| !! | TCCAGCAAATTGGCTTTATA+TGG | + | chr8.4:69430286-69430305 | MS.gene84757:CDS | 35.0% |
| !! | TGATTTGATTTGGGTTATGC+TGG | + | chr8.4:69428162-69428181 | MS.gene84757:intron | 35.0% |
| !!! | ATAACTGGTGGTTTTTTAGG+GGG | - | chr8.4:69429729-69429748 | None:intergenic | 35.0% |
| !!! | ATACTCCCACGTTCATTTTT+TGG | - | chr8.4:69429099-69429118 | None:intergenic | 35.0% |
| !!! | CTGATAACTGGTGGTTTTTT+AGG | - | chr8.4:69429732-69429751 | None:intergenic | 35.0% |
| !!! | GATAACTGGTGGTTTTTTAG+GGG | - | chr8.4:69429730-69429749 | None:intergenic | 35.0% |
| !!! | GATTCCTTTGGTTTTGAAAG+TGG | + | chr8.4:69427830-69427849 | MS.gene84757:CDS | 35.0% |
| !!! | GTTTTGAAAGTGGGAAACTT+GGG | + | chr8.4:69427840-69427859 | MS.gene84757:CDS | 35.0% |
| AAACCAGAAAATGGACAGTG+TGG | + | chr8.4:69429545-69429564 | MS.gene84757:intron | 40.0% | |
| AAAGTGAACGGTTTGTGACA+AGG | + | chr8.4:69429187-69429206 | MS.gene84757:intron | 40.0% | |
| AAGACTAGATGTGACCATCT+TGG | - | chr8.4:69429440-69429459 | None:intergenic | 40.0% | |
| AAGTGAACGGTTTGTGACAA+GGG | + | chr8.4:69429188-69429207 | MS.gene84757:intron | 40.0% | |
| ACAAGAGACTTGGCATGAAA+TGG | - | chr8.4:69428073-69428092 | None:intergenic | 40.0% | |
| ACAAGATCAGTACATGGTCT+TGG | - | chr8.4:69427692-69427711 | None:intergenic | 40.0% | |
| ATGAAGAGATGGGTGATTAC+CGG | + | chr8.4:69430348-69430367 | MS.gene84757:CDS | 40.0% | |
| ATGTTGAGCATGAAGGAGAA+GGG | - | chr8.4:69429865-69429884 | None:intergenic | 40.0% | |
| CAGCATCAATACCATTTGGT+TGG | + | chr8.4:69427648-69427667 | MS.gene84757:CDS | 40.0% | |
| CCGGTATAATTGACCTACTT+TGG | - | chr8.4:69429401-69429420 | None:intergenic | 40.0% | |
| GAAAATGGGTCAGTTATTCC+GGG | - | chr8.4:69428782-69428801 | None:intergenic | 40.0% | |
| GAAGCTTGTGAGGAAGAAAA+TGG | + | chr8.4:69427533-69427552 | MS.gene84757:CDS | 40.0% | |
| GGGAAAATATTAAGGACAGC+TGG | + | chr8.4:69429612-69429631 | MS.gene84757:intron | 40.0% | |
| GTATCAATGAACAACCTTGG+AGG | - | chr8.4:69427755-69427774 | None:intergenic | 40.0% | |
| TCCAAAACTGTTGTAGGTGA+TGG | - | chr8.4:69427785-69427804 | None:intergenic | 40.0% | |
| TCCAAACACTTGACTAGTGT+TGG | - | chr8.4:69427728-69427747 | None:intergenic | 40.0% | |
| TCCAACACTAGTCAAGTGTT+TGG | + | chr8.4:69427724-69427743 | MS.gene84757:CDS | 40.0% | |
| TGAAAGACGACGATGATGAT+TGG | + | chr8.4:69430396-69430415 | MS.gene84757:CDS | 40.0% | |
| TTCATGCCAAGTCTCTTGTT+TGG | + | chr8.4:69428074-69428093 | MS.gene84757:intron | 40.0% | |
| TTTGGATGGACCCTACAAAA+AGG | + | chr8.4:69427799-69427818 | MS.gene84757:CDS | 40.0% | |
| TTTGTTACGTCAGTTCTCGA+TGG | - | chr8.4:69430266-69430285 | None:intergenic | 40.0% | |
| ! | AAGAAGCATGTTGAGCATGA+AGG | - | chr8.4:69429872-69429891 | None:intergenic | 40.0% |
| ! | CGAAGCTCAACATGAGTTTT+AGG | - | chr8.4:69429839-69429858 | None:intergenic | 40.0% |
| ! | GTTTTTGTTCCTGATCTCTC+TGG | - | chr8.4:69427611-69427630 | None:intergenic | 40.0% |
| ! | TCATGCCAAGTCTCTTGTTT+GGG | + | chr8.4:69428075-69428094 | MS.gene84757:intron | 40.0% |
| ! | TCCATCACCTACAACAGTTT+TGG | + | chr8.4:69427781-69427800 | MS.gene84757:CDS | 40.0% |
| !! | AATGATAATGTGGTTGGTGG+TGG | + | chr8.4:69427980-69427999 | MS.gene84757:CDS | 40.0% |
| !! | ATTGGTGTTGTAGCCATTGT+TGG | - | chr8.4:69430230-69430249 | None:intergenic | 40.0% |
| !!! | AAAACCCACTTTTTACCTGC+TGG | + | chr8.4:69429641-69429660 | MS.gene84757:intron | 40.0% |
| !!! | AAGGGTGTTTTGGTAATTGG+AGG | + | chr8.4:69427900-69427919 | MS.gene84757:intron | 40.0% |
| !!! | GCTCAACATGAGTTTTAGGA+TGG | - | chr8.4:69429835-69429854 | None:intergenic | 40.0% |
| !!! | GGTTTTGAAAGTGGGAAACT+TGG | + | chr8.4:69427839-69427858 | MS.gene84757:CDS | 40.0% |
| !!! | TAACTGGTGGTTTTTTAGGG+GGG | - | chr8.4:69429728-69429747 | None:intergenic | 40.0% |
| !!! | TCACCTACAACAGTTTTGGA+TGG | + | chr8.4:69427785-69427804 | MS.gene84757:CDS | 40.0% |
| AACTTCCATTATCCTCCACC+CGG | + | chr8.4:69430506-69430525 | MS.gene84757:CDS | 45.0% | |
| AAGACTTGTGCATGTGCACA+AGG | + | chr8.4:69429591-69429610 | MS.gene84757:intron | 45.0% | |
| AGACTTGTGCATGTGCACAA+GGG | + | chr8.4:69429592-69429611 | MS.gene84757:intron | 45.0% | |
| AGAGGGTAAGAAGCCAACAA+TGG | + | chr8.4:69430214-69430233 | MS.gene84757:intron | 45.0% | |
| ATGCATTCACCAGAGAGATC+AGG | + | chr8.4:69427599-69427618 | MS.gene84757:CDS | 45.0% | |
| CATGTTGAGCATGAAGGAGA+AGG | - | chr8.4:69429866-69429885 | None:intergenic | 45.0% | |
| CGGAGGGAGTAGTACATATT+TGG | - | chr8.4:69428758-69428777 | None:intergenic | 45.0% | |
| GATCTCTCTGGTGAATGCAT+TGG | - | chr8.4:69427599-69427618 | None:intergenic | 45.0% | |
| GATGCTGTGATATGAAGTGG+TGG | - | chr8.4:69427635-69427654 | None:intergenic | 45.0% | |
| GATGGATCTGGCAACAAGAT+TGG | - | chr8.4:69430248-69430267 | None:intergenic | 45.0% | |
| GGTCCATCCAAAACTGTTGT+AGG | - | chr8.4:69427791-69427810 | None:intergenic | 45.0% | |
| GTAGGTCAATTATACCGGGA+CGG | + | chr8.4:69429403-69429422 | MS.gene84757:intron | 45.0% | |
| GTGACAAGAATGTGAAGACG+AGG | + | chr8.4:69428014-69428033 | MS.gene84757:CDS | 45.0% | |
| GTGTTTCACGTGTGAAGCTA+AGG | - | chr8.4:69429813-69429832 | None:intergenic | 45.0% | |
| TGAAGAGATGGGTGATTACC+GGG | + | chr8.4:69430349-69430368 | MS.gene84757:CDS | 45.0% | |
| ! | AGTGTTTGGAACTTCCTCCA+AGG | + | chr8.4:69427738-69427757 | MS.gene84757:CDS | 45.0% |
| ! | CACAAGTCTTTTGCTTGTGC+AGG | - | chr8.4:69429581-69429600 | None:intergenic | 45.0% |
| ! | GGAAATATCAAGAGCATGGG+TGG | - | chr8.4:69429906-69429925 | None:intergenic | 45.0% |
| ! | TGATGATTGGCGTCGAAGAA+TGG | + | chr8.4:69430409-69430428 | MS.gene84757:CDS | 45.0% |
| !! | GTACATGGTCTTGGTTTTCC+TGG | - | chr8.4:69427683-69427702 | None:intergenic | 45.0% |
| ACGTCAGTTCTCGATGGATC+TGG | - | chr8.4:69430260-69430279 | None:intergenic | 50.0% | |
| ATGGGTCAGTTATTCCGGGA+CGG | - | chr8.4:69428778-69428797 | None:intergenic | 50.0% | |
| CCAGAAAATGGACAGTGTGG+TGG | + | chr8.4:69429548-69429567 | MS.gene84757:intron | 50.0% | |
| CTCTCTGGTGAATGCATTGG+TGG | - | chr8.4:69427596-69427615 | None:intergenic | 50.0% | |
| GCTGGCAGAGATGAAGAGAT+GGG | + | chr8.4:69430338-69430357 | MS.gene84757:CDS | 50.0% | |
| GGCTCTTCTTCCCAACCAAA+TGG | - | chr8.4:69427662-69427681 | None:intergenic | 50.0% | |
| GGTGGAGGGCTCATGAATAA+TGG | - | chr8.4:69427578-69427597 | None:intergenic | 50.0% | |
| GTCAATTATACCGGGACGGA+GGG | + | chr8.4:69429407-69429426 | MS.gene84757:intron | 50.0% | |
| TCGTCTTTCATTCCAGTCGC+AGG | - | chr8.4:69430386-69430405 | None:intergenic | 50.0% | |
| TTCACGGGTACCTAAAGAGC+AGG | + | chr8.4:69430316-69430335 | MS.gene84757:CDS | 50.0% | |
| TTTGGTTGGGAAGAAGAGCC+AGG | + | chr8.4:69427662-69427681 | MS.gene84757:CDS | 50.0% | |
| ! | ATCAAGAGCATGGGTGGCTA+TGG | - | chr8.4:69429900-69429919 | None:intergenic | 50.0% |
| ! | CCACCACACTGTCCATTTTC+TGG | - | chr8.4:69429551-69429570 | None:intergenic | 50.0% |
| ! | CTGGTGAATGCATTGGTGGA+GGG | - | chr8.4:69427592-69427611 | None:intergenic | 50.0% |
| ! | TCTGGTGAATGCATTGGTGG+AGG | - | chr8.4:69427593-69427612 | None:intergenic | 50.0% |
| ! | TGATTGGCGTCGAAGAATGG+AGG | + | chr8.4:69430412-69430431 | MS.gene84757:CDS | 50.0% |
| !! | GTGGTTGGTGGTGGCATTAT+TGG | + | chr8.4:69427989-69428008 | MS.gene84757:CDS | 50.0% |
| AGAGATGGGTGATTACCGGG+AGG | + | chr8.4:69430352-69430371 | MS.gene84757:CDS | 55.0% | |
| ATGTACTACTCCCTCCGTCC+CGG | + | chr8.4:69428761-69428780 | MS.gene84757:intron | 55.0% | |
| GGCTGACAGGACGTATGATG+AGG | + | chr8.4:69430439-69430458 | MS.gene84757:CDS | 55.0% | |
| GGCTGGCAGAGATGAAGAGA+TGG | + | chr8.4:69430337-69430356 | MS.gene84757:CDS | 55.0% | |
| GGTCAATTATACCGGGACGG+AGG | + | chr8.4:69429406-69429425 | MS.gene84757:intron | 55.0% | |
| GTCAGTTATTCCGGGACGGA+GGG | - | chr8.4:69428774-69428793 | None:intergenic | 55.0% | |
| TCTCTGCCAGCCTGCTCTTT+AGG | - | chr8.4:69430329-69430348 | None:intergenic | 55.0% | |
| ! | CGGAGGGAGTATAGCCAAGA+TGG | + | chr8.4:69429423-69429442 | MS.gene84757:intron | 55.0% |
| CGGGTACCTAAAGAGCAGGC+TGG | + | chr8.4:69430320-69430339 | MS.gene84757:CDS | 60.0% | |
| CTGGACCGGGTGGAGGATAA+TGG | - | chr8.4:69430514-69430533 | None:intergenic | 60.0% | |
| GAATGGAGGCGAAGGCTGAC+AGG | + | chr8.4:69430426-69430445 | MS.gene84757:CDS | 60.0% | |
| GAGGAGCAACAACCTGCGAC+TGG | + | chr8.4:69430371-69430390 | MS.gene84757:CDS | 60.0% | |
| GCGTCGAAGAATGGAGGCGA+AGG | + | chr8.4:69430418-69430437 | MS.gene84757:CDS | 60.0% | |
| GGTCAGTTATTCCGGGACGG+AGG | - | chr8.4:69428775-69428794 | None:intergenic | 60.0% | |
| TCGCAGGTTGTTGCTCCTCC+CGG | - | chr8.4:69430370-69430389 | None:intergenic | 60.0% | |
| TGGCTATACTCCCTCCGTCC+CGG | - | chr8.4:69429420-69429439 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 69427530 | 69430538 | 69427530 | ID=MS.gene84757 |
| chr8.4 | mRNA | 69427530 | 69430538 | 69427530 | ID=MS.gene84757.t1;Parent=MS.gene84757 |
| chr8.4 | exon | 69427530 | 69427889 | 69427530 | ID=MS.gene84757.t1.exon1;Parent=MS.gene84757.t1 |
| chr8.4 | CDS | 69427530 | 69427889 | 69427530 | ID=cds.MS.gene84757.t1;Parent=MS.gene84757.t1 |
| chr8.4 | exon | 69427977 | 69428055 | 69427977 | ID=MS.gene84757.t1.exon2;Parent=MS.gene84757.t1 |
| chr8.4 | CDS | 69427977 | 69428055 | 69427977 | ID=cds.MS.gene84757.t1;Parent=MS.gene84757.t1 |
| chr8.4 | exon | 69430261 | 69430538 | 69430261 | ID=MS.gene84757.t1.exon3;Parent=MS.gene84757.t1 |
| chr8.4 | CDS | 69430261 | 69430538 | 69430261 | ID=cds.MS.gene84757.t1;Parent=MS.gene84757.t1 |
| Gene Sequence |
| Protein sequence |
