Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85020.t1 | XP_013455361.1 | 86 | 413 | 38 | 4 | 1 | 413 | 1 | 393 | 2.70E-133 | 485.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85020.t1 | Q9LVA0 | 72.6 | 164 | 45 | 0 | 248 | 411 | 282 | 445 | 5.0e-59 | 229.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85020.t1 | A0A072UIC5 | 86.0 | 413 | 38 | 4 | 1 | 413 | 1 | 393 | 2.0e-133 | 485.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054662 | MS.gene85020 | 0.803892 | 2.81E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85020.t1 | MTR_4g036110 | 88.434 | 415 | 24 | 5 | 1 | 413 | 1 | 393 | 0.0 | 656 |
| MS.gene85020.t1 | MTR_8g028265 | 30.508 | 118 | 80 | 1 | 255 | 370 | 467 | 584 | 8.73e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85020.t1 | AT5G62390 | 42.958 | 426 | 173 | 10 | 41 | 411 | 35 | 445 | 1.15e-85 | 268 |
Find 102 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCAATAGCCAGCTCTCTA+AGG | 0.271737 | 4.2:-68183298 | None:intergenic |
| CACCTTCTTCGATTTCCTTC+CGG | 0.276264 | 4.2:-68184184 | None:intergenic |
| CAGTGATCTTCCAGCAGGTT+GGG | 0.323133 | 4.2:-68184120 | None:intergenic |
| TATTGCAAAATCCAAGTTAA+AGG | 0.339832 | 4.2:+68183313 | MS.gene85020:CDS |
| AGGGAAGAGTGGTAGGGTTT+CGG | 0.359805 | 4.2:-68180687 | None:intergenic |
| AAATGGACGGCTGAGATTAA+AGG | 0.362663 | 4.2:+68181091 | MS.gene85020:CDS |
| GTATAAATGGATAGCTGAAT+TGG | 0.374457 | 4.2:+68181015 | MS.gene85020:CDS |
| GGTTTGATAGAAAGTATAAA+TGG | 0.378976 | 4.2:+68181002 | MS.gene85020:CDS |
| GGGAAGATAGTGGGAATGAT+AGG | 0.379580 | 4.2:+68181119 | MS.gene85020:CDS |
| AAGGCATTTGCAAAGAGGTT+TGG | 0.379969 | 4.2:+68183161 | MS.gene85020:intron |
| ACTCGGCGACTCGGTCAGTC+AGG | 0.384073 | 4.2:-68180841 | None:intergenic |
| GGAAGGAAGGGAAGAGTGGT+AGG | 0.397411 | 4.2:-68180694 | None:intergenic |
| AGCTCTGATTTCCTTTAACT+TGG | 0.408724 | 4.2:-68183324 | None:intergenic |
| ATCTTCGTCGGCGGAGGAAA+GGG | 0.409438 | 4.2:+68180884 | MS.gene85020:CDS |
| ATTAAAGATGGAGAGAAGAA+TGG | 0.417845 | 4.2:+68180980 | MS.gene85020:CDS |
| GAAGAAGATGAGTGAAAGAA+AGG | 0.426703 | 4.2:-68180647 | None:intergenic |
| TGAACTCGAATCTTCTGAAT+CGG | 0.446740 | 4.2:-68180589 | None:intergenic |
| TTAAAGATGGAGAGAAGAAT+GGG | 0.455656 | 4.2:+68180981 | MS.gene85020:CDS |
| GAAATCAATGGTGGATGAGC+TGG | 0.456593 | 4.2:+68184073 | MS.gene85020:CDS |
| TATACATTTGCTGTTGAAAG+TGG | 0.475323 | 4.2:+68181145 | MS.gene85020:CDS |
| TCCTTCCGGATGACTCCATC+AGG | 0.481251 | 4.2:-68184170 | None:intergenic |
| AGATCTGCGTGGAAGGGAGA+TGG | 0.488443 | 4.2:-68180764 | None:intergenic |
| GTGGTAGATCCCCAACCTGC+TGG | 0.488649 | 4.2:+68184110 | MS.gene85020:CDS |
| GAAGATCACTGTCCTTCAAA+AGG | 0.497000 | 4.2:+68184132 | MS.gene85020:CDS |
| AGAAAGAAGATTGCGTATTG+TGG | 0.500097 | 4.2:+68181258 | MS.gene85020:CDS |
| ACAACTTTATGATCATCATC+AGG | 0.501579 | 4.2:-68181292 | None:intergenic |
| AAGAATGACGGAGGTGGTGT+TGG | 0.507188 | 4.2:+68180932 | MS.gene85020:CDS |
| ACAGTGATCTTCCAGCAGGT+TGG | 0.507749 | 4.2:-68184121 | None:intergenic |
| AAAGGTGAAGGTAATGGTAA+TGG | 0.509762 | 4.2:-68180629 | None:intergenic |
| GAGCAGATCTTCGTCGGCGG+AGG | 0.512060 | 4.2:+68180878 | MS.gene85020:CDS |
| AAGAAGAAGAATGACGGAGG+TGG | 0.515460 | 4.2:+68180926 | MS.gene85020:CDS |
| GATCTTCGTCGGCGGAGGAA+AGG | 0.518501 | 4.2:+68180883 | MS.gene85020:CDS |
| CACGAAGAGCCTTTGACCTA+CGG | 0.522271 | 4.2:-68183274 | None:intergenic |
| GGAGATTGTTCGAGGAAGGA+AGG | 0.523689 | 4.2:-68180707 | None:intergenic |
| TCGAGGAAGGAAGGGAAGAG+TGG | 0.523868 | 4.2:-68180698 | None:intergenic |
| GAAGGAAGGGAAGAGTGGTA+GGG | 0.526529 | 4.2:-68180693 | None:intergenic |
| AAGGACAGTGATCTTCCAGC+AGG | 0.527636 | 4.2:-68184125 | None:intergenic |
| GAACTCGAATCTTCTGAATC+GGG | 0.528066 | 4.2:-68180588 | None:intergenic |
| GAGATTGTTCGAGGAAGGAA+GGG | 0.532338 | 4.2:-68180706 | None:intergenic |
| ACGGATCAAATACGCTCTAA+AGG | 0.532420 | 4.2:-68183255 | None:intergenic |
| CGGTATTGAAGAATGTGAAA+TGG | 0.533682 | 4.2:+68181074 | MS.gene85020:CDS |
| GCGCAGTAGATCTGCGTGGA+AGG | 0.534421 | 4.2:-68180771 | None:intergenic |
| TGCAATAGCCAGCTCTCTAA+GGG | 0.534983 | 4.2:-68183297 | None:intergenic |
| AGTGATCTTCCAGCAGGTTG+GGG | 0.536862 | 4.2:-68184119 | None:intergenic |
| ACGGCTGAGATTAAAGGAAA+GGG | 0.537277 | 4.2:+68181097 | MS.gene85020:CDS |
| ATCAAATACGCAGCATCTTG+AGG | 0.539023 | 4.2:-68183224 | None:intergenic |
| GATGAGTGAAAGAAAGGTGA+AGG | 0.539525 | 4.2:-68180641 | None:intergenic |
| TGAAAGAAAGGTGAAGGTAA+TGG | 0.545374 | 4.2:-68180635 | None:intergenic |
| TGGACGGCTGAGATTAAAGA+TGG | 0.545423 | 4.2:+68180968 | MS.gene85020:CDS |
| TTAGAGCGTATTTGATCCGT+AGG | 0.545775 | 4.2:+68183258 | MS.gene85020:CDS |
| TAGATCTGCAAAGAAATCAA+TGG | 0.548595 | 4.2:+68184061 | MS.gene85020:CDS |
| GATCTGCGTGGAAGGGAGAT+GGG | 0.548727 | 4.2:-68180763 | None:intergenic |
| GAATCTTCTGAATCGGGACA+TGG | 0.550752 | 4.2:-68180582 | None:intergenic |
| CCTCACTGTTGATGCCATTG+AGG | 0.551515 | 4.2:+68183433 | MS.gene85020:CDS |
| ATCCGGAAGGAAATCGAAGA+AGG | 0.554549 | 4.2:+68184182 | MS.gene85020:CDS |
| TCTTCGTGCCCTTAGAGAGC+TGG | 0.556613 | 4.2:+68183289 | MS.gene85020:CDS |
| CGCAGTAGATCTGCGTGGAA+GGG | 0.565337 | 4.2:-68180770 | None:intergenic |
| CGGTGGAGATTGTTCGAGGA+AGG | 0.566940 | 4.2:-68180711 | None:intergenic |
| ATATGCCTGATGGAGTCATC+CGG | 0.568869 | 4.2:+68184165 | MS.gene85020:CDS |
| ACTAGCTATGTGGCGTCGGA+AGG | 0.569101 | 4.2:-68183363 | None:intergenic |
| GAAAGAGAAAGAGAGTGTGA+AGG | 0.571631 | 4.2:+68181225 | MS.gene85020:CDS |
| CGACGCCACATAGCTAGTGA+TGG | 0.574821 | 4.2:+68183368 | MS.gene85020:CDS |
| GACGGCTGAGATTAAAGGAA+AGG | 0.576560 | 4.2:+68181096 | MS.gene85020:CDS |
| GAAGGTAATGGTAATGGTAA+CGG | 0.579123 | 4.2:-68180623 | None:intergenic |
| TCTTCGTCGGCGGAGGAAAG+GGG | 0.580980 | 4.2:+68180885 | MS.gene85020:CDS |
| AATGGGAGGTACTACCTCAA+TGG | 0.582597 | 4.2:-68183447 | None:intergenic |
| TGATGAAGGCATTTGCAAAG+AGG | 0.583010 | 4.2:+68183156 | MS.gene85020:intron |
| CGTTTCGAGCAGATCTTCGT+CGG | 0.583140 | 4.2:+68180872 | MS.gene85020:CDS |
| CATCACTAGCTATGTGGCGT+CGG | 0.590169 | 4.2:-68183367 | None:intergenic |
| AGGACCTTTGATATGCCTGA+TGG | 0.594745 | 4.2:+68184155 | MS.gene85020:CDS |
| ATACATTTGCTGTTGAAAGT+GGG | 0.597613 | 4.2:+68181146 | MS.gene85020:CDS |
| CGAACGGTGGAGATTGTTCG+AGG | 0.597702 | 4.2:-68180715 | None:intergenic |
| GTATTTGATCCGTAGGTCAA+AGG | 0.598182 | 4.2:+68183265 | MS.gene85020:CDS |
| ATGACGGAGGTGGTGTTGGT+CGG | 0.598671 | 4.2:+68180936 | MS.gene85020:CDS |
| GAAAGAGAAGAAGAAAAGTG+CGG | 0.601117 | 4.2:+68181054 | MS.gene85020:CDS |
| CTCGGCGACTCGGTCAGTCA+GGG | 0.607221 | 4.2:-68180840 | None:intergenic |
| GACTCCATCAGGCATATCAA+AGG | 0.607706 | 4.2:-68184159 | None:intergenic |
| GTGACTCTAACTCGGCGACT+CGG | 0.617613 | 4.2:-68180850 | None:intergenic |
| TGTGTAGGGAGTTGATCTGA+TGG | 0.617974 | 4.2:+68184037 | MS.gene85020:intron |
| ATCTGCAAAGAAATCAATGG+TGG | 0.618866 | 4.2:+68184064 | MS.gene85020:CDS |
| CCACTCCATCACTAGCTATG+TGG | 0.620746 | 4.2:-68183373 | None:intergenic |
| AAGAAGAAGAAGAATGACGG+AGG | 0.621135 | 4.2:+68180923 | MS.gene85020:CDS |
| CCACATAGCTAGTGATGGAG+TGG | 0.623101 | 4.2:+68183373 | MS.gene85020:CDS |
| CTCGAAACGTGACTCTAACT+CGG | 0.626427 | 4.2:-68180858 | None:intergenic |
| TGATGAAGCTGAGAGTACCT+AGG | 0.646123 | 4.2:+68184229 | MS.gene85020:CDS |
| GCCTGATGGAGTCATCCGGA+AGG | 0.646491 | 4.2:+68184169 | MS.gene85020:CDS |
| GTGTTGGTCGGAAGTACACG+TGG | 0.648257 | 4.2:+68180948 | MS.gene85020:CDS |
| TTCGAGCAGATCTTCGTCGG+CGG | 0.651230 | 4.2:+68180875 | MS.gene85020:CDS |
| GATCACTGTCCTTCAAAAGG+AGG | 0.656472 | 4.2:+68184135 | MS.gene85020:CDS |
| CGGCTGAGATTAAAGGAAAG+GGG | 0.661383 | 4.2:+68181098 | MS.gene85020:CDS |
| TGGTCGGAAGTACACGTGGA+CGG | 0.662420 | 4.2:+68180952 | MS.gene85020:CDS |
| CTGCGTGGAAGGGAGATGGG+AGG | 0.670309 | 4.2:-68180760 | None:intergenic |
| AGATCGAGATCGATATCGAA+CGG | 0.671022 | 4.2:-68180731 | None:intergenic |
| GCTGTGAAGCAACAACAACT+CGG | 0.672377 | 4.2:+68180809 | MS.gene85020:CDS |
| GTGATGGAGTGGAACACCAG+AGG | 0.676023 | 4.2:+68183384 | MS.gene85020:CDS |
| GGCTGAGATTAAAGGAAAGG+GGG | 0.679055 | 4.2:+68181099 | MS.gene85020:CDS |
| ATTGAAGAATGTGAAATGGA+CGG | 0.703007 | 4.2:+68181078 | MS.gene85020:CDS |
| CCTCAATGGCATCAACAGTG+AGG | 0.722927 | 4.2:-68183433 | None:intergenic |
| GGAGCAGTTCAAAATCAGAG+AGG | 0.727584 | 4.2:+68183182 | MS.gene85020:CDS |
| TCGAGATCGATATCGAACGG+TGG | 0.727724 | 4.2:-68180728 | None:intergenic |
| GCTGGAAGCAATGCTTGATG+TGG | 0.729343 | 4.2:+68184091 | MS.gene85020:CDS |
| TCACGCGCAGTAGATCTGCG+TGG | 0.736300 | 4.2:-68180775 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAATTAAATTTAGATAC+TGG | + | chr4.2:68181403-68181422 | MS.gene85020:intron | 10.0% |
| !! | TTAAATTAAATTTAGATACT+GGG | + | chr4.2:68181404-68181423 | MS.gene85020:intron | 10.0% |
| !! | AAAATATGATGAATTGAATT+TGG | + | chr4.2:68182376-68182395 | MS.gene85020:intron | 15.0% |
| !! | ACAATATTCAAATATTTCAT+TGG | - | chr4.2:68183945-68183964 | None:intergenic | 15.0% |
| !! | AAATCCTCATAATTAACAAA+TGG | - | chr4.2:68182286-68182305 | None:intergenic | 20.0% |
| !! | ACGTTTCAACATAAATAAAT+TGG | + | chr4.2:68182063-68182082 | MS.gene85020:intron | 20.0% |
| !! | ACTAGTTGAATAAATTCTAA+AGG | - | chr4.2:68181637-68181656 | None:intergenic | 20.0% |
| !! | ATTTGAATATTGTTCGATAT+TGG | + | chr4.2:68183952-68183971 | MS.gene85020:intron | 20.0% |
| !! | TGTAAAACAATTCAAAAGTT+TGG | - | chr4.2:68183476-68183495 | None:intergenic | 20.0% |
| !! | TTTGAATATTGTTCGATATT+GGG | + | chr4.2:68183953-68183972 | MS.gene85020:intron | 20.0% |
| !!! | AAACTTAGAATCAATTTTTG+AGG | + | chr4.2:68181897-68181916 | MS.gene85020:intron | 20.0% |
| !!! | AAATAAATTGGTGTCTTATA+CGG | + | chr4.2:68182075-68182094 | MS.gene85020:intron | 20.0% |
| !!! | AATTCCTATATTTCCTTTTT+TGG | - | chr4.2:68183913-68183932 | None:intergenic | 20.0% |
| !!! | ATAATTGATTTTGACATGTT+TGG | - | chr4.2:68181948-68181967 | None:intergenic | 20.0% |
| !!! | CTAACTTGTAATTTTATGTT+TGG | - | chr4.2:68182010-68182029 | None:intergenic | 20.0% |
| !!! | GTCATTTATCTTTTGAAAAA+TGG | - | chr4.2:68182045-68182064 | None:intergenic | 20.0% |
| !!! | TACTCTTCTAAAATCAATTT+TGG | + | chr4.2:68181967-68181986 | MS.gene85020:intron | 20.0% |
| ! | AAAATTTATCTCACTATGTG+AGG | - | chr4.2:68183009-68183028 | None:intergenic | 25.0% |
| ! | AACAAAATACTACCATTCAT+CGG | + | chr4.2:68183985-68184004 | MS.gene85020:intron | 25.0% |
| ! | AATTCAAAAGTTTGGAGAAA+TGG | - | chr4.2:68183468-68183487 | None:intergenic | 25.0% |
| ! | AGTTGGAAACAAAAAAAGAT+AGG | + | chr4.2:68182317-68182336 | MS.gene85020:intron | 25.0% |
| ! | ATTATGAGGATTTATGATCT+TGG | + | chr4.2:68182293-68182312 | MS.gene85020:intron | 25.0% |
| ! | ATTCAAAAGTTTGGAGAAAT+GGG | - | chr4.2:68183467-68183486 | None:intergenic | 25.0% |
| ! | ATTTGAAAACAGCTGTTATT+TGG | - | chr4.2:68182116-68182135 | None:intergenic | 25.0% |
| ! | TATTAAGATTTAGATGCCAA+TGG | + | chr4.2:68182923-68182942 | MS.gene85020:intron | 25.0% |
| ! | TATTGCAAAATCCAAGTTAA+AGG | + | chr4.2:68183313-68183332 | MS.gene85020:CDS | 25.0% |
| ! | TTAAATTATGAGTCACAAGT+TGG | - | chr4.2:68182499-68182518 | None:intergenic | 25.0% |
| ! | TTTAATAAGTCAGAATGAGT+AGG | + | chr4.2:68182526-68182545 | MS.gene85020:intron | 25.0% |
| !! | AAAATTGATTCTAACATGGT+TGG | + | chr4.2:68181586-68181605 | MS.gene85020:intron | 25.0% |
| !! | ATTGATTTCAAGTGTATGTT+TGG | + | chr4.2:68181526-68181545 | MS.gene85020:intron | 25.0% |
| !! | GGTTTGATAGAAAGTATAAA+TGG | + | chr4.2:68181002-68181021 | MS.gene85020:CDS | 25.0% |
| !! | GTGTAAAATTGATTCTAACA+TGG | + | chr4.2:68181582-68181601 | MS.gene85020:intron | 25.0% |
| !! | GTTTTTCTTTGATTCCAAAT+TGG | - | chr4.2:68182891-68182910 | None:intergenic | 25.0% |
| !! | TCTTCCATTTGTTAATTATG+AGG | + | chr4.2:68182279-68182298 | MS.gene85020:intron | 25.0% |
| !! | TTGATTTCAAGTGTATGTTT+GGG | + | chr4.2:68181527-68181546 | MS.gene85020:intron | 25.0% |
| !!! | TAAAGTTGTTGTTTTAAGAC+AGG | + | chr4.2:68181306-68181325 | MS.gene85020:CDS | 25.0% |
| !!! | TAGGTATATAAGGTTTTGAA+AGG | + | chr4.2:68182545-68182564 | MS.gene85020:intron | 25.0% |
| AAATATTTGTCTCATATCCC+TGG | + | chr4.2:68182403-68182422 | MS.gene85020:intron | 30.0% | |
| AAGAAGAAGAAGAAGAATGA+CGG | + | chr4.2:68180920-68180939 | MS.gene85020:CDS | 30.0% | |
| ACAACTTTATGATCATCATC+AGG | - | chr4.2:68181295-68181314 | None:intergenic | 30.0% | |
| ACTCAAGAAATCAAACTTTG+TGG | - | chr4.2:68183773-68183792 | None:intergenic | 30.0% | |
| AGATCCTTACAATTCCAATT+TGG | + | chr4.2:68182874-68182893 | MS.gene85020:intron | 30.0% | |
| ATGTTAGATAAACCGATGAA+TGG | - | chr4.2:68184000-68184019 | None:intergenic | 30.0% | |
| ATTAAAGATGGAGAGAAGAA+TGG | + | chr4.2:68180980-68180999 | MS.gene85020:CDS | 30.0% | |
| ATTGAAGAATGTGAAATGGA+CGG | + | chr4.2:68181078-68181097 | MS.gene85020:CDS | 30.0% | |
| CTAATGATATGGCTATATTC+AGG | + | chr4.2:68182252-68182271 | MS.gene85020:intron | 30.0% | |
| CTGTATTTGCTTCAAGAATT+AGG | + | chr4.2:68183693-68183712 | MS.gene85020:intron | 30.0% | |
| GAATGTGAATGAAAAAGAGA+AGG | + | chr4.2:68181195-68181214 | MS.gene85020:CDS | 30.0% | |
| GAATTGTCTCACTAATGATA+TGG | + | chr4.2:68182241-68182260 | MS.gene85020:intron | 30.0% | |
| GATTCCAAATTGGAATTGTA+AGG | - | chr4.2:68182881-68182900 | None:intergenic | 30.0% | |
| GTAACGAGGATATTAATGAA+GGG | + | chr4.2:68181426-68181445 | MS.gene85020:intron | 30.0% | |
| GTAGCCAAAAAAGGAAATAT+AGG | + | chr4.2:68183906-68183925 | MS.gene85020:intron | 30.0% | |
| GTATAAATGGATAGCTGAAT+TGG | + | chr4.2:68181015-68181034 | MS.gene85020:CDS | 30.0% | |
| TAACGAGGATATTAATGAAG+GGG | + | chr4.2:68181427-68181446 | MS.gene85020:intron | 30.0% | |
| TAGATCTGCAAAGAAATCAA+TGG | + | chr4.2:68184061-68184080 | MS.gene85020:CDS | 30.0% | |
| TCAGAATGAGTAGGTATATA+AGG | + | chr4.2:68182535-68182554 | MS.gene85020:intron | 30.0% | |
| TTAAAGATGGAGAGAAGAAT+GGG | + | chr4.2:68180981-68181000 | MS.gene85020:CDS | 30.0% | |
| ! | AAACTGTAGTGCAATTTTTG+TGG | + | chr4.2:68183535-68183554 | MS.gene85020:intron | 30.0% |
| ! | GTGTTGGTGTTTCATATATT+AGG | + | chr4.2:68182171-68182190 | MS.gene85020:intron | 30.0% |
| ! | TAATTTTCTCAGAAAACCTC+TGG | - | chr4.2:68183403-68183422 | None:intergenic | 30.0% |
| ! | TTGCAACAACAAAGTCTTTT+TGG | - | chr4.2:68183817-68183836 | None:intergenic | 30.0% |
| ! | TTTACACCTCGAATCAATTT+TGG | - | chr4.2:68181569-68181588 | None:intergenic | 30.0% |
| !! | ATACATTTGCTGTTGAAAGT+GGG | + | chr4.2:68181146-68181165 | MS.gene85020:CDS | 30.0% |
| !! | TATACATTTGCTGTTGAAAG+TGG | + | chr4.2:68181145-68181164 | MS.gene85020:CDS | 30.0% |
| !! | TGTGCATTACTTTTCCTTTT+GGG | + | chr4.2:68182757-68182776 | MS.gene85020:intron | 30.0% |
| !! | TTTATGTTTGGTTCCACTTT+TGG | - | chr4.2:68181998-68182017 | None:intergenic | 30.0% |
| !! | TTTGGTTCTATGACAAGATT+TGG | - | chr4.2:68181790-68181809 | None:intergenic | 30.0% |
| !!! | AGATTTTTAAAACCCTAGCT+AGG | + | chr4.2:68182198-68182217 | MS.gene85020:intron | 30.0% |
| !!! | GTATATAAGGTTTTGAAAGG+TGG | + | chr4.2:68182548-68182567 | MS.gene85020:intron | 30.0% |
| AAATCAGAGAGGCAAAAAGA+AGG | + | chr4.2:68183193-68183212 | MS.gene85020:CDS | 35.0% | |
| AACGTCTAAAAGTGAGTCAA+AGG | + | chr4.2:68181808-68181827 | MS.gene85020:intron | 35.0% | |
| AATTTAGATACTGGGTAACG+AGG | + | chr4.2:68181412-68181431 | MS.gene85020:intron | 35.0% | |
| ACAAAACCAAAAGACACGTT+TGG | - | chr4.2:68181496-68181515 | None:intergenic | 35.0% | |
| AGAAAGAAGATTGCGTATTG+TGG | + | chr4.2:68181258-68181277 | MS.gene85020:CDS | 35.0% | |
| AGATTTAGATGCCAATGGTT+TGG | + | chr4.2:68182928-68182947 | MS.gene85020:intron | 35.0% | |
| ATCTGCAAAGAAATCAATGG+TGG | + | chr4.2:68184064-68184083 | MS.gene85020:CDS | 35.0% | |
| CAAAACCAAAAGACACGTTT+GGG | - | chr4.2:68181495-68181514 | None:intergenic | 35.0% | |
| CATTCAAATTTCAAACCGAC+TGG | - | chr4.2:68183842-68183861 | None:intergenic | 35.0% | |
| GAAAGAGAAGAAGAAAAGTG+CGG | + | chr4.2:68181054-68181073 | MS.gene85020:CDS | 35.0% | |
| GAAGAAGATGAGTGAAAGAA+AGG | - | chr4.2:68180650-68180669 | None:intergenic | 35.0% | |
| GGATTTATGATCTTGGAAGT+TGG | + | chr4.2:68182300-68182319 | MS.gene85020:intron | 35.0% | |
| GGTAACGAGGATATTAATGA+AGG | + | chr4.2:68181425-68181444 | MS.gene85020:intron | 35.0% | |
| TGAAAGAAAGGTGAAGGTAA+TGG | - | chr4.2:68180638-68180657 | None:intergenic | 35.0% | |
| TGAACTCGAATCTTCTGAAT+CGG | - | chr4.2:68180592-68180611 | None:intergenic | 35.0% | |
| TGTTCATTTCCTGTTGTGTA+GGG | + | chr4.2:68184023-68184042 | MS.gene85020:intron | 35.0% | |
| TTGAAGCAAATACAGACATC+TGG | - | chr4.2:68183688-68183707 | None:intergenic | 35.0% | |
| TTGTTCATTTCCTGTTGTGT+AGG | + | chr4.2:68184022-68184041 | MS.gene85020:intron | 35.0% | |
| TTTGCTGCATTATCATAGTG+TGG | + | chr4.2:68183884-68183903 | MS.gene85020:intron | 35.0% | |
| ! | AAAGGTGAAGGTAATGGTAA+TGG | - | chr4.2:68180632-68180651 | None:intergenic | 35.0% |
| ! | AACAGTTGCAAAATCGACTT+TGG | + | chr4.2:68183653-68183672 | MS.gene85020:intron | 35.0% |
| ! | AGCTCTGATTTCCTTTAACT+TGG | - | chr4.2:68183327-68183346 | None:intergenic | 35.0% |
| ! | CGGTATTGAAGAATGTGAAA+TGG | + | chr4.2:68181074-68181093 | MS.gene85020:CDS | 35.0% |
| ! | TAAATTGGTGTCTTATACGG+TGG | + | chr4.2:68182078-68182097 | MS.gene85020:intron | 35.0% |
| !! | ACCTTCAACTCACTTTTAGT+CGG | + | chr4.2:68181747-68181766 | MS.gene85020:intron | 35.0% |
| !! | ACTAACTTGCTTGATGATGA+AGG | + | chr4.2:68183142-68183161 | MS.gene85020:intron | 35.0% |
| !! | GAAGGTAATGGTAATGGTAA+CGG | - | chr4.2:68180626-68180645 | None:intergenic | 35.0% |
| !! | GATACTAGCATTGACAACAA+CGG | - | chr4.2:68182144-68182163 | None:intergenic | 35.0% |
| !! | GTGTGCATTACTTTTCCTTT+TGG | + | chr4.2:68182756-68182775 | MS.gene85020:intron | 35.0% |
| !! | TTGACTCACTTTTAGACGTT+TGG | - | chr4.2:68181808-68181827 | None:intergenic | 35.0% |
| !!! | AAACGTGTCTTTTGGTTTTG+TGG | + | chr4.2:68181495-68181514 | MS.gene85020:intron | 35.0% |
| !!! | TTTTTTGCTGTGACTTGATG+TGG | + | chr4.2:68182452-68182471 | MS.gene85020:intron | 35.0% |
| AAATGGACGGCTGAGATTAA+AGG | + | chr4.2:68181091-68181110 | MS.gene85020:CDS | 40.0% | |
| AAGAAGAAGAAGAATGACGG+AGG | + | chr4.2:68180923-68180942 | MS.gene85020:CDS | 40.0% | |
| ACGGATCAAATACGCTCTAA+AGG | - | chr4.2:68183258-68183277 | None:intergenic | 40.0% | |
| ACGGCTGAGATTAAAGGAAA+GGG | + | chr4.2:68181097-68181116 | MS.gene85020:CDS | 40.0% | |
| AGATCGAGATCGATATCGAA+CGG | - | chr4.2:68180734-68180753 | None:intergenic | 40.0% | |
| ATCAAATACGCAGCATCTTG+AGG | - | chr4.2:68183227-68183246 | None:intergenic | 40.0% | |
| CAAAAGTTTGGAGAAATGGG+AGG | - | chr4.2:68183464-68183483 | None:intergenic | 40.0% | |
| CATAGTGTGGTAGCCAAAAA+AGG | + | chr4.2:68183897-68183916 | MS.gene85020:intron | 40.0% | |
| CCATGTAGAACTGTAACACA+CGG | - | chr4.2:68182804-68182823 | None:intergenic | 40.0% | |
| CGTGTGTTACAGTTCTACAT+GGG | + | chr4.2:68182802-68182821 | MS.gene85020:intron | 40.0% | |
| GAACTCGAATCTTCTGAATC+GGG | - | chr4.2:68180591-68180610 | None:intergenic | 40.0% | |
| GAAGATCACTGTCCTTCAAA+AGG | + | chr4.2:68184132-68184151 | MS.gene85020:CDS | 40.0% | |
| GATGAGTGAAAGAAAGGTGA+AGG | - | chr4.2:68180644-68180663 | None:intergenic | 40.0% | |
| GCAAAATTCTGAATGTCACG+TGG | - | chr4.2:68183869-68183888 | None:intergenic | 40.0% | |
| GCTAGTATCATGCAATGTGT+TGG | + | chr4.2:68182155-68182174 | MS.gene85020:intron | 40.0% | |
| GTATTTGATCCGTAGGTCAA+AGG | + | chr4.2:68183265-68183284 | MS.gene85020:CDS | 40.0% | |
| TATGATACAAGCTCTCGTCA+AGG | - | chr4.2:68183564-68183583 | None:intergenic | 40.0% | |
| TATTTGTCTCATATCCCTGG+TGG | + | chr4.2:68182406-68182425 | MS.gene85020:intron | 40.0% | |
| TGAACACTTAACACTGAAGG+TGG | + | chr4.2:68181450-68181469 | MS.gene85020:intron | 40.0% | |
| TGTATGTTTGGGTCTACTTC+TGG | + | chr4.2:68181538-68181557 | MS.gene85020:intron | 40.0% | |
| TTAAAACCCTAGCTAGGACA+GGG | + | chr4.2:68182204-68182223 | MS.gene85020:intron | 40.0% | |
| TTAGAGCGTATTTGATCCGT+AGG | + | chr4.2:68183258-68183277 | MS.gene85020:CDS | 40.0% | |
| ! | AAGGCATTTGCAAAGAGGTT+TGG | + | chr4.2:68183161-68183180 | MS.gene85020:intron | 40.0% |
| ! | ATCAAAGGTCCTCCTTTTGA+AGG | - | chr4.2:68184147-68184166 | None:intergenic | 40.0% |
| ! | GAAAGAGAAAGAGAGTGTGA+AGG | + | chr4.2:68181225-68181244 | MS.gene85020:CDS | 40.0% |
| ! | TCCGACTAAAAGTGAGTTGA+AGG | - | chr4.2:68181751-68181770 | None:intergenic | 40.0% |
| ! | TTTAAAACCCTAGCTAGGAC+AGG | + | chr4.2:68182203-68182222 | MS.gene85020:intron | 40.0% |
| !! | ATGTTTGGTTCCACTTTTGG+AGG | - | chr4.2:68181995-68182014 | None:intergenic | 40.0% |
| !! | CATGTTGATAGCCAAACCAT+TGG | - | chr4.2:68182942-68182961 | None:intergenic | 40.0% |
| !! | GATAGGCCAAAATTGATTCG+AGG | + | chr4.2:68181560-68181579 | MS.gene85020:intron | 40.0% |
| !! | TGATGAAGGCATTTGCAAAG+AGG | + | chr4.2:68183156-68183175 | MS.gene85020:intron | 40.0% |
| !! | TTTGTTGTTGCAAGACCAGT+CGG | + | chr4.2:68183824-68183843 | MS.gene85020:intron | 40.0% |
| !!! | AATTTTGGCTCCTCCAAAAG+TGG | + | chr4.2:68181982-68182001 | MS.gene85020:intron | 40.0% |
| AAAGGAAAGGGGGAAGATAG+TGG | + | chr4.2:68181109-68181128 | MS.gene85020:CDS | 45.0% | |
| AAGGAAAGGGGGAAGATAGT+GGG | + | chr4.2:68181110-68181129 | MS.gene85020:CDS | 45.0% | |
| ACAAAACCCTGTCCTAGCTA+GGG | - | chr4.2:68182213-68182232 | None:intergenic | 45.0% | |
| AGATCAACTCCCTACACAAC+AGG | - | chr4.2:68184035-68184054 | None:intergenic | 45.0% | |
| AGGACCTTTGATATGCCTGA+TGG | + | chr4.2:68184155-68184174 | MS.gene85020:CDS | 45.0% | |
| ATATGCCTGATGGAGTCATC+CGG | + | chr4.2:68184165-68184184 | MS.gene85020:CDS | 45.0% | |
| ATCCGGAAGGAAATCGAAGA+AGG | + | chr4.2:68184182-68184201 | MS.gene85020:CDS | 45.0% | |
| CACCTTCTTCGATTTCCTTC+CGG | - | chr4.2:68184187-68184206 | None:intergenic | 45.0% | |
| CCGTGTGTTACAGTTCTACA+TGG | + | chr4.2:68182801-68182820 | MS.gene85020:intron | 45.0% | |
| CCTGGTGGTATGGCAAAATA+GGG | + | chr4.2:68182421-68182440 | MS.gene85020:intron | 45.0% | |
| CGGCTGAGATTAAAGGAAAG+GGG | + | chr4.2:68181098-68181117 | MS.gene85020:CDS | 45.0% | |
| CTCGAAACGTGACTCTAACT+CGG | - | chr4.2:68180861-68180880 | None:intergenic | 45.0% | |
| CTTAACACTGAAGGTGGACA+CGG | + | chr4.2:68181456-68181475 | MS.gene85020:intron | 45.0% | |
| GACGGCTGAGATTAAAGGAA+AGG | + | chr4.2:68181096-68181115 | MS.gene85020:CDS | 45.0% | |
| GACTCCATCAGGCATATCAA+AGG | - | chr4.2:68184162-68184181 | None:intergenic | 45.0% | |
| GAGATTGTTCGAGGAAGGAA+GGG | - | chr4.2:68180709-68180728 | None:intergenic | 45.0% | |
| GATCACTGTCCTTCAAAAGG+AGG | + | chr4.2:68184135-68184154 | MS.gene85020:CDS | 45.0% | |
| GCTGTGAAGCAACAACAACT+CGG | + | chr4.2:68180809-68180828 | MS.gene85020:CDS | 45.0% | |
| GGAGCAGTTCAAAATCAGAG+AGG | + | chr4.2:68183182-68183201 | MS.gene85020:CDS | 45.0% | |
| GGCTCATTTCTCCCCAAATT+CGG | + | chr4.2:68182778-68182797 | MS.gene85020:intron | 45.0% | |
| GGCTGAGATTAAAGGAAAGG+GGG | + | chr4.2:68181099-68181118 | MS.gene85020:CDS | 45.0% | |
| GGGTGAACACTTAACACTGA+AGG | + | chr4.2:68181447-68181466 | MS.gene85020:intron | 45.0% | |
| GTTTGGGTCTACTTCTGGAT+AGG | + | chr4.2:68181543-68181562 | MS.gene85020:intron | 45.0% | |
| TGCAATAGCCAGCTCTCTAA+GGG | - | chr4.2:68183300-68183319 | None:intergenic | 45.0% | |
| TGGACGGCTGAGATTAAAGA+TGG | + | chr4.2:68180968-68180987 | MS.gene85020:CDS | 45.0% | |
| TGTAACACACGGCCGAATTT+GGG | - | chr4.2:68182793-68182812 | None:intergenic | 45.0% | |
| TTGCAATAGCCAGCTCTCTA+AGG | - | chr4.2:68183301-68183320 | None:intergenic | 45.0% | |
| ! | AAGAAGAAGAATGACGGAGG+TGG | + | chr4.2:68180926-68180945 | MS.gene85020:CDS | 45.0% |
| ! | CCTATTTTGCCATACCACCA+GGG | - | chr4.2:68182423-68182442 | None:intergenic | 45.0% |
| ! | TGACACCCAAACGTGTCTTT+TGG | + | chr4.2:68181487-68181506 | MS.gene85020:intron | 45.0% |
| ! | TGTGTAGGGAGTTGATCTGA+TGG | + | chr4.2:68184037-68184056 | MS.gene85020:intron | 45.0% |
| !! | AATGGGAGGTACTACCTCAA+TGG | - | chr4.2:68183450-68183469 | None:intergenic | 45.0% |
| !! | GAAATCAATGGTGGATGAGC+TGG | + | chr4.2:68184073-68184092 | MS.gene85020:CDS | 45.0% |
| !! | GGGAAGATAGTGGGAATGAT+AGG | + | chr4.2:68181119-68181138 | MS.gene85020:CDS | 45.0% |
| AAGGACAGTGATCTTCCAGC+AGG | - | chr4.2:68184128-68184147 | None:intergenic | 50.0% | |
| ACAGTGATCTTCCAGCAGGT+TGG | - | chr4.2:68184124-68184143 | None:intergenic | 50.0% | |
| AGGGAAGAGTGGTAGGGTTT+CGG | - | chr4.2:68180690-68180709 | None:intergenic | 50.0% | |
| AGTGATCTTCCAGCAGGTTG+GGG | - | chr4.2:68184122-68184141 | None:intergenic | 50.0% | |
| CACAAAACCCTGTCCTAGCT+AGG | - | chr4.2:68182214-68182233 | None:intergenic | 50.0% | |
| CACGAAGAGCCTTTGACCTA+CGG | - | chr4.2:68183277-68183296 | None:intergenic | 50.0% | |
| CAGTGATCTTCCAGCAGGTT+GGG | - | chr4.2:68184123-68184142 | None:intergenic | 50.0% | |
| CATCACTAGCTATGTGGCGT+CGG | - | chr4.2:68183370-68183389 | None:intergenic | 50.0% | |
| CCACTCCATCACTAGCTATG+TGG | - | chr4.2:68183376-68183395 | None:intergenic | 50.0% | |
| CCCTGGTGGTATGGCAAAAT+AGG | + | chr4.2:68182420-68182439 | MS.gene85020:intron | 50.0% | |
| CCTCAATGGCATCAACAGTG+AGG | - | chr4.2:68183436-68183455 | None:intergenic | 50.0% | |
| CCTCACTGTTGATGCCATTG+AGG | + | chr4.2:68183433-68183452 | MS.gene85020:CDS | 50.0% | |
| CGTTTCGAGCAGATCTTCGT+CGG | + | chr4.2:68180872-68180891 | MS.gene85020:CDS | 50.0% | |
| CTGTAACACACGGCCGAATT+TGG | - | chr4.2:68182794-68182813 | None:intergenic | 50.0% | |
| GAAGGAAGGGAAGAGTGGTA+GGG | - | chr4.2:68180696-68180715 | None:intergenic | 50.0% | |
| GCTGGAAGCAATGCTTGATG+TGG | + | chr4.2:68184091-68184110 | MS.gene85020:CDS | 50.0% | |
| GGAGATTGTTCGAGGAAGGA+AGG | - | chr4.2:68180710-68180729 | None:intergenic | 50.0% | |
| GTAACACACGGCCGAATTTG+GGG | - | chr4.2:68182792-68182811 | None:intergenic | 50.0% | |
| GTCTCATATCCCTGGTGGTA+TGG | + | chr4.2:68182411-68182430 | MS.gene85020:intron | 50.0% | |
| TCGAGATCGATATCGAACGG+TGG | - | chr4.2:68180731-68180750 | None:intergenic | 50.0% | |
| TGGGGAGAAATGAGCCCAAA+AGG | - | chr4.2:68182774-68182793 | None:intergenic | 50.0% | |
| ! | AAGAATGACGGAGGTGGTGT+TGG | + | chr4.2:68180932-68180951 | MS.gene85020:CDS | 50.0% |
| ! | CCACATAGCTAGTGATGGAG+TGG | + | chr4.2:68183373-68183392 | MS.gene85020:CDS | 50.0% |
| ! | CCCTATTTTGCCATACCACC+AGG | - | chr4.2:68182424-68182443 | None:intergenic | 50.0% |
| AGATCTGCGTGGAAGGGAGA+TGG | - | chr4.2:68180767-68180786 | None:intergenic | 55.0% | |
| ATCTTCGTCGGCGGAGGAAA+GGG | + | chr4.2:68180884-68180903 | MS.gene85020:CDS | 55.0% | |
| CGAACGGTGGAGATTGTTCG+AGG | - | chr4.2:68180718-68180737 | None:intergenic | 55.0% | |
| CGACGCCACATAGCTAGTGA+TGG | + | chr4.2:68183368-68183387 | MS.gene85020:CDS | 55.0% | |
| CGCAGTAGATCTGCGTGGAA+GGG | - | chr4.2:68180773-68180792 | None:intergenic | 55.0% | |
| CGGTGGAGATTGTTCGAGGA+AGG | - | chr4.2:68180714-68180733 | None:intergenic | 55.0% | |
| GATCTGCGTGGAAGGGAGAT+GGG | - | chr4.2:68180766-68180785 | None:intergenic | 55.0% | |
| GGAAGGAAGGGAAGAGTGGT+AGG | - | chr4.2:68180697-68180716 | None:intergenic | 55.0% | |
| GTGACTCTAACTCGGCGACT+CGG | - | chr4.2:68180853-68180872 | None:intergenic | 55.0% | |
| TCCTTCCGGATGACTCCATC+AGG | - | chr4.2:68184173-68184192 | None:intergenic | 55.0% | |
| TCGAGGAAGGAAGGGAAGAG+TGG | - | chr4.2:68180701-68180720 | None:intergenic | 55.0% | |
| TCTTCGTGCCCTTAGAGAGC+TGG | + | chr4.2:68183289-68183308 | MS.gene85020:CDS | 55.0% | |
| TTCGAGCAGATCTTCGTCGG+CGG | + | chr4.2:68180875-68180894 | MS.gene85020:CDS | 55.0% | |
| ! | ACTAGCTATGTGGCGTCGGA+AGG | - | chr4.2:68183366-68183385 | None:intergenic | 55.0% |
| ! | GTGATGGAGTGGAACACCAG+AGG | + | chr4.2:68183384-68183403 | MS.gene85020:CDS | 55.0% |
| ! | GTGTTGGTCGGAAGTACACG+TGG | + | chr4.2:68180948-68180967 | MS.gene85020:CDS | 55.0% |
| ! | TGGTCGGAAGTACACGTGGA+CGG | + | chr4.2:68180952-68180971 | MS.gene85020:CDS | 55.0% |
| !! | ATGACGGAGGTGGTGTTGGT+CGG | + | chr4.2:68180936-68180955 | MS.gene85020:CDS | 55.0% |
| GATCTTCGTCGGCGGAGGAA+AGG | + | chr4.2:68180883-68180902 | MS.gene85020:CDS | 60.0% | |
| GCCTGATGGAGTCATCCGGA+AGG | + | chr4.2:68184169-68184188 | MS.gene85020:CDS | 60.0% | |
| GCGCAGTAGATCTGCGTGGA+AGG | - | chr4.2:68180774-68180793 | None:intergenic | 60.0% | |
| GTGGTAGATCCCCAACCTGC+TGG | + | chr4.2:68184110-68184129 | MS.gene85020:CDS | 60.0% | |
| TCACGCGCAGTAGATCTGCG+TGG | - | chr4.2:68180778-68180797 | None:intergenic | 60.0% | |
| TCTTCGTCGGCGGAGGAAAG+GGG | + | chr4.2:68180885-68180904 | MS.gene85020:CDS | 60.0% | |
| CTGCGTGGAAGGGAGATGGG+AGG | - | chr4.2:68180763-68180782 | None:intergenic | 65.0% | |
| GAGCAGATCTTCGTCGGCGG+AGG | + | chr4.2:68180878-68180897 | MS.gene85020:CDS | 65.0% | |
| !! | ACTCGGCGACTCGGTCAGTC+AGG | - | chr4.2:68180844-68180863 | None:intergenic | 65.0% |
| !! | CTCGGCGACTCGGTCAGTCA+GGG | - | chr4.2:68180843-68180862 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 68180584 | 68184250 | 68180584 | ID=MS.gene85020 |
| chr4.2 | mRNA | 68180584 | 68184250 | 68180584 | ID=MS.gene85020.t1;Parent=MS.gene85020 |
| chr4.2 | exon | 68180584 | 68181327 | 68180584 | ID=MS.gene85020.t1.exon1;Parent=MS.gene85020.t1 |
| chr4.2 | CDS | 68180584 | 68181327 | 68180584 | ID=cds.MS.gene85020.t1;Parent=MS.gene85020.t1 |
| chr4.2 | exon | 68183164 | 68183454 | 68183164 | ID=MS.gene85020.t1.exon2;Parent=MS.gene85020.t1 |
| chr4.2 | CDS | 68183164 | 68183454 | 68183164 | ID=cds.MS.gene85020.t1;Parent=MS.gene85020.t1 |
| chr4.2 | exon | 68184044 | 68184250 | 68184044 | ID=MS.gene85020.t1.exon3;Parent=MS.gene85020.t1 |
| chr4.2 | CDS | 68184044 | 68184250 | 68184044 | ID=cds.MS.gene85020.t1;Parent=MS.gene85020.t1 |
| Gene Sequence |
| Protein sequence |
