Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85224.t1 | XP_003597586.1 | 90.5 | 610 | 54 | 4 | 1 | 608 | 1 | 608 | 0.00E+00 | 1077.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85224.t1 | Q2HVD6 | 90.5 | 610 | 54 | 4 | 1 | 608 | 1 | 608 | 0.0e+00 | 1077.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85224.t1 | G7IUG5 | 90.5 | 610 | 54 | 4 | 1 | 608 | 1 | 608 | 0.0e+00 | 1077.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene85224 | MS.gene01671 | PPI |
| MS.gene49127 | MS.gene85224 | PPI |
| MS.gene85224 | MS.gene002130 | PPI |
| MS.gene061149 | MS.gene85224 | PPI |
| MS.gene85224 | MS.gene006257 | PPI |
| MS.gene047123 | MS.gene85224 | PPI |
| MS.gene85224 | MS.gene34132 | PPI |
| MS.gene85224 | MS.gene071985 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85224.t1 | MTR_2g099870 | 92.951 | 610 | 39 | 4 | 1 | 608 | 1 | 608 | 0.0 | 1139 |
| MS.gene85224.t1 | MTR_8g104280 | 84.841 | 409 | 42 | 2 | 237 | 625 | 342 | 750 | 0.0 | 733 |
| MS.gene85224.t1 | MTR_8g104280 | 72.388 | 268 | 56 | 5 | 1 | 253 | 1 | 265 | 2.48e-100 | 322 |
| MS.gene85224.t1 | MTR_1g100210 | 35.526 | 228 | 126 | 8 | 372 | 578 | 671 | 898 | 1.38e-33 | 137 |
| MS.gene85224.t1 | MTR_4g025460 | 56.637 | 113 | 34 | 3 | 503 | 615 | 38 | 135 | 5.39e-23 | 97.1 |
| MS.gene85224.t1 | MTR_4g025470 | 55.422 | 83 | 36 | 1 | 114 | 196 | 1520 | 1601 | 3.01e-16 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85224.t1 | AT4G10760 | 73.810 | 378 | 93 | 2 | 229 | 606 | 308 | 679 | 0.0 | 586 |
| MS.gene85224.t1 | AT4G10760 | 49.339 | 227 | 90 | 5 | 1 | 208 | 1 | 221 | 9.82e-53 | 192 |
| MS.gene85224.t1 | AT4G09980 | 35.885 | 209 | 99 | 10 | 385 | 565 | 617 | 818 | 3.85e-29 | 124 |
| MS.gene85224.t1 | AT4G09980 | 35.404 | 161 | 71 | 9 | 385 | 519 | 617 | 770 | 1.08e-17 | 87.8 |
Find 152 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGAGCTTGCTGGAGATTC+AGG | 0.173970 | 2.4:-4490592 | MS.gene85224:CDS |
| TGCAACCGATAGTATGAATT+TGG | 0.207772 | 2.4:-4490344 | MS.gene85224:CDS |
| TTCCACTTTATCTAGGAAAT+TGG | 0.217318 | 2.4:-4490656 | MS.gene85224:CDS |
| TAATTAATAAGAAATCATTT+AGG | 0.231898 | 2.4:-4490306 | MS.gene85224:CDS |
| CGCTGCTGCCTTAGTGGTTT+GGG | 0.233678 | 2.4:+4489941 | None:intergenic |
| AGGACTGAGGGCAAGGTTTA+AGG | 0.250405 | 2.4:-4489321 | MS.gene85224:CDS |
| CTGGCTTTCTGCTTGTTTCC+CGG | 0.257645 | 2.4:+4489477 | None:intergenic |
| CAACTCCACCTTTCTTGTTC+CGG | 0.271026 | 2.4:+4489421 | None:intergenic |
| TGGAGAGATGATTTCGATTT+GGG | 0.273839 | 2.4:+4490835 | None:intergenic |
| TTGGAGAGATGATTTCGATT+TGG | 0.288507 | 2.4:+4490834 | None:intergenic |
| AACTCCACCTTTCTTGTTCC+GGG | 0.291160 | 2.4:+4489422 | None:intergenic |
| CGATTTGGGAGGGTTGAAAT+AGG | 0.298630 | 2.4:+4490849 | None:intergenic |
| ACATTGTCTTGTTGGGATAA+AGG | 0.301011 | 2.4:-4489552 | MS.gene85224:CDS |
| TCTTCATACTGACATTAGTT+TGG | 0.301506 | 2.4:-4490077 | MS.gene85224:CDS |
| TTATTCAGACTCCAAGTATA+AGG | 0.302457 | 2.4:-4490243 | MS.gene85224:CDS |
| AATTAATAAGAAATCATTTA+GGG | 0.304246 | 2.4:-4490305 | MS.gene85224:CDS |
| ATGGACATATTAGGTAAGTT+TGG | 0.307068 | 2.4:-4489848 | MS.gene85224:CDS |
| TCAATGTTTCTGTTTACTTC+AGG | 0.308190 | 2.4:+4489524 | None:intergenic |
| TTGATTCTTCCACTTTATCT+AGG | 0.314013 | 2.4:-4490663 | MS.gene85224:CDS |
| ACGCTGCTGCCTTAGTGGTT+TGG | 0.325085 | 2.4:+4489940 | None:intergenic |
| TCGAGAGAAGAAACAAAATT+AGG | 0.331810 | 2.4:+4490934 | None:intergenic |
| AACTTTAGAATGGACATATT+AGG | 0.337914 | 2.4:-4489857 | MS.gene85224:CDS |
| GGACTAACTTTCTCTGATAC+TGG | 0.341985 | 2.4:+4490748 | None:intergenic |
| AGTTGATGTTGTGCAGTTTC+AGG | 0.342869 | 2.4:+4490427 | None:intergenic |
| ATCATTGTTGGAGGCAAATC+AGG | 0.343274 | 2.4:+4489980 | None:intergenic |
| CTTCATACTGACATTAGTTT+GGG | 0.344638 | 2.4:-4490076 | MS.gene85224:CDS |
| GGAGGGTTGAAATAGGTTAG+AGG | 0.347303 | 2.4:+4490856 | None:intergenic |
| CATTGTCTTGTTGGGATAAA+GGG | 0.350805 | 2.4:-4489551 | MS.gene85224:CDS |
| AGGTAAGTTTGGAGTAATAA+TGG | 0.355596 | 2.4:-4489837 | MS.gene85224:CDS |
| TTTGTTGGTAAGTCACAATA+TGG | 0.356763 | 2.4:+4490169 | None:intergenic |
| ATGTTATTGTTTCTGAAGTC+CGG | 0.366102 | 2.4:-4489496 | MS.gene85224:CDS |
| ATTGATTCTGTGACGGCAAA+TGG | 0.373705 | 2.4:+4489206 | None:intergenic |
| GCTGGCTGCACCTCCACATC+TGG | 0.374605 | 2.4:+4489290 | None:intergenic |
| ATTCACATGGAGCTGCCTTA+TGG | 0.374787 | 2.4:-4489797 | MS.gene85224:CDS |
| TGCCTTAGTGGTTTGGGAGG+AGG | 0.388533 | 2.4:+4489947 | None:intergenic |
| TCAGCACGCTGCTGCCTTAG+TGG | 0.392884 | 2.4:+4489935 | None:intergenic |
| GCCACATTTCAAGAGCTTGC+TGG | 0.400392 | 2.4:-4490601 | MS.gene85224:CDS |
| ACGAGAATGCTTAGAACGTT+GGG | 0.403991 | 2.4:-4489675 | MS.gene85224:CDS |
| ACTGGGCGTGCGATGGAACT+TGG | 0.415975 | 2.4:-4489698 | MS.gene85224:CDS |
| AGAGAAAGTTAGTCCTTTGT+CGG | 0.420263 | 2.4:-4490740 | MS.gene85224:CDS |
| CTCCAATTTCCTAGATAAAG+TGG | 0.425057 | 2.4:+4490654 | None:intergenic |
| AGATGAGATGTATGCTTTGT+TGG | 0.426898 | 2.4:-4489456 | MS.gene85224:CDS |
| AAGAGAGAACTTTGAGAGAA+AGG | 0.436417 | 2.4:+4490911 | None:intergenic |
| CTTCAGCGAATAATTAGAAC+TGG | 0.443807 | 2.4:-4489608 | MS.gene85224:CDS |
| GCAAGGAACATTGTCTTGTT+GGG | 0.448473 | 2.4:-4489559 | MS.gene85224:CDS |
| TGTTCATATGTGACTTGTGT+TGG | 0.449891 | 2.4:+4490983 | None:intergenic |
| AGCAAGGAACATTGTCTTGT+TGG | 0.450367 | 2.4:-4489560 | MS.gene85224:CDS |
| CGCATGCACAATACTCATGC+AGG | 0.450816 | 2.4:-4489392 | MS.gene85224:CDS |
| GTTCATATGTGACTTGTGTT+GGG | 0.451417 | 2.4:+4490984 | None:intergenic |
| TTGGAAGAGTTTGCTGTAAG+TGG | 0.460670 | 2.4:-4490505 | MS.gene85224:CDS |
| TGATATTCGTAACTTTAGAA+TGG | 0.461970 | 2.4:-4489867 | MS.gene85224:CDS |
| TGAAATGTGGCTTTGTCTTG+TGG | 0.462895 | 2.4:+4490613 | None:intergenic |
| TGATAATGGTGCTGTCGAAT+TGG | 0.462983 | 2.4:-4490524 | MS.gene85224:CDS |
| ATGGTAATATGAATCAAAAT+CGG | 0.465303 | 2.4:-4490375 | MS.gene85224:CDS |
| CCTTGCTGTGATTGAGCCAA+TGG | 0.469816 | 2.4:+4489576 | None:intergenic |
| AACAAAGCATACATCTCATC+TGG | 0.470575 | 2.4:+4489458 | None:intergenic |
| CTTAGTGGTTTGGGAGGAGG+AGG | 0.471885 | 2.4:+4489950 | None:intergenic |
| AAGCTTATTACATGCTGTAA+AGG | 0.473184 | 2.4:+4490120 | None:intergenic |
| TCATCCGCCATTGTTCCATA+AGG | 0.473808 | 2.4:+4489782 | None:intergenic |
| AATGTGTTGAGGAGATCATT+TGG | 0.474261 | 2.4:-4489646 | MS.gene85224:CDS |
| TATTCAGACTCCAAGTATAA+GGG | 0.476845 | 2.4:-4490242 | MS.gene85224:CDS |
| GGCTTTGTCTTGTGGTGTAA+AGG | 0.481183 | 2.4:+4490621 | None:intergenic |
| ATGTGTTGAGGAGATCATTT+GGG | 0.482047 | 2.4:-4489645 | MS.gene85224:CDS |
| GAAGAATCAATTTCCACAAA+AGG | 0.485391 | 2.4:+4490676 | None:intergenic |
| GTCGCTGCTCTACAAACTCA+TGG | 0.485915 | 2.4:-4489740 | MS.gene85224:CDS |
| GGAGGAGCACACATCATTGT+TGG | 0.486546 | 2.4:+4489968 | None:intergenic |
| GAAGCTCTGGAAGGTGATGC+TGG | 0.487242 | 2.4:+4489272 | None:intergenic |
| TGCCGACAAGTACGGAGAAA+AGG | 0.488782 | 2.4:+4490046 | None:intergenic |
| TACCTCCATAGCAGAAGCTC+TGG | 0.490182 | 2.4:+4489259 | None:intergenic |
| GCTGCTAAGTTCAAAACTAA+AGG | 0.497853 | 2.4:-4490208 | MS.gene85224:CDS |
| CGAGATAGCTTTGAGGTCAA+TGG | 0.501626 | 2.4:-4490551 | MS.gene85224:CDS |
| CATGCAGGGTGGATGTCTCT+TGG | 0.503152 | 2.4:-4489377 | MS.gene85224:CDS |
| AGGGTTGAAATAGGTTAGAG+GGG | 0.504459 | 2.4:+4490858 | None:intergenic |
| GAAGATTGTCGACGCCGGAC+TGG | 0.504746 | 2.4:-4490145 | MS.gene85224:CDS |
| ACAGCAGCCTCCCTTATACT+TGG | 0.506226 | 2.4:+4490232 | None:intergenic |
| TTTGTCGGTTGTTCGATCGA+TGG | 0.506699 | 2.4:-4490725 | MS.gene85224:CDS |
| TTAGTTAGTGTCCACATCAA+TGG | 0.509598 | 2.4:+4489181 | None:intergenic |
| CAGGCAATTCTCTCAATAGA+CGG | 0.510857 | 2.4:+4490446 | None:intergenic |
| GTAATCAATTGAGTGGTGTA+AGG | 0.515019 | 2.4:-4489355 | MS.gene85224:CDS |
| AGGTCAATGGCAGATGATAA+TGG | 0.515834 | 2.4:-4490538 | MS.gene85224:CDS |
| ACCTTCCAGAGCTTCTGCTA+TGG | 0.519159 | 2.4:-4489264 | MS.gene85224:CDS |
| ATTTGCCGTCACAGAATCAA+TGG | 0.519806 | 2.4:-4489204 | MS.gene85224:CDS |
| ATGGGTCACTGGGCGTGCGA+TGG | 0.523044 | 2.4:-4489705 | MS.gene85224:CDS |
| TTGCAGTCGAGATAGCTTTG+AGG | 0.526784 | 2.4:-4490558 | MS.gene85224:CDS |
| TCAATTGAGTGGTGTAAGGT+TGG | 0.527221 | 2.4:-4489351 | MS.gene85224:CDS |
| ATAATTAGAACTGGACGTAC+AGG | 0.527626 | 2.4:-4489599 | MS.gene85224:CDS |
| GAGATGATTTCGATTTGGGA+GGG | 0.527822 | 2.4:+4490839 | None:intergenic |
| GACGAGAATGCTTAGAACGT+TGG | 0.531111 | 2.4:-4489676 | MS.gene85224:CDS |
| TATTGTTCTGAAGTGGAACT+AGG | 0.531691 | 2.4:-4489911 | MS.gene85224:CDS |
| TGTTATTGTTTCTGAAGTCC+GGG | 0.532244 | 2.4:-4489495 | MS.gene85224:CDS |
| GGTGTAAGGTTGGTGGATGA+AGG | 0.532735 | 2.4:-4489341 | MS.gene85224:CDS |
| CTCCTCCTCCCAAACCACTA+AGG | 0.533869 | 2.4:-4489949 | MS.gene85224:CDS |
| TGTTCATGTGCCGACAAGTA+CGG | 0.536396 | 2.4:+4490038 | None:intergenic |
| AGGCAATTCTCTCAATAGAC+GGG | 0.537064 | 2.4:+4490447 | None:intergenic |
| GTTGGAGGCAAATCAGGTGT+AGG | 0.545838 | 2.4:+4489986 | None:intergenic |
| AAGTGGCAAATCAAGAATCA+TGG | 0.546831 | 2.4:-4490488 | MS.gene85224:CDS |
| ATTGAGTGGTGTAAGGTTGG+TGG | 0.548045 | 2.4:-4489348 | MS.gene85224:CDS |
| ATGTAAATATGTTCACTATG+AGG | 0.549551 | 2.4:-4490014 | MS.gene85224:CDS |
| GATAAGTCCCGGAACAAGAA+AGG | 0.550130 | 2.4:-4489429 | MS.gene85224:CDS |
| ATCCTCCAAATTCATACTAT+CGG | 0.550759 | 2.4:+4490339 | None:intergenic |
| ATCGATCGAACAACCGACAA+AGG | 0.555565 | 2.4:+4490727 | None:intergenic |
| CTAGTGTTGCTGCTCAAACA+AGG | 0.557349 | 2.4:-4489232 | MS.gene85224:CDS |
| TCATTCATCATCAATGGAGA+TGG | 0.558757 | 2.4:-4491049 | None:intergenic |
| AACCGATAGTATGAATTTGG+AGG | 0.560456 | 2.4:-4490341 | MS.gene85224:CDS |
| AGAATCAATGGCCATTGATG+TGG | 0.562896 | 2.4:-4489192 | MS.gene85224:CDS |
| GAACTGGACGTACAGGCCAT+TGG | 0.563336 | 2.4:-4489592 | MS.gene85224:CDS |
| GGGTTGAAATAGGTTAGAGG+GGG | 0.564873 | 2.4:+4490859 | None:intergenic |
| AGAGATGATTTCGATTTGGG+AGG | 0.566839 | 2.4:+4490838 | None:intergenic |
| TTCCAGAGCTTCTGCTATGG+AGG | 0.570843 | 2.4:-4489261 | MS.gene85224:CDS |
| TGGATGAAGGACTGAGGGCA+AGG | 0.573967 | 2.4:-4489328 | MS.gene85224:CDS |
| TTGGAGGCAAATCAGGTGTA+GGG | 0.575681 | 2.4:+4489987 | None:intergenic |
| TGCTGAGTATTGTTCTGAAG+TGG | 0.577108 | 2.4:-4489918 | MS.gene85224:CDS |
| ATGGAGATGGAGACAGATGA+AGG | 0.579020 | 2.4:-4491036 | MS.gene85224:CDS |
| AGATGTATGCTTTGTTGGAG+AGG | 0.584633 | 2.4:-4489451 | MS.gene85224:CDS |
| TCCAGCAAGCTCTTGAAATG+TGG | 0.585480 | 2.4:+4490600 | None:intergenic |
| GCTAAGTTCAAAACTAAAGG+TGG | 0.585659 | 2.4:-4490205 | MS.gene85224:CDS |
| GAGGGTTGAAATAGGTTAGA+GGG | 0.586233 | 2.4:+4490857 | None:intergenic |
| AGCTCCATGTGAATGTCCCA+CGG | 0.591825 | 2.4:+4489806 | None:intergenic |
| CAGCAGCATGAATTGAGTCT+CGG | 0.594161 | 2.4:-4490400 | MS.gene85224:CDS |
| ATGCTGTAAAGGAACCAGTC+CGG | 0.595195 | 2.4:+4490131 | None:intergenic |
| GCTATCTCGACTGCAAGCGT+TGG | 0.599582 | 2.4:+4490565 | None:intergenic |
| GGAGCACACATCATTGTTGG+AGG | 0.602292 | 2.4:+4489971 | None:intergenic |
| TGCTGCCTTAGTGGTTTGGG+AGG | 0.608733 | 2.4:+4489944 | None:intergenic |
| CATGAATTGAGTCTCGGAGA+TGG | 0.610889 | 2.4:-4490394 | MS.gene85224:CDS |
| TCGCTGCTCTACAAACTCAT+GGG | 0.610983 | 2.4:-4489739 | MS.gene85224:CDS |
| CTAAAGGTGGTTCTCAGATG+AGG | 0.614681 | 2.4:-4490192 | MS.gene85224:CDS |
| TTGTTGGAGAGGATAAGTCC+CGG | 0.623233 | 2.4:-4489440 | MS.gene85224:CDS |
| TAAGGCAGCTTATCCAGATG+TGG | 0.624770 | 2.4:-4489303 | MS.gene85224:CDS |
| AATGGCCATTGATTCTGTGA+CGG | 0.626987 | 2.4:+4489199 | None:intergenic |
| TTGGGGATATAAATGTGTTG+AGG | 0.628466 | 2.4:-4489657 | MS.gene85224:CDS |
| GTTGGTGGATGAAGGACTGA+GGG | 0.628969 | 2.4:-4489333 | MS.gene85224:CDS |
| TCCACCGTGGGACATTCACA+TGG | 0.629581 | 2.4:-4489810 | MS.gene85224:CDS |
| TCCATAGCAGAAGCTCTGGA+AGG | 0.630308 | 2.4:+4489263 | None:intergenic |
| GGCAGCTTATCCAGATGTGG+AGG | 0.633458 | 2.4:-4489300 | MS.gene85224:CDS |
| ATATCACAGTTGATCCATTG+TGG | 0.637153 | 2.4:+4489884 | None:intergenic |
| GGAGCTGCCTTATGGAACAA+TGG | 0.639552 | 2.4:-4489789 | MS.gene85224:CDS |
| GAGCTTGCTGGAGATTCAGG+AGG | 0.643407 | 2.4:-4490589 | MS.gene85224:CDS |
| TGGAACTAGGCGAACCACAA+TGG | 0.651967 | 2.4:-4489898 | MS.gene85224:CDS |
| CAAAAGAAGATTGTCGACGC+CGG | 0.652896 | 2.4:-4490150 | MS.gene85224:CDS |
| CGAGAATGCTTAGAACGTTG+GGG | 0.654390 | 2.4:-4489674 | MS.gene85224:CDS |
| TCTCTTGGTAATCAATTGAG+TGG | 0.668916 | 2.4:-4489362 | MS.gene85224:CDS |
| AATAATGGCTGATCCACCGT+GGG | 0.670381 | 2.4:-4489822 | MS.gene85224:CDS |
| AAGTCCCGGAACAAGAAAGG+TGG | 0.671413 | 2.4:-4489426 | MS.gene85224:CDS |
| AGCTTGCTGGAGATTCAGGA+GGG | 0.676077 | 2.4:-4490588 | MS.gene85224:CDS |
| GCATGCACAATACTCATGCA+GGG | 0.676682 | 2.4:-4489391 | MS.gene85224:CDS |
| TCAGACTCCAAGTATAAGGG+AGG | 0.680031 | 2.4:-4490239 | MS.gene85224:CDS |
| GGTTGGTGGATGAAGGACTG+AGG | 0.683091 | 2.4:-4489334 | MS.gene85224:CDS |
| CCATTGGCTCAATCACAGCA+AGG | 0.689265 | 2.4:-4489576 | MS.gene85224:CDS |
| TAATAATGGCTGATCCACCG+TGG | 0.701095 | 2.4:-4489823 | MS.gene85224:CDS |
| TGCACAATACTCATGCAGGG+TGG | 0.701355 | 2.4:-4489388 | MS.gene85224:CDS |
| GCTGCCTTATGGAACAATGG+CGG | 0.761678 | 2.4:-4489786 | MS.gene85224:CDS |
| TCCATGTGAATGTCCCACGG+TGG | 0.777302 | 2.4:+4489809 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAATAAGAAATCATTTA+GGG | - | chr2.4:4489912-4489931 | MS.gene85224:CDS | 10.0% |
| !! | TAATTAATAAGAAATCATTT+AGG | - | chr2.4:4489911-4489930 | MS.gene85224:CDS | 10.0% |
| !!! | TTATTATTATAAGGTTTTTG+AGG | + | chr2.4:4489415-4489434 | None:intergenic | 15.0% |
| !!! | TTCGAGTTTTTATTATTATA+AGG | + | chr2.4:4489424-4489443 | None:intergenic | 15.0% |
| !! | ATGGTAATATGAATCAAAAT+CGG | - | chr2.4:4489842-4489861 | MS.gene85224:CDS | 20.0% |
| !!! | TCATGGTTTTGAATATAAAT+AGG | - | chr2.4:4489746-4489765 | MS.gene85224:CDS | 20.0% |
| ! | ATGTAAATATGTTCACTATG+AGG | - | chr2.4:4490203-4490222 | MS.gene85224:CDS | 25.0% |
| !! | TGATATTCGTAACTTTAGAA+TGG | - | chr2.4:4490350-4490369 | MS.gene85224:CDS | 25.0% |
| !!! | AACTTTAGAATGGACATATT+AGG | - | chr2.4:4490360-4490379 | MS.gene85224:CDS | 25.0% |
| AAGCTTATTACATGCTGTAA+AGG | + | chr2.4:4490100-4490119 | None:intergenic | 30.0% | |
| ATCCTCCAAATTCATACTAT+CGG | + | chr2.4:4489881-4489900 | None:intergenic | 30.0% | |
| ATGGACATATTAGGTAAGTT+TGG | - | chr2.4:4490369-4490388 | MS.gene85224:CDS | 30.0% | |
| GAAGAATCAATTTCCACAAA+AGG | + | chr2.4:4489544-4489563 | None:intergenic | 30.0% | |
| TATTCAGACTCCAAGTATAA+GGG | - | chr2.4:4489975-4489994 | MS.gene85224:CDS | 30.0% | |
| TCGAGAGAAGAAACAAAATT+AGG | + | chr2.4:4489286-4489305 | None:intergenic | 30.0% | |
| TCTTCATACTGACATTAGTT+TGG | - | chr2.4:4490140-4490159 | MS.gene85224:CDS | 30.0% | |
| TTATTCAGACTCCAAGTATA+AGG | - | chr2.4:4489974-4489993 | MS.gene85224:CDS | 30.0% | |
| TTCCACTTTATCTAGGAAAT+TGG | - | chr2.4:4489561-4489580 | MS.gene85224:CDS | 30.0% | |
| TTGATTCTTCCACTTTATCT+AGG | - | chr2.4:4489554-4489573 | MS.gene85224:CDS | 30.0% | |
| ! | AGGTAAGTTTGGAGTAATAA+TGG | - | chr2.4:4490380-4490399 | MS.gene85224:CDS | 30.0% |
| ! | CTTCATACTGACATTAGTTT+GGG | - | chr2.4:4490141-4490160 | MS.gene85224:CDS | 30.0% |
| ! | TCAATGTTTCTGTTTACTTC+AGG | + | chr2.4:4490696-4490715 | None:intergenic | 30.0% |
| ! | TTTGTTGGTAAGTCACAATA+TGG | + | chr2.4:4490051-4490070 | None:intergenic | 30.0% |
| !! | ATGTTATTGTTTCTGAAGTC+CGG | - | chr2.4:4490721-4490740 | MS.gene85224:CDS | 30.0% |
| !! | TCATGGGCTTATTTTTCTAT+GGG | - | chr2.4:4490494-4490513 | MS.gene85224:CDS | 30.0% |
| !! | TTATTTTTCTATGGGTCACT+GGG | - | chr2.4:4490502-4490521 | MS.gene85224:CDS | 30.0% |
| AACAAAGCATACATCTCATC+TGG | + | chr2.4:4490762-4490781 | None:intergenic | 35.0% | |
| AACCGATAGTATGAATTTGG+AGG | - | chr2.4:4489876-4489895 | MS.gene85224:CDS | 35.0% | |
| AAGTGGCAAATCAAGAATCA+TGG | - | chr2.4:4489729-4489748 | MS.gene85224:CDS | 35.0% | |
| AATGTGTTGAGGAGATCATT+TGG | - | chr2.4:4490571-4490590 | MS.gene85224:CDS | 35.0% | |
| AGAGAAAGTTAGTCCTTTGT+CGG | - | chr2.4:4489477-4489496 | MS.gene85224:CDS | 35.0% | |
| AGATGAGATGTATGCTTTGT+TGG | - | chr2.4:4490761-4490780 | MS.gene85224:CDS | 35.0% | |
| ATAATTAGAACTGGACGTAC+AGG | - | chr2.4:4490618-4490637 | MS.gene85224:CDS | 35.0% | |
| ATATCACAGTTGATCCATTG+TGG | + | chr2.4:4490336-4490355 | None:intergenic | 35.0% | |
| ATGTGTTGAGGAGATCATTT+GGG | - | chr2.4:4490572-4490591 | MS.gene85224:CDS | 35.0% | |
| CTCCAATTTCCTAGATAAAG+TGG | + | chr2.4:4489566-4489585 | None:intergenic | 35.0% | |
| CTTCAGCGAATAATTAGAAC+TGG | - | chr2.4:4490609-4490628 | MS.gene85224:CDS | 35.0% | |
| GCAAAAATACGAAACTGCTA+AGG | - | chr2.4:4489939-4489958 | MS.gene85224:CDS | 35.0% | |
| GCTAAGTTCAAAACTAAAGG+TGG | - | chr2.4:4490012-4490031 | MS.gene85224:CDS | 35.0% | |
| GCTGCTAAGTTCAAAACTAA+AGG | - | chr2.4:4490009-4490028 | MS.gene85224:CDS | 35.0% | |
| GTAATCAATTGAGTGGTGTA+AGG | - | chr2.4:4490862-4490881 | MS.gene85224:CDS | 35.0% | |
| TGCAACCGATAGTATGAATT+TGG | - | chr2.4:4489873-4489892 | MS.gene85224:CDS | 35.0% | |
| TGGAGAGATGATTTCGATTT+GGG | + | chr2.4:4489385-4489404 | None:intergenic | 35.0% | |
| TTAGTTAGTGTCCACATCAA+TGG | + | chr2.4:4491039-4491058 | None:intergenic | 35.0% | |
| TTGGAGAGATGATTTCGATT+TGG | + | chr2.4:4489386-4489405 | None:intergenic | 35.0% | |
| TTGGGGATATAAATGTGTTG+AGG | - | chr2.4:4490560-4490579 | MS.gene85224:CDS | 35.0% | |
| ! | AAGAGAGAACTTTGAGAGAA+AGG | + | chr2.4:4489309-4489328 | None:intergenic | 35.0% |
| ! | ACATTGTCTTGTTGGGATAA+AGG | - | chr2.4:4490665-4490684 | MS.gene85224:CDS | 35.0% |
| ! | CATTGTCTTGTTGGGATAAA+GGG | - | chr2.4:4490666-4490685 | MS.gene85224:CDS | 35.0% |
| ! | GTTCATATGTGACTTGTGTT+GGG | + | chr2.4:4489236-4489255 | None:intergenic | 35.0% |
| ! | TCTCTTGGTAATCAATTGAG+TGG | - | chr2.4:4490855-4490874 | MS.gene85224:CDS | 35.0% |
| ! | TGTTCATATGTGACTTGTGT+TGG | + | chr2.4:4489237-4489256 | None:intergenic | 35.0% |
| ! | TTTAAGTCGACTACCTTTTG+TGG | - | chr2.4:4489528-4489547 | MS.gene85224:CDS | 35.0% |
| !! | CTCATGGGCTTATTTTTCTA+TGG | - | chr2.4:4490493-4490512 | MS.gene85224:CDS | 35.0% |
| !! | CTTATTTTTCTATGGGTCAC+TGG | - | chr2.4:4490501-4490520 | MS.gene85224:CDS | 35.0% |
| !! | TATTGTTCTGAAGTGGAACT+AGG | - | chr2.4:4490306-4490325 | MS.gene85224:CDS | 35.0% |
| !! | TGTTATTGTTTCTGAAGTCC+GGG | - | chr2.4:4490722-4490741 | MS.gene85224:CDS | 35.0% |
| !!! | AAGGTTTTTGAGGTAGTTGT+TGG | + | chr2.4:4489405-4489424 | None:intergenic | 35.0% |
| ACGAGAATGCTTAGAACGTT+GGG | - | chr2.4:4490542-4490561 | MS.gene85224:CDS | 40.0% | |
| AGAATCAATGGCCATTGATG+TGG | - | chr2.4:4491025-4491044 | MS.gene85224:CDS | 40.0% | |
| AGCAAGGAACATTGTCTTGT+TGG | - | chr2.4:4490657-4490676 | MS.gene85224:CDS | 40.0% | |
| AGGCAATTCTCTCAATAGAC+GGG | + | chr2.4:4489773-4489792 | None:intergenic | 40.0% | |
| AGGGTTGAAATAGGTTAGAG+GGG | + | chr2.4:4489362-4489381 | None:intergenic | 40.0% | |
| AGGTCAATGGCAGATGATAA+TGG | - | chr2.4:4489679-4489698 | MS.gene85224:CDS | 40.0% | |
| ATCATTGTTGGAGGCAAATC+AGG | + | chr2.4:4490240-4490259 | None:intergenic | 40.0% | |
| ATTTGCCGTCACAGAATCAA+TGG | - | chr2.4:4491013-4491032 | MS.gene85224:CDS | 40.0% | |
| CAGGCAATTCTCTCAATAGA+CGG | + | chr2.4:4489774-4489793 | None:intergenic | 40.0% | |
| GAGGGTTGAAATAGGTTAGA+GGG | + | chr2.4:4489363-4489382 | None:intergenic | 40.0% | |
| GGACTAACTTTCTCTGATAC+TGG | + | chr2.4:4489472-4489491 | None:intergenic | 40.0% | |
| TCAATTGAGTGGTGTAAGGT+TGG | - | chr2.4:4490866-4490885 | MS.gene85224:CDS | 40.0% | |
| ! | AGATGTATGCTTTGTTGGAG+AGG | - | chr2.4:4490766-4490785 | MS.gene85224:CDS | 40.0% |
| ! | AGTTGATGTTGTGCAGTTTC+AGG | + | chr2.4:4489793-4489812 | None:intergenic | 40.0% |
| ! | ATTGATTCTGTGACGGCAAA+TGG | + | chr2.4:4491014-4491033 | None:intergenic | 40.0% |
| ! | CGTCGACAATCTTCTTTTGT+TGG | + | chr2.4:4490066-4490085 | None:intergenic | 40.0% |
| ! | GCAAGGAACATTGTCTTGTT+GGG | - | chr2.4:4490658-4490677 | MS.gene85224:CDS | 40.0% |
| !! | AATGGCCATTGATTCTGTGA+CGG | + | chr2.4:4491021-4491040 | None:intergenic | 40.0% |
| !! | AGAGATGATTTCGATTTGGG+AGG | + | chr2.4:4489382-4489401 | None:intergenic | 40.0% |
| !! | GAGATGATTTCGATTTGGGA+GGG | + | chr2.4:4489381-4489400 | None:intergenic | 40.0% |
| !! | TGAAATGTGGCTTTGTCTTG+TGG | + | chr2.4:4489607-4489626 | None:intergenic | 40.0% |
| !! | TGATAATGGTGCTGTCGAAT+TGG | - | chr2.4:4489693-4489712 | MS.gene85224:CDS | 40.0% |
| !! | TGCTGAGTATTGTTCTGAAG+TGG | - | chr2.4:4490299-4490318 | MS.gene85224:CDS | 40.0% |
| !! | TTGGAAGAGTTTGCTGTAAG+TGG | - | chr2.4:4489712-4489731 | MS.gene85224:CDS | 40.0% |
| AACTCCACCTTTCTTGTTCC+GGG | + | chr2.4:4490798-4490817 | None:intergenic | 45.0% | |
| AATAATGGCTGATCCACCGT+GGG | - | chr2.4:4490395-4490414 | MS.gene85224:CDS | 45.0% | |
| ATCGATCGAACAACCGACAA+AGG | + | chr2.4:4489493-4489512 | None:intergenic | 45.0% | |
| ATGCTGTAAAGGAACCAGTC+CGG | + | chr2.4:4490089-4490108 | None:intergenic | 45.0% | |
| ATGGAGATGGAGACAGATGA+AGG | - | chr2.4:4489181-4489200 | MS.gene85224:CDS | 45.0% | |
| ATTCACATGGAGCTGCCTTA+TGG | - | chr2.4:4490420-4490439 | MS.gene85224:CDS | 45.0% | |
| ATTGAGTGGTGTAAGGTTGG+TGG | - | chr2.4:4490869-4490888 | MS.gene85224:CDS | 45.0% | |
| CAAAAGAAGATTGTCGACGC+CGG | - | chr2.4:4490067-4490086 | MS.gene85224:CDS | 45.0% | |
| CAACTCCACCTTTCTTGTTC+CGG | + | chr2.4:4490799-4490818 | None:intergenic | 45.0% | |
| CAGCAGCATGAATTGAGTCT+CGG | - | chr2.4:4489817-4489836 | MS.gene85224:CDS | 45.0% | |
| CATGAATTGAGTCTCGGAGA+TGG | - | chr2.4:4489823-4489842 | MS.gene85224:CDS | 45.0% | |
| CGAGAATGCTTAGAACGTTG+GGG | - | chr2.4:4490543-4490562 | MS.gene85224:CDS | 45.0% | |
| CTAAAGGTGGTTCTCAGATG+AGG | - | chr2.4:4490025-4490044 | MS.gene85224:CDS | 45.0% | |
| GACGAGAATGCTTAGAACGT+TGG | - | chr2.4:4490541-4490560 | MS.gene85224:CDS | 45.0% | |
| GATAAGTCCCGGAACAAGAA+AGG | - | chr2.4:4490788-4490807 | MS.gene85224:CDS | 45.0% | |
| GCATGCACAATACTCATGCA+GGG | - | chr2.4:4490826-4490845 | MS.gene85224:CDS | 45.0% | |
| GGAGGGTTGAAATAGGTTAG+AGG | + | chr2.4:4489364-4489383 | None:intergenic | 45.0% | |
| GGGTTGAAATAGGTTAGAGG+GGG | + | chr2.4:4489361-4489380 | None:intergenic | 45.0% | |
| GTGTAGGAGAAAAAGGACGA+TGG | + | chr2.4:4489339-4489358 | None:intergenic | 45.0% | |
| TAAGGCAGCTTATCCAGATG+TGG | - | chr2.4:4490914-4490933 | MS.gene85224:CDS | 45.0% | |
| TAATAATGGCTGATCCACCG+TGG | - | chr2.4:4490394-4490413 | MS.gene85224:CDS | 45.0% | |
| TCAGACTCCAAGTATAAGGG+AGG | - | chr2.4:4489978-4489997 | MS.gene85224:CDS | 45.0% | |
| TCATCCGCCATTGTTCCATA+AGG | + | chr2.4:4490438-4490457 | None:intergenic | 45.0% | |
| TCCAGCAAGCTCTTGAAATG+TGG | + | chr2.4:4489620-4489639 | None:intergenic | 45.0% | |
| TCGCTGCTCTACAAACTCAT+GGG | - | chr2.4:4490478-4490497 | MS.gene85224:CDS | 45.0% | |
| TTGGAGGCAAATCAGGTGTA+GGG | + | chr2.4:4490233-4490252 | None:intergenic | 45.0% | |
| TTGTTGGAGAGGATAAGTCC+CGG | - | chr2.4:4490777-4490796 | MS.gene85224:CDS | 45.0% | |
| ! | AAATAGGTTAGAGGGGGTGT+AGG | + | chr2.4:4489355-4489374 | None:intergenic | 45.0% |
| ! | CGATTTGGGAGGGTTGAAAT+AGG | + | chr2.4:4489371-4489390 | None:intergenic | 45.0% |
| ! | CTAGTGTTGCTGCTCAAACA+AGG | - | chr2.4:4490985-4491004 | MS.gene85224:CDS | 45.0% |
| ! | GGCTTTGTCTTGTGGTGTAA+AGG | + | chr2.4:4489599-4489618 | None:intergenic | 45.0% |
| ! | GTCCTTTTCTCCGTACTTGT+CGG | - | chr2.4:4490169-4490188 | MS.gene85224:CDS | 45.0% |
| ! | TGTTCATGTGCCGACAAGTA+CGG | + | chr2.4:4490182-4490201 | None:intergenic | 45.0% |
| ! | TTGCAGTCGAGATAGCTTTG+AGG | - | chr2.4:4489659-4489678 | MS.gene85224:CDS | 45.0% |
| ! | TTTGTCGGTTGTTCGATCGA+TGG | - | chr2.4:4489492-4489511 | MS.gene85224:CDS | 45.0% |
| !! | CGAGATAGCTTTGAGGTCAA+TGG | - | chr2.4:4489666-4489685 | MS.gene85224:CDS | 45.0% |
| AAGTCCCGGAACAAGAAAGG+TGG | - | chr2.4:4490791-4490810 | MS.gene85224:CDS | 50.0% | |
| ACAGCAGCCTCCCTTATACT+TGG | + | chr2.4:4489988-4490007 | None:intergenic | 50.0% | |
| ACCTTCCAGAGCTTCTGCTA+TGG | - | chr2.4:4490953-4490972 | MS.gene85224:CDS | 50.0% | |
| AGCTCCATGTGAATGTCCCA+CGG | + | chr2.4:4490414-4490433 | None:intergenic | 50.0% | |
| AGGACTGAGGGCAAGGTTTA+AGG | - | chr2.4:4490896-4490915 | MS.gene85224:CDS | 50.0% | |
| CGCATGCACAATACTCATGC+AGG | - | chr2.4:4490825-4490844 | MS.gene85224:CDS | 50.0% | |
| GCCACATTTCAAGAGCTTGC+TGG | - | chr2.4:4489616-4489635 | MS.gene85224:CDS | 50.0% | |
| GCTGCCTTATGGAACAATGG+CGG | - | chr2.4:4490431-4490450 | MS.gene85224:CDS | 50.0% | |
| GGAGCACACATCATTGTTGG+AGG | + | chr2.4:4490249-4490268 | None:intergenic | 50.0% | |
| GGAGCTGCCTTATGGAACAA+TGG | - | chr2.4:4490428-4490447 | MS.gene85224:CDS | 50.0% | |
| GTCGCTGCTCTACAAACTCA+TGG | - | chr2.4:4490477-4490496 | MS.gene85224:CDS | 50.0% | |
| GTTGGAGGCAAATCAGGTGT+AGG | + | chr2.4:4490234-4490253 | None:intergenic | 50.0% | |
| TACCTCCATAGCAGAAGCTC+TGG | + | chr2.4:4490961-4490980 | None:intergenic | 50.0% | |
| TGCACAATACTCATGCAGGG+TGG | - | chr2.4:4490829-4490848 | MS.gene85224:CDS | 50.0% | |
| TGCCGACAAGTACGGAGAAA+AGG | + | chr2.4:4490174-4490193 | None:intergenic | 50.0% | |
| TGGAACTAGGCGAACCACAA+TGG | - | chr2.4:4490319-4490338 | MS.gene85224:CDS | 50.0% | |
| TTCCAGAGCTTCTGCTATGG+AGG | - | chr2.4:4490956-4490975 | MS.gene85224:CDS | 50.0% | |
| ! | AGAGGGGGTGTAGGAGAAAA+AGG | + | chr2.4:4489346-4489365 | None:intergenic | 50.0% |
| ! | CCTTGCTGTGATTGAGCCAA+TGG | + | chr2.4:4490644-4490663 | None:intergenic | 50.0% |
| ! | CTGGCTTTCTGCTTGTTTCC+CGG | + | chr2.4:4490743-4490762 | None:intergenic | 50.0% |
| ! | GGAGGAGCACACATCATTGT+TGG | + | chr2.4:4490252-4490271 | None:intergenic | 50.0% |
| ! | GTTGGTGGATGAAGGACTGA+GGG | - | chr2.4:4490884-4490903 | MS.gene85224:CDS | 50.0% |
| !! | AGCTTGCTGGAGATTCAGGA+GGG | - | chr2.4:4489629-4489648 | MS.gene85224:CDS | 50.0% |
| !! | CAAGAGCTTGCTGGAGATTC+AGG | - | chr2.4:4489625-4489644 | MS.gene85224:CDS | 50.0% |
| !! | CCATTGGCTCAATCACAGCA+AGG | - | chr2.4:4490641-4490660 | MS.gene85224:CDS | 50.0% |
| !! | GGTGTAAGGTTGGTGGATGA+AGG | - | chr2.4:4490876-4490895 | MS.gene85224:CDS | 50.0% |
| !! | TCCATAGCAGAAGCTCTGGA+AGG | + | chr2.4:4490957-4490976 | None:intergenic | 50.0% |
| ACGCTGCTGCCTTAGTGGTT+TGG | + | chr2.4:4490280-4490299 | None:intergenic | 55.0% | |
| CATGCAGGGTGGATGTCTCT+TGG | - | chr2.4:4490840-4490859 | MS.gene85224:CDS | 55.0% | |
| CGCTGCTGCCTTAGTGGTTT+GGG | + | chr2.4:4490279-4490298 | None:intergenic | 55.0% | |
| CTCCTCCTCCCAAACCACTA+AGG | - | chr2.4:4490268-4490287 | MS.gene85224:CDS | 55.0% | |
| GAACTGGACGTACAGGCCAT+TGG | - | chr2.4:4490625-4490644 | MS.gene85224:CDS | 55.0% | |
| GCTATCTCGACTGCAAGCGT+TGG | + | chr2.4:4489655-4489674 | None:intergenic | 55.0% | |
| GGCAGCTTATCCAGATGTGG+AGG | - | chr2.4:4490917-4490936 | MS.gene85224:CDS | 55.0% | |
| TCCACCGTGGGACATTCACA+TGG | - | chr2.4:4490407-4490426 | MS.gene85224:CDS | 55.0% | |
| TCCATGTGAATGTCCCACGG+TGG | + | chr2.4:4490411-4490430 | None:intergenic | 55.0% | |
| TGGATGAAGGACTGAGGGCA+AGG | - | chr2.4:4490889-4490908 | MS.gene85224:CDS | 55.0% | |
| ! | CTTAGTGGTTTGGGAGGAGG+AGG | + | chr2.4:4490270-4490289 | None:intergenic | 55.0% |
| ! | TGCCTTAGTGGTTTGGGAGG+AGG | + | chr2.4:4490273-4490292 | None:intergenic | 55.0% |
| ! | TGCTGCCTTAGTGGTTTGGG+AGG | + | chr2.4:4490276-4490295 | None:intergenic | 55.0% |
| !! | GAAGCTCTGGAAGGTGATGC+TGG | + | chr2.4:4490948-4490967 | None:intergenic | 55.0% |
| !! | GAGCTTGCTGGAGATTCAGG+AGG | - | chr2.4:4489628-4489647 | MS.gene85224:CDS | 55.0% |
| !! | GGTTGGTGGATGAAGGACTG+AGG | - | chr2.4:4490883-4490902 | MS.gene85224:CDS | 55.0% |
| ACTGGGCGTGCGATGGAACT+TGG | - | chr2.4:4490519-4490538 | MS.gene85224:CDS | 60.0% | |
| GAAGATTGTCGACGCCGGAC+TGG | - | chr2.4:4490072-4490091 | MS.gene85224:CDS | 60.0% | |
| TCAGCACGCTGCTGCCTTAG+TGG | + | chr2.4:4490285-4490304 | None:intergenic | 60.0% | |
| ATGGGTCACTGGGCGTGCGA+TGG | - | chr2.4:4490512-4490531 | MS.gene85224:CDS | 65.0% | |
| GCTGGCTGCACCTCCACATC+TGG | + | chr2.4:4490930-4490949 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 4489181 | 4491058 | 4489181 | ID=MS.gene85224 |
| chr2.4 | mRNA | 4489181 | 4491058 | 4489181 | ID=MS.gene85224.t1;Parent=MS.gene85224 |
| chr2.4 | exon | 4489181 | 4491058 | 4489181 | ID=MS.gene85224.t1.exon1;Parent=MS.gene85224.t1 |
| chr2.4 | CDS | 4489181 | 4491058 | 4489181 | ID=cds.MS.gene85224.t1;Parent=MS.gene85224.t1 |
| Gene Sequence |
| Protein sequence |
