Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85231.t1 | XP_012570242.1 | 81.7 | 667 | 89 | 6 | 30 | 665 | 1 | 665 | 0.00E+00 | 1085.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85231.t1 | Q9FN02 | 46.6 | 399 | 168 | 8 | 221 | 574 | 9 | 407 | 9.9e-92 | 339.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85231.t1 | A0A1S3E380 | 81.7 | 667 | 89 | 6 | 30 | 665 | 1 | 665 | 0.0e+00 | 1085.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene85231 | MS.gene057555 | PPI |
MS.gene85231 | MS.gene97609 | PPI |
MS.gene021787 | MS.gene85231 | PPI |
MS.gene85231 | MS.gene45219 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85231.t1 | MTR_2g099710 | 79.935 | 618 | 64 | 6 | 51 | 645 | 1 | 581 | 0.0 | 985 |
MS.gene85231.t1 | MTR_8g072600 | 43.000 | 400 | 175 | 9 | 223 | 571 | 59 | 456 | 4.97e-101 | 317 |
MS.gene85231.t1 | MTR_8g072600 | 43.643 | 291 | 128 | 5 | 223 | 479 | 59 | 347 | 6.73e-73 | 240 |
MS.gene85231.t1 | MTR_3g452710 | 33.333 | 339 | 181 | 14 | 227 | 556 | 168 | 470 | 2.92e-39 | 152 |
MS.gene85231.t1 | MTR_3g452710 | 33.333 | 339 | 181 | 14 | 227 | 556 | 235 | 537 | 7.76e-39 | 152 |
MS.gene85231.t1 | MTR_2g100130 | 33.766 | 308 | 159 | 13 | 263 | 556 | 113 | 389 | 9.48e-37 | 142 |
MS.gene85231.t1 | MTR_2g100130 | 33.766 | 308 | 159 | 13 | 263 | 556 | 183 | 459 | 2.64e-36 | 143 |
MS.gene85231.t1 | MTR_2g100130 | 33.766 | 308 | 159 | 13 | 263 | 556 | 212 | 488 | 3.72e-36 | 143 |
MS.gene85231.t1 | MTR_2g100130 | 33.766 | 308 | 159 | 13 | 263 | 556 | 222 | 498 | 4.30e-36 | 143 |
MS.gene85231.t1 | MTR_2g100130 | 33.887 | 301 | 153 | 13 | 263 | 549 | 183 | 451 | 4.61e-35 | 139 |
MS.gene85231.t1 | MTR_2g100130 | 34.483 | 290 | 145 | 12 | 263 | 538 | 222 | 480 | 6.93e-35 | 139 |
MS.gene85231.t1 | MTR_2g100130 | 34.138 | 290 | 147 | 12 | 263 | 538 | 222 | 481 | 9.64e-35 | 139 |
MS.gene85231.t1 | MTR_2g100160 | 32.845 | 341 | 183 | 15 | 226 | 556 | 104 | 408 | 1.21e-34 | 137 |
MS.gene85231.t1 | MTR_2g100130 | 35.075 | 268 | 134 | 11 | 263 | 516 | 222 | 463 | 4.33e-33 | 134 |
MS.gene85231.t1 | MTR_8g085610 | 32.143 | 308 | 167 | 12 | 253 | 551 | 19 | 293 | 1.50e-28 | 117 |
MS.gene85231.t1 | MTR_8g085610 | 32.660 | 297 | 158 | 12 | 264 | 551 | 6 | 269 | 1.82e-28 | 115 |
MS.gene85231.t1 | MTR_8g098980 | 28.182 | 330 | 188 | 12 | 234 | 551 | 6 | 298 | 2.51e-28 | 116 |
MS.gene85231.t1 | MTR_8g005010 | 31.884 | 276 | 146 | 11 | 264 | 529 | 32 | 275 | 2.51e-28 | 115 |
MS.gene85231.t1 | MTR_1g079950 | 28.406 | 345 | 191 | 13 | 261 | 592 | 31 | 332 | 3.83e-28 | 116 |
MS.gene85231.t1 | MTR_8g062430 | 32.468 | 308 | 166 | 12 | 253 | 551 | 17 | 291 | 6.60e-28 | 115 |
MS.gene85231.t1 | MTR_7g107310 | 31.494 | 308 | 169 | 12 | 253 | 551 | 24 | 298 | 1.27e-27 | 114 |
MS.gene85231.t1 | MTR_1g079950 | 28.947 | 304 | 166 | 11 | 261 | 551 | 31 | 297 | 2.95e-27 | 113 |
MS.gene85231.t1 | MTR_1g079950 | 28.947 | 304 | 166 | 11 | 261 | 551 | 31 | 297 | 4.03e-27 | 113 |
MS.gene85231.t1 | MTR_1g043240 | 29.560 | 318 | 160 | 11 | 261 | 549 | 31 | 313 | 5.89e-27 | 112 |
MS.gene85231.t1 | MTR_1g079950 | 28.889 | 315 | 171 | 12 | 261 | 562 | 60 | 334 | 6.41e-27 | 113 |
MS.gene85231.t1 | MTR_7g116380 | 30.132 | 302 | 165 | 12 | 261 | 551 | 31 | 297 | 9.17e-27 | 112 |
MS.gene85231.t1 | MTR_5g037200 | 32.667 | 300 | 160 | 12 | 261 | 551 | 25 | 291 | 9.69e-27 | 111 |
MS.gene85231.t1 | MTR_7g116380 | 30.132 | 302 | 165 | 12 | 261 | 551 | 31 | 297 | 1.04e-26 | 112 |
MS.gene85231.t1 | MTR_5g081230 | 30.233 | 301 | 166 | 12 | 261 | 551 | 48 | 314 | 2.82e-26 | 110 |
MS.gene85231.t1 | MTR_1g074880 | 29.104 | 268 | 148 | 9 | 261 | 516 | 31 | 268 | 4.37e-26 | 110 |
MS.gene85231.t1 | MTR_1g074880 | 29.104 | 268 | 148 | 9 | 261 | 516 | 31 | 268 | 5.31e-26 | 109 |
MS.gene85231.t1 | MTR_1g039380 | 33.712 | 264 | 136 | 11 | 264 | 516 | 24 | 259 | 3.13e-25 | 107 |
MS.gene85231.t1 | MTR_1g039380 | 34.855 | 241 | 123 | 10 | 287 | 516 | 18 | 235 | 5.18e-25 | 105 |
MS.gene85231.t1 | MTR_1g079950 | 28.931 | 318 | 175 | 12 | 288 | 592 | 27 | 306 | 6.51e-25 | 106 |
MS.gene85231.t1 | MTR_1g074880 | 31.092 | 238 | 127 | 8 | 291 | 516 | 1 | 213 | 8.68e-25 | 104 |
MS.gene85231.t1 | MTR_7g112870 | 27.653 | 311 | 172 | 11 | 261 | 553 | 33 | 308 | 8.88e-25 | 106 |
MS.gene85231.t1 | MTR_1g074880 | 31.092 | 238 | 127 | 8 | 291 | 516 | 1 | 213 | 1.45e-24 | 104 |
MS.gene85231.t1 | MTR_1g089370 | 29.568 | 301 | 166 | 8 | 237 | 516 | 529 | 804 | 6.40e-24 | 108 |
MS.gene85231.t1 | MTR_5g037200 | 40.397 | 151 | 72 | 5 | 261 | 402 | 25 | 166 | 4.17e-22 | 95.9 |
MS.gene85231.t1 | MTR_5g093990 | 29.930 | 284 | 153 | 11 | 280 | 549 | 36 | 287 | 9.34e-22 | 97.1 |
MS.gene85231.t1 | MTR_2g087530 | 28.070 | 342 | 187 | 12 | 237 | 550 | 532 | 842 | 3.87e-21 | 99.4 |
MS.gene85231.t1 | MTR_2g087530 | 28.863 | 343 | 183 | 14 | 237 | 550 | 645 | 955 | 3.99e-21 | 99.4 |
MS.gene85231.t1 | MTR_4g050540 | 28.875 | 329 | 178 | 13 | 237 | 541 | 650 | 946 | 2.71e-19 | 93.6 |
MS.gene85231.t1 | MTR_7g066570 | 63.235 | 68 | 25 | 0 | 578 | 645 | 483 | 550 | 2.20e-17 | 86.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85231.t1 | AT5G63870 | 46.500 | 400 | 169 | 8 | 221 | 575 | 9 | 408 | 2.47e-108 | 335 |
MS.gene85231.t1 | AT5G63870 | 46.500 | 400 | 169 | 8 | 221 | 575 | 9 | 408 | 2.47e-108 | 335 |
MS.gene85231.t1 | AT5G10900 | 34.069 | 634 | 320 | 14 | 59 | 665 | 37 | 599 | 1.53e-102 | 326 |
MS.gene85231.t1 | AT5G10900 | 39.829 | 467 | 233 | 10 | 223 | 665 | 157 | 599 | 6.66e-101 | 323 |
MS.gene85231.t1 | AT5G10900 | 39.446 | 469 | 217 | 10 | 223 | 665 | 157 | 584 | 1.47e-98 | 316 |
MS.gene85231.t1 | AT1G48120 | 43.577 | 397 | 162 | 10 | 210 | 552 | 576 | 964 | 1.91e-81 | 282 |
MS.gene85231.t1 | AT5G63870 | 46.503 | 286 | 125 | 4 | 221 | 478 | 9 | 294 | 1.62e-74 | 243 |
MS.gene85231.t1 | AT2G42810 | 34.125 | 337 | 177 | 14 | 229 | 556 | 172 | 472 | 9.23e-40 | 153 |
MS.gene85231.t1 | AT2G42810 | 34.125 | 337 | 177 | 14 | 229 | 556 | 172 | 472 | 9.23e-40 | 153 |
MS.gene85231.t1 | AT2G42810 | 34.125 | 337 | 177 | 14 | 229 | 556 | 172 | 472 | 9.23e-40 | 153 |
MS.gene85231.t1 | AT2G42810 | 34.125 | 337 | 177 | 14 | 229 | 556 | 225 | 525 | 3.13e-39 | 152 |
MS.gene85231.t1 | AT2G42810 | 34.125 | 337 | 177 | 14 | 229 | 556 | 226 | 526 | 3.15e-39 | 152 |
MS.gene85231.t1 | AT5G43380 | 32.087 | 321 | 158 | 13 | 261 | 556 | 31 | 316 | 3.80e-29 | 119 |
MS.gene85231.t1 | AT5G43380 | 32.087 | 321 | 158 | 13 | 261 | 556 | 31 | 316 | 4.60e-29 | 119 |
MS.gene85231.t1 | AT5G43380 | 32.087 | 321 | 158 | 13 | 261 | 556 | 31 | 316 | 4.90e-29 | 118 |
MS.gene85231.t1 | AT2G42500 | 31.818 | 308 | 168 | 12 | 253 | 551 | 24 | 298 | 8.27e-29 | 117 |
MS.gene85231.t1 | AT2G29400 | 30.033 | 303 | 163 | 12 | 261 | 551 | 48 | 313 | 2.89e-28 | 116 |
MS.gene85231.t1 | AT3G58500 | 31.494 | 308 | 169 | 12 | 253 | 551 | 24 | 298 | 1.03e-27 | 114 |
MS.gene85231.t1 | AT4G11240 | 28.660 | 321 | 172 | 12 | 243 | 551 | 23 | 298 | 1.55e-27 | 114 |
MS.gene85231.t1 | AT1G64040 | 30.159 | 315 | 169 | 12 | 261 | 563 | 32 | 307 | 1.82e-27 | 114 |
MS.gene85231.t1 | AT5G59160 | 31.894 | 301 | 161 | 12 | 261 | 551 | 41 | 307 | 5.15e-27 | 112 |
MS.gene85231.t1 | AT5G59160 | 31.894 | 301 | 161 | 12 | 261 | 551 | 41 | 307 | 5.15e-27 | 112 |
MS.gene85231.t1 | AT5G59160 | 31.894 | 301 | 161 | 12 | 261 | 551 | 41 | 307 | 5.15e-27 | 112 |
MS.gene85231.t1 | AT2G39840 | 30.897 | 301 | 164 | 12 | 261 | 551 | 45 | 311 | 6.41e-27 | 112 |
MS.gene85231.t1 | AT1G10430 | 32.143 | 308 | 167 | 12 | 253 | 551 | 17 | 291 | 8.81e-27 | 111 |
MS.gene85231.t1 | AT1G10430 | 32.143 | 308 | 167 | 12 | 253 | 551 | 17 | 291 | 8.81e-27 | 111 |
MS.gene85231.t1 | AT3G05580 | 29.433 | 282 | 151 | 10 | 261 | 529 | 37 | 283 | 1.08e-26 | 111 |
MS.gene85231.t1 | AT1G59830 | 32.660 | 297 | 158 | 12 | 264 | 551 | 28 | 291 | 2.17e-26 | 110 |
MS.gene85231.t1 | AT1G69960 | 30.945 | 307 | 172 | 11 | 253 | 551 | 18 | 292 | 4.90e-26 | 109 |
MS.gene85231.t1 | AT5G27840 | 29.181 | 281 | 153 | 10 | 261 | 529 | 37 | 283 | 6.44e-26 | 109 |
MS.gene85231.t1 | AT5G27840 | 29.181 | 281 | 153 | 10 | 261 | 529 | 37 | 283 | 8.19e-26 | 109 |
MS.gene85231.t1 | AT5G27840 | 29.181 | 281 | 153 | 10 | 261 | 529 | 37 | 283 | 8.19e-26 | 109 |
MS.gene85231.t1 | AT5G27840 | 29.181 | 281 | 153 | 10 | 261 | 529 | 37 | 283 | 8.46e-26 | 109 |
MS.gene85231.t1 | AT3G19980 | 33.712 | 264 | 136 | 11 | 264 | 516 | 24 | 259 | 1.97e-25 | 107 |
MS.gene85231.t1 | AT1G59830 | 36.364 | 220 | 109 | 9 | 264 | 474 | 28 | 225 | 2.74e-25 | 106 |
MS.gene85231.t1 | AT1G50370 | 33.712 | 264 | 136 | 11 | 264 | 516 | 24 | 259 | 3.31e-25 | 107 |
MS.gene85231.t1 | AT3G05580 | 30.435 | 230 | 129 | 7 | 261 | 481 | 37 | 244 | 1.43e-24 | 103 |
MS.gene85231.t1 | AT4G26720 | 30.742 | 283 | 156 | 11 | 280 | 551 | 36 | 289 | 7.76e-24 | 103 |
MS.gene85231.t1 | AT1G03445 | 26.765 | 340 | 193 | 11 | 237 | 550 | 457 | 766 | 2.50e-22 | 102 |
MS.gene85231.t1 | AT1G03445 | 26.686 | 341 | 194 | 11 | 237 | 551 | 457 | 767 | 2.87e-22 | 102 |
MS.gene85231.t1 | AT5G55260 | 29.487 | 312 | 167 | 12 | 253 | 549 | 14 | 287 | 3.65e-22 | 98.2 |
MS.gene85231.t1 | AT3G46820 | 29.900 | 301 | 167 | 12 | 261 | 551 | 41 | 307 | 4.82e-22 | 97.8 |
MS.gene85231.t1 | AT4G03080 | 27.937 | 315 | 177 | 9 | 240 | 533 | 534 | 819 | 6.30e-21 | 98.6 |
MS.gene85231.t1 | AT2G42500 | 31.120 | 241 | 132 | 9 | 319 | 551 | 37 | 251 | 1.50e-20 | 92.4 |
MS.gene85231.t1 | AT2G27210 | 28.863 | 343 | 183 | 15 | 237 | 550 | 656 | 966 | 2.19e-20 | 97.1 |
MS.gene85231.t1 | AT2G27210 | 28.863 | 343 | 183 | 15 | 237 | 550 | 651 | 961 | 2.36e-20 | 97.1 |
MS.gene85231.t1 | AT1G08420 | 28.863 | 343 | 183 | 15 | 237 | 550 | 667 | 977 | 5.47e-20 | 95.9 |
MS.gene85231.t1 | AT1G08420 | 28.863 | 343 | 183 | 15 | 237 | 550 | 662 | 972 | 6.05e-20 | 95.5 |
MS.gene85231.t1 | AT2G42500 | 36.364 | 143 | 74 | 4 | 261 | 393 | 32 | 167 | 5.86e-18 | 82.8 |
MS.gene85231.t1 | AT2G42500 | 36.879 | 141 | 72 | 4 | 261 | 391 | 32 | 165 | 1.18e-17 | 81.6 |
MS.gene85231.t1 | AT2G42500 | 36.620 | 142 | 73 | 4 | 261 | 392 | 32 | 166 | 1.81e-17 | 81.3 |
Find 169 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTGGAGGGGTTTGATGTTGC+TGG | 0.188781 | 2.4:-4584890 | MS.gene85231:CDS |
CTCTGTGTCTTCTTCCGTTT+TGG | 0.192424 | 2.4:+4581929 | None:intergenic |
TTCCACTGAAAACATAAAAT+TGG | 0.226054 | 2.4:+4582416 | None:intergenic |
GCGATACAACATTGAGAAAA+TGG | 0.226554 | 2.4:-4583789 | MS.gene85231:intron |
TTCGCTTTGATTGCCATATT+TGG | 0.235754 | 2.4:+4582081 | None:intergenic |
AGGAATCAATTCAATGTCTT+TGG | 0.280788 | 2.4:-4584028 | MS.gene85231:CDS |
GGTAATGCATGTCGAAAATT+AGG | 0.285918 | 2.4:-4581778 | MS.gene85231:CDS |
TTGGGCCGTTGAAGTATTCT+TGG | 0.290241 | 2.4:-4582374 | MS.gene85231:CDS |
GTTTGATGTTGCTGGGTGCC+TGG | 0.313887 | 2.4:-4584882 | MS.gene85231:CDS |
TCCCTTCCGGCCCTTGCATC+TGG | 0.320312 | 2.4:+4581021 | None:intergenic |
AAGGAGGTGCAGACCAAATA+TGG | 0.332204 | 2.4:-4582094 | MS.gene85231:CDS |
AGCATCCCCATTGCAGATCT+TGG | 0.332542 | 2.4:+4582852 | None:intergenic |
AGGGCCGGAAGGGATGGTTT+TGG | 0.336560 | 2.4:-4581012 | MS.gene85231:CDS |
ATGTCACTCAATAATATATT+AGG | 0.340490 | 2.4:+4581838 | None:intergenic |
TATTTGTTCGAGCTCGTTGC+TGG | 0.341974 | 2.4:-4576829 | MS.gene85231:CDS |
GTGTATCCTTGTCTTGGTTT+TGG | 0.343605 | 2.4:-4579286 | MS.gene85231:CDS |
TAATGACTCGAAATCAAATT+CGG | 0.346964 | 2.4:+4577068 | None:intergenic |
AGTGGAAATTATGTAGATAA+AGG | 0.355514 | 2.4:-4582400 | MS.gene85231:CDS |
CACACAGTTTGGTTCCTTAC+GGG | 0.358789 | 2.4:+4582549 | None:intergenic |
CAATTAATCTCCACACAGTT+TGG | 0.366927 | 2.4:+4582538 | None:intergenic |
TCCCAGGTGTATCCTTGTCT+TGG | 0.378385 | 2.4:-4579292 | MS.gene85231:intron |
TATTATTGAGTGACATTCTC+TGG | 0.381034 | 2.4:-4581831 | MS.gene85231:CDS |
CTCAGACCATCTCTGTTAGA+TGG | 0.381753 | 2.4:+4581802 | None:intergenic |
GGTGCCTGGTGGTGGAGAGA+AGG | 0.386288 | 2.4:-4584868 | MS.gene85231:CDS |
GGCAGTGATCACGTCATTCT+TGG | 0.391710 | 2.4:+4583814 | None:intergenic |
TGAAGTATTCTTGGTCTTGT+TGG | 0.392796 | 2.4:-4582365 | MS.gene85231:CDS |
AATTTAACCTGCGGGTAGTC+TGG | 0.398196 | 2.4:+4580919 | None:intergenic |
GTTCAGCTTCCGGATGGTTC+AGG | 0.404163 | 2.4:-4577018 | MS.gene85231:CDS |
CCTTCCACCGAAGGAGCTCT+TGG | 0.405522 | 2.4:+4576973 | None:intergenic |
TGACATGGACATCAGTAAAC+TGG | 0.414127 | 2.4:-4579254 | MS.gene85231:CDS |
AAGTTGGAGCGTTCAGCTTC+CGG | 0.415170 | 2.4:-4577028 | MS.gene85231:CDS |
CCACACAGTTTGGTTCCTTA+CGG | 0.416340 | 2.4:+4582548 | None:intergenic |
GAATTTGATTTCGAGTCATT+AGG | 0.418532 | 2.4:-4577066 | MS.gene85231:CDS |
TGGAGGGGTTTGATGTTGCT+GGG | 0.428874 | 2.4:-4584889 | MS.gene85231:CDS |
GCAGGTTCCAAGAGCTCCTT+CGG | 0.430869 | 2.4:-4576980 | MS.gene85231:CDS |
TGTTGTTGGTCGAGATAGAA+AGG | 0.431653 | 2.4:-4583944 | MS.gene85231:intron |
TAAATTCTTAGAGTGTTTCA+AGG | 0.436623 | 2.4:-4582047 | MS.gene85231:CDS |
ACCAGAAAAGGCAGAGGTTG+AGG | 0.439205 | 2.4:+4577110 | None:intergenic |
AAGTAAGGACTTACAAAATC+AGG | 0.439232 | 2.4:+4580334 | None:intergenic |
CAAGGAGCTTCCATTAGCTT+CGG | 0.439373 | 2.4:-4582029 | MS.gene85231:CDS |
AATGATGCTACCTGTAGGTT+AGG | 0.441272 | 2.4:+4576937 | None:intergenic |
ATCCCCAAAACCATCCCTTC+CGG | 0.442562 | 2.4:+4581008 | None:intergenic |
GATTCAAGAGTCATTGTTGT+AGG | 0.443512 | 2.4:-4582505 | MS.gene85231:CDS |
CAATCCAGGAGACTGAGAAC+AGG | 0.445629 | 2.4:-4576570 | MS.gene85231:intron |
TGTTGCTGGGTGCCTGGTGG+TGG | 0.448681 | 2.4:-4584876 | MS.gene85231:CDS |
TCATGTTGTGCAGAGCTTTG+TGG | 0.450150 | 2.4:-4582605 | MS.gene85231:CDS |
GGGTGTCATAAGATTATAGA+AGG | 0.451513 | 2.4:-4584048 | MS.gene85231:CDS |
TCTAAGGTGACGCAGTCATC+AGG | 0.452247 | 2.4:+4582691 | None:intergenic |
CGCATCTTGAAGACCAGAAA+AGG | 0.452901 | 2.4:+4577098 | None:intergenic |
CATGTCGAAAATTAGGATTA+TGG | 0.453821 | 2.4:-4581771 | MS.gene85231:CDS |
AAGAAAGCCTCGGTGCAATC+AGG | 0.453949 | 2.4:+4581742 | None:intergenic |
AATGACTCGAAATCAAATTC+GGG | 0.459895 | 2.4:+4577069 | None:intergenic |
ATAGATCACGATGGACAATC+AGG | 0.469936 | 2.4:-4580967 | MS.gene85231:CDS |
ACATAAAATTGGTTCTCAAA+AGG | 0.471208 | 2.4:+4582427 | None:intergenic |
TCAGCAATAACCGAAGCTAA+TGG | 0.471706 | 2.4:+4582019 | None:intergenic |
CATGTCCTGAACCCACTCTA+AGG | 0.472009 | 2.4:+4582675 | None:intergenic |
CTGGTCATCCAAGCCTTCAT+AGG | 0.472929 | 2.4:+4583627 | None:intergenic |
TAACATATGAATGATATCTC+TGG | 0.474469 | 2.4:+4583660 | None:intergenic |
ATCTTGGTTGACTCAACAAC+AGG | 0.475004 | 2.4:+4582868 | None:intergenic |
CGTCACCTTAGAGTGGGTTC+AGG | 0.480369 | 2.4:-4582680 | MS.gene85231:CDS |
TTATGTAGATAAAGGAGCTT+GGG | 0.483249 | 2.4:-4582392 | MS.gene85231:CDS |
GCCTCTGCCTCCTAACCTAC+AGG | 0.493627 | 2.4:-4576947 | MS.gene85231:intron |
GGAAGCTGAACGCTCCAACT+TGG | 0.497402 | 2.4:+4577030 | None:intergenic |
AGATATTGCACTACAAGGTA+TGG | 0.497647 | 2.4:-4582124 | MS.gene85231:CDS |
GTGCCTGGTGGTGGAGAGAA+GGG | 0.499641 | 2.4:-4584867 | MS.gene85231:CDS |
AGTCAACCAAGATCTGCAAT+GGG | 0.502301 | 2.4:-4582858 | MS.gene85231:CDS |
CACAAAGAGATAATTAAGAG+TGG | 0.502433 | 2.4:-4584069 | MS.gene85231:CDS |
ATAGCGCGTGGAGTTGTTGT+TGG | 0.503009 | 2.4:-4583958 | MS.gene85231:CDS |
ATTATGTAGATAAAGGAGCT+TGG | 0.505687 | 2.4:-4582393 | MS.gene85231:CDS |
CCAAGAGCTCCTTCGGTGGA+AGG | 0.505692 | 2.4:-4576973 | MS.gene85231:CDS |
CAGTTTAATCCTTACTTGGT+CGG | 0.507751 | 2.4:+4583513 | None:intergenic |
AGAGGATGCATTTAGTATTG+AGG | 0.509968 | 2.4:-4583606 | MS.gene85231:CDS |
CATGACTTTCATCCTTGAGA+AGG | 0.512950 | 2.4:-4582656 | MS.gene85231:CDS |
GGCCTAGCTGTTGATACTCT+AGG | 0.512971 | 2.4:+4583547 | None:intergenic |
ATGCTTCTATTGAAGCATGC+AGG | 0.513600 | 2.4:-4582454 | MS.gene85231:CDS |
ACTTGGTCGGCAAGTAACTC+AGG | 0.515239 | 2.4:+4583526 | None:intergenic |
TTGCAGGAGCCACACAATGC+TGG | 0.515785 | 2.4:-4576859 | MS.gene85231:intron |
TCCCTTCAGGAAAGCCAAAA+CGG | 0.516442 | 2.4:-4581943 | MS.gene85231:CDS |
TAGGATGTCCTATGAAGGCT+TGG | 0.518415 | 2.4:-4583635 | MS.gene85231:CDS |
TAGGGACCCGTGTTTCTGCA+CGG | 0.523124 | 2.4:-4576653 | MS.gene85231:CDS |
TCTCCCTTCTCTCCACCACC+AGG | 0.524953 | 2.4:+4584864 | None:intergenic |
AGGCGGTACTCAAGTTGTGC+AGG | 0.526945 | 2.4:-4576998 | MS.gene85231:CDS |
GATTTGAATGACTGAAAGTA+AGG | 0.528190 | 2.4:+4580319 | None:intergenic |
ATATCATTCATATGTTAAGT+AGG | 0.528746 | 2.4:-4583654 | MS.gene85231:CDS |
TCAATACTAAATGCATCCTC+TGG | 0.535882 | 2.4:+4583608 | None:intergenic |
AAACAGAGATATAACAATGA+AGG | 0.537487 | 2.4:-4580379 | MS.gene85231:CDS |
AGGGACCCGTGTTTCTGCAC+GGG | 0.538226 | 2.4:-4576652 | MS.gene85231:intron |
TGTGTGGAGATTAATTGTCT+TGG | 0.538603 | 2.4:-4582532 | MS.gene85231:CDS |
AATAATATATTAGGACCCTC+AGG | 0.540115 | 2.4:+4581847 | None:intergenic |
TTTAGAGAAAGAATGAGTTA+CGG | 0.542103 | 2.4:-4584926 | None:intergenic |
GAGTCAACCAAGATCTGCAA+TGG | 0.543443 | 2.4:-4582859 | MS.gene85231:CDS |
ACCTGTAGGTTAGGAGGCAG+AGG | 0.544165 | 2.4:+4576946 | None:intergenic |
TGAGTACCGCCTGAACCATC+CGG | 0.547100 | 2.4:+4577009 | None:intergenic |
TCGAAAATTAGGATTATGGT+GGG | 0.547557 | 2.4:-4581767 | MS.gene85231:CDS |
AAGTAGAGCTAGGAAACGTA+AGG | 0.548383 | 2.4:-4576527 | MS.gene85231:CDS |
TTGCATAGATTCTCCTCCTG+AGG | 0.548536 | 2.4:-4581863 | MS.gene85231:CDS |
AGGATGAAAGAAATTGCTCA+TGG | 0.553009 | 2.4:-4583586 | MS.gene85231:CDS |
ACCAGATGCAAGGGCCGGAA+GGG | 0.553074 | 2.4:-4581022 | MS.gene85231:CDS |
ATGACTGCGTCACCTTAGAG+TGG | 0.554274 | 2.4:-4582687 | MS.gene85231:CDS |
AAAACACATGATTGCAGCAA+GGG | 0.556443 | 2.4:-4576803 | MS.gene85231:intron |
TGCATAGATTCTCCTCCTGA+GGG | 0.558592 | 2.4:-4581862 | MS.gene85231:CDS |
GACCAGATGCAAGGGCCGGA+AGG | 0.558675 | 2.4:-4581023 | MS.gene85231:CDS |
TCTTCTGTGAAGCCTTCTCA+AGG | 0.560176 | 2.4:+4582644 | None:intergenic |
GATGCAAGGGCCGGAAGGGA+TGG | 0.561484 | 2.4:-4581018 | MS.gene85231:CDS |
TTGTTGTAGGCGACATACAC+GGG | 0.562402 | 2.4:-4582492 | MS.gene85231:CDS |
GACCGTGTTCATACTACTCA+CGG | 0.563476 | 2.4:-4581998 | MS.gene85231:CDS |
CACATGAAGGACCAGATGCA+AGG | 0.564775 | 2.4:-4581032 | MS.gene85231:intron |
TGCTCGTAGTATTTCCCGTA+AGG | 0.566936 | 2.4:-4582563 | MS.gene85231:CDS |
ATTGTTGTAGGCGACATACA+CGG | 0.571020 | 2.4:-4582493 | MS.gene85231:CDS |
GGAGATTAATTGTCTTGGAG+AGG | 0.571234 | 2.4:-4582527 | MS.gene85231:CDS |
TTAAGTAGGATGTCCTATGA+AGG | 0.572031 | 2.4:-4583640 | MS.gene85231:CDS |
GCATATATAATGCTCCAAGT+TGG | 0.572630 | 2.4:-4577044 | MS.gene85231:CDS |
TGTATACCCGTGCAGAAACA+CGG | 0.573699 | 2.4:+4576646 | None:intergenic |
GGAAAGGCTAAGAGTGTGGA+GGG | 0.576082 | 2.4:-4584905 | MS.gene85231:CDS |
CAGCTTTGCGAAGTAGAGCT+AGG | 0.576366 | 2.4:-4576537 | MS.gene85231:CDS |
GATGCTACCTGTAGGTTAGG+AGG | 0.576637 | 2.4:+4576940 | None:intergenic |
ATCTAACAGAGATGGTCTGA+GGG | 0.577450 | 2.4:-4581800 | MS.gene85231:CDS |
ATCTTGATTCGTGATTTCCA+CGG | 0.577639 | 2.4:+4582143 | None:intergenic |
GAAGGACCAGATGCAAGGGC+CGG | 0.586393 | 2.4:-4581027 | MS.gene85231:intron |
ATGTTTCTTTAAGAAAGCCT+CGG | 0.586681 | 2.4:+4581732 | None:intergenic |
TTTCTCAATGTTGTATCGCA+AGG | 0.586714 | 2.4:+4583793 | None:intergenic |
GTCGAAAATTAGGATTATGG+TGG | 0.591000 | 2.4:-4581768 | MS.gene85231:CDS |
TGGAGCGTTCAGCTTCCGGA+TGG | 0.596033 | 2.4:-4577024 | MS.gene85231:CDS |
ACAACATGACATAATTCAGT+TGG | 0.597658 | 2.4:+4582619 | None:intergenic |
TGATGTTGCTGGGTGCCTGG+TGG | 0.599220 | 2.4:-4584879 | MS.gene85231:CDS |
ACAAAGAGATAATTAAGAGT+GGG | 0.601166 | 2.4:-4584068 | MS.gene85231:CDS |
AGAGGCAATCCTTCCACCGA+AGG | 0.602990 | 2.4:+4576964 | None:intergenic |
CATCTAACAGAGATGGTCTG+AGG | 0.608026 | 2.4:-4581801 | MS.gene85231:CDS |
AGAAAGAATGAGTTACGGAA+AGG | 0.609453 | 2.4:-4584921 | None:intergenic |
GATACATGAAGATGACATGT+TGG | 0.615350 | 2.4:-4582806 | MS.gene85231:CDS |
TCAAAACCATCTAACAGAGA+TGG | 0.617338 | 2.4:-4581808 | MS.gene85231:CDS |
GGTGGTGGAGAGAAGGGAGA+AGG | 0.617553 | 2.4:-4584861 | MS.gene85231:intron |
GGATGAAAGAAATTGCTCAT+GGG | 0.619244 | 2.4:-4583585 | MS.gene85231:CDS |
CTCCGTGAGTAGTATGAACA+CGG | 0.619289 | 2.4:+4581996 | None:intergenic |
AATCCAGGAGACTGAGAACA+GGG | 0.622954 | 2.4:-4576569 | MS.gene85231:intron |
GGTTCCAAGAGCTCCTTCGG+TGG | 0.623152 | 2.4:-4576977 | MS.gene85231:CDS |
ACATGAAGGACCAGATGCAA+GGG | 0.625654 | 2.4:-4581031 | MS.gene85231:intron |
TACTCATAACCAGCATTGTG+TGG | 0.626428 | 2.4:+4576850 | None:intergenic |
GGGTAGATGTCACAATCGAT+CGG | 0.627834 | 2.4:-4576506 | MS.gene85231:CDS |
CGGAAAGGCTAAGAGTGTGG+AGG | 0.628291 | 2.4:-4584906 | MS.gene85231:CDS |
CAAGACCAAGAATACTTCAA+CGG | 0.637454 | 2.4:+4582369 | None:intergenic |
AACCTAGAGTATCAACAGCT+AGG | 0.639256 | 2.4:-4583549 | MS.gene85231:CDS |
TAGTGCTCCAGACTACCCGC+AGG | 0.640559 | 2.4:-4580926 | MS.gene85231:intron |
AATCAAGATATTGCACTACA+AGG | 0.640706 | 2.4:-4582129 | MS.gene85231:CDS |
TTGAAGACCAGAAAAGGCAG+AGG | 0.641243 | 2.4:+4577104 | None:intergenic |
TTACGGAAAGGCTAAGAGTG+TGG | 0.643200 | 2.4:-4584909 | MS.gene85231:CDS |
TGACTGCGTCACCTTAGAGT+GGG | 0.643324 | 2.4:-4582686 | MS.gene85231:CDS |
CAAATCAGCAGAAAGACCAA+TGG | 0.645891 | 2.4:-4580302 | MS.gene85231:intron |
TAAAACACATGATTGCAGCA+AGG | 0.651317 | 2.4:-4576804 | MS.gene85231:CDS |
GTATACCCGTGCAGAAACAC+GGG | 0.655394 | 2.4:+4576647 | None:intergenic |
TAAAGAGTGTATCTACTCCG+TGG | 0.656525 | 2.4:-4582160 | MS.gene85231:intron |
AGTAGAGCTAGGAAACGTAA+GGG | 0.661068 | 2.4:-4576526 | MS.gene85231:CDS |
CAGCTTCCGGATGGTTCAGG+CGG | 0.661669 | 2.4:-4577015 | MS.gene85231:CDS |
AAACAGCGGCATGATTGCTG+CGG | 0.665828 | 2.4:+4581966 | None:intergenic |
AAGGTGACGCAGTCATCAGG+AGG | 0.669794 | 2.4:+4582694 | None:intergenic |
ATGAAGGCTTGGATGACCAG+AGG | 0.673176 | 2.4:-4583624 | MS.gene85231:CDS |
CCGTAAGGAACCAAACTGTG+TGG | 0.686223 | 2.4:-4582548 | MS.gene85231:CDS |
CTTTCCTGAAGGGAAAACAG+CGG | 0.692197 | 2.4:+4581952 | None:intergenic |
CGAAAATTAGGATTATGGTG+GGG | 0.693959 | 2.4:-4581766 | MS.gene85231:CDS |
ATGATGAGAGAAATAGCGCG+TGG | 0.696217 | 2.4:-4583970 | MS.gene85231:CDS |
GTGTTCATACTACTCACGGA+GGG | 0.708353 | 2.4:-4581994 | MS.gene85231:CDS |
GAAAGGCTAAGAGTGTGGAG+GGG | 0.711838 | 2.4:-4584904 | MS.gene85231:CDS |
AATATATTAGGACCCTCAGG+AGG | 0.717791 | 2.4:+4581850 | None:intergenic |
TCAGCACCAAAACCAAGACA+AGG | 0.723654 | 2.4:+4579280 | None:intergenic |
GGATACAGCATAGATCACGA+TGG | 0.727398 | 2.4:-4580976 | MS.gene85231:CDS |
GTCAACCAAGATCTGCAATG+GGG | 0.743093 | 2.4:-4582857 | MS.gene85231:CDS |
TCTAACAGAGATGGTCTGAG+GGG | 0.744889 | 2.4:-4581799 | MS.gene85231:CDS |
GTGGGGTCCTGATTGCACCG+AGG | 0.749686 | 2.4:-4581749 | MS.gene85231:CDS |
CGTGTTCATACTACTCACGG+AGG | 0.763580 | 2.4:-4581995 | MS.gene85231:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 4576503 | 4584936 | 4576503 | ID=MS.gene85231 |
chr2.4 | mRNA | 4576503 | 4584936 | 4576503 | ID=MS.gene85231.t1;Parent=MS.gene85231 |
chr2.4 | exon | 4584862 | 4584936 | 4584862 | ID=MS.gene85231.t1.exon1;Parent=MS.gene85231.t1 |
chr2.4 | CDS | 4584862 | 4584936 | 4584862 | ID=cds.MS.gene85231.t1;Parent=MS.gene85231.t1 |
chr2.4 | exon | 4583945 | 4584112 | 4583945 | ID=MS.gene85231.t1.exon2;Parent=MS.gene85231.t1 |
chr2.4 | CDS | 4583945 | 4584112 | 4583945 | ID=cds.MS.gene85231.t1;Parent=MS.gene85231.t1 |
chr2.4 | exon | 4583790 | 4583840 | 4583790 | ID=MS.gene85231.t1.exon3;Parent=MS.gene85231.t1 |
chr2.4 | CDS | 4583790 | 4583840 | 4583790 | ID=cds.MS.gene85231.t1;Parent=MS.gene85231.t1 |
chr2.4 | exon | 4583528 | 4583692 | 4583528 | ID=MS.gene85231.t1.exon4;Parent=MS.gene85231.t1 |
chr2.4 | CDS | 4583528 | 4583692 | 4583528 | ID=cds.MS.gene85231.t1;Parent=MS.gene85231.t1 |
chr2.4 | exon | 4582364 | 4582926 | 4582364 | ID=MS.gene85231.t1.exon5;Parent=MS.gene85231.t1 |
chr2.4 | CDS | 4582364 | 4582926 | 4582364 | ID=cds.MS.gene85231.t1;Parent=MS.gene85231.t1 |
chr2.4 | exon | 4581930 | 4582177 | 4581930 | ID=MS.gene85231.t1.exon6;Parent=MS.gene85231.t1 |
chr2.4 | CDS | 4581930 | 4582177 | 4581930 | ID=cds.MS.gene85231.t1;Parent=MS.gene85231.t1 |
chr2.4 | exon | 4581731 | 4581895 | 4581731 | ID=MS.gene85231.t1.exon7;Parent=MS.gene85231.t1 |
chr2.4 | CDS | 4581731 | 4581895 | 4581731 | ID=cds.MS.gene85231.t1;Parent=MS.gene85231.t1 |
chr2.4 | exon | 4580927 | 4581045 | 4580927 | ID=MS.gene85231.t1.exon8;Parent=MS.gene85231.t1 |
chr2.4 | CDS | 4580927 | 4581045 | 4580927 | ID=cds.MS.gene85231.t1;Parent=MS.gene85231.t1 |
chr2.4 | exon | 4580303 | 4580407 | 4580303 | ID=MS.gene85231.t1.exon9;Parent=MS.gene85231.t1 |
chr2.4 | CDS | 4580303 | 4580407 | 4580303 | ID=cds.MS.gene85231.t1;Parent=MS.gene85231.t1 |
chr2.4 | exon | 4579240 | 4579308 | 4579240 | ID=MS.gene85231.t1.exon10;Parent=MS.gene85231.t1 |
chr2.4 | CDS | 4579240 | 4579308 | 4579240 | ID=cds.MS.gene85231.t1;Parent=MS.gene85231.t1 |
chr2.4 | exon | 4576948 | 4577142 | 4576948 | ID=MS.gene85231.t1.exon11;Parent=MS.gene85231.t1 |
chr2.4 | CDS | 4576948 | 4577142 | 4576948 | ID=cds.MS.gene85231.t1;Parent=MS.gene85231.t1 |
chr2.4 | exon | 4576804 | 4576875 | 4576804 | ID=MS.gene85231.t1.exon12;Parent=MS.gene85231.t1 |
chr2.4 | CDS | 4576804 | 4576875 | 4576804 | ID=cds.MS.gene85231.t1;Parent=MS.gene85231.t1 |
chr2.4 | exon | 4576653 | 4576672 | 4576653 | ID=MS.gene85231.t1.exon13;Parent=MS.gene85231.t1 |
chr2.4 | CDS | 4576653 | 4576672 | 4576653 | ID=cds.MS.gene85231.t1;Parent=MS.gene85231.t1 |
chr2.4 | exon | 4576503 | 4576584 | 4576503 | ID=MS.gene85231.t1.exon14;Parent=MS.gene85231.t1 |
chr2.4 | CDS | 4576503 | 4576584 | 4576503 | ID=cds.MS.gene85231.t1;Parent=MS.gene85231.t1 |
Gene Sequence |
Protein sequence |