AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene85254

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85254.t1 MTR_3g084040 91.935 124 8 1 1 124 1 122 1.84e-74 218
MS.gene85254.t1 MTR_3g084040 90.099 101 8 1 1 101 1 99 2.18e-62 186
MS.gene85254.t1 MTR_4g109540 53.719 121 51 3 1 116 1 121 8.37e-37 126
MS.gene85254.t1 MTR_7g013740 48.739 119 58 2 1 116 1 119 4.56e-35 119
MS.gene85254.t1 MTR_7g013730 48.819 127 58 3 1 124 1 123 4.63e-35 122
MS.gene85254.t1 MTR_4g109540 50.388 129 51 4 1 116 1 129 4.47e-34 120
MS.gene85254.t1 MTR_3g025880 44.275 131 62 3 1 124 1 127 5.85e-31 114
MS.gene85254.t1 MTR_3g014000 41.727 139 59 5 1 131 1 125 4.41e-26 95.5
MS.gene85254.t1 MTR_3g080130 50.588 85 41 1 38 121 36 120 5.28e-26 95.5
MS.gene85254.t1 MTR_7g105260 46.535 101 50 2 25 121 19 119 1.67e-24 91.7
MS.gene85254.t1 MTR_4g070080 51.316 76 36 1 39 113 7 82 7.91e-24 89.7
MS.gene85254.t1 MTR_4g070080 51.316 76 36 1 39 113 7 82 1.96e-23 89.7
MS.gene85254.t1 MTR_4g063560 43.820 89 49 1 28 115 23 111 2.50e-22 85.5
MS.gene85254.t1 MTR_4g070190 48.684 76 38 1 39 113 9 84 3.22e-22 86.7
MS.gene85254.t1 MTR_4g070140 50.000 76 37 1 39 113 9 84 1.10e-21 85.9
MS.gene85254.t1 MTR_7g099940 42.149 121 60 4 1 117 1 115 2.23e-19 78.6
MS.gene85254.t1 MTR_3g075500 44.318 88 44 2 39 125 207 290 2.46e-19 81.6
MS.gene85254.t1 MTR_3g075500 39.362 94 53 2 31 123 102 192 2.50e-11 59.7
MS.gene85254.t1 MTR_1g064230 49.367 79 39 1 39 116 197 275 1.17e-18 79.7
MS.gene85254.t1 MTR_4g081520 45.055 91 47 2 33 120 44 134 2.65e-18 75.9
MS.gene85254.t1 MTR_1g092860 36.792 106 63 2 24 128 178 280 2.39e-17 76.3
MS.gene85254.t1 MTR_4g104470 44.304 79 43 1 39 116 217 295 7.92e-17 75.1
MS.gene85254.t1 MTR_4g104470 43.529 85 45 2 39 122 123 205 2.96e-12 62.4
MS.gene85254.t1 MTR_1g045510 45.679 81 43 1 39 118 205 285 2.06e-16 73.6
MS.gene85254.t1 MTR_1g045510 35.294 85 54 1 38 121 113 197 5.27e-12 61.6
MS.gene85254.t1 MTR_3g055990 45.570 79 42 1 39 117 7 84 4.01e-16 73.9
MS.gene85254.t1 MTR_3g055990 45.570 79 42 1 39 117 7 84 4.26e-16 73.6
MS.gene85254.t1 MTR_6g004810 35.870 92 58 1 33 123 128 219 3.13e-15 71.2
MS.gene85254.t1 MTR_4g074930 38.235 102 62 1 32 133 323 423 5.62e-15 70.5
MS.gene85254.t1 MTR_4g074930 38.235 102 62 1 32 133 358 458 5.67e-15 70.5
MS.gene85254.t1 MTR_4g074930 38.235 102 62 1 32 133 370 470 5.68e-15 70.5
MS.gene85254.t1 MTR_4g074930 38.235 102 62 1 32 133 335 435 5.81e-15 70.5
MS.gene85254.t1 MTR_3g065190 42.697 89 49 2 38 124 112 200 7.00e-15 70.1
MS.gene85254.t1 MTR_3g116130 35.714 84 54 0 38 121 29 112 1.64e-14 68.6
MS.gene85254.t1 MTR_1g097280 34.409 93 60 1 40 131 31 123 1.76e-14 69.3
MS.gene85254.t1 MTR_1g073690 36.471 85 54 0 34 118 108 192 2.13e-14 68.9
MS.gene85254.t1 MTR_1g073690 36.709 79 49 1 39 117 7 84 1.26e-11 60.8
MS.gene85254.t1 MTR_3g116130 35.714 84 54 0 38 121 29 112 2.47e-14 68.6
MS.gene85254.t1 MTR_3g029580 35.556 90 54 3 24 110 17 105 4.26e-14 64.7
MS.gene85254.t1 MTR_4g124940 45.333 75 40 1 40 113 133 207 4.65e-14 67.8
MS.gene85254.t1 MTR_7g117495 40.580 69 41 0 38 106 18 86 4.68e-14 67.0
MS.gene85254.t1 MTR_7g117495 40.580 69 41 0 38 106 18 86 4.73e-14 67.0
MS.gene85254.t1 MTR_5g097580 41.250 80 46 1 37 116 5 83 5.27e-14 67.8
MS.gene85254.t1 MTR_6g477870 35.000 80 51 1 38 116 95 174 5.33e-14 65.5
MS.gene85254.t1 MTR_5g097580 41.250 80 46 1 37 116 5 83 5.62e-14 67.8
MS.gene85254.t1 MTR_8g022050 45.122 82 43 2 40 120 149 229 5.65e-14 67.8
MS.gene85254.t1 MTR_4g035310 35.484 93 56 1 38 126 16 108 5.69e-14 67.0
MS.gene85254.t1 MTR_4g035310 35.484 93 56 1 38 126 16 108 5.78e-14 66.6
MS.gene85254.t1 MTR_7g106440 40.230 87 51 1 36 121 210 296 1.01e-13 66.6
MS.gene85254.t1 MTR_8g024520 42.029 69 40 0 38 106 25 93 1.03e-13 66.2
MS.gene85254.t1 MTR_8g024520 42.029 69 40 0 38 106 25 93 1.05e-13 66.2
MS.gene85254.t1 MTR_5g071540 34.021 97 55 2 23 110 16 112 3.14e-13 62.8
MS.gene85254.t1 MTR_2g026180 40.244 82 48 1 35 116 1 81 3.45e-13 65.5
MS.gene85254.t1 MTR_2g026180 27.869 122 79 2 9 130 85 197 1.90e-11 60.5
MS.gene85254.t1 MTR_3g092490 40.260 77 44 1 38 112 26 102 3.92e-13 63.2
MS.gene85254.t1 MTR_1g036430 41.176 85 49 1 37 121 161 244 4.33e-13 65.1
MS.gene85254.t1 MTR_1g019150 37.000 100 59 2 19 114 10 109 4.35e-13 65.1
MS.gene85254.t1 MTR_3g103420 34.118 85 56 0 33 117 112 196 4.89e-13 64.7
MS.gene85254.t1 MTR_3g103420 38.636 88 53 1 29 116 1 87 9.50e-12 61.2
MS.gene85254.t1 MTR_4g081510 32.759 116 68 3 3 116 16 123 5.10e-13 63.2
MS.gene85254.t1 MTR_2g096560 36.250 80 50 1 38 116 7 86 6.55e-13 60.5
MS.gene85254.t1 MTR_3g092490 40.260 77 44 1 38 112 26 102 7.24e-13 63.5
MS.gene85254.t1 MTR_3g092490 40.260 77 44 1 38 112 26 102 7.54e-13 63.5
MS.gene85254.t1 MTR_7g107580 38.824 85 51 1 38 121 349 433 1.01e-12 63.9
MS.gene85254.t1 MTR_7g107580 38.824 85 51 1 38 121 348 432 1.13e-12 63.9
MS.gene85254.t1 MTR_5g064120 35.065 77 50 0 38 114 16 92 1.22e-12 63.2
MS.gene85254.t1 MTR_4g117350 37.500 80 49 1 36 114 69 148 1.61e-12 61.2
MS.gene85254.t1 MTR_5g044970 36.250 80 50 1 35 113 7 86 2.15e-12 61.2
MS.gene85254.t1 MTR_3g109090 42.683 82 45 2 40 120 131 211 2.34e-12 63.2
MS.gene85254.t1 MTR_3g109090 42.683 82 45 2 40 120 147 227 2.41e-12 63.2
MS.gene85254.t1 MTR_8g463890 43.056 72 41 0 35 106 70 141 2.57e-12 62.8
MS.gene85254.t1 MTR_3g075500 40.625 64 37 1 39 101 207 270 2.61e-12 62.4
MS.gene85254.t1 MTR_3g075500 39.362 94 53 2 31 123 102 192 1.87e-11 60.1
MS.gene85254.t1 MTR_3g029580 34.146 82 50 3 23 101 16 96 5.84e-12 59.3
MS.gene85254.t1 MTR_1g020080 35.870 92 57 2 40 129 192 283 9.85e-12 60.8
MS.gene85254.t1 MTR_1g056520 38.272 81 49 1 36 115 205 285 1.56e-11 60.5
MS.gene85254.t1 MTR_1g020080 36.364 88 54 2 40 125 192 279 1.67e-11 60.5
MS.gene85254.t1 MTR_4g036415 39.024 82 49 1 33 113 446 527 2.01e-11 60.5
MS.gene85254.t1 MTR_2g026180 27.869 122 79 2 9 130 15 127 2.35e-11 60.1
MS.gene85254.t1 MTR_4g085540 37.975 79 48 1 37 114 33 111 4.07e-11 59.7
MS.gene85254.t1 MTR_4g088010 30.769 91 61 1 35 125 160 248 4.32e-11 59.3
MS.gene85254.t1 MTR_4g088010 39.189 74 45 0 33 106 71 144 8.13e-11 58.5
MS.gene85254.t1 MTR_2g097960 39.759 83 48 2 40 120 110 192 5.79e-11 58.9
MS.gene85254.t1 MTR_5g017280 36.145 83 52 1 35 117 1 82 9.26e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85254.t1 AT3G23830 60.163 123 44 4 1 122 1 119 1.11e-44 142
MS.gene85254.t1 AT3G23830 60.163 123 44 4 1 122 1 119 1.11e-44 142
MS.gene85254.t1 AT4G13850 61.789 123 42 4 1 122 1 119 2.07e-43 139
MS.gene85254.t1 AT4G13850 63.248 117 39 3 1 116 1 114 2.14e-43 139
MS.gene85254.t1 AT4G13850 61.789 123 42 4 1 122 1 119 2.72e-43 139
MS.gene85254.t1 AT4G13850 61.789 123 42 4 1 122 1 119 3.16e-43 139
MS.gene85254.t1 AT5G61030 56.303 119 49 2 1 116 1 119 1.59e-40 137
MS.gene85254.t1 AT5G61030 56.303 119 49 2 1 116 1 119 1.59e-40 137
MS.gene85254.t1 AT1G74230 53.913 115 49 1 1 115 1 111 9.61e-38 129
MS.gene85254.t1 AT5G47320 56.034 116 43 3 1 115 1 109 4.15e-34 118
MS.gene85254.t1 AT3G08000 58.333 84 34 1 39 121 42 125 2.02e-27 99.4
MS.gene85254.t1 AT5G06210 50.000 96 45 2 33 127 29 122 1.67e-23 89.4
MS.gene85254.t1 AT2G21660 48.684 76 38 1 39 113 9 84 2.52e-21 84.0
MS.gene85254.t1 AT5G59865 47.191 89 46 1 36 123 24 112 3.16e-21 82.4
MS.gene85254.t1 AT2G21660 48.684 76 38 1 39 113 9 84 3.75e-21 84.0
MS.gene85254.t1 AT2G37220 52.500 80 37 1 38 116 204 283 5.82e-21 85.9
MS.gene85254.t1 AT2G37220 41.860 86 43 2 39 123 92 171 3.75e-12 62.0
MS.gene85254.t1 AT3G53460 50.602 83 40 1 39 120 258 340 1.94e-20 85.1
MS.gene85254.t1 AT3G53460 43.023 86 42 2 39 123 100 179 6.58e-11 58.9
MS.gene85254.t1 AT3G53460 50.602 83 40 1 39 120 258 340 1.94e-20 85.1
MS.gene85254.t1 AT3G53460 43.023 86 42 2 39 123 100 179 6.58e-11 58.9
MS.gene85254.t1 AT3G53460 50.602 83 40 1 39 120 258 340 1.94e-20 85.1
MS.gene85254.t1 AT3G53460 43.023 86 42 2 39 123 100 179 6.58e-11 58.9
MS.gene85254.t1 AT3G53460 50.602 83 40 1 39 120 279 361 2.20e-20 85.5
MS.gene85254.t1 AT4G39260 39.175 97 47 2 39 134 7 92 3.42e-20 79.3
MS.gene85254.t1 AT4G24770 47.126 87 42 2 39 124 245 328 9.95e-19 80.5
MS.gene85254.t1 AT4G24770 39.000 100 57 2 25 123 137 233 3.57e-12 62.4
MS.gene85254.t1 AT4G24770 47.126 87 42 2 39 124 245 328 9.95e-19 80.5
MS.gene85254.t1 AT4G24770 39.000 100 57 2 25 123 137 233 3.57e-12 62.4
MS.gene85254.t1 AT3G26420 45.882 85 45 1 39 122 8 92 1.28e-18 79.0
MS.gene85254.t1 AT1G18630 38.261 115 65 2 1 114 4 113 4.38e-18 75.5
MS.gene85254.t1 AT5G50250 44.304 79 43 1 39 116 208 286 7.41e-18 77.8
MS.gene85254.t1 AT5G50250 43.678 87 45 2 38 123 113 196 1.07e-12 63.5
MS.gene85254.t1 AT2G37510 48.052 77 39 1 35 110 31 107 8.00e-18 74.7
MS.gene85254.t1 AT4G39260 40.789 76 44 1 39 113 7 82 2.41e-17 73.2
MS.gene85254.t1 AT4G39260 40.789 76 44 1 39 113 7 82 6.38e-17 73.2
MS.gene85254.t1 AT1G60000 48.193 83 42 1 36 117 175 257 8.48e-17 74.3
MS.gene85254.t1 AT4G13860 46.667 75 39 1 37 110 2 76 9.15e-17 70.5
MS.gene85254.t1 AT3G46020 42.500 80 45 1 37 115 6 85 2.07e-16 70.1
MS.gene85254.t1 AT5G54580 42.683 82 46 1 37 117 55 136 6.48e-16 70.1
MS.gene85254.t1 AT3G20930 34.234 111 61 2 19 128 274 373 6.90e-16 72.8
MS.gene85254.t1 AT1G76460 38.462 91 53 1 38 128 24 111 1.65e-15 71.2
MS.gene85254.t1 AT5G55550 43.038 79 44 1 39 117 7 84 3.06e-15 71.2
MS.gene85254.t1 AT5G55550 43.038 79 44 1 39 117 7 84 3.06e-15 71.2
MS.gene85254.t1 AT5G55550 43.038 79 44 1 39 117 7 84 3.06e-15 71.2
MS.gene85254.t1 AT5G55550 43.038 79 44 1 39 117 7 84 3.06e-15 71.2
MS.gene85254.t1 AT5G55550 43.038 79 44 1 39 117 7 84 3.06e-15 71.2
MS.gene85254.t1 AT1G60650 38.235 102 58 2 37 133 11 112 3.10e-15 70.5
MS.gene85254.t1 AT1G60650 38.235 102 58 2 37 133 11 112 3.10e-15 70.5
MS.gene85254.t1 AT5G55550 43.038 79 44 1 39 117 7 84 3.37e-15 71.2
MS.gene85254.t1 AT5G55550 43.038 79 44 1 39 117 7 84 3.37e-15 71.2
MS.gene85254.t1 AT5G55550 43.038 79 44 1 39 117 7 84 3.37e-15 71.2
MS.gene85254.t1 AT5G55550 43.038 79 44 1 39 117 7 84 3.37e-15 71.2
MS.gene85254.t1 AT3G52380 41.573 89 51 1 36 123 217 305 4.02e-15 70.5
MS.gene85254.t1 AT1G22330 37.500 96 57 1 38 133 17 109 4.34e-15 70.1
MS.gene85254.t1 AT5G55550 45.714 70 37 1 39 108 7 75 8.09e-15 70.1
MS.gene85254.t1 AT5G55550 45.714 70 37 1 39 108 7 75 8.21e-15 70.1
MS.gene85254.t1 AT2G22100 37.778 90 56 0 33 122 158 247 1.44e-14 69.3
MS.gene85254.t1 AT1G48920 39.216 102 57 1 37 133 296 397 1.54e-14 69.3
MS.gene85254.t1 AT1G54080 43.038 79 44 1 36 113 146 224 1.54e-14 69.3
MS.gene85254.t1 AT3G14100 44.000 75 41 1 40 113 146 220 2.28e-14 68.9
MS.gene85254.t1 AT2G46780 37.234 94 54 1 38 126 22 115 2.29e-14 68.6
MS.gene85254.t1 AT2G46780 37.234 94 54 1 38 126 22 115 2.29e-14 68.6
MS.gene85254.t1 AT1G33470 42.029 69 40 0 38 106 7 75 2.32e-14 67.8
MS.gene85254.t1 AT1G33470 42.029 69 40 0 38 106 7 75 2.37e-14 67.8
MS.gene85254.t1 AT3G07810 41.026 78 45 1 39 116 7 83 2.39e-14 68.9
MS.gene85254.t1 AT3G07810 41.026 78 45 1 39 116 7 83 2.39e-14 68.9
MS.gene85254.t1 AT1G33470 42.029 69 40 0 38 106 7 75 2.46e-14 67.4
MS.gene85254.t1 AT1G22910 38.961 77 47 0 38 114 13 89 2.72e-14 67.4
MS.gene85254.t1 AT1G22910 38.961 77 47 0 38 114 13 89 2.87e-14 67.4
MS.gene85254.t1 AT5G04280 39.744 78 46 1 38 114 7 84 2.88e-14 68.2
MS.gene85254.t1 AT2G18510 41.573 89 50 2 38 124 112 200 2.95e-14 68.2
MS.gene85254.t1 AT4G26650 42.308 78 44 1 39 116 16 92 4.11e-14 68.2
MS.gene85254.t1 AT4G26650 31.034 87 60 0 37 123 121 207 2.76e-11 60.1
MS.gene85254.t1 AT4G26650 42.308 78 44 1 39 116 13 89 4.18e-14 68.2
MS.gene85254.t1 AT4G26650 31.034 87 60 0 37 123 118 204 2.81e-11 60.1
MS.gene85254.t1 AT1G20880 38.961 77 47 0 38 114 24 100 4.51e-14 67.4
MS.gene85254.t1 AT1G20880 38.961 77 47 0 38 114 24 100 4.51e-14 67.4
MS.gene85254.t1 AT1G20880 38.961 77 47 0 38 114 24 100 4.51e-14 67.4
MS.gene85254.t1 AT4G13860 53.448 58 26 1 54 110 2 59 6.57e-14 62.8
MS.gene85254.t1 AT1G22910 38.961 77 47 0 38 114 13 89 6.72e-14 67.4
MS.gene85254.t1 AT5G47620 39.759 83 49 1 34 116 2 83 8.51e-14 67.0
MS.gene85254.t1 AT5G47620 33.333 78 52 0 36 113 104 181 2.64e-11 60.1
MS.gene85254.t1 AT5G47620 39.759 83 49 1 34 116 2 83 8.51e-14 67.0
MS.gene85254.t1 AT5G47620 33.333 78 52 0 36 113 104 181 2.64e-11 60.1
MS.gene85254.t1 AT5G47620 39.759 83 49 1 34 116 2 83 8.51e-14 67.0
MS.gene85254.t1 AT5G47620 33.333 78 52 0 36 113 104 181 2.64e-11 60.1
MS.gene85254.t1 AT1G78260 36.364 77 49 0 38 114 17 93 1.22e-13 66.2
MS.gene85254.t1 AT5G47620 53.704 54 25 0 34 87 2 55 1.52e-13 66.6
MS.gene85254.t1 AT5G47620 33.333 78 52 0 36 113 126 203 2.89e-11 60.1
MS.gene85254.t1 AT4G39260 38.983 59 36 0 39 97 7 65 1.56e-13 62.8
MS.gene85254.t1 AT1G78260 36.364 77 49 0 38 114 17 93 1.96e-13 65.5
MS.gene85254.t1 AT3G13224 36.667 90 56 1 30 118 92 181 2.25e-13 65.9
MS.gene85254.t1 AT3G13224 36.667 90 56 1 30 118 101 190 2.76e-13 65.5
MS.gene85254.t1 AT1G17640 34.694 98 61 2 36 131 155 251 3.45e-13 65.5
MS.gene85254.t1 AT1G17640 34.694 98 61 2 36 131 155 251 3.45e-13 65.5
MS.gene85254.t1 AT1G17640 34.694 98 61 2 36 131 155 251 3.45e-13 65.5
MS.gene85254.t1 AT3G54770 36.364 77 49 0 38 114 17 93 3.65e-13 64.7
MS.gene85254.t1 AT2G27330 31.579 95 64 1 37 130 20 114 3.72e-13 62.0
MS.gene85254.t1 AT3G13224 45.588 68 37 0 30 97 101 168 4.15e-13 63.9
MS.gene85254.t1 AT3G54770 36.364 77 49 0 38 114 17 93 4.29e-13 64.3
MS.gene85254.t1 AT2G21690 39.437 71 42 1 41 110 10 80 5.65e-13 61.6
MS.gene85254.t1 AT1G17370 44.000 75 41 1 40 113 141 215 9.09e-13 64.3
MS.gene85254.t1 AT1G17370 44.000 75 41 1 40 113 141 215 9.51e-13 64.3
MS.gene85254.t1 AT4G14300 40.506 79 46 1 39 117 7 84 1.05e-12 63.9
MS.gene85254.t1 AT4G14300 34.146 82 54 0 37 118 109 190 4.06e-12 62.4
MS.gene85254.t1 AT4G14300 40.506 79 46 1 39 117 7 84 1.05e-12 63.9
MS.gene85254.t1 AT4G14300 34.146 82 54 0 37 118 109 190 4.06e-12 62.4
MS.gene85254.t1 AT1G49760 43.590 78 43 1 37 113 44 121 1.17e-12 63.9
MS.gene85254.t1 AT1G49760 43.590 78 43 1 37 113 44 121 1.17e-12 63.9
MS.gene85254.t1 AT1G01080 37.975 79 49 0 32 110 207 285 1.30e-12 63.5
MS.gene85254.t1 AT1G01080 37.975 79 49 0 32 110 206 284 1.32e-12 63.5
MS.gene85254.t1 AT1G71800 35.443 79 49 2 40 116 11 89 1.49e-12 63.5
MS.gene85254.t1 AT2G33410 37.349 83 51 1 39 121 7 88 1.73e-12 63.5
MS.gene85254.t1 AT2G33410 30.702 114 73 1 11 118 77 190 3.62e-12 62.4
MS.gene85254.t1 AT1G54080 40.964 83 44 2 36 113 146 228 1.77e-12 63.5
MS.gene85254.t1 AT4G00830 34.783 92 57 2 26 116 106 195 2.35e-12 63.2
MS.gene85254.t1 AT4G00830 34.783 92 57 2 26 116 106 195 2.35e-12 63.2
MS.gene85254.t1 AT4G00830 36.250 80 50 1 38 116 116 195 2.42e-12 63.2
MS.gene85254.t1 AT4G00830 36.250 80 50 1 38 116 116 195 2.42e-12 63.2
MS.gene85254.t1 AT4G00830 36.250 80 50 1 38 116 116 195 2.42e-12 63.2
MS.gene85254.t1 AT2G37510 36.275 102 39 2 35 110 31 132 2.87e-12 60.8
MS.gene85254.t1 AT2G19380 33.333 84 56 0 33 116 403 486 3.07e-12 62.8
MS.gene85254.t1 AT5G11412 34.211 76 50 0 38 113 52 127 4.14e-12 60.5
MS.gene85254.t1 AT4G03110 36.471 85 53 1 38 121 349 433 4.31e-12 62.4
MS.gene85254.t1 AT5G53720 36.364 77 49 0 37 113 8 84 4.62e-12 58.5
MS.gene85254.t1 AT1G73530 33.333 81 53 1 37 116 76 156 4.91e-12 60.5
MS.gene85254.t1 AT4G20030 34.286 105 60 4 26 125 31 131 5.25e-12 59.7
MS.gene85254.t1 AT3G18610 39.535 86 49 2 37 122 383 465 7.52e-12 61.6
MS.gene85254.t1 AT5G19960 34.375 96 60 3 40 134 9 102 8.02e-12 61.2
MS.gene85254.t1 AT5G53680 34.615 78 49 1 38 113 13 90 1.09e-11 59.3
MS.gene85254.t1 AT3G18610 39.535 86 49 2 37 122 353 435 1.10e-11 61.2
MS.gene85254.t1 AT1G47490 37.234 94 57 2 40 131 199 292 1.35e-11 60.5
MS.gene85254.t1 AT3G18610 39.535 86 49 2 37 122 323 405 1.67e-11 60.8
MS.gene85254.t1 AT5G51300 36.585 82 51 1 33 113 475 556 1.83e-11 60.5
MS.gene85254.t1 AT5G51300 36.585 82 51 1 33 113 475 556 1.83e-11 60.5
MS.gene85254.t1 AT5G51300 36.585 82 51 1 33 113 475 556 1.83e-11 60.5
MS.gene85254.t1 AT1G47490 37.234 94 57 2 40 131 199 292 2.04e-11 60.5
MS.gene85254.t1 AT5G47620 33.766 77 51 0 37 113 45 121 2.10e-11 60.5
MS.gene85254.t1 AT3G15010 40.278 72 43 0 35 106 72 143 3.44e-11 59.7
MS.gene85254.t1 AT3G15010 40.278 72 43 0 35 106 72 143 3.44e-11 59.7
MS.gene85254.t1 AT5G54900 39.506 81 47 2 40 118 156 236 3.59e-11 59.7
MS.gene85254.t1 AT1G13690 37.333 75 46 1 40 113 15 89 3.92e-11 58.2
MS.gene85254.t1 AT3G10400 37.975 79 48 1 38 115 57 135 4.84e-11 58.9
MS.gene85254.t1 AT1G47500 35.789 95 59 2 40 132 201 295 7.68e-11 58.5
MS.gene85254.t1 AT1G47500 35.789 95 59 2 40 132 201 295 8.62e-11 58.5

Find 47 sgRNAs with CRISPR-Local

Find 49 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGATGGACAGGATTTAAA+TGG 0.332884 2.4:+4800367 MS.gene85254:CDS
ACTGGTAGATCAAGGGGATT+TGG 0.339610 2.4:+4800298 MS.gene85254:CDS
GGCTATGGCGGTGGCGGCGG+TGG 0.363886 2.4:+4800451 MS.gene85254:CDS
ATGGCTTTCTGTAACAAGAT+TGG 0.370753 2.4:+4800076 MS.gene85254:CDS
GGTGGCTATGGCGGTGGCGG+CGG 0.375272 2.4:+4800448 MS.gene85254:CDS
TGCAACTTCAGCACTCTCTA+TGG 0.384662 2.4:+4800348 MS.gene85254:CDS
GAGGAGGAGCTTCAGTGCTC+TGG 0.395274 2.4:-4800123 None:intergenic
CATAGGACACACGAATGTTT+CGG 0.398236 2.4:-4800390 None:intergenic
ATGGCGGTGGCGGCGGTGGT+TGG 0.428262 2.4:+4800455 MS.gene85254:CDS
TGTTGATGATCAGTCTCTTA+AGG 0.437494 2.4:+4800219 MS.gene85254:CDS
CCTCGTCCCGGAGGTGGCTA+TGG 0.454161 2.4:+4800436 MS.gene85254:CDS
TAGTTAAGCATGGATGAAAC+AGG 0.461015 2.4:-4800145 None:intergenic
GCCACCGCCATAGCCACCTC+CGG 0.471889 2.4:-4800443 None:intergenic
CCCGGAGGTGGCTATGGCGG+TGG 0.472916 2.4:+4800442 MS.gene85254:CDS
AGCACTCTCTATGGATGGAC+AGG 0.475981 2.4:+4800357 MS.gene85254:CDS
GGTGGACCTCGTCCCGGAGG+TGG 0.479282 2.4:+4800430 MS.gene85254:CDS
GGAGGTGGCTATGGCGGTGG+CGG 0.487801 2.4:+4800445 MS.gene85254:CDS
GATCATCAACATGGTAAGAA+AGG 0.505312 2.4:-4800207 None:intergenic
ATAGAGACACTGGTAGATCA+AGG 0.516941 2.4:+4800290 MS.gene85254:CDS
CAGGCTGGTGGACCTCGTCC+CGG 0.532193 2.4:+4800424 MS.gene85254:CDS
AGGAGGAGCTTCAGTGCTCT+GGG 0.532786 2.4:-4800122 None:intergenic
AAGGATGCATTTACAACCTA+CGG 0.532917 2.4:+4800238 MS.gene85254:CDS
CCATAGCCACCTCCGGGACG+AGG 0.541011 2.4:-4800436 None:intergenic
GGGTACCACCTTGCCTCAAG+AGG 0.543148 2.4:-4800102 None:intergenic
GTCCTATGCAAATGATAGAC+AGG 0.554294 2.4:+4800405 MS.gene85254:CDS
CCACCGCCATAGCCACCTCC+GGG 0.575331 2.4:-4800442 None:intergenic
ACTTCAGCACTCTCTATGGA+TGG 0.581897 2.4:+4800352 MS.gene85254:CDS
TATGCAAATGATAGACAGGC+TGG 0.581925 2.4:+4800409 MS.gene85254:CDS
TGCCTCAACCACTTCTCCGT+AGG 0.589946 2.4:-4800254 None:intergenic
TAGAGACACTGGTAGATCAA+GGG 0.596470 2.4:+4800291 MS.gene85254:CDS
CGTCCCGGAGGTGGCTATGG+CGG 0.598189 2.4:+4800439 MS.gene85254:CDS
AGAGACACTGGTAGATCAAG+GGG 0.601716 2.4:+4800292 MS.gene85254:CDS
ATTTACAACCTACGGAGAAG+TGG 0.607456 2.4:+4800246 MS.gene85254:CDS
GTTATCACTGATAGAGACAC+TGG 0.609665 2.4:+4800280 MS.gene85254:CDS
AGCATGGATGAAACAGGAGG+AGG 0.619418 2.4:-4800139 None:intergenic
AACCTACGGAGAAGTGGTTG+AGG 0.621999 2.4:+4800252 MS.gene85254:CDS
GTGGCGCAAGTAGTTAAGCA+TGG 0.622132 2.4:-4800155 None:intergenic
ATTGGAAACCTCTTGAGGCA+AGG 0.631105 2.4:+4800094 MS.gene85254:CDS
TGAAGTTGCAGACTCTTGAG+TGG 0.654691 2.4:-4800335 None:intergenic
AGCCTGTCTATCATTTGCAT+AGG 0.655393 2.4:-4800407 None:intergenic
ACAAGATTGGAAACCTCTTG+AGG 0.658250 2.4:+4800089 MS.gene85254:CDS
GCAAATGATAGACAGGCTGG+TGG 0.673979 2.4:+4800412 MS.gene85254:CDS
GCTGGTGGACCTCGTCCCGG+AGG 0.683775 2.4:+4800427 MS.gene85254:CDS
GGAAACCTCTTGAGGCAAGG+TGG 0.688707 2.4:+4800097 MS.gene85254:CDS
TAAGAGACTGATCATCAACA+TGG 0.702631 2.4:-4800216 None:intergenic
TTAAGCATGGATGAAACAGG+AGG 0.710474 2.4:-4800142 None:intergenic
AAAGCTTGCTTGAAGACATG+TGG 0.718559 2.4:-4800174 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
AAGGATGCATTTACAACCTA+CGG + chr2.4:4800238-4800257 MS.gene85254:CDS 35.0%
ATGGATGGACAGGATTTAAA+TGG + chr2.4:4800367-4800386 MS.gene85254:CDS 35.0%
ATGGCTTTCTGTAACAAGAT+TGG + chr2.4:4800076-4800095 MS.gene85254:CDS 35.0%
GATCATCAACATGGTAAGAA+AGG - chr2.4:4800210-4800229 None:intergenic 35.0%
TAAGAGACTGATCATCAACA+TGG - chr2.4:4800219-4800238 None:intergenic 35.0%
TAGTTAAGCATGGATGAAAC+AGG - chr2.4:4800148-4800167 None:intergenic 35.0%
! TCTTCAAGCAAGCTTTTCAT+TGG + chr2.4:4800181-4800200 MS.gene85254:CDS 35.0%
!! TGTTGATGATCAGTCTCTTA+AGG + chr2.4:4800219-4800238 MS.gene85254:CDS 35.0%
ACAAGATTGGAAACCTCTTG+AGG + chr2.4:4800089-4800108 MS.gene85254:CDS 40.0%
AGCCTGTCTATCATTTGCAT+AGG - chr2.4:4800410-4800429 None:intergenic 40.0%
ATAGAGACACTGGTAGATCA+AGG + chr2.4:4800290-4800309 MS.gene85254:CDS 40.0%
ATTTACAACCTACGGAGAAG+TGG + chr2.4:4800246-4800265 MS.gene85254:CDS 40.0%
CATAGGACACACGAATGTTT+CGG - chr2.4:4800393-4800412 None:intergenic 40.0%
GTCCTATGCAAATGATAGAC+AGG + chr2.4:4800405-4800424 MS.gene85254:CDS 40.0%
GTTATCACTGATAGAGACAC+TGG + chr2.4:4800280-4800299 MS.gene85254:CDS 40.0%
TAGAGACACTGGTAGATCAA+GGG + chr2.4:4800291-4800310 MS.gene85254:CDS 40.0%
TATGCAAATGATAGACAGGC+TGG + chr2.4:4800409-4800428 MS.gene85254:CDS 40.0%
TTAAGCATGGATGAAACAGG+AGG - chr2.4:4800145-4800164 None:intergenic 40.0%
! AAAGCTTGCTTGAAGACATG+TGG - chr2.4:4800177-4800196 None:intergenic 40.0%
! TCAAGCAAGCTTTTCATTGG+AGG + chr2.4:4800184-4800203 MS.gene85254:CDS 40.0%
ACTGGTAGATCAAGGGGATT+TGG + chr2.4:4800298-4800317 MS.gene85254:CDS 45.0%
ACTTCAGCACTCTCTATGGA+TGG + chr2.4:4800352-4800371 MS.gene85254:CDS 45.0%
AGAGACACTGGTAGATCAAG+GGG + chr2.4:4800292-4800311 MS.gene85254:CDS 45.0%
ATTGGAAACCTCTTGAGGCA+AGG + chr2.4:4800094-4800113 MS.gene85254:CDS 45.0%
TGAAGTTGCAGACTCTTGAG+TGG - chr2.4:4800338-4800357 None:intergenic 45.0%
TGCAACTTCAGCACTCTCTA+TGG + chr2.4:4800348-4800367 MS.gene85254:CDS 45.0%
AACCTACGGAGAAGTGGTTG+AGG + chr2.4:4800252-4800271 MS.gene85254:CDS 50.0%
AGCACTCTCTATGGATGGAC+AGG + chr2.4:4800357-4800376 MS.gene85254:CDS 50.0%
AGCATGGATGAAACAGGAGG+AGG - chr2.4:4800142-4800161 None:intergenic 50.0%
GCAAATGATAGACAGGCTGG+TGG + chr2.4:4800412-4800431 MS.gene85254:CDS 50.0%
GTGGCGCAAGTAGTTAAGCA+TGG - chr2.4:4800158-4800177 None:intergenic 50.0%
AGGAGGAGCTTCAGTGCTCT+GGG - chr2.4:4800125-4800144 None:intergenic 55.0%
GGAAACCTCTTGAGGCAAGG+TGG + chr2.4:4800097-4800116 MS.gene85254:CDS 55.0%
TGCCTCAACCACTTCTCCGT+AGG - chr2.4:4800257-4800276 None:intergenic 55.0%
GAGGAGGAGCTTCAGTGCTC+TGG - chr2.4:4800126-4800145 None:intergenic 60.0%
GGGTACCACCTTGCCTCAAG+AGG - chr2.4:4800105-4800124 None:intergenic 60.0%
CCACCGCCATAGCCACCTCC+GGG - chr2.4:4800445-4800464 None:intergenic 70.0%
CCATAGCCACCTCCGGGACG+AGG - chr2.4:4800439-4800458 None:intergenic 70.0%
CCTCGTCCCGGAGGTGGCTA+TGG + chr2.4:4800436-4800455 MS.gene85254:CDS 70.0%
CGTCCCGGAGGTGGCTATGG+CGG + chr2.4:4800439-4800458 MS.gene85254:CDS 70.0%
GCCACCGCCATAGCCACCTC+CGG - chr2.4:4800446-4800465 None:intergenic 70.0%
GGAGGTGGCTATGGCGGTGG+CGG + chr2.4:4800445-4800464 MS.gene85254:CDS 70.0%
! CAGGCTGGTGGACCTCGTCC+CGG + chr2.4:4800424-4800443 MS.gene85254:CDS 70.0%
CCCGGAGGTGGCTATGGCGG+TGG + chr2.4:4800442-4800461 MS.gene85254:CDS 75.0%
GGTGGACCTCGTCCCGGAGG+TGG + chr2.4:4800430-4800449 MS.gene85254:CDS 75.0%
! ATGGCGGTGGCGGCGGTGGT+TGG + chr2.4:4800455-4800474 MS.gene85254:CDS 75.0%
! GCTGGTGGACCTCGTCCCGG+AGG + chr2.4:4800427-4800446 MS.gene85254:CDS 75.0%
! GGTGGCTATGGCGGTGGCGG+CGG + chr2.4:4800448-4800467 MS.gene85254:CDS 75.0%
!! GGCTATGGCGGTGGCGGCGG+TGG + chr2.4:4800451-4800470 MS.gene85254:CDS 80.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 4800076 4800480 4800076 ID=MS.gene85254
chr2.4 mRNA 4800076 4800480 4800076 ID=MS.gene85254.t1;Parent=MS.gene85254
chr2.4 exon 4800076 4800480 4800076 ID=MS.gene85254.t1.exon1;Parent=MS.gene85254.t1
chr2.4 CDS 4800076 4800480 4800076 ID=cds.MS.gene85254.t1;Parent=MS.gene85254.t1
Gene Sequence

>MS.gene85254

ATGGCTTTCTGTAACAAGATTGGAAACCTCTTGAGGCAAGGTGGTACCCAGAGCACTGAAGCTCCTCCTCCTGTTTCATCCATGCTTAACTACTTGCGCCACATGTCTTCAAGCAAGCTTTTCATTGGAGGCCTTTCTTACCATGTTGATGATCAGTCTCTTAAGGATGCATTTACAACCTACGGAGAAGTGGTTGAGGCAAGAGTTATCACTGATAGAGACACTGGTAGATCAAGGGGATTTGGATTTGTCAACTTCACCACTCAAGAGTCTGCAACTTCAGCACTCTCTATGGATGGACAGGATTTAAATGGCCGAAACATTCGTGTGTCCTATGCAAATGATAGACAGGCTGGTGGACCTCGTCCCGGAGGTGGCTATGGCGGTGGCGGCGGTGGTTGGTGA
Protein sequence

>MS.gene85254.t1

MAFCNKIGNLLRQGGTQSTEAPPPVSSMLNYLRHMSSSKLFIGGLSYHVDDQSLKDAFTTYGEVVEARVITDRDTGRSRGFGFVNFTTQESATSALSMDGQDLNGRNIRVSYANDRQAGGPRPGGGYGGGGGGW