AlfalfaGEDB | MS.gene85278

M. sativa cultivar XinJiangDaYe / MS.gene85278

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20 PF13540.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85278.t1	XP_003597519.1	99.3	886	6	0	1	886	36	921	0.00E+00	1795.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85278.t1	Q75J39	64.6	893	292	9	1	886	26	901	0.0e+00	1194.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85278.t1	G7IHU8	99.3	886	6	0	1	886	36	921	0.0e+00	1795.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052013	MS.gene85278	0.822676	2.09E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85278.t1	MTR_2g098910	99.323	886	6	0	1	886	36	921	0.0	1820
MS.gene85278.t1	MTR_4g067230	75.000	896	197	14	1	886	36	914	0.0	1334
MS.gene85278.t1	MTR_1g064560	32.306	811	424	30	1	762	26	760	3.34e-113	364
MS.gene85278.t1	MTR_3g464080	32.310	814	434	27	13	769	35	788	9.13e-108	351
MS.gene85278.t1	MTR_3g070800	31.746	819	432	27	2	769	28	770	1.53e-98	326
MS.gene85278.t1	MTR_4g035180	49.536	323	138	6	473	778	418	732	3.92e-87	294
MS.gene85278.t1	MTR_5g082630	31.266	790	436	30	46	766	35	786	2.46e-85	290
MS.gene85278.t1	MTR_5g082630	26.174	298	178	16	10	291	39	310	1.18e-14	79.0
MS.gene85278.t1	MTR_2g084120	38.058	381	206	8	392	760	8	370	4.42e-75	251
MS.gene85278.t1	MTR_1g080740	44.218	294	159	3	475	766	510	800	3.19e-74	261

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85278.t1	AT3G59420	67.377	892	256	10	1	886	33	895	0.0	1210
MS.gene85278.t1	AT2G39180	30.760	803	449	23	3	761	28	767	8.75e-107	347
MS.gene85278.t1	AT3G09780	32.226	813	422	29	4	762	30	767	1.33e-103	339
MS.gene85278.t1	AT5G47850	33.662	710	377	29	120	771	67	740	4.21e-86	291
MS.gene85278.t1	AT3G55950	47.634	317	145	7	471	766	480	796	7.93e-77	267
MS.gene85278.t1	AT3G55950	24.921	317	208	13	2	314	35	325	2.45e-13	74.7
MS.gene85278.t1	AT3G58690	44.710	293	155	4	473	760	73	363	8.74e-76	253
MS.gene85278.t1	AT3G04690	45.270	296	155	3	473	766	503	793	3.32e-75	263
MS.gene85278.t1	AT5G28680	44.595	296	157	3	473	766	507	797	5.58e-75	263
MS.gene85278.t1	AT5G28680	44.595	296	157	3	473	766	507	797	5.58e-75	263

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Find 198 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGGTTGATCAATACA+AGG	0.614511	2.4:+5105994	None:intergenic
AAACATCTGACTTTGTTGTG+AGG	0.678035	2.4:+5106298	None:intergenic
AAAGTGTTTGACATTGCAGC+TGG	0.555497	2.4:-5107512	MS.gene85278:CDS
AACAGTTGTTGCTGTTAAAA+GGG	0.462565	2.4:-5106778	MS.gene85278:CDS
AACGGATAGTAGCTCCCCAC+TGG	0.539704	2.4:-5106379	MS.gene85278:CDS
AACTATGGTAATGTTGTTGG+TGG	0.578343	2.4:-5105751	MS.gene85278:CDS
AAGAAGGTAACATTGTTCAA+TGG	0.551518	2.4:-5106212	MS.gene85278:CDS
AAGAGCTTTAGCAATGTTAA+TGG	0.285766	2.4:-5106022	MS.gene85278:CDS
AAGTAGTAGCCATATAGAAA+TGG	0.380949	2.4:-5108098	MS.gene85278:CDS
AAGTCAGATGTTTATAGCTT+TGG	0.382637	2.4:-5106288	MS.gene85278:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAAGGTAACATTGTTCAA+TGG	-	chr2.4:5107758-5107777	MS.gene85278:CDS	30.0%
AAGTAGTAGCCATATAGAAA+TGG	-	chr2.4:5105872-5105891	MS.gene85278:CDS	30.0%
AAGTCAGATGTTTATAGCTT+TGG	-	chr2.4:5107682-5107701	MS.gene85278:CDS	30.0%
ACAAAGAACTATGTGTTTGA+TGG	-	chr2.4:5106032-5106051	MS.gene85278:CDS	30.0%
ACTACTTGTATATGAGTACA+TGG	-	chr2.4:5107339-5107358	MS.gene85278:CDS	30.0%
AGGTTAGTACTCAAGTTATT+AGG	-	chr2.4:5106138-5106157	MS.gene85278:CDS	30.0%
AGTAGTAGCCATATAGAAAT+GGG	-	chr2.4:5105873-5105892	MS.gene85278:CDS	30.0%
AGTTGAAAGAGCAATTAGAT+TGG	-	chr2.4:5107404-5107423	MS.gene85278:CDS	30.0%
ATGATCATGGAGTTATTTGT+TGG	-	chr2.4:5106393-5106412	MS.gene85278:CDS	30.0%
ATTGATATGCAATACGAAGA+AGG	-	chr2.4:5107742-5107761	MS.gene85278:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	5105666	5108326	5105666	ID=MS.gene85278
chr2.4	mRNA	5105666	5108326	5105666	ID=MS.gene85278.t1;Parent=MS.gene85278
chr2.4	exon	5105666	5108326	5105666	ID=MS.gene85278.t1.exon1;Parent=MS.gene85278.t1
chr2.4	CDS	5105666	5108326	5105666	ID=cds.MS.gene85278.t1;Parent=MS.gene85278.t1

Gene Sequence

>MS.gene85278

ATGTCATCAATTGCTGTCTCTTATGGAGATAAAGGTTCTGCTTTCTGTGGCTTGAAATCAGATGGATCTCACACTGTGACATGTTATGGAATGAACTCGGCCATAGTTTATGGAACACCATCTCAGTTTCCATTCCTTGGTCTAACTTCTGGTGATGGTTTTGTTTGTGGACTTTTAATGAGTTCAAATCAACCATATTGTTGGGGAAGTAGTAGCCATATAGAAATGGGTGTGCCACAACCTATGTTTAAGGATGCTCAGTACTTAGAAATCAGTGCCGGCGATTATCATGTTTGTGGATTGAGGAAGCCTTTGACAGGAAGACACAGGAACTTTTCTTTTGTTGATTGTTGGGGATACAATATGACAAAGAACTATGTGTTTGATGGACAGATTCAATCGATTTCGGCAGGTTCTGAGTTCAATTGTGGACTTTTTTCGCAGAATCGGACGGTATTTTGTTGGGGTGATGAGGTTAGTACTCAAGTTATTAGGTTGATTCCACAAGGAATGAGGTTTCAGAAGGTGTCTTGTGGAGGGTATCATGTATGTGGAATCTTGGAAGGTGTGAATTCTAGAACTGTTTGTTGGGGGAGAAGTTTGGATTTGGAGGAAGAAATTTCATTGATACCTAATCAAGGACAAGGTGGTAATGTTGAGTTGGCTCCAAATGATCCTATGCTTTCTGTTGTTGGAGGAAAGTTTCATGCTTGTGGCATTAAGAGCTATGATCATGGAGTTATTTGTTGGGGGTTAAATTTGAAAACAAGCACAAAAGTTCCTAAAGGGATTAAAGTGTTTGACATTGCAGCTGGTGATTATTTTACCTGTGGAATTCTTGTTGCAAAATCTCTTGAATCTATTTGTTGGGGTGTTGGATTTCCAACTTCTCTACCTTTGGCTGTTTCACCGAGAACAAGAAAGTGTTTGTCTGCACCTTGTCCTCCAAGTTACTATGAAATTGAAAAGGATCAACAAAATGGTCTAATTTGTCAAGATCCAAATTCTCACCTTTGTGTTCCATGCAGTGGTGTTTGTCCTGATGAAATGTATCAGAAAAGTGGTTGCAATTTGAAATCTGATATACTATGCGAATATAATTGTTCTGTTTGTTCTTCACCTGAATGCTTCTCAAACTGTTCCTCCTCTTCTTCCAATGCTGCTAACGGTGGGAAGAAAAATGAAAGATTTTGGTCTATGCAGTTGATAGTTATTGTTGGTGAGATAGTATTTGCTGTTTTTATAGTCAGTGCTGTCTCTATTACCGCGGTTATGTATGTTCGCTACAAGCTAAGAGATTGTGAGTGTTCAACAAGACCGTTAAACTCGATGAAGAGACTCAATGTTAGTTCTTCGGTTCAAAAGGATAACGGTAAGGTTCGACCGGACGCGGAGGAGATCAAGATAAGAAGGGCTCAGAAGTTCTCCTATGAGGAACTTGAAAATGCAACCTGTGGATTCAAAGAAGAATCAATTGTTGGGAAAGGAAGTTTTTCATGTGTGTTCAAAGGTGTTCTCAAAGATGGAACAGTTGTTGCTGTTAAAAGGGCTATTATGTCTCCAAACATGCAGAAAAATTCCAAAGAGTTTCACACAGAACTTGACTTGTTATCTAGGTTGAACCATGCTCATTTGCTCAACCTATTAGGCTATTGTGAAGAAGGAGGTGAAAGACTACTTGTATATGAGTACATGGCACATGGATCATTGCATCAACACCTTCATGGCAAAAACAAAGAGTTGAAAGAGCAATTAGATTGGATCAGAAGGGTAACAATTGCGGTCCAAGCAGCTCGAGGAATCGAATATCTCCACGGCTATGCATGCCCACCGGTGATTCATAGAGACATCAAATCTTCAAACATACTCATTGATGAAGAACACAATGCAAGAGTTTCGGATTTCGGTTTGTCATTACTAGGTCCAACGGATAGTAGCTCCCCACTGGCCGAGTTACCGGCCGGAACACTTGGTTATCTTGATCCTGAATACTATAGACTTCACTACCTCACAACAAAGTCAGATGTTTATAGCTTTGGTGTTCTACTATTAGAAATTCTAAGTGGTAGAAAAGCTATTGATATGCAATACGAAGAAGGTAACATTGTTCAATGGTCAGTTCCATTAATAAAATCGGGTGATATAGCTTCGATTTTAGACCCTTGTTTGAAACCACCTTCGGATATTGAAGCATTGAGAAGAATAGCAAATGTTGCTTGTAAATGTGTGAGAATGAGAGGTAAAGATAGGCCTTCAATGGACAAAGTAACAACAAGTTTGGAAAGAGCTTTAGCAATGTTAATGGGAAGTCCTTGTATTGATCAACCAATTTTGCCAACTGAGGTTGTTTTAGGAAGTAATAGAATGCATAAGAAAACATCTCAAAGGTCTTCAAATCGGTCGGCTTCAGAAATCGATGTAGTCGAAGGTGAAGATCAAAGGTTTGAGTTTAGAGCACCTTCTTGGATAACTTTTCCAAGTGTAACTTCTTCTCAAAGAAGAAAGTCTTCAGGGTCAGAAGGTGAAGTTGAAGTGAAGATTGTTGAAGGAAGAAACTATGGTAATGTTGTTGGTGGTGGAGGTGATGTTTTGAGAAGTCTTGAGGAAGAAATTGGTCCTGCTTCTCCTCAAGAGAGACTCTTCTTGCAACACAACTTCTAA

Protein sequence

>MS.gene85278.t1

MSSIAVSYGDKGSAFCGLKSDGSHTVTCYGMNSAIVYGTPSQFPFLGLTSGDGFVCGLLMSSNQPYCWGSSSHIEMGVPQPMFKDAQYLEISAGDYHVCGLRKPLTGRHRNFSFVDCWGYNMTKNYVFDGQIQSISAGSEFNCGLFSQNRTVFCWGDEVSTQVIRLIPQGMRFQKVSCGGYHVCGILEGVNSRTVCWGRSLDLEEEISLIPNQGQGGNVELAPNDPMLSVVGGKFHACGIKSYDHGVICWGLNLKTSTKVPKGIKVFDIAAGDYFTCGILVAKSLESICWGVGFPTSLPLAVSPRTRKCLSAPCPPSYYEIEKDQQNGLICQDPNSHLCVPCSGVCPDEMYQKSGCNLKSDILCEYNCSVCSSPECFSNCSSSSSNAANGGKKNERFWSMQLIVIVGEIVFAVFIVSAVSITAVMYVRYKLRDCECSTRPLNSMKRLNVSSSVQKDNGKVRPDAEEIKIRRAQKFSYEELENATCGFKEESIVGKGSFSCVFKGVLKDGTVVAVKRAIMSPNMQKNSKEFHTELDLLSRLNHAHLLNLLGYCEEGGERLLVYEYMAHGSLHQHLHGKNKELKEQLDWIRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVSDFGLSLLGPTDSSSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMQYEEGNIVQWSVPLIKSGDIASILDPCLKPPSDIEALRRIANVACKCVRMRGKDRPSMDKVTTSLERALAMLMGSPCIDQPILPTEVVLGSNRMHKKTSQRSSNRSASEIDVVEGEDQRFEFRAPSWITFPSVTSSQRRKSSGSEGEVEVKIVEGRNYGNVVGGGGDVLRSLEEEIGPASPQERLFLQHNF