AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene85289

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85289.t1 AT3G17450 56.568 845 335 12 1 829 1 829 0.0 970
MS.gene85289.t1 AT3G17450 56.568 845 335 12 1 829 1 829 0.0 970
MS.gene85289.t1 AT4G15020 33.381 701 419 16 114 791 1 676 2.04e-106 347
MS.gene85289.t1 AT4G15020 33.381 701 419 16 114 791 1 676 2.04e-106 347
MS.gene85289.t1 AT3G22220 31.285 716 462 16 114 819 1 696 1.90e-103 338
MS.gene85289.t1 AT3G22220 31.285 716 462 16 114 819 1 696 1.90e-103 338
MS.gene85289.t1 AT3G22220 31.285 716 462 16 114 819 1 696 1.90e-103 338
MS.gene85289.t1 AT3G22220 31.285 716 462 16 114 819 1 696 1.90e-103 338
MS.gene85289.t1 AT1G79740 29.550 511 346 6 309 819 111 607 2.56e-77 265
MS.gene85289.t1 AT1G79740 29.550 511 346 6 309 819 111 607 2.56e-77 265
MS.gene85289.t1 AT1G79740 29.303 488 331 6 332 819 1 474 4.49e-74 253
MS.gene85289.t1 AT1G79740 29.303 488 331 6 332 819 1 474 4.49e-74 253
MS.gene85289.t1 AT3G13020 26.426 666 410 18 137 793 10 604 4.32e-69 241
MS.gene85289.t1 AT3G13030 27.824 478 329 8 319 790 62 529 8.17e-59 211
MS.gene85289.t1 AT3G13030 27.824 478 329 8 319 790 62 529 8.17e-59 211
MS.gene85289.t1 AT3G13030 27.824 478 329 8 319 790 62 529 8.17e-59 211
MS.gene85289.t1 AT3G13030 27.824 478 329 8 319 790 62 529 8.17e-59 211
MS.gene85289.t1 AT3G13010 28.398 493 324 12 310 793 99 571 2.65e-54 199
MS.gene85289.t1 AT3G13030 28.092 477 296 10 319 790 62 496 6.57e-51 187
MS.gene85289.t1 AT5G33406 28.530 347 235 4 511 856 1 335 1.24e-44 169
MS.gene85289.t1 AT1G43260 33.333 225 148 2 318 541 47 270 1.33e-37 143
MS.gene85289.t1 AT5G31412 37.879 132 80 1 353 484 110 239 9.18e-21 96.7
MS.gene85289.t1 AT1G36095 31.176 170 116 1 412 581 131 299 3.05e-20 92.8

Find 176 sgRNAs with CRISPR-Local

Find 288 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCTTCTCAACGCTGGTTC+TGG 0.154626 2.4:+45204093 None:intergenic
CAGCATTTAGCACGAGTTTC+TGG 0.196448 2.4:-45204750 MS.gene85289:CDS
TTCAGCAAGGTAATTCTTAA+TGG 0.225009 2.4:+45203798 None:intergenic
AGATACAGGAAAGACCTTTA+AGG 0.228826 2.4:-45204136 MS.gene85289:CDS
ATTAGAGGACATTCCCTTAA+AGG 0.245359 2.4:+45204122 None:intergenic
CCATCCAGCCAACTTATTTC+AGG 0.246683 2.4:-45203847 MS.gene85289:CDS
ACAACATTTGGCTAGGATTC+CGG 0.260414 2.4:-45204385 MS.gene85289:CDS
AACATATTTATTTAAGCTTT+TGG 0.267928 2.4:-45203623 MS.gene85289:CDS
GAATTACCTTGCTGAATATA+AGG 0.282596 2.4:-45203791 MS.gene85289:CDS
CATTAACTTTCTTCTGTGAT+AGG 0.284701 2.4:+45202182 None:intergenic
CTCTTTCCCCTGGCTTGAAC+TGG 0.307893 2.4:+45203092 None:intergenic
CAACATTTGGCTAGGATTCC+GGG 0.313749 2.4:-45204384 MS.gene85289:CDS
AACTAATATACAATCAAATA+TGG 0.313840 2.4:-45203278 MS.gene85289:CDS
TGCTATCTATTGTATTAATC+AGG 0.315796 2.4:-45203367 MS.gene85289:CDS
CACGGAAATATGAGCCATTC+TGG 0.321607 2.4:-45202888 MS.gene85289:CDS
ATCTTCTCAACGCTGGTTCT+GGG 0.327767 2.4:+45204094 None:intergenic
TTGCTGAATATAAGGCTTCC+TGG 0.335078 2.4:-45203783 MS.gene85289:CDS
TAATAGATTTAAACAACATT+TGG 0.335959 2.4:-45204397 MS.gene85289:CDS
GAATGTTTCTTTCAAACAAA+TGG 0.339612 2.4:-45203131 MS.gene85289:CDS
AGATGACTTTGGAACTGAAT+TGG 0.347315 2.4:-45202479 MS.gene85289:CDS
CTGGAATTGGCTGGTCAATA+TGG 0.351924 2.4:-45203886 MS.gene85289:CDS
TTCCCAGCAGCTTTATAGTT+AGG 0.352395 2.4:+45203432 None:intergenic
TGCTACATTGCAGAATTTGT+TGG 0.356863 2.4:-45203175 MS.gene85289:CDS
GATACAGGAAAGACCTTTAA+GGG 0.362013 2.4:-45204135 MS.gene85289:CDS
AAGCTTTGATTGATATTGAT+AGG 0.363049 2.4:-45204170 MS.gene85289:CDS
AATCACTGGTTGTTCGATAA+TGG 0.364280 2.4:-45203758 MS.gene85289:CDS
GAGAATGCCAAGTAAGAAAA+AGG 0.364495 2.4:-45202126 MS.gene85289:CDS
AAACAAAATCTTGACGATAT+CGG 0.369198 2.4:+45202788 None:intergenic
TCATCTTCATTATCAGACTT+TGG 0.375661 2.4:+45204237 None:intergenic
CTTGCAATCAAATCTATTCA+TGG 0.376674 2.4:-45202919 MS.gene85289:CDS
AAAGGCGAAGGAATTTGTTC+TGG 0.381581 2.4:-45203398 MS.gene85289:CDS
TTAACTCCTCTTCGGTCCTT+AGG 0.382982 2.4:-45204516 MS.gene85289:CDS
GACAAAGTAGTGGAAGAAAT+AGG 0.386856 2.4:-45203601 MS.gene85289:CDS
TTCCCATGAGCTGGTTACTA+TGG 0.389104 2.4:-45201011 MS.gene85289:CDS
GTTGATCCTGGTTGGGATCA+TGG 0.396999 2.4:-45204855 MS.gene85289:CDS
GCAACACCGTGTTCCCATCC+TGG 0.400971 2.4:+45204483 None:intergenic
AGGATTTGTTGATCCTGGTT+GGG 0.401216 2.4:-45204862 MS.gene85289:CDS
CAGGATTTGTTGATCCTGGT+TGG 0.401261 2.4:-45204863 MS.gene85289:CDS
TGCATCTTCAACTACATTAG+TGG 0.404393 2.4:+45203645 None:intergenic
TTATCAGACTTTGGATAGAA+AGG 0.411222 2.4:+45204246 None:intergenic
TCCACAGGATTTGTTGATCC+TGG 0.414673 2.4:-45204867 MS.gene85289:CDS
TGGTTCTGGGCTAGTATTAG+AGG 0.417393 2.4:+45204107 None:intergenic
CATAAAATGCTGGAATTGGC+TGG 0.424079 2.4:-45203895 MS.gene85289:CDS
CTGAAATAAGTTGGCTGGAT+GGG 0.430385 2.4:+45203848 None:intergenic
AATTCAGCTCAAGATGACTT+TGG 0.436462 2.4:-45202490 MS.gene85289:CDS
ACTCCTAACTATAAAGCTGC+TGG 0.439048 2.4:-45203435 MS.gene85289:CDS
ATGTATATAACGACTTGTAC+AGG 0.442939 2.4:-45202948 MS.gene85289:CDS
TACAAGTCGTTATATACATA+TGG 0.444904 2.4:+45202952 None:intergenic
GAAGCACACTGGGTGCCAGC+TGG 0.445938 2.4:+45203204 None:intergenic
TGTAGAAGAGTGCATGGAAA+AGG 0.446118 2.4:-45203316 MS.gene85289:CDS
TCATCTAGATCAACACCAAA+AGG 0.447915 2.4:+45201094 None:intergenic
CTGGCTTGAACTGGAGAACC+TGG 0.450018 2.4:+45203101 None:intergenic
TTCCTTGCGTAATTTCTTAG+TGG 0.450982 2.4:+45203990 None:intergenic
AAGACGATGAAGAGCAAGTT+GGG 0.453437 2.4:-45204590 MS.gene85289:CDS
AGGAGATACTCTAAAGATAC+AGG 0.457549 2.4:-45204150 MS.gene85289:CDS
CTGTAAATTTAACTCCTCTT+CGG 0.460622 2.4:-45204524 MS.gene85289:CDS
ACAAATCCTGTGGAGCGTAT+TGG 0.462386 2.4:+45204876 None:intergenic
CAAACAAATGGATGTCATCC+AGG 0.463821 2.4:-45203119 MS.gene85289:CDS
CAGGTTCTCCAGTTCAAGCC+AGG 0.466832 2.4:-45203100 MS.gene85289:CDS
GCAGATCATGCTAACATTGA+TGG 0.469084 2.4:-45200962 MS.gene85289:CDS
TTACAAGGTGCTACCTCTCC+CGG 0.469285 2.4:+45204366 None:intergenic
GTTCGATAATGGCTGATAGT+TGG 0.469340 2.4:-45203747 MS.gene85289:CDS
AGATGATGAGTATGAGCAGC+AGG 0.476427 2.4:-45204220 MS.gene85289:CDS
TTTCTTGTTTCATCTCCTCA+TGG 0.477086 2.4:-45203694 MS.gene85289:CDS
AAGCAAAGGAAAGCAATTGA+TGG 0.478129 2.4:-45204562 MS.gene85289:CDS
ATGGGAACACGGTGTTGCTC+AGG 0.479669 2.4:-45204478 MS.gene85289:CDS
TACTGTGAGAAAGTTGTTAG+TGG 0.482355 2.4:-45204426 MS.gene85289:CDS
TTACCTTACTAGCTGCTTGG+TGG 0.483570 2.4:-45202336 MS.gene85289:intron
TCCTTGCGTAATTTCTTAGT+GGG 0.485270 2.4:+45203991 None:intergenic
CAATTGATGGATGGCAGGAA+TGG 0.486024 2.4:-45204549 MS.gene85289:CDS
TTTGGCTAGGATTCCGGGAG+AGG 0.486181 2.4:-45204379 MS.gene85289:CDS
TGATAGTTGGAGAGATGCAC+AGG 0.488405 2.4:-45203734 MS.gene85289:CDS
TTGGCAATTAGCACAAGAAC+AGG 0.492641 2.4:-45202460 MS.gene85289:CDS
CATATTGCAAGTGTTTCAAA+AGG 0.493903 2.4:-45203001 MS.gene85289:CDS
TGGATCTGAAAGGCATCTAA+AGG 0.499713 2.4:-45201035 MS.gene85289:CDS
CTGTCTATCACCTTCCAGAA+TGG 0.505410 2.4:+45202874 None:intergenic
GCGACCTGAAATAAGTTGGC+TGG 0.505631 2.4:+45203843 None:intergenic
TGCTGAATATAAGGCTTCCT+GGG 0.512753 2.4:-45203782 MS.gene85289:CDS
AAATAAAAGAGAATATGAAA+TGG 0.513526 2.4:-45204317 MS.gene85289:CDS
TGAAGTAACGTACTGTGAAA+AGG 0.514321 2.4:-45204727 MS.gene85289:CDS
TACTGTGGGAAAATTGTTAG+TGG 0.515444 2.4:-45204792 MS.gene85289:CDS
CTCCTAACTATAAAGCTGCT+GGG 0.516115 2.4:-45203434 MS.gene85289:CDS
AGGTGAAGAAAATGTAGTGC+AGG 0.518522 2.4:-45203581 MS.gene85289:intron
AAGTAAGCAGCCAAGTAAAG+AGG 0.521409 2.4:+45202826 None:intergenic
GGCATCAGATCCTTAGCCTC+AGG 0.521534 2.4:+45204267 None:intergenic
GGATCTGAAAGGCATCTAAA+GGG 0.523160 2.4:-45201034 MS.gene85289:CDS
GATTCAATAGACTATGATGA+TGG 0.524240 2.4:-45201055 MS.gene85289:CDS
CAGTTCAAGCCAGGGGAAAG+AGG 0.525879 2.4:-45203091 MS.gene85289:CDS
GAAAGCAATTGATGGATGGC+AGG 0.527166 2.4:-45204554 MS.gene85289:CDS
TAGGATATGTTGACCCAGGA+TGG 0.527257 2.4:-45204497 MS.gene85289:CDS
CAGCCATAGTAACCAGCTCA+TGG 0.528043 2.4:+45201008 None:intergenic
GTCTGAATGAATGCATTGTT+CGG 0.528690 2.4:-45202655 MS.gene85289:CDS
ACATAGGCAACCTGAGGCTA+AGG 0.529668 2.4:-45204277 MS.gene85289:CDS
ACAGAGTCTGCAGCTTGTAA+AGG 0.530270 2.4:+45203925 None:intergenic
AAGGCTTCCTGGGCAATCAC+TGG 0.530608 2.4:-45203772 MS.gene85289:CDS
CATCTAGATCAACACCAAAA+GGG 0.531085 2.4:+45201095 None:intergenic
CATTCTGGAAGGTGATAGAC+AGG 0.532154 2.4:-45202873 MS.gene85289:CDS
AACGTACTGTGAAAAGGCTC+CGG 0.533911 2.4:-45204721 MS.gene85289:CDS
CAGATCCGACTCATCGTCAC+TGG 0.533981 2.4:+45200937 None:intergenic
CTGGGAAAATGCTTGAAGAA+AGG 0.534955 2.4:-45203416 MS.gene85289:CDS
CAACACCGTGTTCCCATCCT+GGG 0.537167 2.4:+45204484 None:intergenic
GATTTAAACAACATTTGGCT+AGG 0.537741 2.4:-45204392 MS.gene85289:CDS
GCTTTAGAAGCTCATTCCCA+TGG 0.538107 2.4:+45203226 None:intergenic
AGTTTGAAGATTCTGATTCG+TGG 0.538872 2.4:+45204041 None:intergenic
GTTTGAAGATTCTGATTCGT+GGG 0.546034 2.4:+45204042 None:intergenic
ATGAAAAGTGAGTTTACCCA+TGG 0.546037 2.4:-45203243 MS.gene85289:CDS
AAAAGCGACCTGAAATAAGT+TGG 0.546689 2.4:+45203839 None:intergenic
CAAGTTGGGTGTAGAAGCAA+AGG 0.546966 2.4:-45204576 MS.gene85289:CDS
TCCTGGGTCAACATATCCTA+AGG 0.548882 2.4:+45204500 None:intergenic
AATATGAAATGGCATCGCAC+TGG 0.551192 2.4:-45204306 MS.gene85289:CDS
ACAACATGGAATAAGTTGCT+TGG 0.551673 2.4:-45202311 MS.gene85289:CDS
AAGAGCACTTACTTGCTGAC+TGG 0.555352 2.4:-45202063 MS.gene85289:CDS
TAGATGTGTAGAAGAGTGCA+TGG 0.555568 2.4:-45203322 MS.gene85289:CDS
TCTAAAGGGTTCCCATGAGC+TGG 0.557230 2.4:-45201020 MS.gene85289:CDS
GTAGAAGAGTGCATGGAAAA+GGG 0.564298 2.4:-45203315 MS.gene85289:CDS
TGGTCAATATGGACAAGGAC+TGG 0.565647 2.4:-45203875 MS.gene85289:CDS
ACCACTGCACAAAGCTCTGA+TGG 0.565731 2.4:-45202031 MS.gene85289:CDS
CCTGAAATAAGTTGGCTGGA+TGG 0.567055 2.4:+45203847 None:intergenic
CTATTCATGGCGATGATGCA+CGG 0.567695 2.4:-45202906 MS.gene85289:CDS
ATGGCTCCAATACGCTCCAC+AGG 0.568838 2.4:-45204882 MS.gene85289:CDS
GAAGACGATGAAGAGCAAGT+TGG 0.574856 2.4:-45204591 MS.gene85289:CDS
CTTTAGAAGCTCATTCCCAT+GGG 0.577632 2.4:+45203227 None:intergenic
AATCTTGATCTTCTCAACGC+TGG 0.579689 2.4:+45204087 None:intergenic
AATGAGCTTCTAAAGCCAGC+TGG 0.582059 2.4:-45203219 MS.gene85289:CDS
GGAAGAAAATGCAGTATGTG+AGG 0.583624 2.4:-45203038 MS.gene85289:CDS
GAGCTGGTTACTATGGCTGA+TGG 0.584016 2.4:-45201004 MS.gene85289:CDS
TGTGGGAAAATTGTTAGTGG+TGG 0.588256 2.4:-45204789 MS.gene85289:CDS
AAAATGAAGGAAAATCTGGA+AGG 0.590836 2.4:-45204684 MS.gene85289:CDS
AGCAAAGCTAGAAGCACACT+GGG 0.592642 2.4:+45203194 None:intergenic
AGCCATAGTAACCAGCTCAT+GGG 0.593805 2.4:+45201009 None:intergenic
AGGTTAGATGCAATTACTGT+GGG 0.594300 2.4:-45204806 MS.gene85289:CDS
AAACAACTAAAAGTTAAGAC+AGG 0.594917 2.4:-45204015 MS.gene85289:CDS
ACTATGGCTGATGGAGCAGT+AGG 0.594939 2.4:-45200995 MS.gene85289:CDS
TAGCAAAGCTAGAAGCACAC+TGG 0.595235 2.4:+45203193 None:intergenic
GCCATCAGAGCTTTGTGCAG+TGG 0.595565 2.4:+45202030 None:intergenic
TCTTGAGCTGAATTATAATG+AGG 0.598079 2.4:+45202499 None:intergenic
AGGATATGTTGACCCAGGAT+GGG 0.598950 2.4:-45204496 MS.gene85289:CDS
AAAGGAAAGCAATTGATGGA+TGG 0.603413 2.4:-45204558 MS.gene85289:CDS
AGGTTCTCCAGTTCAAGCCA+GGG 0.607330 2.4:-45203099 MS.gene85289:CDS
ACAAAGCTCTGATGGCGACA+AGG 0.615040 2.4:-45202023 MS.gene85289:intron
TCTTGACGATATCGGTATGA+CGG 0.616642 2.4:+45202796 None:intergenic
AAATGAAGGAAAATCTGGAA+GGG 0.618504 2.4:-45204683 MS.gene85289:CDS
AAGGTTAGATGCAATTACTG+TGG 0.618593 2.4:-45204807 MS.gene85289:CDS
TCCTTAGGATATGTTGACCC+AGG 0.619093 2.4:-45204501 MS.gene85289:CDS
TTGTAGAACATTCTCAGCAG+AGG 0.619249 2.4:+45202084 None:intergenic
GCTGCTTGGTGGCAACAACA+TGG 0.620763 2.4:-45202325 MS.gene85289:CDS
GAAATATGAGCCATTCTGGA+AGG 0.621062 2.4:-45202884 MS.gene85289:CDS
ACAAGAACAGGTCTTGAACC+AGG 0.622503 2.4:-45202448 MS.gene85289:intron
CGAACAACCAGTGATTGCCC+AGG 0.630440 2.4:+45203765 None:intergenic
AAATGCTTGAAGAAAGGCGA+AGG 0.636138 2.4:-45203410 MS.gene85289:CDS
GTTGGAGAGATGCACAGGGT+AGG 0.638423 2.4:-45203729 MS.gene85289:CDS
ACCAGGATCAACAAATCCTG+TGG 0.638687 2.4:+45204866 None:intergenic
GTGGGAAAATTGTTAGTGGT+GGG 0.638782 2.4:-45204788 MS.gene85289:CDS
TGTGAGAAAGTTGTTAGTGG+CGG 0.639509 2.4:-45204423 MS.gene85289:CDS
GTGTTTCAAAAGGTGTCTAG+TGG 0.640607 2.4:-45202991 MS.gene85289:CDS
GTTGACCCAGGATGGGAACA+CGG 0.644392 2.4:-45204489 MS.gene85289:CDS
TGTCTGACTTAATATGCGAA+CGG 0.644471 2.4:+45202273 None:intergenic
TGTATATAACGACTTGTACA+GGG 0.644698 2.4:-45202947 MS.gene85289:CDS
GCAATGCCATGATCCCAACC+AGG 0.647244 2.4:+45204849 None:intergenic
AGGAAGCCTTATATTCAGCA+AGG 0.649639 2.4:+45203785 None:intergenic
ATCGCACTGGAAAGAGACAT+AGG 0.651079 2.4:-45204293 MS.gene85289:CDS
ACCCACTAAGAAATTACGCA+AGG 0.652287 2.4:-45203992 MS.gene85289:CDS
GTACTGTGAAAAGGCTCCGG+AGG 0.657061 2.4:-45204718 MS.gene85289:CDS
TGAAAAGTGAGTTTACCCAT+GGG 0.658394 2.4:-45203242 MS.gene85289:CDS
TGGTGCCAGTGACGATGAGT+CGG 0.666465 2.4:-45200942 MS.gene85289:CDS
TACTTTGCATCATATGAACA+AGG 0.667545 2.4:-45204193 MS.gene85289:CDS
GAAACAAAGTATACACCATG+AGG 0.669038 2.4:+45203679 None:intergenic
TTGGCTGGTCAATATGGACA+AGG 0.674064 2.4:-45203880 MS.gene85289:CDS
GGTTCTCCAGTTCAAGCCAG+GGG 0.675328 2.4:-45203098 MS.gene85289:CDS
ACATATCCTAAGGACCGAAG+AGG 0.686475 2.4:+45204510 None:intergenic
TTAATACAATAGATAGCACA+AGG 0.711625 2.4:+45203372 None:intergenic
AAAGAGACATAGGCAACCTG+AGG 0.715400 2.4:-45204283 MS.gene85289:CDS
ACTATGATGATGGATCTGAA+AGG 0.723341 2.4:-45201045 MS.gene85289:CDS
TAGCATTCTGATGTAGTACG+TGG 0.728853 2.4:-45202677 MS.gene85289:CDS
CTTGTAAAGGAATTCCTGCG+TGG 0.735670 2.4:+45203938 None:intergenic
GATAGTTGGAGAGATGCACA+GGG 0.743814 2.4:-45203733 MS.gene85289:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GGTAATAATTAAATAATATA+AGG - chr2.4:45203984-45204003 MS.gene85289:CDS 10.0%
!!! TATCTTTTTTATTTTTTAAG+GGG + chr2.4:45204594-45204613 None:intergenic 10.0%
!! AAATAAAAGAGAATATGAAA+TGG - chr2.4:45201472-45201491 MS.gene85289:intron 15.0%
!! AACTAATATACAATCAAATA+TGG - chr2.4:45202511-45202530 MS.gene85289:intron 15.0%
!! TAATAGATTTAAACAACATT+TGG - chr2.4:45201392-45201411 MS.gene85289:intron 15.0%
!! TTATTATATGTTGAAACTAT+TGG - chr2.4:45204472-45204491 MS.gene85289:CDS 15.0%
!!! AACATATTTATTTAAGCTTT+TGG - chr2.4:45202166-45202185 MS.gene85289:CDS 15.0%
!!! ATATTAGTTTTGTAATTTTC+TGG + chr2.4:45202500-45202519 None:intergenic 15.0%
!!! TAATAAAAACTTACTTCTTT+TGG + chr2.4:45204045-45204064 None:intergenic 15.0%
!! AATACAAGTGTAATGAAAAA+AGG - chr2.4:45204216-45204235 MS.gene85289:CDS 20.0%
!! AATTAATCAACTCATAGAAT+TGG + chr2.4:45203421-45203440 None:intergenic 20.0%
!! CCATTAGAAAAATATTATTC+TGG + chr2.4:45203034-45203053 None:intergenic 20.0%
!! TATAAAACATATATAGTGCA+TGG + chr2.4:45203881-45203900 None:intergenic 20.0%
!!! ATTTTAAGATAAACTTCTTC+TGG + chr2.4:45201456-45201475 None:intergenic 20.0%
!!! CAAAAATAGAATTTTTGTCT+TGG + chr2.4:45204113-45204132 None:intergenic 20.0%
!!! CAAGACAAAAATTCTATTTT+TGG - chr2.4:45204111-45204130 MS.gene85289:CDS 20.0%
!!! CCAGAATAATATTTTTCTAA+TGG - chr2.4:45203031-45203050 MS.gene85289:CDS 20.0%
!!! TGTATATTTTCATAAAATGC+TGG - chr2.4:45201884-45201903 MS.gene85289:intron 20.0%
!!! TTTTTTTTTTCCTATTCTTG+TGG - chr2.4:45202241-45202260 MS.gene85289:CDS 20.0%
! AAAACAATCTATGACCAAAT+TGG + chr2.4:45204450-45204469 None:intergenic 25.0%
! AAACAAAATCTTGACGATAT+CGG + chr2.4:45203004-45203023 None:intergenic 25.0%
! AAACAACTAAAAGTTAAGAC+AGG - chr2.4:45201774-45201793 MS.gene85289:intron 25.0%
! AAACAATCTATGACCAAATT+GGG + chr2.4:45204449-45204468 None:intergenic 25.0%
! AAGACAACTATAAATGTATC+AGG + chr2.4:45203829-45203848 None:intergenic 25.0%
! ACTTGTATCTGTAATTAATC+TGG - chr2.4:45202288-45202307 MS.gene85289:CDS 25.0%
! ATATCATATAGCAGTCATTA+AGG + chr2.4:45203211-45203230 None:intergenic 25.0%
! CAAGTTAATATTTACGATGA+AGG + chr2.4:45202273-45202292 None:intergenic 25.0%
! GAATGTTTCTTTCAAACAAA+TGG - chr2.4:45202658-45202677 MS.gene85289:CDS 25.0%
! GGATATTCTACAAAAACAAA+AGG + chr2.4:45204676-45204695 None:intergenic 25.0%
! TACAAGTCGTTATATACATA+TGG + chr2.4:45202840-45202859 None:intergenic 25.0%
! TCATGCAACAATTAAATATG+CGG - chr2.4:45203385-45203404 MS.gene85289:CDS 25.0%
! TGATACATTTATAGTTGTCT+TGG - chr2.4:45203828-45203847 MS.gene85289:CDS 25.0%
! TGCTATCTATTGTATTAATC+AGG - chr2.4:45202422-45202441 MS.gene85289:intron 25.0%
! TTAATACAATAGATAGCACA+AGG + chr2.4:45202420-45202439 None:intergenic 25.0%
!! AAGCTTTGATTGATATTGAT+AGG - chr2.4:45201619-45201638 MS.gene85289:intron 25.0%
!! CATTACACTTGTATTTTGTT+TGG + chr2.4:45204211-45204230 None:intergenic 25.0%
!! TAGCAATAATTGCTGTTAAT+TGG - chr2.4:45203800-45203819 MS.gene85289:CDS 25.0%
!! TTTTCATAAAATGCTGGAAT+TGG - chr2.4:45201890-45201909 MS.gene85289:intron 25.0%
!! TTTTTGTAGAATATCCCTTT+TGG - chr2.4:45204680-45204699 MS.gene85289:CDS 25.0%
!!! ATATCGTCAAGATTTTGTTT+CGG - chr2.4:45203004-45203023 MS.gene85289:CDS 25.0%
!!! GCTTTTGTTTCTTATTTGAA+CGG + chr2.4:45201134-45201153 None:intergenic 25.0%
!!! TTGTTTTGAATGTCACATTT+TGG - chr2.4:45202730-45202749 MS.gene85289:intron 25.0%
!!! TTTTGAAACACTTGCAATAT+GGG + chr2.4:45202789-45202808 None:intergenic 25.0%
AAAAATAGAGTCTTGCTAAC+CGG + chr2.4:45204163-45204182 None:intergenic 30.0%
AAAATGAAGGAAAATCTGGA+AGG - chr2.4:45201105-45201124 MS.gene85289:intron 30.0%
AAATGAAGGAAAATCTGGAA+GGG - chr2.4:45201106-45201125 MS.gene85289:intron 30.0%
ACAAGTGTAATGAAAAAAGG+AGG - chr2.4:45204219-45204238 MS.gene85289:CDS 30.0%
ATCAGACCTGATATTAAATC+AGG - chr2.4:45203917-45203936 MS.gene85289:CDS 30.0%
ATCTAATGCAGTAATTTACC+TGG + chr2.4:45203362-45203381 None:intergenic 30.0%
ATGTATATAACGACTTGTAC+AGG - chr2.4:45202841-45202860 MS.gene85289:CDS 30.0%
CAAGGTAATCAAAACCAAAA+GGG + chr2.4:45204348-45204367 None:intergenic 30.0%
CAAGTGTAATGAAAAAAGGA+GGG - chr2.4:45204220-45204239 MS.gene85289:CDS 30.0%
CAATCAGATATTCACATTGT+TGG + chr2.4:45204647-45204666 None:intergenic 30.0%
CATATTGCAAGTGTTTCAAA+AGG - chr2.4:45202788-45202807 MS.gene85289:CDS 30.0%
CATTAACTTTCTTCTGTGAT+AGG + chr2.4:45203610-45203629 None:intergenic 30.0%
CCTAAAAATGAAGGAAAATC+TGG - chr2.4:45201101-45201120 MS.gene85289:CDS 30.0%
CTGTAAATTTAACTCCTCTT+CGG - chr2.4:45201265-45201284 MS.gene85289:intron 30.0%
CTTGCAATCAAATCTATTCA+TGG - chr2.4:45202870-45202889 MS.gene85289:CDS 30.0%
GAATTACCTTGCTGAATATA+AGG - chr2.4:45201998-45202017 MS.gene85289:intron 30.0%
GACTATCCTGATTTAATATC+AGG + chr2.4:45203926-45203945 None:intergenic 30.0%
GATTCAATAGACTATGATGA+TGG - chr2.4:45204734-45204753 MS.gene85289:CDS 30.0%
GATTTAAACAACATTTGGCT+AGG - chr2.4:45201397-45201416 MS.gene85289:intron 30.0%
GTCATCGTTTCAAAGTTTAA+TGG - chr2.4:45203943-45203962 MS.gene85289:CDS 30.0%
GTTAATATTTACGATGAAGG+AGG + chr2.4:45202270-45202289 None:intergenic 30.0%
TACTTTGCATCATATGAACA+AGG - chr2.4:45201596-45201615 MS.gene85289:intron 30.0%
TCATCTTCATTATCAGACTT+TGG + chr2.4:45201555-45201574 None:intergenic 30.0%
TCTTGAGCTGAATTATAATG+AGG + chr2.4:45203293-45203312 None:intergenic 30.0%
TGTATATAACGACTTGTACA+GGG - chr2.4:45202842-45202861 MS.gene85289:CDS 30.0%
TGTTACATGCAACATAAGTT+GGG - chr2.4:45204538-45204557 MS.gene85289:CDS 30.0%
TTATCAGACTTTGGATAGAA+AGG + chr2.4:45201546-45201565 None:intergenic 30.0%
TTCAGCAAGGTAATTCTTAA+TGG + chr2.4:45201994-45202013 None:intergenic 30.0%
TTGTTACATGCAACATAAGT+TGG - chr2.4:45204537-45204556 MS.gene85289:CDS 30.0%
! TTTTTGTCATCCTCTTTACT+TGG - chr2.4:45202953-45202972 MS.gene85289:CDS 30.0%
!! CCAGATTTTCCTTCATTTTT+AGG + chr2.4:45201104-45201123 None:intergenic 30.0%
!!! CTTTTGAAACACTTGCAATA+TGG + chr2.4:45202790-45202809 None:intergenic 30.0%
AAAAGCGACCTGAAATAAGT+TGG + chr2.4:45201953-45201972 None:intergenic 35.0%
AAAGGAAAGCAATTGATGGA+TGG - chr2.4:45201231-45201250 MS.gene85289:intron 35.0%
AAAGTTTAATGGTCTGACCA+GGG - chr2.4:45203954-45203973 MS.gene85289:CDS 35.0%
AAGCAAAGGAAAGCAATTGA+TGG - chr2.4:45201227-45201246 MS.gene85289:intron 35.0%
AAGCAGCTAGTAAGGTAAAA+AGG + chr2.4:45203451-45203470 None:intergenic 35.0%
AAGGTTAGATGCAATTACTG+TGG - chr2.4:45200982-45201001 MS.gene85289:CDS 35.0%
AATTCAGCTCAAGATGACTT+TGG - chr2.4:45203299-45203318 MS.gene85289:CDS 35.0%
ACAACATGGAATAAGTTGCT+TGG - chr2.4:45203478-45203497 MS.gene85289:intron 35.0%
AGATACAGGAAAGACCTTTA+AGG - chr2.4:45201653-45201672 MS.gene85289:intron 35.0%
AGCAGCTAGTAAGGTAAAAA+GGG + chr2.4:45203450-45203469 None:intergenic 35.0%
AGGTTAGATGCAATTACTGT+GGG - chr2.4:45200983-45201002 MS.gene85289:CDS 35.0%
AGTTATTACCTACATCCCAA+AGG + chr2.4:45202328-45202347 None:intergenic 35.0%
ATGAAAAGTGAGTTTACCCA+TGG - chr2.4:45202546-45202565 MS.gene85289:intron 35.0%
ATTAGAGGACATTCCCTTAA+AGG + chr2.4:45201670-45201689 None:intergenic 35.0%
CATCTAGATCAACACCAAAA+GGG + chr2.4:45204697-45204716 None:intergenic 35.0%
CCAAGGTAATCAAAACCAAA+AGG + chr2.4:45204349-45204368 None:intergenic 35.0%
CCAAGTAAGAAAAAGGTCTA+GGG - chr2.4:45203670-45203689 MS.gene85289:CDS 35.0%
CTATATTGTACGAAAGTCCA+AGG + chr2.4:45204366-45204385 None:intergenic 35.0%
GAAACAAAGTATACACCATG+AGG + chr2.4:45202113-45202132 None:intergenic 35.0%
GAGAATGCCAAGTAAGAAAA+AGG - chr2.4:45203663-45203682 MS.gene85289:CDS 35.0%
GATACAGGAAAGACCTTTAA+GGG - chr2.4:45201654-45201673 MS.gene85289:intron 35.0%
GGAAGTCTACCTAAAAATGA+AGG - chr2.4:45201092-45201111 MS.gene85289:CDS 35.0%
GTCTGAATGAATGCATTGTT+CGG - chr2.4:45203134-45203153 MS.gene85289:CDS 35.0%
GTTATTACCTACATCCCAAA+GGG + chr2.4:45202327-45202346 None:intergenic 35.0%
TACTGTGAGAAAGTTGTTAG+TGG - chr2.4:45201363-45201382 MS.gene85289:intron 35.0%
TACTGTGGGAAAATTGTTAG+TGG - chr2.4:45200997-45201016 MS.gene85289:CDS 35.0%
TCAAGATGAGCGAAAAAAGA+AGG - chr2.4:45200963-45200982 MS.gene85289:CDS 35.0%
TCATCTAGATCAACACCAAA+AGG + chr2.4:45204698-45204717 None:intergenic 35.0%
TCCTTGCGTAATTTCTTAGT+GGG + chr2.4:45201801-45201820 None:intergenic 35.0%
TGAAAAGTGAGTTTACCCAT+GGG - chr2.4:45202547-45202566 MS.gene85289:intron 35.0%
TGAAGTAACGTACTGTGAAA+AGG - chr2.4:45201062-45201081 MS.gene85289:CDS 35.0%
TGCAACAATTAAATATGCGG+AGG - chr2.4:45203388-45203407 MS.gene85289:CDS 35.0%
TGCATCTTCAACTACATTAG+TGG + chr2.4:45202147-45202166 None:intergenic 35.0%
TGCTACATTGCAGAATTTGT+TGG - chr2.4:45202614-45202633 MS.gene85289:CDS 35.0%
TGTCTGACTTAATATGCGAA+CGG + chr2.4:45203519-45203538 None:intergenic 35.0%
TTATTACCTACATCCCAAAG+GGG + chr2.4:45202326-45202345 None:intergenic 35.0%
TTCAAAAGTCGAACCCAATT+TGG - chr2.4:45204433-45204452 MS.gene85289:CDS 35.0%
TTCCTTGCGTAATTTCTTAG+TGG + chr2.4:45201802-45201821 None:intergenic 35.0%
TTCTTCTATAAAACTCCCGA+GGG - chr2.4:45204273-45204292 MS.gene85289:CDS 35.0%
TTTCTTCTATAAAACTCCCG+AGG - chr2.4:45204272-45204291 MS.gene85289:CDS 35.0%
! AATCACTGGTTGTTCGATAA+TGG - chr2.4:45202031-45202050 MS.gene85289:CDS 35.0%
! AGGAGATACTCTAAAGATAC+AGG - chr2.4:45201639-45201658 MS.gene85289:intron 35.0%
! AGTTTGAAGATTCTGATTCG+TGG + chr2.4:45201751-45201770 None:intergenic 35.0%
! GACAAAGTAGTGGAAGAAAT+AGG - chr2.4:45202188-45202207 MS.gene85289:CDS 35.0%
! GTTTGAAGATTCTGATTCGT+GGG + chr2.4:45201750-45201769 None:intergenic 35.0%
! TAAGCTTTTGGACAAAGTAG+TGG - chr2.4:45202178-45202197 MS.gene85289:CDS 35.0%
! TTTCTTGTTTCATCTCCTCA+TGG - chr2.4:45202095-45202114 MS.gene85289:CDS 35.0%
! TTTTTACCTTACTAGCTGCT+TGG - chr2.4:45203450-45203469 MS.gene85289:CDS 35.0%
!! ACTATGATGATGGATCTGAA+AGG - chr2.4:45204744-45204763 MS.gene85289:CDS 35.0%
!! AGATGACTTTGGAACTGAAT+TGG - chr2.4:45203310-45203329 MS.gene85289:CDS 35.0%
!!! ATTTTTAGGTAGACTTCCTC+CGG + chr2.4:45201090-45201109 None:intergenic 35.0%
!!! CCTTTTGGTTTTGATTACCT+TGG - chr2.4:45204346-45204365 MS.gene85289:CDS 35.0%
AAATGCTTGAAGAAAGGCGA+AGG - chr2.4:45202379-45202398 MS.gene85289:intron 40.0%
AAGACGATGAAGAGCAAGTT+GGG - chr2.4:45201199-45201218 MS.gene85289:intron 40.0%
AAGTAAGCAGCCAAGTAAAG+AGG + chr2.4:45202966-45202985 None:intergenic 40.0%
AATATGAAATGGCATCGCAC+TGG - chr2.4:45201483-45201502 MS.gene85289:intron 40.0%
AATCTTGATCTTCTCAACGC+TGG + chr2.4:45201705-45201724 None:intergenic 40.0%
ACAACATTTGGCTAGGATTC+CGG - chr2.4:45201404-45201423 MS.gene85289:intron 40.0%
ACCCACTAAGAAATTACGCA+AGG - chr2.4:45201797-45201816 MS.gene85289:intron 40.0%
ACTCCTAACTATAAAGCTGC+TGG - chr2.4:45202354-45202373 MS.gene85289:intron 40.0%
AGGTGAAGAAAATGTAGTGC+AGG - chr2.4:45202208-45202227 MS.gene85289:CDS 40.0%
ATTTCTTAACGAGTGCCTTG+GGG - chr2.4:45204134-45204153 MS.gene85289:CDS 40.0%
CAAACAAATGGATGTCATCC+AGG - chr2.4:45202670-45202689 MS.gene85289:CDS 40.0%
CAAAGTTTAATGGTCTGACC+AGG - chr2.4:45203953-45203972 MS.gene85289:CDS 40.0%
CATAAAATGCTGGAATTGGC+TGG - chr2.4:45201894-45201913 MS.gene85289:intron 40.0%
CTCCTAACTATAAAGCTGCT+GGG - chr2.4:45202355-45202374 MS.gene85289:intron 40.0%
CTGGGAAAATGCTTGAAGAA+AGG - chr2.4:45202373-45202392 MS.gene85289:intron 40.0%
GAAATATGAGCCATTCTGGA+AGG - chr2.4:45202905-45202924 MS.gene85289:CDS 40.0%
GATTTCTTAACGAGTGCCTT+GGG - chr2.4:45204133-45204152 MS.gene85289:CDS 40.0%
GCAGATCATGCTAACATTGA+TGG - chr2.4:45204827-45204846 MS.gene85289:CDS 40.0%
GCCAAGTAAGAAAAAGGTCT+AGG - chr2.4:45203669-45203688 MS.gene85289:CDS 40.0%
GGAAGAAAATGCAGTATGTG+AGG - chr2.4:45202751-45202770 MS.gene85289:intron 40.0%
GTGGGAAAATTGTTAGTGGT+GGG - chr2.4:45201001-45201020 MS.gene85289:CDS 40.0%
TAGCATTCTGATGTAGTACG+TGG - chr2.4:45203112-45203131 MS.gene85289:CDS 40.0%
TATTACCTACATCCCAAAGG+GGG + chr2.4:45202325-45202344 None:intergenic 40.0%
TCTTGACGATATCGGTATGA+CGG + chr2.4:45202996-45203015 None:intergenic 40.0%
TGCTGAATATAAGGCTTCCT+GGG - chr2.4:45202007-45202026 MS.gene85289:intron 40.0%
TGTGAGAAAGTTGTTAGTGG+CGG - chr2.4:45201366-45201385 MS.gene85289:intron 40.0%
TGTGGGAAAATTGTTAGTGG+TGG - chr2.4:45201000-45201019 MS.gene85289:CDS 40.0%
TTGCTGAATATAAGGCTTCC+TGG - chr2.4:45202006-45202025 MS.gene85289:intron 40.0%
TTGGCAATTAGCACAAGAAC+AGG - chr2.4:45203329-45203348 MS.gene85289:CDS 40.0%
TTGTAGAACATTCTCAGCAG+AGG + chr2.4:45203708-45203727 None:intergenic 40.0%
! AAAGGCGAAGGAATTTGTTC+TGG - chr2.4:45202391-45202410 MS.gene85289:intron 40.0%
! AGGAAGCCTTATATTCAGCA+AGG + chr2.4:45202007-45202026 None:intergenic 40.0%
! CCCTAGACCTTTTTCTTACT+TGG + chr2.4:45203673-45203692 None:intergenic 40.0%
! CTGAAATAAGTTGGCTGGAT+GGG + chr2.4:45201944-45201963 None:intergenic 40.0%
! CTTTAGAAGCTCATTCCCAT+GGG + chr2.4:45202565-45202584 None:intergenic 40.0%
! CTTTTGCATGTGAGCATGAT+GGG - chr2.4:45203546-45203565 MS.gene85289:intron 40.0%
! GTAGAAGAGTGCATGGAAAA+GGG - chr2.4:45202474-45202493 MS.gene85289:CDS 40.0%
! GTTCGATAATGGCTGATAGT+TGG - chr2.4:45202042-45202061 MS.gene85289:CDS 40.0%
! TAGATGTGTAGAAGAGTGCA+TGG - chr2.4:45202467-45202486 MS.gene85289:CDS 40.0%
! TCTTTTGCATGTGAGCATGA+TGG - chr2.4:45203545-45203564 MS.gene85289:intron 40.0%
! TGTAGAAGAGTGCATGGAAA+AGG - chr2.4:45202473-45202492 MS.gene85289:CDS 40.0%
! TTCCCAGCAGCTTTATAGTT+AGG + chr2.4:45202360-45202379 None:intergenic 40.0%
!! AATTATTACCGGTTCAACCC+TGG + chr2.4:45203974-45203993 None:intergenic 40.0%
!! AGGATTTGTTGATCCTGGTT+GGG - chr2.4:45200927-45200946 MS.gene85289:CDS 40.0%
!! GGATCTGAAAGGCATCTAAA+GGG - chr2.4:45204755-45204774 MS.gene85289:CDS 40.0%
!! GTGTTTCAAAAGGTGTCTAG+TGG - chr2.4:45202798-45202817 MS.gene85289:CDS 40.0%
!! TGGATCTGAAAGGCATCTAA+AGG - chr2.4:45204754-45204773 MS.gene85289:CDS 40.0%
!!! TATTTCAGGTCGCTTTTTGC+AGG - chr2.4:45201956-45201975 MS.gene85289:intron 40.0%
!!! TCTTCTGGAGCACTTTTACA+AGG + chr2.4:45201441-45201460 None:intergenic 40.0%
AAAGAGACATAGGCAACCTG+AGG - chr2.4:45201506-45201525 MS.gene85289:intron 45.0%
AAAGGGCCAGTTTGACAAGT+TGG + chr2.4:45204331-45204350 None:intergenic 45.0%
AACGTACTGTGAAAAGGCTC+CGG - chr2.4:45201068-45201087 MS.gene85289:CDS 45.0%
AAGGAGGATGCCACAAGAAT+AGG + chr2.4:45202254-45202273 None:intergenic 45.0%
ACAAATCCTGTGGAGCGTAT+TGG + chr2.4:45200916-45200935 None:intergenic 45.0%
ACAAGAACAGGTCTTGAACC+AGG - chr2.4:45203341-45203360 MS.gene85289:CDS 45.0%
ACAGAGTCTGCAGCTTGTAA+AGG + chr2.4:45201867-45201886 None:intergenic 45.0%
ACATATCCTAAGGACCGAAG+AGG + chr2.4:45201282-45201301 None:intergenic 45.0%
ACCAGGATCAACAAATCCTG+TGG + chr2.4:45200926-45200945 None:intergenic 45.0%
AGATGATGAGTATGAGCAGC+AGG - chr2.4:45201569-45201588 MS.gene85289:intron 45.0%
AGCCATAGTAACCAGCTCAT+GGG + chr2.4:45204783-45204802 None:intergenic 45.0%
AGGAGAATGCTAAACAGTCC+AGG - chr2.4:45204004-45204023 MS.gene85289:CDS 45.0%
AGGATATGTTGACCCAGGAT+GGG - chr2.4:45201293-45201312 MS.gene85289:intron 45.0%
ATCGCACTGGAAAGAGACAT+AGG - chr2.4:45201496-45201515 MS.gene85289:intron 45.0%
CAACATTTGGCTAGGATTCC+GGG - chr2.4:45201405-45201424 MS.gene85289:intron 45.0%
CACGGAAATATGAGCCATTC+TGG - chr2.4:45202901-45202920 MS.gene85289:CDS 45.0%
CAGCATTTAGCACGAGTTTC+TGG - chr2.4:45201039-45201058 MS.gene85289:CDS 45.0%
CCATCCAGCCAACTTATTTC+AGG - chr2.4:45201942-45201961 MS.gene85289:intron 45.0%
CTATTCATGGCGATGATGCA+CGG - chr2.4:45202883-45202902 MS.gene85289:CDS 45.0%
CTGTCTATCACCTTCCAGAA+TGG + chr2.4:45202918-45202937 None:intergenic 45.0%
CTTCGCTGCTGACAAACATA+TGG + chr2.4:45204622-45204641 None:intergenic 45.0%
CTTGTAAAGGAATTCCTGCG+TGG + chr2.4:45201854-45201873 None:intergenic 45.0%
GAAGACGATGAAGAGCAAGT+TGG - chr2.4:45201198-45201217 MS.gene85289:intron 45.0%
GAGAATGCTAAACAGTCCAG+GGG - chr2.4:45204006-45204025 MS.gene85289:CDS 45.0%
GATAGTTGGAGAGATGCACA+GGG - chr2.4:45202056-45202075 MS.gene85289:CDS 45.0%
GGAGAATGCTAAACAGTCCA+GGG - chr2.4:45204005-45204024 MS.gene85289:CDS 45.0%
GGATTTCTTAACGAGTGCCT+TGG - chr2.4:45204132-45204151 MS.gene85289:CDS 45.0%
GTTCTCCTATTTCCCCCTTT+GGG - chr2.4:45202310-45202329 MS.gene85289:CDS 45.0%
TACATCCCAAAGGGGGAAAT+AGG + chr2.4:45202318-45202337 None:intergenic 45.0%
TAGGATATGTTGACCCAGGA+TGG - chr2.4:45201292-45201311 MS.gene85289:intron 45.0%
TCCTGGGTCAACATATCCTA+AGG + chr2.4:45201292-45201311 None:intergenic 45.0%
TCCTTAGGATATGTTGACCC+AGG - chr2.4:45201288-45201307 MS.gene85289:intron 45.0%
TGATAGTTGGAGAGATGCAC+AGG - chr2.4:45202055-45202074 MS.gene85289:CDS 45.0%
TGGTCAATATGGACAAGGAC+TGG - chr2.4:45201914-45201933 MS.gene85289:intron 45.0%
TTAACTCCTCTTCGGTCCTT+AGG - chr2.4:45201273-45201292 MS.gene85289:intron 45.0%
TTACCTTACTAGCTGCTTGG+TGG - chr2.4:45203453-45203472 MS.gene85289:CDS 45.0%
TTCCCATGAGCTGGTTACTA+TGG - chr2.4:45204778-45204797 MS.gene85289:CDS 45.0%
TTCGAGACTGGAAACAGATC+CGG - chr2.4:45204298-45204317 MS.gene85289:CDS 45.0%
TTTCTTAACGAGTGCCTTGG+GGG - chr2.4:45204135-45204154 MS.gene85289:CDS 45.0%
! ACTTGTCAAACTGGCCCTTT+TGG - chr2.4:45204331-45204350 MS.gene85289:CDS 45.0%
! AGCAAAGCTAGAAGCACACT+GGG + chr2.4:45202598-45202617 None:intergenic 45.0%
! CAAGTTGGGTGTAGAAGCAA+AGG - chr2.4:45201213-45201232 MS.gene85289:intron 45.0%
! CAATTGATGGATGGCAGGAA+TGG - chr2.4:45201240-45201259 MS.gene85289:intron 45.0%
! CATTCTGGAAGGTGATAGAC+AGG - chr2.4:45202916-45202935 MS.gene85289:CDS 45.0%
! CCTGAAATAAGTTGGCTGGA+TGG + chr2.4:45201945-45201964 None:intergenic 45.0%
! CTGGAATTGGCTGGTCAATA+TGG - chr2.4:45201903-45201922 MS.gene85289:intron 45.0%
! GAAAGCAATTGATGGATGGC+AGG - chr2.4:45201235-45201254 MS.gene85289:intron 45.0%
! TAGCAAAGCTAGAAGCACAC+TGG + chr2.4:45202599-45202618 None:intergenic 45.0%
! TTGGCTGGTCAATATGGACA+AGG - chr2.4:45201909-45201928 MS.gene85289:intron 45.0%
!! AAGAGCACTTACTTGCTGAC+TGG - chr2.4:45203726-45203745 MS.gene85289:CDS 45.0%
!! AATGAGCTTCTAAAGCCAGC+TGG - chr2.4:45202570-45202589 MS.gene85289:intron 45.0%
!! ATCTTCTCAACGCTGGTTCT+GGG + chr2.4:45201698-45201717 None:intergenic 45.0%
!! CAGGATTTGTTGATCCTGGT+TGG - chr2.4:45200926-45200945 MS.gene85289:CDS 45.0%
!! GCTTTAGAAGCTCATTCCCA+TGG + chr2.4:45202566-45202585 None:intergenic 45.0%
!! TATTTCCCCCTTTGGGATGT+AGG - chr2.4:45202317-45202336 MS.gene85289:CDS 45.0%
!! TCCACAGGATTTGTTGATCC+TGG - chr2.4:45200922-45200941 MS.gene85289:CDS 45.0%
!! TGGTTCTGGGCTAGTATTAG+AGG + chr2.4:45201685-45201704 None:intergenic 45.0%
!!! TTTTTTGCACCTCTTTCCCC+TGG + chr2.4:45202710-45202729 None:intergenic 45.0%
!! TTATATTATTTAATTATTAC+CGG + chr2.4:45203985-45204004 None:intergenic 5.0%
!!! ATTATCTTTTTTATTTTTTA+AGG + chr2.4:45204596-45204615 None:intergenic 5.0%
!!! TATATATGTTTTATAAATAA+AGG - chr2.4:45203886-45203905 MS.gene85289:CDS 5.0%
!!! TTATCTTTTTTATTTTTTAA+GGG + chr2.4:45204595-45204614 None:intergenic 5.0%
ACATAGGCAACCTGAGGCTA+AGG - chr2.4:45201512-45201531 MS.gene85289:intron 50.0%
ACTATGGCTGATGGAGCAGT+AGG - chr2.4:45204794-45204813 MS.gene85289:CDS 50.0%
AGGTTCTCCAGTTCAAGCCA+GGG - chr2.4:45202690-45202709 MS.gene85289:intron 50.0%
CAGCCATAGTAACCAGCTCA+TGG + chr2.4:45204784-45204803 None:intergenic 50.0%
CTGGAAACAGATCCGGTTTC+CGG - chr2.4:45204305-45204324 MS.gene85289:CDS 50.0%
GAGCTGGTTACTATGGCTGA+TGG - chr2.4:45204785-45204804 MS.gene85289:CDS 50.0%
GGTTCTCCTATTTCCCCCTT+TGG - chr2.4:45202309-45202328 MS.gene85289:CDS 50.0%
GTTGATCCTGGTTGGGATCA+TGG - chr2.4:45200934-45200953 MS.gene85289:CDS 50.0%
TCTAAAGGGTTCCCATGAGC+TGG - chr2.4:45204769-45204788 MS.gene85289:CDS 50.0%
TTCCGGCCAACTTGTCAAAC+TGG - chr2.4:45204322-45204341 MS.gene85289:CDS 50.0%
TTGCCACCAAGCAGCTAGTA+AGG + chr2.4:45203459-45203478 None:intergenic 50.0%
TTTCCAGTCTCGAAGACCCT+CGG + chr2.4:45204292-45204311 None:intergenic 50.0%
! ACAAAGCTCTGATGGCGACA+AGG - chr2.4:45203766-45203785 MS.gene85289:CDS 50.0%
! ACCACTGCACAAAGCTCTGA+TGG - chr2.4:45203758-45203777 MS.gene85289:CDS 50.0%
! GCGACCTGAAATAAGTTGGC+TGG + chr2.4:45201949-45201968 None:intergenic 50.0%
! TGCAAGTTCTTTTGCCACGC+AGG - chr2.4:45201837-45201856 MS.gene85289:intron 50.0%
! TTACAAGGTGCTACCTCTCC+CGG + chr2.4:45201426-45201445 None:intergenic 50.0%
! TTGACAAGTTGGCCGGAAAC+CGG + chr2.4:45204320-45204339 None:intergenic 50.0%
!! GATCTTCTCAACGCTGGTTC+TGG + chr2.4:45201699-45201718 None:intergenic 50.0%
!!! TTCAGGTCGCTTTTTGCAGG+AGG - chr2.4:45201959-45201978 MS.gene85289:intron 50.0%
AAGGCTTCCTGGGCAATCAC+TGG - chr2.4:45202017-45202036 MS.gene85289:intron 55.0%
ATGGCTCCAATACGCTCCAC+AGG - chr2.4:45200907-45200926 MS.gene85289:CDS 55.0%
CAACACCGTGTTCCCATCCT+GGG + chr2.4:45201308-45201327 None:intergenic 55.0%
CAGATCCGACTCATCGTCAC+TGG + chr2.4:45204855-45204874 None:intergenic 55.0%
CAGGTTCTCCAGTTCAAGCC+AGG - chr2.4:45202689-45202708 MS.gene85289:intron 55.0%
CAGTTCAAGCCAGGGGAAAG+AGG - chr2.4:45202698-45202717 MS.gene85289:intron 55.0%
CGAACAACCAGTGATTGCCC+AGG + chr2.4:45202027-45202046 None:intergenic 55.0%
GCAATGCCATGATCCCAACC+AGG + chr2.4:45200943-45200962 None:intergenic 55.0%
GGCATCAGATCCTTAGCCTC+AGG + chr2.4:45201525-45201544 None:intergenic 55.0%
GGTTCTCCAGTTCAAGCCAG+GGG - chr2.4:45202691-45202710 MS.gene85289:intron 55.0%
GTACTGTGAAAAGGCTCCGG+AGG - chr2.4:45201071-45201090 MS.gene85289:CDS 55.0%
GTTGACCCAGGATGGGAACA+CGG - chr2.4:45201300-45201319 MS.gene85289:intron 55.0%
GTTGGAGAGATGCACAGGGT+AGG - chr2.4:45202060-45202079 MS.gene85289:CDS 55.0%
TGGTCTGACCAGGGTTGAAC+CGG - chr2.4:45203963-45203982 MS.gene85289:CDS 55.0%
TGGTGCATAACCAATGCCCC+TGG + chr2.4:45204025-45204044 None:intergenic 55.0%
TTCCAGTCTCGAAGACCCTC+GGG + chr2.4:45204291-45204310 None:intergenic 55.0%
TTTGGCTAGGATTCCGGGAG+AGG - chr2.4:45201410-45201429 MS.gene85289:intron 55.0%
! CTCTTTCCCCTGGCTTGAAC+TGG + chr2.4:45202700-45202719 None:intergenic 55.0%
! CTGGCTTGAACTGGAGAACC+TGG + chr2.4:45202691-45202710 None:intergenic 55.0%
! GCCATCAGAGCTTTGTGCAG+TGG + chr2.4:45203762-45203781 None:intergenic 55.0%
! GCTAAACAGTCCAGGGGCAT+TGG - chr2.4:45204012-45204031 MS.gene85289:CDS 55.0%
! GCTGCTTGGTGGCAACAACA+TGG - chr2.4:45203464-45203483 MS.gene85289:intron 55.0%
! GGCCAGTTTGACAAGTTGGC+CGG + chr2.4:45204327-45204346 None:intergenic 55.0%
! TGGTGCCAGTGACGATGAGT+CGG - chr2.4:45204847-45204866 MS.gene85289:CDS 55.0%
!! ATGGGAACACGGTGTTGCTC+AGG - chr2.4:45201311-45201330 MS.gene85289:intron 55.0%
GCAACACCGTGTTCCCATCC+TGG + chr2.4:45201309-45201328 None:intergenic 60.0%
CTCCCGAGGGTCTTCGAGAC+TGG - chr2.4:45204286-45204305 MS.gene85289:CDS 65.0%
CTTGCTAACCGGTGCCCCCA+AGG + chr2.4:45204152-45204171 None:intergenic 65.0%
GAAGCACACTGGGTGCCAGC+TGG + chr2.4:45202588-45202607 None:intergenic 65.0%
! AACGAGTGCCTTGGGGGCAC+CGG - chr2.4:45204141-45204160 MS.gene85289:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 45200907 45204904 45200907 ID=MS.gene85289
chr2.4 mRNA 45200907 45204904 45200907 ID=MS.gene85289.t1;Parent=MS.gene85289
chr2.4 exon 45203582 45204904 45203582 ID=MS.gene85289.t1.exon1;Parent=MS.gene85289.t1
chr2.4 CDS 45203582 45204904 45203582 ID=cds.MS.gene85289.t1;Parent=MS.gene85289.t1
chr2.4 exon 45202786 45203472 45202786 ID=MS.gene85289.t1.exon2;Parent=MS.gene85289.t1
chr2.4 CDS 45202786 45203472 45202786 ID=cds.MS.gene85289.t1;Parent=MS.gene85289.t1
chr2.4 exon 45202613 45202696 45202613 ID=MS.gene85289.t1.exon3;Parent=MS.gene85289.t1
chr2.4 CDS 45202613 45202696 45202613 ID=cds.MS.gene85289.t1;Parent=MS.gene85289.t1
chr2.4 exon 45202449 45202524 45202449 ID=MS.gene85289.t1.exon4;Parent=MS.gene85289.t1
chr2.4 CDS 45202449 45202524 45202449 ID=cds.MS.gene85289.t1;Parent=MS.gene85289.t1
chr2.4 exon 45202024 45202346 45202024 ID=MS.gene85289.t1.exon5;Parent=MS.gene85289.t1
chr2.4 CDS 45202024 45202346 45202024 ID=cds.MS.gene85289.t1;Parent=MS.gene85289.t1
chr2.4 exon 45200907 45201122 45200907 ID=MS.gene85289.t1.exon6;Parent=MS.gene85289.t1
chr2.4 CDS 45200907 45201122 45200907 ID=cds.MS.gene85289.t1;Parent=MS.gene85289.t1
Gene Sequence

>MS.gene85289

ATGGCTCCAATACGCTCCACAGGATTTGTTGATCCTGGTTGGGATCATGGCATTGCTCAAGATGAGCGAAAAAAGAAGGTTAGATGCAATTACTGTGGGAAAATTGTTAGTGGTGGGATATACAGATTAAAGCAGCATTTAGCACGAGTTTCTGGTGAAGTAACGTACTGTGAAAAGGCTCCGGAGGAAGTCTACCTAAAAATGAAGGAAAATCTGGAAGGGTGCCGTTCAAATAAGAAACAAAAGCAAGTTGATGCACAAGCATATATGAATTTTCAGTCTAATGATGACGAAGACGATGAAGAGCAAGTTGGGTGTAGAAGCAAAGGAAAGCAATTGATGGATGGCAGGAATGGATCTGTAAATTTAACTCCTCTTCGGTCCTTAGGATATGTTGACCCAGGATGGGAACACGGTGTTGCTCAGGATGAGAGAAAGAAAAAAGTCAAATGCAGTTACTGTGAGAAAGTTGTTAGTGGCGGTATTAATAGATTTAAACAACATTTGGCTAGGATTCCGGGAGAGGTAGCACCTTGTAAAAGTGCTCCAGAAGAAGTTTATCTTAAAATAAAAGAGAATATGAAATGGCATCGCACTGGAAAGAGACATAGGCAACCTGAGGCTAAGGATCTGATGCCTTTCTATCCAAAGTCTGATAATGAAGATGATGAGTATGAGCAGCAGGAAGATACTTTGCATCATATGAACAAGGAAGCTTTGATTGATATTGATAGGAGATACTCTAAAGATACAGGAAAGACCTTTAAGGGAATGTCCTCTAATACTAGCCCAGAACCAGCGTTGAGAAGATCAAGATTAGATAGTTTTTACTTGAAACTTCCCACGAATCAGAATCTTCAAACTTGCAAACAACTAAAAGTTAAGACAGGACCCACTAAGAAATTACGCAAGGAACTTTTTTCTTCAATTTGCAAGTTCTTTTGCCACGCAGGAATTCCTTTACAAGCTGCAGACTCTGTATATTTTCATAAAATGCTGGAATTGGCTGGTCAATATGGACAAGGACTGGCATGCCCATCCAGCCAACTTATTTCAGGTCGCTTTTTGCAGGAGGAAATCAATTCCATTAAGAATTACCTTGCTGAATATAAGGCTTCCTGGGCAATCACTGGTTGTTCGATAATGGCTGATAGTTGGAGAGATGCACAGGGTAGGACAATTATTAACTTTCTTGTTTCATCTCCTCATGGTGTATACTTTGTTTCTTCAGTAGATGCCACTAATGTAGTTGAAGATGCAACATATTTATTTAAGCTTTTGGACAAAGTAGTGGAAGAAATAGGTGAAGAAAATGTAGTGCAGGTAAATTTTTTTTTTTTTTTTCCTATTCTTGTGGCATCCTCCTTCATCGTAAATATTAACTTGTATCTGTAATTAATCTGGTTCTCCTATTTCCCCCTTTGGGATGTAGGTAATAACTGAAAATACTCCTAACTATAAAGCTGCTGGGAAAATGCTTGAAGAAAGGCGAAGGAATTTGTTCTGGACGCCTTGTGCTATCTATTGTATTAATCAGGTGCTTGAAGATTTTCTGAAGATTAGATGTGTAGAAGAGTGCATGGAAAAGGGCCAGAAAATTACAAAACTAATATACAATCAAATATGGTTGTTAAATCTTATGAAAAGTGAGTTTACCCATGGGAATGAGCTTCTAAAGCCAGCTGGCACCCAGTGTGCTTCTAGCTTTGCTACATTGCAGAATTTGTTGGATCATCGAGTTAGTCTCAGAAGAATGTTTCTTTCAAACAAATGGATGTCATCCAGGTTCTCCAGTTCAAGCCAGGGGAAAGAGGTGCAAAAAATTGTTTTGAATGTCACATTTTGGAAGAAAATGCAGTATGTGAGGAATTCAGTATATCCCATATTGCAAGTGTTTCAAAAGGTGTCTAGTGGTGAGAGCTTGTCAATGCCATATGTATATAACGACTTGTACAGGGCAAAACTTGCAATCAAATCTATTCATGGCGATGATGCACGGAAATATGAGCCATTCTGGAAGGTGATAGACAGGCACTGTAACTCTCTTTTTTGTCATCCTCTTTACTTGGCTGCTTACTTCTTGAATCCGTCATACCGATATCGTCAAGATTTTGTTTCGGTATGCCAGAATAATATTTTTCTAATGGTTGTGAATTTTTTAATTTTATTCAAGTTCTCTTCTGAAGTGAATGTTTGATATGACTGTAGCATTCTGATGTAGTACGTGGTCTGAATGAATGCATTGTTCGGCTAGAACTAGATAATATGAGACGAATATCTGCATCAATGCAAGTAAGATATCCTTAATGACTGCTATATGATATACTTTATTAAATATTTTCTCATTATTATATCTTATTCACAATGATGTTATTTTTAGATTCCTCATTATAATTCAGCTCAAGATGACTTTGGAACTGAATTGGCAATTAGCACAAGAACAGGTCTTGAACCAGGTAAATTACTGCATTAGATGCTTCATGCAACAATTAAATATGCGGAGGTGTGTTGCCAATTCTATGAGTTGATTAATTAATTTACCCTTTTTACCTTACTAGCTGCTTGGTGGCAACAACATGGAATAAGTTGCTTGGAGTTGCAAAGAATAGCCGTTCGCATATTAAGTCAGACATGCTCATCTTTTGCATGTGAGCATGATGGGAGCATGTATGATCAGATATATAGCAAAAGAAAAAATCGCCTATCACAGAAGAAAGTTAATGACATTATGTACGTTCACTACAACTTGCGACTTAGAGAATGCCAAGTAAGAAAAAGGTCTAGGGAGTCGAAGTCAACCTCTGCTGAGAATGTTCTACAAGAGCACTTACTTGCTGACTGGATAGTTGATACCACTGCACAAAGCTCTGATGGCGACAAGGTAATCAGCGCTTAGCAATAATTGCTGTTAATTGGATTCCTGATACATTTATAGTTGTCTTGGCGATTGTTAATTTATATTTATATGTTTCCATGCACTATATATGTTTTATAAATAAAGGTAATCGAAATCAGACCTGATATTAAATCAGGATAGTCATCGTTTCAAAGTTTAATGGTCTGACCAGGGTTGAACCGGTAATAATTAAATAATATAAGGAGAATGCTAAACAGTCCAGGGGCATTGGTTATGCACCAAAAGAAGTAAGTTTTTATTAAAAAGTAATGTAATTATTACTTGATGAAAAGTGCAGTTTATATTTCCAAGACAAAAATTCTATTTTTGGATTTCTTAACGAGTGCCTTGGGGGCACCGGTTAGCAAGACTCTATTTTTTTTTATTGACTTTTAGAATCTTATACCAAACAAAATACAAGTGTAATGAAAAAAGGAGGGTTTTAAAAAAGAGACAACTAGTAAAGAACTTTCTTCTATAAAACTCCCGAGGGTCTTCGAGACTGGAAACAGATCCGGTTTCCGGCCAACTTGTCAAACTGGCCCTTTTGGTTTTGATTACCTTGGACTTTCGTACAATATAGTAATTTATCTGTAATAGTTCTTGATTCAATCACTTGATTTTGAAGAATTCAAAAGTCGAACCCAATTTGGTCATAGATTGTTTTTTTTATTATATGTTGAAACTATTGGCATCACTTGCATGCGACTTTCAGTTACATGTTATATTTTGCATTGTTACATGCAACATAAGTTGGGTATTGCTGTGTTTAAGATACTTATCGATATCCCCTTAAAAAATAAAAAAGATAATTCACCATATGTTTGTCAGCAGCGAAGCACCAACAATGTGAATATCTGATTGAATCTTCCTTTTGTTTTTGTAGAATATCCCTTTTGGTGTTGATCTAGATGACTATGAATATGAAAATGATTCAATAGACTATGATGATGGATCTGAAAGGCATCTAAAGGGTTCCCATGAGCTGGTTACTATGGCTGATGGAGCAGTAGGATCTTCAGATGCAGATCATGCTAACATTGATGGTGCCAGTGACGATGAGTCGGATCTGAATTATTTTGATGATGATATGAGTGAGTAA
Protein sequence

>MS.gene85289.t1

MAPIRSTGFVDPGWDHGIAQDERKKKVRCNYCGKIVSGGIYRLKQHLARVSGEVTYCEKAPEEVYLKMKENLEGCRSNKKQKQVDAQAYMNFQSNDDEDDEEQVGCRSKGKQLMDGRNGSVNLTPLRSLGYVDPGWEHGVAQDERKKKVKCSYCEKVVSGGINRFKQHLARIPGEVAPCKSAPEEVYLKIKENMKWHRTGKRHRQPEAKDLMPFYPKSDNEDDEYEQQEDTLHHMNKEALIDIDRRYSKDTGKTFKGMSSNTSPEPALRRSRLDSFYLKLPTNQNLQTCKQLKVKTGPTKKLRKELFSSICKFFCHAGIPLQAADSVYFHKMLELAGQYGQGLACPSSQLISGRFLQEEINSIKNYLAEYKASWAITGCSIMADSWRDAQGRTIINFLVSSPHGVYFVSSVDATNVVEDATYLFKLLDKVVEEIGEENVVQVITENTPNYKAAGKMLEERRRNLFWTPCAIYCINQVLEDFLKIRCVEECMEKGQKITKLIYNQIWLLNLMKSEFTHGNELLKPAGTQCASSFATLQNLLDHRVSLRRMFLSNKWMSSRFSSSSQGKEVQKIVLNVTFWKKMQYVRNSVYPILQVFQKVSSGESLSMPYVYNDLYRAKLAIKSIHGDDARKYEPFWKVIDRHCNSLFCHPLYLAAYFLNPSYRYRQDFVSHSDVVRGLNECIVRLELDNMRRISASMQIPHYNSAQDDFGTELAISTRTGLEPAAWWQQHGISCLELQRIAVRILSQTCSSFACEHDGSMYDQIYSKRKNRLSQKKVNDIMYVHYNLRLRECQVRKRSRESKSTSAENVLQEHLLADWIVDTTAQSSDGDKNIPFGVDLDDYEYENDSIDYDDGSERHLKGSHELVTMADGAVGSSDADHANIDGASDDESDLNYFDDDMSE