AlfalfaGEDB | MS.gene85442

M. sativa cultivar XinJiangDaYe / MS.gene85442

KEGG: -
GO: -
PFAM: PF05633.14

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85442.t1	XP_003624050.2	94.3	352	20	0	1	352	1	352	3.20E-183	651

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85442.t1	Q9LMM6	56.6	334	137	2	1	333	1	327	1.0e-100	368.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85442.t1	G7L6L1	94.3	352	20	0	1	352	1	352	2.3e-183	651.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene060259	MS.gene85442	0.808642	2.80E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85442.t1	MTR_7g078700	94.318	352	20	0	1	352	1	352	0.0	679
MS.gene85442.t1	MTR_8g028710	66.947	357	112	3	1	351	1	357	7.40e-172	482

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85442.t1	AT2G46080	58.213	347	145	0	1	347	1	347	2.39e-148	422
MS.gene85442.t1	AT1G01550	56.213	338	139	3	1	336	1	331	1.16e-132	382
MS.gene85442.t1	AT1G01550	56.213	338	139	3	1	336	1	331	1.16e-132	382
MS.gene85442.t1	AT4G01360	40.426	329	168	7	16	331	10	323	9.27e-71	224
MS.gene85442.t1	AT3G61500	36.957	184	104	4	1	182	2	175	3.98e-28	111
MS.gene85442.t1	AT3G61500	37.853	177	98	4	9	183	10	176	2.01e-27	110

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Find 70 sgRNAs with CRISPR-Local

Find 95 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTCACTCCCAAAAGCA+AGG	0.622520	7.2:+26988591	MS.gene85442:CDS
AACAACTTCATCCTTGCTTT+TGG	0.245955	7.2:-26988602	None:intergenic
AACCTGAGAATTGAAAATTG+TGG	0.634817	7.2:+26988928	MS.gene85442:CDS
AAGCTCAAGGTCTGTCATCA+GGG	0.582026	7.2:-26988686	None:intergenic
AAGCTGTTGATTTGTCTGCG+AGG	0.756834	7.2:+26989235	MS.gene85442:CDS
AATGATCTGGGTGGATCCTG+TGG	0.602839	7.2:-26988457	None:intergenic
ACGTGCATTGAAGTAAAAGA+TGG	0.571324	7.2:-26988819	None:intergenic
ACTAGATCTTCTTACAAAGG+AGG	0.643357	7.2:+26989362	MS.gene85442:CDS
ACTGTCAATGACCACATCTT+AGG	0.322065	7.2:+26989453	MS.gene85442:CDS
AGATCTTCTTACAAAGGAGG+TGG	0.548875	7.2:+26989365	MS.gene85442:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACCTGAGAATTGAAAATTG+TGG	+	chr7.2:26988928-26988947	MS.gene85442:CDS	30.0%
AAGGTTAAAAAGTCAGCAAA+AGG	+	chr7.2:26988991-26989010	MS.gene85442:CDS	30.0%
AGGTTAAAAAGTCAGCAAAA+GGG	+	chr7.2:26988992-26989011	MS.gene85442:CDS	30.0%
GAATTATACCCTATTATCCA+AGG	+	chr7.2:26989258-26989277	MS.gene85442:CDS	30.0%
TCTACAGAATCTTGTAAATG+AGG	+	chr7.2:26989161-26989180	MS.gene85442:CDS	30.0%
ACGTGCATTGAAGTAAAAGA+TGG	-	chr7.2:26988822-26988841	None:intergenic	35.0%
ACTAGATCTTCTTACAAAGG+AGG	+	chr7.2:26989362-26989381	MS.gene85442:CDS	35.0%
AGGACTAGATCTTCTTACAA+AGG	+	chr7.2:26989359-26989378	MS.gene85442:CDS	35.0%
ATTCACTGTATTGAACGAGT+TGG	+	chr7.2:26989212-26989231	MS.gene85442:CDS	35.0%
CCAAATGGGAAAAATGATCT+GGG	-	chr7.2:26988472-26988491	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	26988448	26989506	26988448	ID=MS.gene85442
chr7.2	mRNA	26988448	26989506	26988448	ID=MS.gene85442.t1;Parent=MS.gene85442
chr7.2	exon	26988448	26989506	26988448	ID=MS.gene85442.t1.exon1;Parent=MS.gene85442.t1
chr7.2	CDS	26988448	26989506	26988448	ID=cds.MS.gene85442.t1;Parent=MS.gene85442.t1

Gene Sequence

>MS.gene85442

ATGAGTCGTCCACAGGATCCACCCAGATCATTTTTCCCATTTGGAAATCCTTTCCGGATGATAGCACCTAAAGGCACTAAGTTATCTCCACAACTGCTGTCAGTATTATCTGCTTTTGAGGCAAATTTGGAAGAGAGGCTGAAAAACCTCACTCCCAAAAGCAAGGATGAAGTTGTTAGCTTGTCTTGGATGACTTCGGCTATGCAGGCACTTTGTGAAAGTCACAATGACATTAAAACCCTGATGACAGACCTTGAGCTTCCCGTGACTGACTGGGATGAGAAATGGATAGATGTGTACTTGGACATCAGTGTGAAGTTGCTAGACATATGCATTGCATTTAGCTCTGAGTTATCACGTCTGAAGCAGGGCCATCTTTTACTTCAATGCACGTTGCACAATTTAGGCTCCTTCTCATCAGATCAGCTTTTCCGGGCATGTTCTTCACTTGATGGTTGGAGGCAGCATATTGGTTCTAAAAACCTGAGAATTGAAAATTGTGGCAGCATTTTGGATAATCTGGCTGGGTCATCTGATCTTCCAAAGGTTAAAAAGTCAGCAAAAGGGAAGGTTTTGATGCAAGCTATCTATGGAGTGAAGGCGCTGACAGTTTTTGTGTGCAGTGTGTTTGCTACTGCTTTTTCAGGCTCTACAAAGAACTTGATGGATATGGATGTGGCTGATGTGTACTCTTGGGCTCCAACTTTTAAAGGTCTACAGAATCTTGTAAATGAGGAAATTAGGGTTAGATTTTCAAGTGGGAGATTCACTGTATTGAACGAGTTGGAAGCTGTTGATTTGTCTGCGAGGGAATTATACCCTATTATCCAAGGTGTTGTAGATACCATTGAAACAGAATCACATGCGAAGACTGTTGAGAAGCTAGGCAGAGCAACAGAGAATTTCTCTCAAGGACTAGATCTTCTTACAAAGGAGGTGGATGGCTTTTTCCAAGTGGTCTTGTCTGGTCGTGATGCCTTGCTGTCTAATCTGAGGTCAGGTGCAACTGTCAATGACCACATCTTAGGGGGTAACAAAGATGCACAAGCTGTCAATTGA

Protein sequence

>MS.gene85442.t1

MSRPQDPPRSFFPFGNPFRMIAPKGTKLSPQLLSVLSAFEANLEERLKNLTPKSKDEVVSLSWMTSAMQALCESHNDIKTLMTDLELPVTDWDEKWIDVYLDISVKLLDICIAFSSELSRLKQGHLLLQCTLHNLGSFSSDQLFRACSSLDGWRQHIGSKNLRIENCGSILDNLAGSSDLPKVKKSAKGKVLMQAIYGVKALTVFVCSVFATAFSGSTKNLMDMDVADVYSWAPTFKGLQNLVNEEIRVRFSSGRFTVLNELEAVDLSARELYPIIQGVVDTIETESHAKTVEKLGRATENFSQGLDLLTKEVDGFFQVVLSGRDALLSNLRSGATVNDHILGGNKDAQAVN