Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85499.t1 | RHN65795.1 | 81.5 | 389 | 68 | 2 | 1 | 386 | 54 | 441 | 9.30E-168 | 599.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85499.t1 | Q9S7T8 | 51.9 | 391 | 180 | 6 | 1 | 384 | 1 | 390 | 2.4e-108 | 393.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85499.t1 | G7IW05 | 81.5 | 389 | 68 | 2 | 1 | 386 | 1 | 388 | 6.7e-168 | 599.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene031697 | MS.gene85499 | PPI |
| MS.gene065945 | MS.gene85499 | PPI |
| MS.gene85499 | MS.gene045585 | PPI |
| MS.gene006610 | MS.gene85499 | PPI |
| MS.gene85499 | MS.gene065944 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85499.t1 | MTR_3g018740 | 81.491 | 389 | 68 | 2 | 1 | 386 | 1 | 388 | 0.0 | 616 |
| MS.gene85499.t1 | MTR_3g101010 | 73.196 | 388 | 99 | 3 | 1 | 384 | 1 | 387 | 0.0 | 548 |
| MS.gene85499.t1 | MTR_2g045980 | 70.153 | 392 | 107 | 4 | 1 | 386 | 1 | 388 | 0.0 | 521 |
| MS.gene85499.t1 | MTR_2g046030 | 68.878 | 392 | 112 | 4 | 1 | 386 | 1 | 388 | 0.0 | 516 |
| MS.gene85499.t1 | MTR_3g101030 | 66.835 | 395 | 110 | 5 | 10 | 384 | 34 | 427 | 0.0 | 512 |
| MS.gene85499.t1 | MTR_4g045707 | 68.407 | 383 | 118 | 2 | 4 | 384 | 5 | 386 | 0.0 | 511 |
| MS.gene85499.t1 | MTR_8g027395 | 66.667 | 387 | 118 | 4 | 3 | 384 | 15 | 395 | 5.06e-180 | 506 |
| MS.gene85499.t1 | MTR_3g048000 | 65.195 | 385 | 106 | 7 | 6 | 384 | 28 | 390 | 4.89e-173 | 488 |
| MS.gene85499.t1 | MTR_8g461160 | 66.921 | 393 | 115 | 8 | 5 | 386 | 6 | 394 | 1.73e-172 | 486 |
| MS.gene85499.t1 | MTR_3g101180 | 65.261 | 403 | 116 | 10 | 1 | 384 | 1 | 398 | 8.18e-172 | 485 |
| MS.gene85499.t1 | MTR_8g027420 | 65.104 | 384 | 118 | 4 | 3 | 384 | 4 | 373 | 3.04e-171 | 483 |
| MS.gene85499.t1 | MTR_4g088525 | 66.391 | 363 | 117 | 3 | 24 | 384 | 8 | 367 | 1.62e-169 | 478 |
| MS.gene85499.t1 | MTR_7g451890 | 63.104 | 393 | 132 | 5 | 3 | 385 | 12 | 401 | 3.74e-169 | 478 |
| MS.gene85499.t1 | MTR_7g047780 | 63.868 | 393 | 129 | 6 | 3 | 385 | 12 | 401 | 6.21e-168 | 475 |
| MS.gene85499.t1 | MTR_7g050810 | 62.404 | 391 | 138 | 4 | 3 | 385 | 14 | 403 | 5.08e-167 | 473 |
| MS.gene85499.t1 | MTR_7g050750 | 62.087 | 393 | 136 | 5 | 3 | 385 | 6 | 395 | 1.03e-165 | 469 |
| MS.gene85499.t1 | MTR_3g101130 | 63.731 | 386 | 132 | 4 | 4 | 384 | 5 | 387 | 1.12e-165 | 469 |
| MS.gene85499.t1 | MTR_4g088535 | 64.644 | 379 | 113 | 4 | 5 | 381 | 7 | 366 | 1.53e-161 | 458 |
| MS.gene85499.t1 | MTR_3g101050 | 62.827 | 382 | 120 | 6 | 8 | 384 | 32 | 396 | 1.31e-157 | 449 |
| MS.gene85499.t1 | MTR_3g018747 | 85.115 | 262 | 20 | 3 | 129 | 386 | 9 | 255 | 6.12e-155 | 437 |
| MS.gene85499.t1 | MTR_3g015620 | 60.207 | 387 | 125 | 4 | 5 | 385 | 16 | 379 | 3.58e-149 | 427 |
| MS.gene85499.t1 | MTR_3g102920 | 56.171 | 397 | 118 | 9 | 5 | 384 | 51 | 408 | 2.38e-133 | 388 |
| MS.gene85499.t1 | MTR_3g101190 | 53.886 | 386 | 100 | 5 | 1 | 384 | 1 | 310 | 1.05e-127 | 370 |
| MS.gene85499.t1 | MTR_3g101200 | 55.181 | 386 | 145 | 5 | 3 | 384 | 29 | 390 | 5.42e-127 | 371 |
| MS.gene85499.t1 | MTR_3g100995 | 67.589 | 253 | 80 | 2 | 134 | 385 | 12 | 263 | 8.44e-121 | 350 |
| MS.gene85499.t1 | MTR_7g050830 | 57.778 | 315 | 99 | 4 | 5 | 297 | 16 | 318 | 1.88e-114 | 337 |
| MS.gene85499.t1 | MTR_3g100010 | 56.550 | 313 | 87 | 4 | 28 | 307 | 40 | 336 | 3.45e-112 | 332 |
| MS.gene85499.t1 | MTR_3g015760 | 63.602 | 261 | 90 | 4 | 128 | 385 | 22 | 280 | 9.12e-105 | 310 |
| MS.gene85499.t1 | MTR_3g111160 | 71.689 | 219 | 57 | 3 | 170 | 384 | 1 | 218 | 3.24e-103 | 304 |
| MS.gene85499.t1 | MTR_2g046410 | 68.116 | 207 | 59 | 3 | 186 | 386 | 144 | 349 | 4.47e-88 | 270 |
| MS.gene85499.t1 | MTR_3g114310 | 42.278 | 395 | 204 | 12 | 6 | 383 | 20 | 407 | 2.05e-83 | 260 |
| MS.gene85499.t1 | MTR_3g100520 | 62.557 | 219 | 66 | 5 | 170 | 384 | 1 | 207 | 2.93e-83 | 253 |
| MS.gene85499.t1 | MTR_3g099970 | 63.366 | 202 | 56 | 3 | 123 | 323 | 14 | 198 | 2.26e-81 | 248 |
| MS.gene85499.t1 | MTR_3g101110 | 56.846 | 241 | 67 | 5 | 129 | 360 | 68 | 280 | 6.67e-80 | 247 |
| MS.gene85499.t1 | MTR_3g111150 | 61.582 | 177 | 44 | 2 | 7 | 183 | 1 | 153 | 4.99e-66 | 207 |
| MS.gene85499.t1 | MTR_3g101020 | 56.044 | 182 | 55 | 2 | 205 | 385 | 2 | 159 | 1.31e-60 | 193 |
| MS.gene85499.t1 | MTR_3g101150 | 63.694 | 157 | 49 | 3 | 236 | 384 | 1 | 157 | 1.70e-58 | 187 |
| MS.gene85499.t1 | MTR_3g102870 | 60.256 | 156 | 59 | 2 | 192 | 345 | 1 | 155 | 2.66e-57 | 185 |
| MS.gene85499.t1 | MTR_3g100990 | 66.667 | 132 | 44 | 0 | 1 | 132 | 1 | 132 | 5.00e-51 | 178 |
| MS.gene85499.t1 | MTR_4g093550 | 63.953 | 86 | 31 | 0 | 3 | 88 | 4 | 89 | 5.30e-30 | 111 |
| MS.gene85499.t1 | MTR_6g046890 | 65.753 | 73 | 25 | 0 | 13 | 85 | 7 | 79 | 1.99e-23 | 95.1 |
| MS.gene85499.t1 | MTR_3g101140 | 59.701 | 67 | 24 | 1 | 321 | 384 | 48 | 114 | 1.87e-15 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85499.t1 | AT1G47710 | 51.918 | 391 | 180 | 6 | 1 | 384 | 1 | 390 | 1.41e-139 | 403 |
| MS.gene85499.t1 | AT1G47710 | 51.918 | 391 | 180 | 6 | 1 | 384 | 28 | 417 | 1.11e-138 | 402 |
| MS.gene85499.t1 | AT3G45220 | 48.363 | 397 | 184 | 8 | 1 | 383 | 1 | 390 | 1.28e-122 | 360 |
| MS.gene85499.t1 | AT2G25240 | 48.974 | 390 | 184 | 8 | 1 | 383 | 1 | 382 | 1.36e-119 | 352 |
| MS.gene85499.t1 | AT2G26390 | 48.492 | 398 | 178 | 9 | 1 | 383 | 1 | 386 | 3.01e-118 | 348 |
| MS.gene85499.t1 | AT1G64030 | 43.478 | 391 | 193 | 8 | 1 | 383 | 1 | 371 | 1.91e-101 | 306 |
| MS.gene85499.t1 | AT2G14540 | 44.872 | 390 | 187 | 7 | 1 | 383 | 29 | 397 | 5.21e-98 | 298 |
| MS.gene85499.t1 | AT1G62170 | 42.602 | 392 | 194 | 7 | 1 | 383 | 62 | 431 | 8.74e-98 | 298 |
| MS.gene85499.t1 | AT2G35580 | 42.602 | 392 | 181 | 11 | 1 | 383 | 15 | 371 | 6.85e-94 | 286 |
| MS.gene85499.t1 | AT1G62170 | 39.294 | 425 | 194 | 8 | 1 | 383 | 62 | 464 | 1.01e-90 | 281 |
| MS.gene85499.t1 | AT1G64010 | 47.907 | 215 | 91 | 4 | 170 | 383 | 1 | 195 | 3.96e-62 | 198 |
| MS.gene85499.t1 | AT1G64010 | 46.500 | 200 | 86 | 4 | 185 | 383 | 2 | 181 | 1.84e-54 | 178 |
| MS.gene85499.t1 | AT1G62160 | 42.132 | 197 | 89 | 4 | 192 | 383 | 42 | 218 | 1.35e-34 | 127 |
| MS.gene85499.t1 | AT1G63280 | 55.462 | 119 | 48 | 3 | 126 | 242 | 5 | 120 | 7.27e-34 | 122 |
| MS.gene85499.t1 | AT1G51330 | 49.587 | 121 | 50 | 2 | 103 | 223 | 15 | 124 | 3.24e-26 | 104 |
| MS.gene85499.t1 | AT1G64020 | 31.405 | 121 | 80 | 3 | 1 | 119 | 1 | 120 | 3.09e-13 | 66.6 |
Find 77 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTAATGCACTCTACTTTAA+AGG | 0.141946 | 3.4:+12294231 | MS.gene85499:CDS |
| CGACTAAAGAAGTGAATTTA+TGG | 0.178990 | 3.4:+12294130 | MS.gene85499:CDS |
| TTATCTTTGCCTTTCTTATA+CGG | 0.278481 | 3.4:-12294402 | None:intergenic |
| GAGGAAGAAGTTCTTTAATA+AGG | 0.287252 | 3.4:-12294173 | None:intergenic |
| TCTCCTTCGTCAGTGGTGTA+TGG | 0.338625 | 3.4:+12293363 | MS.gene85499:CDS |
| AATAAACTGCATCTCCTTGC+TGG | 0.359084 | 3.4:-12294346 | None:intergenic |
| ACTGGAACCATTCTCTTTGT+TGG | 0.359618 | 3.4:+12294843 | MS.gene85499:CDS |
| TATTTCTGATTAGAGAAGAT+TGG | 0.360147 | 3.4:+12294820 | MS.gene85499:CDS |
| AAAAGATGGCTTGTCGGCTT+TGG | 0.374648 | 3.4:+12294461 | MS.gene85499:CDS |
| AATTCACCTACTTCTTCTTC+AGG | 0.377679 | 3.4:-12294534 | None:intergenic |
| CTTGTCGGCTTTGGTTAATA+AGG | 0.379850 | 3.4:+12294470 | MS.gene85499:CDS |
| ATCTAATTACGAGGCCACTA+TGG | 0.387391 | 3.4:+12293433 | MS.gene85499:CDS |
| TTCTTTCAAGAACAGATGTT+TGG | 0.395078 | 3.4:-12293144 | None:intergenic |
| TGAAGGAAGGTTGAAGAGAA+AGG | 0.398588 | 3.4:-12293397 | None:intergenic |
| TTCCTTCCAAATGCAAAAGA+TGG | 0.403729 | 3.4:+12294447 | MS.gene85499:CDS |
| ATCATTGCTGCTGGCTCTGA+GGG | 0.431071 | 3.4:+12293218 | MS.gene85499:CDS |
| AGATGACACGATTTCTTTGA+AGG | 0.432418 | 3.4:-12293414 | None:intergenic |
| CTCCTTGCTGGTCGTCATGA+AGG | 0.435175 | 3.4:-12294334 | None:intergenic |
| TGCATAGGGAAACATTCGTT+TGG | 0.439694 | 3.4:-12293118 | None:intergenic |
| GTTAAGCTATCAACTGATCT+TGG | 0.441723 | 3.4:-12294195 | None:intergenic |
| GAAGGAAGGTTGAAGAGAAA+GGG | 0.450222 | 3.4:-12293396 | None:intergenic |
| CTCCTTCGTCAGTGGTGTAT+GGG | 0.456822 | 3.4:+12293364 | MS.gene85499:CDS |
| CTTCGTCTTCCGTATAAGAA+AGG | 0.461270 | 3.4:+12294393 | MS.gene85499:CDS |
| GACTAAAGAAGTGAATTTAT+GGG | 0.462620 | 3.4:+12294131 | MS.gene85499:CDS |
| AGGAAAATGTACATAGAGAA+TGG | 0.462827 | 3.4:-12294429 | None:intergenic |
| TTCATTGAAGTAAATGAAGA+AGG | 0.463233 | 3.4:+12294708 | MS.gene85499:CDS |
| CTCTCCGACGCTTCTCCCAC+AGG | 0.464213 | 3.4:+12293329 | MS.gene85499:CDS |
| ATCAGCTTCTCGACTTCCTC+CGG | 0.467282 | 3.4:+12293252 | MS.gene85499:CDS |
| GTCTCATATGCTGAAAGAGC+TGG | 0.485637 | 3.4:+12294596 | MS.gene85499:CDS |
| TAGGGAAACATTCGTTTGGT+TGG | 0.488135 | 3.4:-12293114 | None:intergenic |
| CATCATTGCTGCTGGCTCTG+AGG | 0.497047 | 3.4:+12293217 | MS.gene85499:CDS |
| TGCATTAGCAAAGATGAGTC+TGG | 0.499282 | 3.4:-12294217 | None:intergenic |
| AAATGCAAAAGATGGCTTGT+CGG | 0.500590 | 3.4:+12294455 | MS.gene85499:CDS |
| CTGATTAGAGAAGATTGGAC+TGG | 0.501644 | 3.4:+12294825 | MS.gene85499:CDS |
| GAAATATTTCAGAAACAGAA+AGG | 0.510094 | 3.4:-12294677 | None:intergenic |
| CACTCTACTTTAAAGGAGCA+TGG | 0.514338 | 3.4:+12294238 | MS.gene85499:CDS |
| TGACCGAGCTGCCATTCAAA+AGG | 0.515686 | 3.4:-12294305 | None:intergenic |
| CAGATGTTTGGCAATGCATA+GGG | 0.522319 | 3.4:-12293132 | None:intergenic |
| GACACGATTTCTTTGAAGGA+AGG | 0.523677 | 3.4:-12293410 | None:intergenic |
| GTCAAACCTCCAGGAGTGAA+AGG | 0.524050 | 3.4:-12294630 | None:intergenic |
| CACTTGTCCAACAAAGAGAA+TGG | 0.528533 | 3.4:-12294850 | None:intergenic |
| TCTCTAATCAGAAATAAGAA+AGG | 0.528708 | 3.4:-12294813 | None:intergenic |
| TTTGAATGGCAGCTCGGTCA+AGG | 0.529731 | 3.4:+12294308 | MS.gene85499:CDS |
| GTCGGCTTTGGTTAATAAGG+TGG | 0.531612 | 3.4:+12294473 | MS.gene85499:CDS |
| GTACTAAGCATCATTGCTGC+TGG | 0.533492 | 3.4:+12293209 | MS.gene85499:CDS |
| AGTCTTCCTGAAGAAGAAGT+AGG | 0.534032 | 3.4:+12294528 | MS.gene85499:CDS |
| GATGATCAGTGGAGTTAGAC+CGG | 0.536442 | 3.4:-12293271 | None:intergenic |
| ACAGATGTTTGGCAATGCAT+AGG | 0.540369 | 3.4:-12293133 | None:intergenic |
| GAAATCAACATAAGCCATAG+TGG | 0.543010 | 3.4:-12293447 | None:intergenic |
| TGCTAAGATCACTGATCAAG+AGG | 0.544299 | 3.4:-12294879 | None:intergenic |
| TCCACCTGTGGGAGAAGCGT+CGG | 0.544963 | 3.4:-12293333 | None:intergenic |
| TCCTTGCTGGTCGTCATGAA+GGG | 0.547728 | 3.4:-12294333 | None:intergenic |
| TCTCATATGCTGAAAGAGCT+GGG | 0.564193 | 3.4:+12294597 | MS.gene85499:CDS |
| AAGCTATCAACTGATCTTGG+AGG | 0.569083 | 3.4:-12294192 | None:intergenic |
| CCTCGACTCTCCTTCGTCAG+TGG | 0.575802 | 3.4:+12293356 | MS.gene85499:CDS |
| TAATCAGAAATAAGAAAGGA+TGG | 0.579869 | 3.4:-12294809 | None:intergenic |
| TTATGTTGATTTCATAACCA+AGG | 0.579962 | 3.4:+12293457 | MS.gene85499:CDS |
| TTTGGTTGGTGATTGATTCG+CGG | 0.591419 | 3.4:-12293100 | None:intergenic |
| AATCTGAGTTACTACACCAC+AGG | 0.598662 | 3.4:+12294502 | MS.gene85499:CDS |
| CACGACAGAAACAAGCTGAA+AGG | 0.599858 | 3.4:-12293306 | None:intergenic |
| GTCGAGAAGCTGATGTTGTG+TGG | 0.601600 | 3.4:-12293243 | None:intergenic |
| TCCGACGCTTCTCCCACAGG+TGG | 0.602069 | 3.4:+12293332 | MS.gene85499:CDS |
| TATGCTGAAAGAGCTGGGAG+TGG | 0.605035 | 3.4:+12294602 | MS.gene85499:CDS |
| GAGAGTCGAGGTCCACCTGT+GGG | 0.625673 | 3.4:-12293344 | None:intergenic |
| TAGTGCTGCAATATGTTCCG+AGG | 0.625856 | 3.4:+12294749 | MS.gene85499:CDS |
| AGTTTGAAATCGAATACCCT+CGG | 0.636520 | 3.4:-12294766 | None:intergenic |
| GAGATAGTTGAGATGATCAG+TGG | 0.640258 | 3.4:-12293282 | None:intergenic |
| TCGAGAAGCTGATGTTGTGT+GGG | 0.640498 | 3.4:-12293242 | None:intergenic |
| TCCCTTCATGACGACCAGCA+AGG | 0.643413 | 3.4:+12294332 | MS.gene85499:CDS |
| GGAGAGTCGAGGTCCACCTG+TGG | 0.645915 | 3.4:-12293345 | None:intergenic |
| GATCAGTGGAGTTAGACCGG+AGG | 0.657622 | 3.4:-12293268 | None:intergenic |
| AGTGCTGCAATATGTTCCGA+GGG | 0.658631 | 3.4:+12294750 | MS.gene85499:CDS |
| AACCCATACACCACTGACGA+AGG | 0.659348 | 3.4:-12293366 | None:intergenic |
| AGTACAATTTGAAGAGACAG+TGG | 0.677153 | 3.4:-12293191 | None:intergenic |
| AATCGTGTCATCTAATTACG+AGG | 0.678044 | 3.4:+12293424 | MS.gene85499:CDS |
| CTTCAGGAAGACTAAACCTG+TGG | 0.690571 | 3.4:-12294518 | None:intergenic |
| CCACTGACGAAGGAGAGTCG+AGG | 0.741972 | 3.4:-12293356 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAAATTTAAAAATCAATTA+TGG | - | chr3.4:12294087-12294106 | None:intergenic | 10.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr3.4:12293493-12293512 | None:intergenic | 100.0% |
| !!! | TAAATTTGATATTGTTTTGA+AGG | + | chr3.4:12294098-12294117 | MS.gene85499:intron | 15.0% |
| !!! | TATTTTCCATTTACAATTAA+TGG | + | chr3.4:12293548-12293567 | MS.gene85499:intron | 15.0% |
| !! | AATAGAAGAAATTATGCTAA+AGG | - | chr3.4:12294029-12294048 | None:intergenic | 20.0% |
| !! | ATACCTCAAAATATACAATA+TGG | - | chr3.4:12293854-12293873 | None:intergenic | 20.0% |
| !!! | AATAACATTTGCTCTAAATT+AGG | - | chr3.4:12293619-12293638 | None:intergenic | 20.0% |
| !!! | TCAAATGAAATTTTGAATCT+CGG | - | chr3.4:12294567-12294586 | None:intergenic | 20.0% |
| ! | ACTTATAAGTATTATGCTCT+TGG | + | chr3.4:12293676-12293695 | MS.gene85499:intron | 25.0% |
| ! | ATAAAATAAACTGTTTGCGA+AGG | - | chr3.4:12293579-12293598 | None:intergenic | 25.0% |
| ! | GAAATATTTCAGAAACAGAA+AGG | - | chr3.4:12294680-12294699 | None:intergenic | 25.0% |
| ! | GACTAAAGAAGTGAATTTAT+GGG | + | chr3.4:12294131-12294150 | MS.gene85499:CDS | 25.0% |
| ! | GTAAATGGAAAATAAAAGCA+GGG | - | chr3.4:12293542-12293561 | None:intergenic | 25.0% |
| ! | GTAGATCCATTAATTGTAAA+TGG | - | chr3.4:12293557-12293576 | None:intergenic | 25.0% |
| ! | TAATCAGAAATAAGAAAGGA+TGG | - | chr3.4:12294812-12294831 | None:intergenic | 25.0% |
| ! | TCTCTAATCAGAAATAAGAA+AGG | - | chr3.4:12294816-12294835 | None:intergenic | 25.0% |
| ! | TGTAAATGGAAAATAAAAGC+AGG | - | chr3.4:12293543-12293562 | None:intergenic | 25.0% |
| ! | TTATCTTTGCCTTTCTTATA+CGG | - | chr3.4:12294405-12294424 | None:intergenic | 25.0% |
| ! | TTCATTGAAGTAAATGAAGA+AGG | + | chr3.4:12294708-12294727 | MS.gene85499:CDS | 25.0% |
| ! | TTCTTTGATCAATATAGCTT+TGG | - | chr3.4:12293924-12293943 | None:intergenic | 25.0% |
| ! | TTGAACAAATAGATTCTTTC+TGG | - | chr3.4:12294061-12294080 | None:intergenic | 25.0% |
| !! | AAAGTAGGTTCTTCTTTTAA+AGG | + | chr3.4:12293732-12293751 | MS.gene85499:intron | 25.0% |
| !! | TATGATTTTCACCTTTTGAA+TGG | + | chr3.4:12294294-12294313 | MS.gene85499:CDS | 25.0% |
| !! | TATTTCTGATTAGAGAAGAT+TGG | + | chr3.4:12294820-12294839 | MS.gene85499:CDS | 25.0% |
| !! | TGTCCATATTGTATATTTTG+AGG | + | chr3.4:12293848-12293867 | MS.gene85499:intron | 25.0% |
| !!! | GTTATTTTACTTTTGAAGCA+TGG | + | chr3.4:12293633-12293652 | MS.gene85499:intron | 25.0% |
| !!! | TTATGTTGATTTCATAACCA+AGG | + | chr3.4:12293457-12293476 | MS.gene85499:CDS | 25.0% |
| AGGAAAATGTACATAGAGAA+TGG | - | chr3.4:12294432-12294451 | None:intergenic | 30.0% | |
| CAGTGCTATAAAATTTGAAG+AGG | - | chr3.4:12293984-12294003 | None:intergenic | 30.0% | |
| CGACTAAAGAAGTGAATTTA+TGG | + | chr3.4:12294130-12294149 | MS.gene85499:CDS | 30.0% | |
| GAGGAAGAAGTTCTTTAATA+AGG | - | chr3.4:12294176-12294195 | None:intergenic | 30.0% | |
| GTATATTTCAGCACAAAGTA+GGG | + | chr3.4:12293809-12293828 | MS.gene85499:intron | 30.0% | |
| TGTATATTTCAGCACAAAGT+AGG | + | chr3.4:12293808-12293827 | MS.gene85499:intron | 30.0% | |
| TTCTTTCAAGAACAGATGTT+TGG | - | chr3.4:12293147-12293166 | None:intergenic | 30.0% | |
| !! | CAAAAGTTTTGTCACATACA+CGG | - | chr3.4:12293950-12293969 | None:intergenic | 30.0% |
| AATCGTGTCATCTAATTACG+AGG | + | chr3.4:12293424-12293443 | MS.gene85499:CDS | 35.0% | |
| AATTCACCTACTTCTTCTTC+AGG | - | chr3.4:12294537-12294556 | None:intergenic | 35.0% | |
| AGATGACACGATTTCTTTGA+AGG | - | chr3.4:12293417-12293436 | None:intergenic | 35.0% | |
| AGTACAATTTGAAGAGACAG+TGG | - | chr3.4:12293194-12293213 | None:intergenic | 35.0% | |
| CTGATTCTAGTGTAGAAAGT+AGG | + | chr3.4:12293717-12293736 | MS.gene85499:intron | 35.0% | |
| GAAATCAACATAAGCCATAG+TGG | - | chr3.4:12293450-12293469 | None:intergenic | 35.0% | |
| GCTAATGCACTCTACTTTAA+AGG | + | chr3.4:12294231-12294250 | MS.gene85499:CDS | 35.0% | |
| GTTAAGCTATCAACTGATCT+TGG | - | chr3.4:12294198-12294217 | None:intergenic | 35.0% | |
| TGGGCTGAAAAAAAGACAAA+TGG | + | chr3.4:12294150-12294169 | MS.gene85499:CDS | 35.0% | |
| TTCCTTCCAAATGCAAAAGA+TGG | + | chr3.4:12294447-12294466 | MS.gene85499:CDS | 35.0% | |
| ! | AAATGCAAAAGATGGCTTGT+CGG | + | chr3.4:12294455-12294474 | MS.gene85499:CDS | 35.0% |
| ! | AGTTTGAAATCGAATACCCT+CGG | - | chr3.4:12294769-12294788 | None:intergenic | 35.0% |
| AAGCTATCAACTGATCTTGG+AGG | - | chr3.4:12294195-12294214 | None:intergenic | 40.0% | |
| AATAAACTGCATCTCCTTGC+TGG | - | chr3.4:12294349-12294368 | None:intergenic | 40.0% | |
| AATCTGAGTTACTACACCAC+AGG | + | chr3.4:12294502-12294521 | MS.gene85499:CDS | 40.0% | |
| ACAGATGTTTGGCAATGCAT+AGG | - | chr3.4:12293136-12293155 | None:intergenic | 40.0% | |
| ACTGGAACCATTCTCTTTGT+TGG | + | chr3.4:12294843-12294862 | MS.gene85499:CDS | 40.0% | |
| AGGATGAAGTGTGTGATTCA+TGG | + | chr3.4:12293752-12293771 | MS.gene85499:intron | 40.0% | |
| AGTCTTCCTGAAGAAGAAGT+AGG | + | chr3.4:12294528-12294547 | MS.gene85499:CDS | 40.0% | |
| ATCTAATTACGAGGCCACTA+TGG | + | chr3.4:12293433-12293452 | MS.gene85499:CDS | 40.0% | |
| CACTTGTCCAACAAAGAGAA+TGG | - | chr3.4:12294853-12294872 | None:intergenic | 40.0% | |
| CAGATGTTTGGCAATGCATA+GGG | - | chr3.4:12293135-12293154 | None:intergenic | 40.0% | |
| CTGATTAGAGAAGATTGGAC+TGG | + | chr3.4:12294825-12294844 | MS.gene85499:CDS | 40.0% | |
| CTTCGTCTTCCGTATAAGAA+AGG | + | chr3.4:12294393-12294412 | MS.gene85499:CDS | 40.0% | |
| GAAGGAAGGTTGAAGAGAAA+GGG | - | chr3.4:12293399-12293418 | None:intergenic | 40.0% | |
| GAGATAGTTGAGATGATCAG+TGG | - | chr3.4:12293285-12293304 | None:intergenic | 40.0% | |
| TAGGGAAACATTCGTTTGGT+TGG | - | chr3.4:12293117-12293136 | None:intergenic | 40.0% | |
| TCCTGGAGGTTTGACAAAAA+TGG | + | chr3.4:12294638-12294657 | MS.gene85499:CDS | 40.0% | |
| TCTCATATGCTGAAAGAGCT+GGG | + | chr3.4:12294597-12294616 | MS.gene85499:CDS | 40.0% | |
| TGAAGGAAGGTTGAAGAGAA+AGG | - | chr3.4:12293400-12293419 | None:intergenic | 40.0% | |
| TGCATAGGGAAACATTCGTT+TGG | - | chr3.4:12293121-12293140 | None:intergenic | 40.0% | |
| TGCATTAGCAAAGATGAGTC+TGG | - | chr3.4:12294220-12294239 | None:intergenic | 40.0% | |
| TGGAAAATAAAAGCAGGGCA+TGG | - | chr3.4:12293537-12293556 | None:intergenic | 40.0% | |
| TGGAGGTTTGACAAAAATGG+TGG | + | chr3.4:12294641-12294660 | MS.gene85499:CDS | 40.0% | |
| ! | AGCCATCTTTTGCATTTGGA+AGG | - | chr3.4:12294452-12294471 | None:intergenic | 40.0% |
| ! | CACTCTACTTTAAAGGAGCA+TGG | + | chr3.4:12294238-12294257 | MS.gene85499:CDS | 40.0% |
| ! | GACAAGCCATCTTTTGCATT+TGG | - | chr3.4:12294456-12294475 | None:intergenic | 40.0% |
| ! | GACACGATTTCTTTGAAGGA+AGG | - | chr3.4:12293413-12293432 | None:intergenic | 40.0% |
| !! | ACCATTTTTGTCAAACCTCC+AGG | - | chr3.4:12294642-12294661 | None:intergenic | 40.0% |
| !! | CTTGTCGGCTTTGGTTAATA+AGG | + | chr3.4:12294470-12294489 | MS.gene85499:CDS | 40.0% |
| !! | TTTGGTTGGTGATTGATTCG+CGG | - | chr3.4:12293103-12293122 | None:intergenic | 40.0% |
| AGTGCTGCAATATGTTCCGA+GGG | + | chr3.4:12294750-12294769 | MS.gene85499:CDS | 45.0% | |
| CACGACAGAAACAAGCTGAA+AGG | - | chr3.4:12293309-12293328 | None:intergenic | 45.0% | |
| CTTCAGGAAGACTAAACCTG+TGG | - | chr3.4:12294521-12294540 | None:intergenic | 45.0% | |
| GATGATCAGTGGAGTTAGAC+CGG | - | chr3.4:12293274-12293293 | None:intergenic | 45.0% | |
| GGGGTAAGACAAACATACCT+TGG | - | chr3.4:12293477-12293496 | None:intergenic | 45.0% | |
| GTACTAAGCATCATTGCTGC+TGG | + | chr3.4:12293209-12293228 | MS.gene85499:CDS | 45.0% | |
| GTCTCATATGCTGAAAGAGC+TGG | + | chr3.4:12294596-12294615 | MS.gene85499:CDS | 45.0% | |
| TAGTGCTGCAATATGTTCCG+AGG | + | chr3.4:12294749-12294768 | MS.gene85499:CDS | 45.0% | |
| TCGAGAAGCTGATGTTGTGT+GGG | - | chr3.4:12293245-12293264 | None:intergenic | 45.0% | |
| ! | AGGGCATGGATTGAAAGAGT+GGG | - | chr3.4:12293523-12293542 | None:intergenic | 45.0% |
| ! | GTCGGCTTTGGTTAATAAGG+TGG | + | chr3.4:12294473-12294492 | MS.gene85499:CDS | 45.0% |
| ! | GTTTTACCTTTCACTCCTGG+AGG | + | chr3.4:12294624-12294643 | MS.gene85499:CDS | 45.0% |
| ! | TCACCTTTTGAATGGCAGCT+CGG | + | chr3.4:12294302-12294321 | MS.gene85499:CDS | 45.0% |
| !! | AAAAGATGGCTTGTCGGCTT+TGG | + | chr3.4:12294461-12294480 | MS.gene85499:CDS | 45.0% |
| !! | GTGGTTTTACCTTTCACTCC+TGG | + | chr3.4:12294621-12294640 | MS.gene85499:CDS | 45.0% |
| AACCCATACACCACTGACGA+AGG | - | chr3.4:12293369-12293388 | None:intergenic | 50.0% | |
| ATCAGCTTCTCGACTTCCTC+CGG | + | chr3.4:12293252-12293271 | MS.gene85499:CDS | 50.0% | |
| CTCCTTCGTCAGTGGTGTAT+GGG | + | chr3.4:12293364-12293383 | MS.gene85499:CDS | 50.0% | |
| GTCAAACCTCCAGGAGTGAA+AGG | - | chr3.4:12294633-12294652 | None:intergenic | 50.0% | |
| GTCGAGAAGCTGATGTTGTG+TGG | - | chr3.4:12293246-12293265 | None:intergenic | 50.0% | |
| TATGCTGAAAGAGCTGGGAG+TGG | + | chr3.4:12294602-12294621 | MS.gene85499:CDS | 50.0% | |
| TCCTTGCTGGTCGTCATGAA+GGG | - | chr3.4:12294336-12294355 | None:intergenic | 50.0% | |
| TCTCCTTCGTCAGTGGTGTA+TGG | + | chr3.4:12293363-12293382 | MS.gene85499:CDS | 50.0% | |
| TGACCGAGCTGCCATTCAAA+AGG | - | chr3.4:12294308-12294327 | None:intergenic | 50.0% | |
| TTTGAATGGCAGCTCGGTCA+AGG | + | chr3.4:12294308-12294327 | MS.gene85499:CDS | 50.0% | |
| ! | ATGGATTGAAAGAGTGGGGG+GGG | - | chr3.4:12293518-12293537 | None:intergenic | 50.0% |
| ! | CAGGGCATGGATTGAAAGAG+TGG | - | chr3.4:12293524-12293543 | None:intergenic | 50.0% |
| ! | CATGGATTGAAAGAGTGGGG+GGG | - | chr3.4:12293519-12293538 | None:intergenic | 50.0% |
| ! | GCATGGATTGAAAGAGTGGG+GGG | - | chr3.4:12293520-12293539 | None:intergenic | 50.0% |
| ! | GGCATGGATTGAAAGAGTGG+GGG | - | chr3.4:12293521-12293540 | None:intergenic | 50.0% |
| ! | GGGCATGGATTGAAAGAGTG+GGG | - | chr3.4:12293522-12293541 | None:intergenic | 50.0% |
| !! | ATCATTGCTGCTGGCTCTGA+GGG | + | chr3.4:12293218-12293237 | MS.gene85499:CDS | 50.0% |
| CTCCTTGCTGGTCGTCATGA+AGG | - | chr3.4:12294337-12294356 | None:intergenic | 55.0% | |
| GATCAGTGGAGTTAGACCGG+AGG | - | chr3.4:12293271-12293290 | None:intergenic | 55.0% | |
| TCCCTTCATGACGACCAGCA+AGG | + | chr3.4:12294332-12294351 | MS.gene85499:CDS | 55.0% | |
| TGGATTGAAAGAGTGGGGGG+GGG | - | chr3.4:12293517-12293536 | None:intergenic | 55.0% | |
| !! | CATCATTGCTGCTGGCTCTG+AGG | + | chr3.4:12293217-12293236 | MS.gene85499:CDS | 55.0% |
| ATTGAAAGAGTGGGGGGGGG+GGG | - | chr3.4:12293514-12293533 | None:intergenic | 60.0% | |
| CCACTGACGAAGGAGAGTCG+AGG | - | chr3.4:12293359-12293378 | None:intergenic | 60.0% | |
| CCTCGACTCTCCTTCGTCAG+TGG | + | chr3.4:12293356-12293375 | MS.gene85499:CDS | 60.0% | |
| GAGAGTCGAGGTCCACCTGT+GGG | - | chr3.4:12293347-12293366 | None:intergenic | 60.0% | |
| GATTGAAAGAGTGGGGGGGG+GGG | - | chr3.4:12293515-12293534 | None:intergenic | 60.0% | |
| GGATTGAAAGAGTGGGGGGG+GGG | - | chr3.4:12293516-12293535 | None:intergenic | 60.0% | |
| ! | TCCACCTGTGGGAGAAGCGT+CGG | - | chr3.4:12293336-12293355 | None:intergenic | 60.0% |
| CTCTCCGACGCTTCTCCCAC+AGG | + | chr3.4:12293329-12293348 | MS.gene85499:CDS | 65.0% | |
| GGAGAGTCGAGGTCCACCTG+TGG | - | chr3.4:12293348-12293367 | None:intergenic | 65.0% | |
| TCCGACGCTTCTCCCACAGG+TGG | + | chr3.4:12293332-12293351 | MS.gene85499:CDS | 65.0% | |
| TTGAAAGAGTGGGGGGGGGG+GGG | - | chr3.4:12293513-12293532 | None:intergenic | 65.0% | |
| TGAAAGAGTGGGGGGGGGGG+GGG | - | chr3.4:12293512-12293531 | None:intergenic | 70.0% | |
| AAAGAGTGGGGGGGGGGGGG+GGG | - | chr3.4:12293510-12293529 | None:intergenic | 75.0% | |
| GAAAGAGTGGGGGGGGGGGG+GGG | - | chr3.4:12293511-12293530 | None:intergenic | 75.0% | |
| ! | AAGAGTGGGGGGGGGGGGGG+GGG | - | chr3.4:12293509-12293528 | None:intergenic | 80.0% |
| ! | AGAGTGGGGGGGGGGGGGGG+GGG | - | chr3.4:12293508-12293527 | None:intergenic | 85.0% |
| ! | AGTGGGGGGGGGGGGGGGGG+GGG | - | chr3.4:12293506-12293525 | None:intergenic | 90.0% |
| ! | GAGTGGGGGGGGGGGGGGGG+GGG | - | chr3.4:12293507-12293526 | None:intergenic | 90.0% |
| ! | GTGGGGGGGGGGGGGGGGGG+GGG | - | chr3.4:12293505-12293524 | None:intergenic | 95.0% |
| ! | TGGGGGGGGGGGGGGGGGGG+GGG | - | chr3.4:12293504-12293523 | None:intergenic | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 12293092 | 12294893 | 12293092 | ID=MS.gene85499 |
| chr3.4 | mRNA | 12293092 | 12294893 | 12293092 | ID=MS.gene85499.t1;Parent=MS.gene85499 |
| chr3.4 | exon | 12293092 | 12293478 | 12293092 | ID=MS.gene85499.t1.exon1;Parent=MS.gene85499.t1 |
| chr3.4 | CDS | 12293092 | 12293478 | 12293092 | ID=cds.MS.gene85499.t1;Parent=MS.gene85499.t1 |
| chr3.4 | exon | 12294120 | 12294893 | 12294120 | ID=MS.gene85499.t1.exon2;Parent=MS.gene85499.t1 |
| chr3.4 | CDS | 12294120 | 12294893 | 12294120 | ID=cds.MS.gene85499.t1;Parent=MS.gene85499.t1 |
| Gene Sequence |
| Protein sequence |
