Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85500.t1 | RHN65795.1 | 80.9 | 397 | 75 | 1 | 1 | 397 | 46 | 441 | 2.30E-169 | 605.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85500.t1 | Q9S7T8 | 54.4 | 390 | 173 | 4 | 11 | 396 | 3 | 391 | 1.2e-113 | 411.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85500.t1 | A0A396IPH6 | 80.9 | 397 | 75 | 1 | 1 | 397 | 46 | 441 | 1.6e-169 | 605.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006610 | MS.gene85500 | PPI |
| MS.gene045585 | MS.gene85500 | PPI |
| MS.gene031697 | MS.gene85500 | PPI |
| MS.gene065945 | MS.gene85500 | PPI |
| MS.gene065944 | MS.gene85500 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85500.t1 | MTR_3g018740 | 82.171 | 387 | 68 | 1 | 11 | 397 | 3 | 388 | 0.0 | 620 |
| MS.gene85500.t1 | MTR_3g101010 | 74.160 | 387 | 96 | 3 | 11 | 395 | 3 | 387 | 0.0 | 548 |
| MS.gene85500.t1 | MTR_4g045707 | 69.010 | 384 | 117 | 2 | 12 | 395 | 5 | 386 | 0.0 | 521 |
| MS.gene85500.t1 | MTR_8g027395 | 67.176 | 393 | 125 | 3 | 3 | 395 | 7 | 395 | 0.0 | 515 |
| MS.gene85500.t1 | MTR_2g045980 | 68.542 | 391 | 114 | 4 | 11 | 397 | 3 | 388 | 0.0 | 510 |
| MS.gene85500.t1 | MTR_2g046030 | 67.519 | 391 | 118 | 4 | 11 | 397 | 3 | 388 | 1.24e-180 | 508 |
| MS.gene85500.t1 | MTR_8g027420 | 67.273 | 385 | 111 | 5 | 11 | 395 | 4 | 373 | 1.94e-174 | 491 |
| MS.gene85500.t1 | MTR_3g101030 | 64.573 | 398 | 117 | 6 | 18 | 395 | 34 | 427 | 3.41e-173 | 490 |
| MS.gene85500.t1 | MTR_3g048000 | 64.416 | 385 | 116 | 5 | 14 | 397 | 28 | 392 | 4.70e-172 | 486 |
| MS.gene85500.t1 | MTR_8g461160 | 65.810 | 389 | 125 | 5 | 13 | 395 | 6 | 392 | 2.87e-171 | 484 |
| MS.gene85500.t1 | MTR_3g101180 | 64.051 | 395 | 128 | 5 | 13 | 395 | 6 | 398 | 5.08e-168 | 476 |
| MS.gene85500.t1 | MTR_4g088525 | 66.667 | 363 | 117 | 3 | 33 | 395 | 9 | 367 | 9.97e-168 | 474 |
| MS.gene85500.t1 | MTR_7g050810 | 60.750 | 400 | 146 | 5 | 5 | 395 | 5 | 402 | 3.88e-166 | 471 |
| MS.gene85500.t1 | MTR_7g451890 | 59.900 | 399 | 152 | 4 | 3 | 395 | 4 | 400 | 5.30e-166 | 471 |
| MS.gene85500.t1 | MTR_7g047780 | 60.401 | 399 | 150 | 4 | 3 | 395 | 4 | 400 | 2.48e-164 | 467 |
| MS.gene85500.t1 | MTR_4g088535 | 64.737 | 380 | 114 | 5 | 13 | 392 | 7 | 366 | 7.73e-163 | 462 |
| MS.gene85500.t1 | MTR_7g050750 | 59.949 | 392 | 149 | 4 | 10 | 395 | 5 | 394 | 7.19e-161 | 457 |
| MS.gene85500.t1 | MTR_3g101130 | 61.440 | 389 | 139 | 6 | 12 | 395 | 5 | 387 | 2.01e-159 | 454 |
| MS.gene85500.t1 | MTR_3g101050 | 65.535 | 383 | 109 | 7 | 17 | 395 | 33 | 396 | 1.60e-155 | 444 |
| MS.gene85500.t1 | MTR_3g015620 | 61.224 | 392 | 120 | 5 | 10 | 395 | 13 | 378 | 3.32e-151 | 432 |
| MS.gene85500.t1 | MTR_3g102920 | 57.178 | 411 | 120 | 9 | 4 | 395 | 35 | 408 | 1.74e-142 | 411 |
| MS.gene85500.t1 | MTR_3g018747 | 78.626 | 262 | 40 | 3 | 137 | 397 | 9 | 255 | 4.23e-138 | 394 |
| MS.gene85500.t1 | MTR_3g101190 | 55.065 | 385 | 96 | 4 | 11 | 395 | 3 | 310 | 3.00e-131 | 379 |
| MS.gene85500.t1 | MTR_3g101200 | 51.768 | 396 | 158 | 6 | 5 | 395 | 23 | 390 | 1.95e-119 | 352 |
| MS.gene85500.t1 | MTR_3g100010 | 57.827 | 313 | 83 | 3 | 36 | 315 | 40 | 336 | 5.38e-116 | 342 |
| MS.gene85500.t1 | MTR_3g100995 | 67.194 | 253 | 78 | 3 | 144 | 395 | 14 | 262 | 1.69e-115 | 337 |
| MS.gene85500.t1 | MTR_7g050830 | 53.538 | 325 | 117 | 4 | 3 | 305 | 6 | 318 | 4.91e-111 | 328 |
| MS.gene85500.t1 | MTR_3g015760 | 61.733 | 277 | 98 | 5 | 122 | 395 | 8 | 279 | 1.27e-101 | 303 |
| MS.gene85500.t1 | MTR_3g111160 | 69.196 | 224 | 57 | 4 | 178 | 395 | 1 | 218 | 3.53e-97 | 289 |
| MS.gene85500.t1 | MTR_3g114310 | 42.065 | 397 | 205 | 10 | 14 | 394 | 20 | 407 | 7.92e-90 | 277 |
| MS.gene85500.t1 | MTR_3g100520 | 64.384 | 219 | 65 | 4 | 178 | 395 | 1 | 207 | 2.18e-89 | 269 |
| MS.gene85500.t1 | MTR_2g046410 | 66.827 | 208 | 63 | 3 | 194 | 397 | 144 | 349 | 6.81e-85 | 262 |
| MS.gene85500.t1 | MTR_3g101110 | 59.494 | 237 | 64 | 4 | 140 | 371 | 71 | 280 | 3.55e-82 | 253 |
| MS.gene85500.t1 | MTR_3g099970 | 60.591 | 203 | 61 | 3 | 132 | 334 | 15 | 198 | 7.93e-77 | 236 |
| MS.gene85500.t1 | MTR_3g111150 | 61.017 | 177 | 45 | 2 | 15 | 191 | 1 | 153 | 6.14e-66 | 207 |
| MS.gene85500.t1 | MTR_3g101150 | 64.780 | 159 | 48 | 4 | 243 | 395 | 1 | 157 | 3.09e-58 | 187 |
| MS.gene85500.t1 | MTR_3g101020 | 56.452 | 186 | 52 | 3 | 211 | 395 | 1 | 158 | 3.30e-58 | 187 |
| MS.gene85500.t1 | MTR_3g102870 | 59.756 | 164 | 59 | 3 | 202 | 360 | 3 | 164 | 4.49e-58 | 187 |
| MS.gene85500.t1 | MTR_3g100990 | 71.429 | 126 | 36 | 0 | 12 | 137 | 4 | 129 | 2.32e-53 | 185 |
| MS.gene85500.t1 | MTR_4g093550 | 67.045 | 88 | 29 | 0 | 9 | 96 | 2 | 89 | 2.85e-32 | 117 |
| MS.gene85500.t1 | MTR_6g046890 | 73.438 | 64 | 17 | 0 | 30 | 93 | 16 | 79 | 8.74e-25 | 99.0 |
| MS.gene85500.t1 | MTR_3g101140 | 56.757 | 74 | 28 | 2 | 325 | 395 | 42 | 114 | 9.84e-15 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85500.t1 | AT1G47710 | 54.359 | 390 | 173 | 4 | 11 | 396 | 3 | 391 | 1.67e-147 | 424 |
| MS.gene85500.t1 | AT1G47710 | 54.359 | 390 | 173 | 4 | 11 | 396 | 30 | 418 | 1.25e-146 | 422 |
| MS.gene85500.t1 | AT2G25240 | 50.900 | 389 | 177 | 8 | 11 | 394 | 3 | 382 | 2.23e-126 | 370 |
| MS.gene85500.t1 | AT3G45220 | 48.990 | 396 | 182 | 7 | 11 | 394 | 3 | 390 | 1.16e-125 | 368 |
| MS.gene85500.t1 | AT2G26390 | 48.990 | 396 | 178 | 8 | 11 | 394 | 3 | 386 | 4.33e-122 | 359 |
| MS.gene85500.t1 | AT2G14540 | 43.250 | 400 | 192 | 9 | 4 | 394 | 24 | 397 | 4.43e-98 | 298 |
| MS.gene85500.t1 | AT1G62170 | 41.282 | 390 | 197 | 6 | 13 | 394 | 66 | 431 | 1.53e-96 | 295 |
| MS.gene85500.t1 | AT1G64030 | 41.117 | 394 | 197 | 7 | 11 | 394 | 3 | 371 | 2.67e-95 | 290 |
| MS.gene85500.t1 | AT2G35580 | 41.730 | 393 | 182 | 11 | 11 | 394 | 17 | 371 | 8.60e-91 | 278 |
| MS.gene85500.t1 | AT1G62170 | 38.061 | 423 | 197 | 7 | 13 | 394 | 66 | 464 | 2.52e-89 | 278 |
| MS.gene85500.t1 | AT1G64010 | 47.727 | 220 | 87 | 5 | 178 | 394 | 1 | 195 | 4.28e-59 | 191 |
| MS.gene85500.t1 | AT1G64010 | 46.341 | 205 | 82 | 5 | 193 | 394 | 2 | 181 | 1.02e-50 | 169 |
| MS.gene85500.t1 | AT1G62160 | 39.000 | 200 | 94 | 6 | 200 | 394 | 42 | 218 | 4.06e-34 | 126 |
| MS.gene85500.t1 | AT1G63280 | 51.695 | 118 | 53 | 2 | 134 | 249 | 5 | 120 | 3.57e-32 | 118 |
| MS.gene85500.t1 | AT1G51330 | 57.143 | 91 | 39 | 0 | 140 | 230 | 34 | 124 | 6.70e-27 | 106 |
| MS.gene85500.t1 | AT1G64020 | 34.821 | 112 | 70 | 3 | 18 | 127 | 10 | 120 | 2.56e-14 | 69.7 |
Find 75 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTAATGCACTCTACTTTAA+AGG | 0.124495 | 3.4:+12288094 | MS.gene85500:CDS |
| TGCTTAAAGAAGTGAATTTA+TGG | 0.206341 | 3.4:+12287993 | MS.gene85500:CDS |
| GAGGAAGAAGTTCTTTAATA+AGG | 0.287252 | 3.4:-12288036 | None:intergenic |
| TTATCTTTGCCTTTCTTATA+CGG | 0.304297 | 3.4:-12288262 | None:intergenic |
| GGACAAAGTAGATTTATAAT+TGG | 0.309459 | 3.4:-12287424 | None:intergenic |
| CCTCGACTCTCCTTCGTAAA+TGG | 0.330631 | 3.4:+12287345 | MS.gene85500:CDS |
| AATTCACCTACTTCTACTTT+AGG | 0.342079 | 3.4:-12288397 | None:intergenic |
| GTTGATTCATCTACTGATCT+TGG | 0.347636 | 3.4:-12288058 | None:intergenic |
| GTTGAGATGATCTGTGGATT+TGG | 0.358590 | 3.4:-12287265 | None:intergenic |
| AAAAGATGGCTTGTCGGCTT+TGG | 0.374648 | 3.4:+12288321 | MS.gene85500:CDS |
| TGAAGGAAGGTTGAAGAGAA+AGG | 0.378765 | 3.4:-12287386 | None:intergenic |
| AAAGAAGAACAACGATTCTT+CGG | 0.387616 | 3.4:+12287070 | MS.gene85500:CDS |
| TCTCCTTCGTAAATGGTGTA+TGG | 0.396928 | 3.4:+12287352 | MS.gene85500:CDS |
| ACTGAAATAATTCTCTTTGT+CGG | 0.397067 | 3.4:+12288715 | MS.gene85500:CDS |
| TTCCTTCCAAATGCAAAAGA+TGG | 0.403729 | 3.4:+12288307 | MS.gene85500:CDS |
| GCTTAAAGAAGTGAATTTAT+GGG | 0.413845 | 3.4:+12287994 | MS.gene85500:CDS |
| TGCCGAGGGAAACATTTGTT+TGG | 0.416643 | 3.4:-12287107 | None:intergenic |
| TTCTGTCGAGAACAGATGTT+TGG | 0.430392 | 3.4:-12287133 | None:intergenic |
| CTCTCGGATGCTGCTCCCAC+AGG | 0.433983 | 3.4:+12287318 | MS.gene85500:CDS |
| AAGAAGAACAACGATTCTTC+GGG | 0.443253 | 3.4:+12287071 | MS.gene85500:CDS |
| GCTTGTTTCTGTCGTGCTCT+CGG | 0.446945 | 3.4:+12287302 | MS.gene85500:CDS |
| GAAGGAAGGTTGAAGAGAAA+GGG | 0.450222 | 3.4:-12287385 | None:intergenic |
| GTAGAGTGCATTAGTAAAGA+TGG | 0.454154 | 3.4:-12288086 | None:intergenic |
| CAATGATACTTAGCACAACT+TGG | 0.455852 | 3.4:-12287191 | None:intergenic |
| TTCATTGAAGTAAATGAAGA+AGG | 0.457204 | 3.4:+12288580 | MS.gene85500:CDS |
| CTCTGTTGATTTCATGACCA+AGG | 0.457766 | 3.4:+12287446 | MS.gene85500:CDS |
| CTTCGTCTTCCGTATAAGAA+AGG | 0.461270 | 3.4:+12288253 | MS.gene85500:CDS |
| GAAGCTGCTGCAGCTAGTGC+TGG | 0.463886 | 3.4:+12288607 | MS.gene85500:CDS |
| CATCTCCTCGCTGGTCATGA+AGG | 0.481726 | 3.4:-12288197 | None:intergenic |
| CTCCTTCGTAAATGGTGTAT+GGG | 0.487373 | 3.4:+12287353 | MS.gene85500:CDS |
| ATGGTCGACTCTTCTCTTGT+GGG | 0.489235 | 3.4:+12288520 | MS.gene85500:CDS |
| CGTCTTCCTAAAGTAGAAGT+AGG | 0.495565 | 3.4:+12288391 | MS.gene85500:CDS |
| AAATGCAAAAGATGGCTTGT+CGG | 0.500590 | 3.4:+12288315 | MS.gene85500:CDS |
| CTTGTCGGCTTTGGTTAAGA+AGG | 0.503520 | 3.4:+12288330 | MS.gene85500:CDS |
| TCTCTAATTAGAAATAAGAA+AGG | 0.509129 | 3.4:-12288685 | None:intergenic |
| CACTCTACTTTAAAGGAGCA+TGG | 0.514338 | 3.4:+12288101 | MS.gene85500:CDS |
| GTGCTAAGTATCATTGCTGC+TGG | 0.522173 | 3.4:+12287198 | MS.gene85500:CDS |
| AATGGTCGACTCTTCTCTTG+TGG | 0.528439 | 3.4:+12288519 | MS.gene85500:CDS |
| TCTGAATGGCAGCTCGGTCA+AGG | 0.529185 | 3.4:+12288171 | MS.gene85500:CDS |
| CTCTAATTAGAAATAAGAAA+GGG | 0.536391 | 3.4:-12288684 | None:intergenic |
| TCTGATATGCTGAAAGAGCT+AGG | 0.538261 | 3.4:+12288460 | MS.gene85500:CDS |
| TCGGATGCTGCTCCCACAGG+TGG | 0.539122 | 3.4:+12287321 | MS.gene85500:CDS |
| TATCATTGCTGCTGGTTGTG+AGG | 0.540874 | 3.4:+12287206 | MS.gene85500:CDS |
| ATCATTGCTGCTGGTTGTGA+GGG | 0.541244 | 3.4:+12287207 | MS.gene85500:CDS |
| GTCAAACCTCCACGAGTGAA+AGG | 0.545644 | 3.4:-12288493 | None:intergenic |
| AATAAACTGCATCTCCTCGC+TGG | 0.546179 | 3.4:-12288206 | None:intergenic |
| ATCTCCTCGCTGGTCATGAA+GGG | 0.557796 | 3.4:-12288196 | None:intergenic |
| GAAATATATTAGAAACAGAA+AGG | 0.558448 | 3.4:-12288549 | None:intergenic |
| TCACCTTCTGAATGGCAGCT+CGG | 0.561657 | 3.4:+12288165 | MS.gene85500:CDS |
| TAGAGTGCATTAGTAAAGAT+GGG | 0.562701 | 3.4:-12288085 | None:intergenic |
| TGCATTAGTAAAGATGGGCC+TGG | 0.564009 | 3.4:-12288080 | None:intergenic |
| TGCTAAGATCACTCATGAAG+AGG | 0.566263 | 3.4:-12288751 | None:intergenic |
| GATTCATCTACTGATCTTGG+AGG | 0.568404 | 3.4:-12288055 | None:intergenic |
| GAGGGAAACATTTGTTTGGT+TGG | 0.569951 | 3.4:-12287103 | None:intergenic |
| AACCAAACAAATGTTTCCCT+CGG | 0.575261 | 3.4:+12287105 | MS.gene85500:CDS |
| GTCGAGAAGCTGTTGTTGTG+TGG | 0.586119 | 3.4:-12287232 | None:intergenic |
| AACAAATGTTTCCCTCGGCA+TGG | 0.592617 | 3.4:+12287110 | MS.gene85500:CDS |
| TGACCGAGCTGCCATTCAGA+AGG | 0.594617 | 3.4:-12288168 | None:intergenic |
| ACAGATGTTTGGCCATGCCG+AGG | 0.599139 | 3.4:-12287122 | None:intergenic |
| CAGATGTTTGGCCATGCCGA+GGG | 0.601831 | 3.4:-12287121 | None:intergenic |
| TCGAGAAGCTGTTGTTGTGT+GGG | 0.605173 | 3.4:-12287231 | None:intergenic |
| AGCACAACTTGGATTGACAA+TGG | 0.620415 | 3.4:-12287180 | None:intergenic |
| CTTTAGGAAGACGAAACTTG+TGG | 0.629899 | 3.4:-12288381 | None:intergenic |
| GAGAGTCGAGGTCCACCTGT+GGG | 0.635303 | 3.4:-12287333 | None:intergenic |
| AAAATGTACATAGAGAATTG+AGG | 0.639607 | 3.4:-12288286 | None:intergenic |
| GGAGAGTCGAGGTCCACCTG+TGG | 0.645915 | 3.4:-12287334 | None:intergenic |
| AACCCATACACCATTTACGA+AGG | 0.656132 | 3.4:-12287355 | None:intergenic |
| GAGATAGTTGAGATGATCTG+TGG | 0.676063 | 3.4:-12287271 | None:intergenic |
| GATCTGTGGATTTGGACTCG+AGG | 0.679726 | 3.4:-12287257 | None:intergenic |
| CACGACAGAAACAAGCTGAG+AGG | 0.687540 | 3.4:-12287295 | None:intergenic |
| GATCAGTAGATGAATCAACC+AGG | 0.690543 | 3.4:+12288062 | MS.gene85500:CDS |
| GGCTCCCTTCATGACCAGCG+AGG | 0.705742 | 3.4:+12288192 | MS.gene85500:CDS |
| TATGCTGAAAGAGCTAGGAG+TGG | 0.709518 | 3.4:+12288465 | MS.gene85500:CDS |
| CCATTTACGAAGGAGAGTCG+AGG | 0.724675 | 3.4:-12287345 | None:intergenic |
| CTTGGTCATGAAATCAACAG+AGG | 0.726746 | 3.4:-12287445 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTCATGTTAATTAATTAA+AGG | + | chr3.4:12287552-12287571 | MS.gene85500:intron | 10.0% |
| !! | TTTCATGTTAATTAATTAAA+GGG | + | chr3.4:12287553-12287572 | MS.gene85500:intron | 10.0% |
| !!! | ATTTGTTTTTATTTTATTTG+AGG | - | chr3.4:12287522-12287541 | None:intergenic | 10.0% |
| !!! | TTTGTTTTTATTTTATTTGA+GGG | - | chr3.4:12287521-12287540 | None:intergenic | 10.0% |
| !!! | ATTCAAATAACTGATTTTTA+TGG | + | chr3.4:12287952-12287971 | MS.gene85500:intron | 15.0% |
| !! | CTCTAATTAGAAATAAGAAA+GGG | - | chr3.4:12288687-12288706 | None:intergenic | 20.0% |
| !! | GAAATATATTAGAAACAGAA+AGG | - | chr3.4:12288552-12288571 | None:intergenic | 20.0% |
| !! | TCTCTAATTAGAAATAAGAA+AGG | - | chr3.4:12288688-12288707 | None:intergenic | 20.0% |
| !!! | TCAAATGAAATTTTGAATCT+TGG | - | chr3.4:12288430-12288449 | None:intergenic | 20.0% |
| ! | AAAATGTACATAGAGAATTG+AGG | - | chr3.4:12288289-12288308 | None:intergenic | 25.0% |
| ! | ACTGAAATAATTCTCTTTGT+CGG | + | chr3.4:12288715-12288734 | MS.gene85500:CDS | 25.0% |
| ! | GCTTAAAGAAGTGAATTTAT+GGG | + | chr3.4:12287994-12288013 | MS.gene85500:CDS | 25.0% |
| ! | GGACAAAGTAGATTTATAAT+TGG | - | chr3.4:12287427-12287446 | None:intergenic | 25.0% |
| ! | TATTACGTTGCTAAATTAGT+TGG | - | chr3.4:12287864-12287883 | None:intergenic | 25.0% |
| ! | TGCTTAAAGAAGTGAATTTA+TGG | + | chr3.4:12287993-12288012 | MS.gene85500:CDS | 25.0% |
| ! | TTATCTTTGCCTTTCTTATA+CGG | - | chr3.4:12288265-12288284 | None:intergenic | 25.0% |
| ! | TTCATTGAAGTAAATGAAGA+AGG | + | chr3.4:12288580-12288599 | MS.gene85500:CDS | 25.0% |
| ! | TTCTTTAATCAGTGTAGAAT+TGG | - | chr3.4:12287727-12287746 | None:intergenic | 25.0% |
| AAAGAAGAACAACGATTCTT+CGG | + | chr3.4:12287070-12287089 | MS.gene85500:CDS | 30.0% | |
| AATTCACCTACTTCTACTTT+AGG | - | chr3.4:12288400-12288419 | None:intergenic | 30.0% | |
| ACAGATTGCTGTGAAAAAAA+GGG | - | chr3.4:12287488-12287507 | None:intergenic | 30.0% | |
| ACTAATGCACTCTACTTTAA+AGG | + | chr3.4:12288094-12288113 | MS.gene85500:CDS | 30.0% | |
| CCAACTAACCAGAAAATTTA+GGG | - | chr3.4:12287607-12287626 | None:intergenic | 30.0% | |
| GAGGAAGAAGTTCTTTAATA+AGG | - | chr3.4:12288039-12288058 | None:intergenic | 30.0% | |
| GATAGTAAAGTTCATGACTT+TGG | + | chr3.4:12287695-12287714 | MS.gene85500:intron | 30.0% | |
| GGATGCTAGAAAACAATAAA+GGG | - | chr3.4:12287843-12287862 | None:intergenic | 30.0% | |
| TAGAGTGCATTAGTAAAGAT+GGG | - | chr3.4:12288088-12288107 | None:intergenic | 30.0% | |
| TCCAACTAACCAGAAAATTT+AGG | - | chr3.4:12287608-12287627 | None:intergenic | 30.0% | |
| TGACGAAACACTTTGTTAAA+TGG | + | chr3.4:12287766-12287785 | MS.gene85500:intron | 30.0% | |
| TGGATGCTAGAAAACAATAA+AGG | - | chr3.4:12287844-12287863 | None:intergenic | 30.0% | |
| ! | ACTTTATTTCAGCACAAAGT+AGG | + | chr3.4:12287652-12287671 | MS.gene85500:intron | 30.0% |
| ! | CAGAAAATTTAGGGTATACT+AGG | - | chr3.4:12287598-12287617 | None:intergenic | 30.0% |
| ! | CTAGTATACCCTAAATTTTC+TGG | + | chr3.4:12287596-12287615 | MS.gene85500:intron | 30.0% |
| ! | CTGAAATAAAGTAGAAGCAT+TGG | - | chr3.4:12287644-12287663 | None:intergenic | 30.0% |
| ! | CTTTATTTCAGCACAAAGTA+GGG | + | chr3.4:12287653-12287672 | MS.gene85500:intron | 30.0% |
| ! | TATGATTTTCACCTTCTGAA+TGG | + | chr3.4:12288157-12288176 | MS.gene85500:CDS | 30.0% |
| AACCAAACAAATGTTTCCCT+CGG | + | chr3.4:12287105-12287124 | MS.gene85500:CDS | 35.0% | |
| AAGAAGAACAACGATTCTTC+GGG | + | chr3.4:12287071-12287090 | MS.gene85500:CDS | 35.0% | |
| CAATGATACTTAGCACAACT+TGG | - | chr3.4:12287194-12287213 | None:intergenic | 35.0% | |
| GACAGATTGCTGTGAAAAAA+AGG | - | chr3.4:12287489-12287508 | None:intergenic | 35.0% | |
| GTAGAGTGCATTAGTAAAGA+TGG | - | chr3.4:12288089-12288108 | None:intergenic | 35.0% | |
| TGCTAGAAAACAATAAAGGG+AGG | - | chr3.4:12287840-12287859 | None:intergenic | 35.0% | |
| TTCCTTCCAAATGCAAAAGA+TGG | + | chr3.4:12288307-12288326 | MS.gene85500:CDS | 35.0% | |
| ! | AAATGCAAAAGATGGCTTGT+CGG | + | chr3.4:12288315-12288334 | MS.gene85500:CDS | 35.0% |
| ! | GGAAGACAAGATTCTTTTGA+AGG | - | chr3.4:12287406-12287425 | None:intergenic | 35.0% |
| ! | GTTGATTCATCTACTGATCT+TGG | - | chr3.4:12288061-12288080 | None:intergenic | 35.0% |
| ! | TAACAAAGTGTTTCGTCACA+TGG | - | chr3.4:12287764-12287783 | None:intergenic | 35.0% |
| !! | GACAAGATTCTTTTGAAGGA+AGG | - | chr3.4:12287402-12287421 | None:intergenic | 35.0% |
| !!! | CCCTAAATTTTCTGGTTAGT+TGG | + | chr3.4:12287604-12287623 | MS.gene85500:intron | 35.0% |
| AACCCATACACCATTTACGA+AGG | - | chr3.4:12287358-12287377 | None:intergenic | 40.0% | |
| AGCACAACTTGGATTGACAA+TGG | - | chr3.4:12287183-12287202 | None:intergenic | 40.0% | |
| CGTCTTCCTAAAGTAGAAGT+AGG | + | chr3.4:12288391-12288410 | MS.gene85500:CDS | 40.0% | |
| CTCCTTCGTAAATGGTGTAT+GGG | + | chr3.4:12287353-12287372 | MS.gene85500:CDS | 40.0% | |
| CTTCGTCTTCCGTATAAGAA+AGG | + | chr3.4:12288253-12288272 | MS.gene85500:CDS | 40.0% | |
| CTTGGTCATGAAATCAACAG+AGG | - | chr3.4:12287448-12287467 | None:intergenic | 40.0% | |
| GAAGGAAGGTTGAAGAGAAA+GGG | - | chr3.4:12287388-12287407 | None:intergenic | 40.0% | |
| GAGATAGTTGAGATGATCTG+TGG | - | chr3.4:12287274-12287293 | None:intergenic | 40.0% | |
| GAGATATGTACCACAAACCT+TGG | - | chr3.4:12287466-12287485 | None:intergenic | 40.0% | |
| GAGGGAAACATTTGTTTGGT+TGG | - | chr3.4:12287106-12287125 | None:intergenic | 40.0% | |
| GATCAGTAGATGAATCAACC+AGG | + | chr3.4:12288062-12288081 | MS.gene85500:CDS | 40.0% | |
| GATTCATCTACTGATCTTGG+AGG | - | chr3.4:12288058-12288077 | None:intergenic | 40.0% | |
| GATTTCATGACCAAGGTTTG+TGG | + | chr3.4:12287453-12287472 | MS.gene85500:intron | 40.0% | |
| GTTGAGATGATCTGTGGATT+TGG | - | chr3.4:12287268-12287287 | None:intergenic | 40.0% | |
| TCGTGGAGGTTTGACAAAAA+TGG | + | chr3.4:12288501-12288520 | MS.gene85500:CDS | 40.0% | |
| TCTCCTTCGTAAATGGTGTA+TGG | + | chr3.4:12287352-12287371 | MS.gene85500:CDS | 40.0% | |
| TCTGATATGCTGAAAGAGCT+AGG | + | chr3.4:12288460-12288479 | MS.gene85500:CDS | 40.0% | |
| TGAAGGAAGGTTGAAGAGAA+AGG | - | chr3.4:12287389-12287408 | None:intergenic | 40.0% | |
| TTCTGTCGAGAACAGATGTT+TGG | - | chr3.4:12287136-12287155 | None:intergenic | 40.0% | |
| ! | AGCCATCTTTTGCATTTGGA+AGG | - | chr3.4:12288312-12288331 | None:intergenic | 40.0% |
| ! | CACTCTACTTTAAAGGAGCA+TGG | + | chr3.4:12288101-12288120 | MS.gene85500:CDS | 40.0% |
| ! | CTTTAGGAAGACGAAACTTG+TGG | - | chr3.4:12288384-12288403 | None:intergenic | 40.0% |
| ! | GACAAGCCATCTTTTGCATT+TGG | - | chr3.4:12288316-12288335 | None:intergenic | 40.0% |
| !! | CTCTGTTGATTTCATGACCA+AGG | + | chr3.4:12287446-12287465 | MS.gene85500:CDS | 40.0% |
| AACAAATGTTTCCCTCGGCA+TGG | + | chr3.4:12287110-12287129 | MS.gene85500:CDS | 45.0% | |
| AATAAACTGCATCTCCTCGC+TGG | - | chr3.4:12288209-12288228 | None:intergenic | 45.0% | |
| GTGCTAAGTATCATTGCTGC+TGG | + | chr3.4:12287198-12287217 | MS.gene85500:CDS | 45.0% | |
| TATGCTGAAAGAGCTAGGAG+TGG | + | chr3.4:12288465-12288484 | MS.gene85500:CDS | 45.0% | |
| TCGAGAAGCTGTTGTTGTGT+GGG | - | chr3.4:12287234-12287253 | None:intergenic | 45.0% | |
| TGCATTAGTAAAGATGGGCC+TGG | - | chr3.4:12288083-12288102 | None:intergenic | 45.0% | |
| TGCCGAGGGAAACATTTGTT+TGG | - | chr3.4:12287110-12287129 | None:intergenic | 45.0% | |
| TGGGCTGAAAAAGAGACGAA+TGG | + | chr3.4:12288013-12288032 | MS.gene85500:CDS | 45.0% | |
| TTCGTCACATGGCACATACA+TGG | - | chr3.4:12287753-12287772 | None:intergenic | 45.0% | |
| ! | AATGGTCGACTCTTCTCTTG+TGG | + | chr3.4:12288519-12288538 | MS.gene85500:CDS | 45.0% |
| ! | ATCATTGCTGCTGGTTGTGA+GGG | + | chr3.4:12287207-12287226 | MS.gene85500:CDS | 45.0% |
| ! | ATGGTCGACTCTTCTCTTGT+GGG | + | chr3.4:12288520-12288539 | MS.gene85500:CDS | 45.0% |
| ! | GTTTTACCTTTCACTCGTGG+AGG | + | chr3.4:12288487-12288506 | MS.gene85500:CDS | 45.0% |
| ! | TATCATTGCTGCTGGTTGTG+AGG | + | chr3.4:12287206-12287225 | MS.gene85500:CDS | 45.0% |
| !! | AAAAGATGGCTTGTCGGCTT+TGG | + | chr3.4:12288321-12288340 | MS.gene85500:CDS | 45.0% |
| !! | CTTGTCGGCTTTGGTTAAGA+AGG | + | chr3.4:12288330-12288349 | MS.gene85500:CDS | 45.0% |
| !! | GTGGTTTTACCTTTCACTCG+TGG | + | chr3.4:12288484-12288503 | MS.gene85500:CDS | 45.0% |
| ATCTCCTCGCTGGTCATGAA+GGG | - | chr3.4:12288199-12288218 | None:intergenic | 50.0% | |
| CACGACAGAAACAAGCTGAG+AGG | - | chr3.4:12287298-12287317 | None:intergenic | 50.0% | |
| CCATTTACGAAGGAGAGTCG+AGG | - | chr3.4:12287348-12287367 | None:intergenic | 50.0% | |
| CCTCGACTCTCCTTCGTAAA+TGG | + | chr3.4:12287345-12287364 | MS.gene85500:CDS | 50.0% | |
| GATCTGTGGATTTGGACTCG+AGG | - | chr3.4:12287260-12287279 | None:intergenic | 50.0% | |
| GTCAAACCTCCACGAGTGAA+AGG | - | chr3.4:12288496-12288515 | None:intergenic | 50.0% | |
| GTCGAGAAGCTGTTGTTGTG+TGG | - | chr3.4:12287235-12287254 | None:intergenic | 50.0% | |
| TCACCTTCTGAATGGCAGCT+CGG | + | chr3.4:12288165-12288184 | MS.gene85500:CDS | 50.0% | |
| !! | GCTTGTTTCTGTCGTGCTCT+CGG | + | chr3.4:12287302-12287321 | MS.gene85500:CDS | 50.0% |
| ACAGATGTTTGGCCATGCCG+AGG | - | chr3.4:12287125-12287144 | None:intergenic | 55.0% | |
| CAGATGTTTGGCCATGCCGA+GGG | - | chr3.4:12287124-12287143 | None:intergenic | 55.0% | |
| CATCTCCTCGCTGGTCATGA+AGG | - | chr3.4:12288200-12288219 | None:intergenic | 55.0% | |
| TCTGAATGGCAGCTCGGTCA+AGG | + | chr3.4:12288171-12288190 | MS.gene85500:CDS | 55.0% | |
| TGACCGAGCTGCCATTCAGA+AGG | - | chr3.4:12288171-12288190 | None:intergenic | 55.0% | |
| GAAGCTGCTGCAGCTAGTGC+TGG | + | chr3.4:12288607-12288626 | MS.gene85500:CDS | 60.0% | |
| GAGAGTCGAGGTCCACCTGT+GGG | - | chr3.4:12287336-12287355 | None:intergenic | 60.0% | |
| CTCTCGGATGCTGCTCCCAC+AGG | + | chr3.4:12287318-12287337 | MS.gene85500:CDS | 65.0% | |
| GGAGAGTCGAGGTCCACCTG+TGG | - | chr3.4:12287337-12287356 | None:intergenic | 65.0% | |
| GGCTCCCTTCATGACCAGCG+AGG | + | chr3.4:12288192-12288211 | MS.gene85500:CDS | 65.0% | |
| TCGGATGCTGCTCCCACAGG+TGG | + | chr3.4:12287321-12287340 | MS.gene85500:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 12287057 | 12288765 | 12287057 | ID=MS.gene85500 |
| chr3.4 | mRNA | 12287057 | 12288765 | 12287057 | ID=MS.gene85500.t1;Parent=MS.gene85500 |
| chr3.4 | exon | 12287057 | 12287467 | 12287057 | ID=MS.gene85500.t1.exon1;Parent=MS.gene85500.t1 |
| chr3.4 | CDS | 12287057 | 12287467 | 12287057 | ID=cds.MS.gene85500.t1;Parent=MS.gene85500.t1 |
| chr3.4 | exon | 12287983 | 12288765 | 12287983 | ID=MS.gene85500.t1.exon2;Parent=MS.gene85500.t1 |
| chr3.4 | CDS | 12287983 | 12288765 | 12287983 | ID=cds.MS.gene85500.t1;Parent=MS.gene85500.t1 |
| Gene Sequence |
| Protein sequence |
