Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85502.t1 | RHN65795.1 | 85.6 | 389 | 53 | 2 | 1 | 387 | 54 | 441 | 4.80E-180 | 640.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85502.t1 | Q9S7T8 | 53.5 | 391 | 175 | 4 | 1 | 385 | 1 | 390 | 2.1e-115 | 417.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85502.t1 | G7IW05 | 85.6 | 389 | 53 | 2 | 1 | 387 | 1 | 388 | 3.4e-180 | 640.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene85502 | MS.gene065944 | PPI |
| MS.gene85502 | MS.gene045585 | PPI |
| MS.gene006610 | MS.gene85502 | PPI |
| MS.gene031697 | MS.gene85502 | PPI |
| MS.gene065945 | MS.gene85502 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85502.t1 | MTR_3g018740 | 85.604 | 389 | 53 | 2 | 1 | 387 | 1 | 388 | 0.0 | 660 |
| MS.gene85502.t1 | MTR_3g101010 | 73.454 | 388 | 99 | 2 | 1 | 385 | 1 | 387 | 0.0 | 560 |
| MS.gene85502.t1 | MTR_4g045707 | 70.235 | 383 | 112 | 2 | 4 | 385 | 5 | 386 | 0.0 | 532 |
| MS.gene85502.t1 | MTR_8g027395 | 69.610 | 385 | 111 | 3 | 3 | 385 | 15 | 395 | 0.0 | 531 |
| MS.gene85502.t1 | MTR_2g045980 | 69.797 | 394 | 106 | 5 | 1 | 387 | 1 | 388 | 0.0 | 527 |
| MS.gene85502.t1 | MTR_2g046030 | 68.274 | 394 | 112 | 5 | 1 | 387 | 1 | 388 | 0.0 | 520 |
| MS.gene85502.t1 | MTR_3g101030 | 66.247 | 397 | 110 | 6 | 10 | 385 | 34 | 427 | 5.58e-180 | 507 |
| MS.gene85502.t1 | MTR_3g048000 | 66.404 | 381 | 109 | 3 | 6 | 385 | 28 | 390 | 1.39e-179 | 504 |
| MS.gene85502.t1 | MTR_8g461160 | 67.179 | 390 | 120 | 4 | 5 | 387 | 6 | 394 | 2.69e-179 | 504 |
| MS.gene85502.t1 | MTR_3g101180 | 65.500 | 400 | 121 | 8 | 1 | 385 | 1 | 398 | 2.66e-178 | 501 |
| MS.gene85502.t1 | MTR_8g027420 | 67.363 | 383 | 112 | 3 | 3 | 385 | 4 | 373 | 1.44e-177 | 499 |
| MS.gene85502.t1 | MTR_4g088525 | 68.232 | 362 | 113 | 2 | 24 | 385 | 8 | 367 | 1.02e-174 | 491 |
| MS.gene85502.t1 | MTR_4g088535 | 67.460 | 378 | 105 | 3 | 5 | 382 | 7 | 366 | 1.34e-172 | 486 |
| MS.gene85502.t1 | MTR_3g101130 | 64.175 | 388 | 128 | 4 | 4 | 385 | 5 | 387 | 7.53e-172 | 485 |
| MS.gene85502.t1 | MTR_7g451890 | 62.982 | 389 | 136 | 3 | 5 | 386 | 14 | 401 | 4.40e-171 | 483 |
| MS.gene85502.t1 | MTR_7g050750 | 62.660 | 391 | 138 | 3 | 3 | 386 | 6 | 395 | 1.63e-170 | 482 |
| MS.gene85502.t1 | MTR_7g047780 | 63.239 | 389 | 135 | 4 | 5 | 386 | 14 | 401 | 1.21e-169 | 480 |
| MS.gene85502.t1 | MTR_7g050810 | 62.821 | 390 | 135 | 4 | 5 | 386 | 16 | 403 | 3.59e-168 | 476 |
| MS.gene85502.t1 | MTR_3g101050 | 63.990 | 386 | 110 | 6 | 8 | 385 | 32 | 396 | 6.53e-160 | 455 |
| MS.gene85502.t1 | MTR_3g015620 | 61.697 | 389 | 117 | 4 | 5 | 386 | 16 | 379 | 1.35e-156 | 446 |
| MS.gene85502.t1 | MTR_3g018747 | 81.609 | 261 | 32 | 2 | 129 | 387 | 9 | 255 | 2.74e-147 | 417 |
| MS.gene85502.t1 | MTR_3g102920 | 56.853 | 394 | 121 | 7 | 5 | 385 | 51 | 408 | 6.28e-139 | 402 |
| MS.gene85502.t1 | MTR_3g101190 | 56.623 | 385 | 92 | 6 | 1 | 385 | 1 | 310 | 1.07e-136 | 393 |
| MS.gene85502.t1 | MTR_3g101200 | 54.381 | 388 | 146 | 5 | 3 | 385 | 29 | 390 | 1.06e-127 | 373 |
| MS.gene85502.t1 | MTR_3g100995 | 66.797 | 256 | 80 | 2 | 133 | 386 | 11 | 263 | 2.26e-120 | 349 |
| MS.gene85502.t1 | MTR_3g100010 | 57.692 | 312 | 84 | 3 | 28 | 306 | 40 | 336 | 8.62e-117 | 343 |
| MS.gene85502.t1 | MTR_7g050830 | 56.688 | 314 | 103 | 3 | 5 | 296 | 16 | 318 | 2.03e-116 | 342 |
| MS.gene85502.t1 | MTR_3g015760 | 64.015 | 264 | 85 | 4 | 128 | 386 | 22 | 280 | 7.64e-106 | 313 |
| MS.gene85502.t1 | MTR_3g111160 | 71.233 | 219 | 59 | 3 | 170 | 385 | 1 | 218 | 1.06e-102 | 303 |
| MS.gene85502.t1 | MTR_3g114310 | 42.748 | 393 | 206 | 10 | 6 | 384 | 20 | 407 | 2.78e-92 | 283 |
| MS.gene85502.t1 | MTR_3g100520 | 62.673 | 217 | 70 | 3 | 170 | 385 | 1 | 207 | 2.47e-87 | 263 |
| MS.gene85502.t1 | MTR_2g046410 | 66.029 | 209 | 61 | 4 | 186 | 387 | 144 | 349 | 1.06e-85 | 264 |
| MS.gene85502.t1 | MTR_3g101110 | 57.741 | 239 | 69 | 3 | 129 | 361 | 68 | 280 | 2.10e-85 | 261 |
| MS.gene85502.t1 | MTR_3g099970 | 64.039 | 203 | 55 | 3 | 123 | 325 | 14 | 198 | 2.05e-83 | 253 |
| MS.gene85502.t1 | MTR_3g111150 | 63.842 | 177 | 40 | 1 | 7 | 183 | 1 | 153 | 9.84e-69 | 214 |
| MS.gene85502.t1 | MTR_3g101020 | 55.376 | 186 | 54 | 3 | 203 | 386 | 1 | 159 | 6.70e-59 | 189 |
| MS.gene85502.t1 | MTR_3g102870 | 59.877 | 162 | 61 | 2 | 192 | 350 | 1 | 161 | 1.31e-57 | 186 |
| MS.gene85502.t1 | MTR_3g101150 | 60.759 | 158 | 54 | 3 | 235 | 385 | 1 | 157 | 1.71e-57 | 185 |
| MS.gene85502.t1 | MTR_3g100990 | 64.286 | 154 | 54 | 1 | 1 | 154 | 1 | 153 | 1.74e-55 | 190 |
| MS.gene85502.t1 | MTR_4g093550 | 69.048 | 84 | 26 | 0 | 5 | 88 | 6 | 89 | 8.20e-32 | 116 |
| MS.gene85502.t1 | MTR_6g046890 | 65.753 | 73 | 25 | 0 | 13 | 85 | 7 | 79 | 5.74e-24 | 96.7 |
| MS.gene85502.t1 | MTR_3g101140 | 58.108 | 74 | 26 | 2 | 316 | 385 | 42 | 114 | 1.04e-16 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85502.t1 | AT1G47710 | 53.453 | 391 | 175 | 4 | 1 | 385 | 1 | 390 | 1.87e-148 | 426 |
| MS.gene85502.t1 | AT1G47710 | 53.453 | 391 | 175 | 4 | 1 | 385 | 28 | 417 | 1.60e-147 | 424 |
| MS.gene85502.t1 | AT3G45220 | 48.855 | 393 | 189 | 5 | 1 | 384 | 1 | 390 | 1.67e-128 | 375 |
| MS.gene85502.t1 | AT2G25240 | 48.969 | 388 | 188 | 5 | 1 | 384 | 1 | 382 | 1.52e-125 | 367 |
| MS.gene85502.t1 | AT2G26390 | 49.246 | 398 | 176 | 7 | 1 | 384 | 1 | 386 | 4.28e-125 | 366 |
| MS.gene85502.t1 | AT1G64030 | 44.020 | 393 | 189 | 5 | 1 | 384 | 1 | 371 | 1.37e-106 | 319 |
| MS.gene85502.t1 | AT2G14540 | 44.133 | 392 | 188 | 6 | 1 | 384 | 29 | 397 | 7.64e-104 | 313 |
| MS.gene85502.t1 | AT1G62170 | 42.532 | 395 | 191 | 6 | 1 | 384 | 62 | 431 | 7.88e-102 | 308 |
| MS.gene85502.t1 | AT2G35580 | 43.511 | 393 | 177 | 9 | 1 | 384 | 15 | 371 | 8.93e-101 | 303 |
| MS.gene85502.t1 | AT1G62170 | 39.252 | 428 | 191 | 7 | 1 | 384 | 62 | 464 | 1.01e-94 | 291 |
| MS.gene85502.t1 | AT1G64010 | 45.909 | 220 | 89 | 5 | 170 | 384 | 1 | 195 | 2.38e-59 | 191 |
| MS.gene85502.t1 | AT1G64010 | 44.878 | 205 | 83 | 5 | 185 | 384 | 2 | 181 | 3.16e-51 | 170 |
| MS.gene85502.t1 | AT1G63280 | 56.780 | 118 | 47 | 2 | 126 | 241 | 5 | 120 | 8.35e-37 | 130 |
| MS.gene85502.t1 | AT1G62160 | 38.384 | 198 | 96 | 5 | 192 | 384 | 42 | 218 | 7.20e-35 | 128 |
| MS.gene85502.t1 | AT1G51330 | 50.000 | 120 | 50 | 1 | 103 | 222 | 15 | 124 | 2.17e-28 | 110 |
| MS.gene85502.t1 | AT1G64020 | 32.231 | 121 | 79 | 3 | 1 | 119 | 1 | 120 | 1.88e-14 | 69.7 |
Find 80 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTAATGCACTCTACTTTAA+AGG | 0.141946 | 3.4:+12262047 | MS.gene85502:CDS |
| CCTCGACTCTCCTTTGTTAA+TGG | 0.226202 | 3.4:+12261192 | MS.gene85502:CDS |
| TTATCTTTGCCTTTCTTATA+CGG | 0.278481 | 3.4:-12262215 | None:intergenic |
| GAGGAAGAAGTTCTTTAATA+AGG | 0.287252 | 3.4:-12261989 | None:intergenic |
| TCTCCTTTGTTAATGGTGTA+TGG | 0.291781 | 3.4:+12261199 | MS.gene85502:CDS |
| GACAGTCCATCTTTAGCATT+TGG | 0.341529 | 3.4:-12262266 | None:intergenic |
| ACTGGAACCATTCTCTTTGT+TGG | 0.353661 | 3.4:+12262662 | MS.gene85502:CDS |
| GTTGAGATGATCAGTGGATT+TGG | 0.354332 | 3.4:-12261112 | None:intergenic |
| TTCTAATTACGAGGCCACTA+TGG | 0.368326 | 3.4:+12261269 | MS.gene85502:CDS |
| CTCCTTTGTTAATGGTGTAT+GGG | 0.393630 | 3.4:+12261200 | MS.gene85502:CDS |
| TTCTTTCAAGAACAGATGTT+TGG | 0.393806 | 3.4:-12260980 | None:intergenic |
| TCTGATATGTTGAAGGAGTT+AGG | 0.394592 | 3.4:+12262410 | MS.gene85502:CDS |
| TGAAGGAAGGTTGAAGAGAA+AGG | 0.398588 | 3.4:-12261233 | None:intergenic |
| TTTCTTCCAAATGCTAAAGA+TGG | 0.400337 | 3.4:+12262260 | MS.gene85502:CDS |
| TGCATAGGGAAACGTTTGTT+TGG | 0.411227 | 3.4:-12260954 | None:intergenic |
| AGAAGACACGATTTCTTTGA+AGG | 0.423360 | 3.4:-12261250 | None:intergenic |
| TGAAACTTCTGATATGTTGA+AGG | 0.432611 | 3.4:+12262403 | MS.gene85502:CDS |
| GTCAGCATTGGTTGATGAGT+TGG | 0.440539 | 3.4:+12262286 | MS.gene85502:CDS |
| GTTAAGCTATCAACTGATCT+TGG | 0.441723 | 3.4:-12262011 | None:intergenic |
| CTCTCCGATGCTGCTCCCAC+AGG | 0.449677 | 3.4:+12261165 | MS.gene85502:CDS |
| GAAGGAAGGTTGAAGAGAAA+GGG | 0.450222 | 3.4:-12261232 | None:intergenic |
| ATGGTGGACTCTTCTCTTGT+TGG | 0.459047 | 3.4:+12262470 | MS.gene85502:CDS |
| ATCTCAACGATCTCGCCTCT+CGG | 0.459180 | 3.4:+12261127 | MS.gene85502:CDS |
| CTTCGTCTTCCGTATAAGAA+AGG | 0.461270 | 3.4:+12262206 | MS.gene85502:CDS |
| TGACTAAAGAAGTGAATTTG+TGG | 0.461662 | 3.4:+12261946 | MS.gene85502:CDS |
| TTCATTGAAGTAAATGAAGA+AGG | 0.463233 | 3.4:+12262530 | MS.gene85502:CDS |
| AACAGCTTCTCGACTTCCTC+CGG | 0.467511 | 3.4:+12261088 | MS.gene85502:CDS |
| CATCTCCTCGCTAGTCATGA+AGG | 0.477758 | 3.4:-12262150 | None:intergenic |
| ATCGTCGCTGCTGGCTCTGA+GGG | 0.478136 | 3.4:+12261054 | MS.gene85502:CDS |
| TCCACCTGTGGGAGCAGCAT+CGG | 0.481475 | 3.4:-12261169 | None:intergenic |
| GTCAAACCTCCGGAAAAGAA+AGG | 0.482483 | 3.4:-12262443 | None:intergenic |
| TCTCTAATCAGAAATAAGAA+AGG | 0.483189 | 3.4:-12262632 | None:intergenic |
| AGACTATAGTGTAGTAAGTC+AGG | 0.490539 | 3.4:-12262317 | None:intergenic |
| GTACTAAGCATCGTCGCTGC+TGG | 0.497961 | 3.4:+12261045 | MS.gene85502:CDS |
| TGCATTAGCAAAGATGAGTC+TGG | 0.499282 | 3.4:-12262033 | None:intergenic |
| CTGATTAGAGAAGATTCGAC+TGG | 0.501644 | 3.4:+12262644 | MS.gene85502:CDS |
| TAGGGAAACGTTTGTTTGGT+TGG | 0.507693 | 3.4:-12260950 | None:intergenic |
| TCCGATGCTGCTCCCACAGG+TGG | 0.515601 | 3.4:+12261168 | MS.gene85502:CDS |
| TGACCGAGCTGCCATTCAAA+AGG | 0.515686 | 3.4:-12262121 | None:intergenic |
| CTCTAATCAGAAATAAGAAA+GGG | 0.516757 | 3.4:-12262631 | None:intergenic |
| CATCGTCGCTGCTGGCTCTG+AGG | 0.516897 | 3.4:+12261053 | MS.gene85502:CDS |
| CAGATGTTTGGCAATGCATA+GGG | 0.522319 | 3.4:-12260968 | None:intergenic |
| CACTCTACTTTAAAGGAGCA+TGG | 0.522985 | 3.4:+12262054 | MS.gene85502:CDS |
| GACACGATTTCTTTGAAGGA+AGG | 0.526117 | 3.4:-12261246 | None:intergenic |
| TCACCTACTTCTGCTTCAGC+AGG | 0.528408 | 3.4:-12262344 | None:intergenic |
| TTTGGTTGGTGATTGATTCA+CGG | 0.528455 | 3.4:-12260936 | None:intergenic |
| CACTTGTCCAACAAAGAGAA+TGG | 0.528533 | 3.4:-12262669 | None:intergenic |
| GCTACGAAGTCAAGCTGAGT+TGG | 0.528929 | 3.4:-12262602 | None:intergenic |
| TTTGAATGGCAGCTCGGTCA+AGG | 0.529731 | 3.4:+12262124 | MS.gene85502:CDS |
| CGTCCTGCTGAAGCAGAAGT+AGG | 0.536267 | 3.4:+12262341 | MS.gene85502:CDS |
| ACAGATGTTTGGCAATGCAT+AGG | 0.540369 | 3.4:-12260969 | None:intergenic |
| GAAATCAACATAAGCCATAG+TGG | 0.543010 | 3.4:-12261283 | None:intergenic |
| TGCTAAGATCACTGATCAAG+AGG | 0.544299 | 3.4:-12262698 | None:intergenic |
| GATGATCAGTGGATTTGGAC+CGG | 0.547774 | 3.4:-12261107 | None:intergenic |
| AAGCTGAGTTGGAATACCCT+TGG | 0.547886 | 3.4:-12262591 | None:intergenic |
| GAAATATATTAGAAACAGAA+AGG | 0.558448 | 3.4:-12262499 | None:intergenic |
| AAGCTATCAACTGATCTTGG+AGG | 0.569083 | 3.4:-12262008 | None:intergenic |
| TTATGTTGATTTCATAACCA+AGG | 0.579962 | 3.4:+12261293 | MS.gene85502:CDS |
| GACTAAAGAAGTGAATTTGT+GGG | 0.580421 | 3.4:+12261947 | MS.gene85502:CDS |
| GTCGAGAAGCTGTTGTTGTG+TGG | 0.586119 | 3.4:-12261079 | None:intergenic |
| TGCTGAAATATGTTGTTCCA+AGG | 0.600261 | 3.4:+12262574 | MS.gene85502:CDS |
| TCGAGAAGCTGTTGTTGTGT+GGG | 0.605173 | 3.4:-12261078 | None:intergenic |
| GGTGCTGAAGCTGTTGCCGT+TGG | 0.610281 | 3.4:+12262551 | MS.gene85502:CDS |
| ATCTCCTCGCTAGTCATGAA+GGG | 0.612833 | 3.4:-12262149 | None:intergenic |
| TATGTTGAAGGAGTTAGGAG+TGG | 0.621267 | 3.4:+12262415 | MS.gene85502:CDS |
| GGGAGCAGCATCGGAGAGCA+CGG | 0.622379 | 3.4:-12261160 | None:intergenic |
| ACAACATATTTCAGCACCAA+CGG | 0.624380 | 3.4:-12262567 | None:intergenic |
| GAGAGTCGAGGTCCACCTGT+GGG | 0.635303 | 3.4:-12261180 | None:intergenic |
| TAAAGATGGACTGTCAGCAT+TGG | 0.637494 | 3.4:+12262274 | MS.gene85502:CDS |
| TAATCAGAAATAAGAAAGGG+TGG | 0.640706 | 3.4:-12262628 | None:intergenic |
| GGAGAGTCGAGGTCCACCTG+TGG | 0.645915 | 3.4:-12261181 | None:intergenic |
| AACCCATACACCATTAACAA+AGG | 0.653670 | 3.4:-12261202 | None:intergenic |
| AATCGTGTCTTCTAATTACG+AGG | 0.667058 | 3.4:+12261260 | MS.gene85502:CDS |
| CACGGTAGAAACAAGCCGAG+AGG | 0.667491 | 3.4:-12261142 | None:intergenic |
| GCTGAAATATGTTGTTCCAA+GGG | 0.667759 | 3.4:+12262575 | MS.gene85502:CDS |
| GGTTCCCTTCATGACTAGCG+AGG | 0.683605 | 3.4:+12262145 | MS.gene85502:CDS |
| GAGATCGTTGAGATGATCAG+TGG | 0.692888 | 3.4:-12261118 | None:intergenic |
| GATCAGTGGATTTGGACCGG+AGG | 0.698561 | 3.4:-12261104 | None:intergenic |
| CCATTAACAAAGGAGAGTCG+AGG | 0.698808 | 3.4:-12261192 | None:intergenic |
| AGTACTACTTGAAGAGACAG+TGG | 0.701659 | 3.4:-12261027 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGGATTTTTAAATTTTATA+TGG | + | chr3.4:12261905-12261924 | MS.gene85502:intron | 10.0% |
| !!! | TAAATTTTATATGGTTTTAA+AGG | + | chr3.4:12261914-12261933 | MS.gene85502:intron | 10.0% |
| !!! | TATTTTCTATTAACAATTAA+TGG | + | chr3.4:12261358-12261377 | MS.gene85502:intron | 10.0% |
| !! | TCATATAGTTATGATATATT+TGG | + | chr3.4:12261608-12261627 | MS.gene85502:intron | 15.0% |
| !! | ATAAAATAAACTGTTTGTGA+AGG | - | chr3.4:12261389-12261408 | None:intergenic | 20.0% |
| !! | GAAATATATTAGAAACAGAA+AGG | - | chr3.4:12262502-12262521 | None:intergenic | 20.0% |
| !! | TAGTTATGATATATTTGGAT+TGG | + | chr3.4:12261613-12261632 | MS.gene85502:intron | 20.0% |
| !! | TATCATAACTATATGATTGA+AGG | - | chr3.4:12261604-12261623 | None:intergenic | 20.0% |
| !!! | AATAACATTTGCTCTAAAAT+AGG | - | chr3.4:12261424-12261443 | None:intergenic | 20.0% |
| !!! | ATTTAAAAATCCATTAGCTT+TGG | - | chr3.4:12261899-12261918 | None:intergenic | 20.0% |
| !!! | TCATATGAAATTTTGAATCT+TGG | - | chr3.4:12262380-12262399 | None:intergenic | 20.0% |
| ! | ACTTATAAGTATTATGCTCT+TGG | + | chr3.4:12261481-12261500 | MS.gene85502:intron | 25.0% |
| ! | CAATTAGTATTTAGAAGCTT+TGG | - | chr3.4:12261770-12261789 | None:intergenic | 25.0% |
| ! | CTCTAATCAGAAATAAGAAA+GGG | - | chr3.4:12262634-12262653 | None:intergenic | 25.0% |
| ! | TAATTGTTTATTTCAGCACA+AGG | + | chr3.4:12261784-12261803 | MS.gene85502:intron | 25.0% |
| ! | TCTCTAATCAGAAATAAGAA+AGG | - | chr3.4:12262635-12262654 | None:intergenic | 25.0% |
| ! | TTATCTTTGCCTTTCTTATA+CGG | - | chr3.4:12262218-12262237 | None:intergenic | 25.0% |
| ! | TTCATTGAAGTAAATGAAGA+AGG | + | chr3.4:12262530-12262549 | MS.gene85502:CDS | 25.0% |
| !! | ATTGGTGGTATATAGTATAA+TGG | + | chr3.4:12261631-12261650 | MS.gene85502:intron | 25.0% |
| !! | TATGATTTTCACCTTTTGAA+TGG | + | chr3.4:12262110-12262129 | MS.gene85502:CDS | 25.0% |
| !! | TTATGATATATTTGGATTGG+TGG | + | chr3.4:12261616-12261635 | MS.gene85502:intron | 25.0% |
| !!! | TTATGTTGATTTCATAACCA+AGG | + | chr3.4:12261293-12261312 | MS.gene85502:CDS | 25.0% |
| ACATCTAACTAGCCAATAAA+AGG | - | chr3.4:12261737-12261756 | None:intergenic | 30.0% | |
| CATCTAACTAGCCAATAAAA+GGG | - | chr3.4:12261736-12261755 | None:intergenic | 30.0% | |
| GACTAAAGAAGTGAATTTGT+GGG | + | chr3.4:12261947-12261966 | MS.gene85502:CDS | 30.0% | |
| GAGGAAGAAGTTCTTTAATA+AGG | - | chr3.4:12261992-12262011 | None:intergenic | 30.0% | |
| GTATGTCCATCTTGTATATT+TGG | + | chr3.4:12261820-12261839 | MS.gene85502:intron | 30.0% | |
| TAATCAGAAATAAGAAAGGG+TGG | - | chr3.4:12262631-12262650 | None:intergenic | 30.0% | |
| TAGAAAATAAAAGCAGTGCA+TGG | - | chr3.4:12261347-12261366 | None:intergenic | 30.0% | |
| TCGATAATTACCAAAGCTAA+TGG | + | chr3.4:12261886-12261905 | MS.gene85502:intron | 30.0% | |
| TGAAACTTCTGATATGTTGA+AGG | + | chr3.4:12262403-12262422 | MS.gene85502:CDS | 30.0% | |
| TGACTAAAGAAGTGAATTTG+TGG | + | chr3.4:12261946-12261965 | MS.gene85502:CDS | 30.0% | |
| TGCTCTTGGAATTTATTTGA+TGG | + | chr3.4:12261495-12261514 | MS.gene85502:intron | 30.0% | |
| TTCTTTCAAGAACAGATGTT+TGG | - | chr3.4:12260983-12261002 | None:intergenic | 30.0% | |
| TTGATTCTAGTGTAGAAAGT+AGG | + | chr3.4:12261522-12261541 | MS.gene85502:intron | 30.0% | |
| TTTCTTCCAAATGCTAAAGA+TGG | + | chr3.4:12262260-12262279 | MS.gene85502:CDS | 30.0% | |
| ! | AAAGTAGGTTCTTCTTTTAG+AGG | + | chr3.4:12261537-12261556 | MS.gene85502:intron | 30.0% |
| ! | ATAAAAGGGTATACTTGGAT+TGG | - | chr3.4:12261722-12261741 | None:intergenic | 30.0% |
| ! | ATCCAAGTATACCCTTTTAT+TGG | + | chr3.4:12261722-12261741 | MS.gene85502:intron | 30.0% |
| ! | TGGTATATAGTATAATGGAG+TGG | + | chr3.4:12261636-12261655 | MS.gene85502:intron | 30.0% |
| !! | GATTGGTGTTATTGAGTAAA+AGG | - | chr3.4:12261705-12261724 | None:intergenic | 30.0% |
| AACCCATACACCATTAACAA+AGG | - | chr3.4:12261205-12261224 | None:intergenic | 35.0% | |
| AATCGTGTCTTCTAATTACG+AGG | + | chr3.4:12261260-12261279 | MS.gene85502:CDS | 35.0% | |
| ACAACATATTTCAGCACCAA+CGG | - | chr3.4:12262570-12262589 | None:intergenic | 35.0% | |
| ACACCTCCAAATATACAAGA+TGG | - | chr3.4:12261829-12261848 | None:intergenic | 35.0% | |
| AGAAGACACGATTTCTTTGA+AGG | - | chr3.4:12261253-12261272 | None:intergenic | 35.0% | |
| AGACTATAGTGTAGTAAGTC+AGG | - | chr3.4:12262320-12262339 | None:intergenic | 35.0% | |
| CTCCTTTGTTAATGGTGTAT+GGG | + | chr3.4:12261200-12261219 | MS.gene85502:CDS | 35.0% | |
| GAAATCAACATAAGCCATAG+TGG | - | chr3.4:12261286-12261305 | None:intergenic | 35.0% | |
| GCTAATGCACTCTACTTTAA+AGG | + | chr3.4:12262047-12262066 | MS.gene85502:CDS | 35.0% | |
| GCTGAAATATGTTGTTCCAA+GGG | + | chr3.4:12262575-12262594 | MS.gene85502:CDS | 35.0% | |
| GGAGTGGAATGAAATGATTT+GGG | + | chr3.4:12261652-12261671 | MS.gene85502:intron | 35.0% | |
| GTTAAGCTATCAACTGATCT+TGG | - | chr3.4:12262014-12262033 | None:intergenic | 35.0% | |
| TCTCCTTTGTTAATGGTGTA+TGG | + | chr3.4:12261199-12261218 | MS.gene85502:CDS | 35.0% | |
| TCTGATATGTTGAAGGAGTT+AGG | + | chr3.4:12262410-12262429 | MS.gene85502:CDS | 35.0% | |
| TGCTGAAATATGTTGTTCCA+AGG | + | chr3.4:12262574-12262593 | MS.gene85502:CDS | 35.0% | |
| TGGAGTGGAATGAAATGATT+TGG | + | chr3.4:12261651-12261670 | MS.gene85502:intron | 35.0% | |
| TGTCCATCTTGTATATTTGG+AGG | + | chr3.4:12261823-12261842 | MS.gene85502:intron | 35.0% | |
| ! | AGCCAATAAAAGGGTATACT+TGG | - | chr3.4:12261727-12261746 | None:intergenic | 35.0% |
| !! | GTGGTTTTACCTTTCTTTTC+CGG | + | chr3.4:12262434-12262453 | MS.gene85502:CDS | 35.0% |
| !! | TTTGGTTGGTGATTGATTCA+CGG | - | chr3.4:12260939-12260958 | None:intergenic | 35.0% |
| AAGCTATCAACTGATCTTGG+AGG | - | chr3.4:12262011-12262030 | None:intergenic | 40.0% | |
| ACAGATGTTTGGCAATGCAT+AGG | - | chr3.4:12260972-12260991 | None:intergenic | 40.0% | |
| ACTGGAACCATTCTCTTTGT+TGG | + | chr3.4:12262662-12262681 | MS.gene85502:CDS | 40.0% | |
| AGGATGAAGTGTGTGATTCA+TGG | + | chr3.4:12261557-12261576 | MS.gene85502:intron | 40.0% | |
| AGTACTACTTGAAGAGACAG+TGG | - | chr3.4:12261030-12261049 | None:intergenic | 40.0% | |
| CACTTGTCCAACAAAGAGAA+TGG | - | chr3.4:12262672-12262691 | None:intergenic | 40.0% | |
| CAGATGTTTGGCAATGCATA+GGG | - | chr3.4:12260971-12260990 | None:intergenic | 40.0% | |
| CTGATTAGAGAAGATTCGAC+TGG | + | chr3.4:12262644-12262663 | MS.gene85502:CDS | 40.0% | |
| CTTCGTCTTCCGTATAAGAA+AGG | + | chr3.4:12262206-12262225 | MS.gene85502:CDS | 40.0% | |
| GAAGGAAGGTTGAAGAGAAA+GGG | - | chr3.4:12261235-12261254 | None:intergenic | 40.0% | |
| GACAGTCCATCTTTAGCATT+TGG | - | chr3.4:12262269-12262288 | None:intergenic | 40.0% | |
| GGGGATATACAAACATACCT+TGG | - | chr3.4:12261313-12261332 | None:intergenic | 40.0% | |
| TAGGGAAACGTTTGTTTGGT+TGG | - | chr3.4:12260953-12260972 | None:intergenic | 40.0% | |
| TATGTTGAAGGAGTTAGGAG+TGG | + | chr3.4:12262415-12262434 | MS.gene85502:CDS | 40.0% | |
| TGAAGGAAGGTTGAAGAGAA+AGG | - | chr3.4:12261236-12261255 | None:intergenic | 40.0% | |
| TGCATAGGGAAACGTTTGTT+TGG | - | chr3.4:12260957-12260976 | None:intergenic | 40.0% | |
| TGCATTAGCAAAGATGAGTC+TGG | - | chr3.4:12262036-12262055 | None:intergenic | 40.0% | |
| TTCCGGAGGTTTGACAAAAA+TGG | + | chr3.4:12262451-12262470 | MS.gene85502:CDS | 40.0% | |
| TTCTAATTACGAGGCCACTA+TGG | + | chr3.4:12261269-12261288 | MS.gene85502:CDS | 40.0% | |
| ! | CACTCTACTTTAAAGGAGCA+TGG | + | chr3.4:12262054-12262073 | MS.gene85502:CDS | 40.0% |
| ! | GACACGATTTCTTTGAAGGA+AGG | - | chr3.4:12261249-12261268 | None:intergenic | 40.0% |
| ! | GTTGAGATGATCAGTGGATT+TGG | - | chr3.4:12261115-12261134 | None:intergenic | 40.0% |
| ! | GTTTTACCTTTCTTTTCCGG+AGG | + | chr3.4:12262437-12262456 | MS.gene85502:CDS | 40.0% |
| !! | CACCATTTTTGTCAAACCTC+CGG | - | chr3.4:12262456-12262475 | None:intergenic | 40.0% |
| !! | TAAAGATGGACTGTCAGCAT+TGG | + | chr3.4:12262274-12262293 | MS.gene85502:CDS | 40.0% |
| ATCTCCTCGCTAGTCATGAA+GGG | - | chr3.4:12262152-12262171 | None:intergenic | 45.0% | |
| CCATTAACAAAGGAGAGTCG+AGG | - | chr3.4:12261195-12261214 | None:intergenic | 45.0% | |
| CCTCGACTCTCCTTTGTTAA+TGG | + | chr3.4:12261192-12261211 | MS.gene85502:CDS | 45.0% | |
| CGGAGGTTTGACAAAAATGG+TGG | + | chr3.4:12262454-12262473 | MS.gene85502:CDS | 45.0% | |
| GAGATCGTTGAGATGATCAG+TGG | - | chr3.4:12261121-12261140 | None:intergenic | 45.0% | |
| GTCAAACCTCCGGAAAAGAA+AGG | - | chr3.4:12262446-12262465 | None:intergenic | 45.0% | |
| TCGAGAAGCTGTTGTTGTGT+GGG | - | chr3.4:12261081-12261100 | None:intergenic | 45.0% | |
| TGGGCTGAAAAAGAGACGAA+TGG | + | chr3.4:12261966-12261985 | MS.gene85502:CDS | 45.0% | |
| ! | AAGCTGAGTTGGAATACCCT+TGG | - | chr3.4:12262594-12262613 | None:intergenic | 45.0% |
| ! | AGCAGTGCATGGATTGAAAG+AGG | - | chr3.4:12261336-12261355 | None:intergenic | 45.0% |
| ! | AGTGCATGGATTGAAAGAGG+GGG | - | chr3.4:12261333-12261352 | None:intergenic | 45.0% |
| ! | CAGTGCATGGATTGAAAGAG+GGG | - | chr3.4:12261334-12261353 | None:intergenic | 45.0% |
| ! | GATGATCAGTGGATTTGGAC+CGG | - | chr3.4:12261110-12261129 | None:intergenic | 45.0% |
| ! | GCAGTGCATGGATTGAAAGA+GGG | - | chr3.4:12261335-12261354 | None:intergenic | 45.0% |
| ! | TCACCTTTTGAATGGCAGCT+CGG | + | chr3.4:12262118-12262137 | MS.gene85502:CDS | 45.0% |
| !! | ATGGTGGACTCTTCTCTTGT+TGG | + | chr3.4:12262470-12262489 | MS.gene85502:CDS | 45.0% |
| !! | GTCAGCATTGGTTGATGAGT+TGG | + | chr3.4:12262286-12262305 | MS.gene85502:CDS | 45.0% |
| AACAGCTTCTCGACTTCCTC+CGG | + | chr3.4:12261088-12261107 | MS.gene85502:CDS | 50.0% | |
| ATCTCAACGATCTCGCCTCT+CGG | + | chr3.4:12261127-12261146 | MS.gene85502:CDS | 50.0% | |
| CATCTCCTCGCTAGTCATGA+AGG | - | chr3.4:12262153-12262172 | None:intergenic | 50.0% | |
| GCTACGAAGTCAAGCTGAGT+TGG | - | chr3.4:12262605-12262624 | None:intergenic | 50.0% | |
| GTCGAGAAGCTGTTGTTGTG+TGG | - | chr3.4:12261082-12261101 | None:intergenic | 50.0% | |
| TCACCTACTTCTGCTTCAGC+AGG | - | chr3.4:12262347-12262366 | None:intergenic | 50.0% | |
| TGACCGAGCTGCCATTCAAA+AGG | - | chr3.4:12262124-12262143 | None:intergenic | 50.0% | |
| TTTGAATGGCAGCTCGGTCA+AGG | + | chr3.4:12262124-12262143 | MS.gene85502:CDS | 50.0% | |
| ! | GTGCATGGATTGAAAGAGGG+GGG | - | chr3.4:12261332-12261351 | None:intergenic | 50.0% |
| CACGGTAGAAACAAGCCGAG+AGG | - | chr3.4:12261145-12261164 | None:intergenic | 55.0% | |
| CGTCCTGCTGAAGCAGAAGT+AGG | + | chr3.4:12262341-12262360 | MS.gene85502:CDS | 55.0% | |
| GGTTCCCTTCATGACTAGCG+AGG | + | chr3.4:12262145-12262164 | MS.gene85502:CDS | 55.0% | |
| ! | GATCAGTGGATTTGGACCGG+AGG | - | chr3.4:12261107-12261126 | None:intergenic | 55.0% |
| ! | GTACTAAGCATCGTCGCTGC+TGG | + | chr3.4:12261045-12261064 | MS.gene85502:CDS | 55.0% |
| GAGAGTCGAGGTCCACCTGT+GGG | - | chr3.4:12261183-12261202 | None:intergenic | 60.0% | |
| TCCACCTGTGGGAGCAGCAT+CGG | - | chr3.4:12261172-12261191 | None:intergenic | 60.0% | |
| ! | GGTGCTGAAGCTGTTGCCGT+TGG | + | chr3.4:12262551-12262570 | MS.gene85502:CDS | 60.0% |
| !! | ATCGTCGCTGCTGGCTCTGA+GGG | + | chr3.4:12261054-12261073 | MS.gene85502:CDS | 60.0% |
| CTCTCCGATGCTGCTCCCAC+AGG | + | chr3.4:12261165-12261184 | MS.gene85502:CDS | 65.0% | |
| GGAGAGTCGAGGTCCACCTG+TGG | - | chr3.4:12261184-12261203 | None:intergenic | 65.0% | |
| TCCGATGCTGCTCCCACAGG+TGG | + | chr3.4:12261168-12261187 | MS.gene85502:CDS | 65.0% | |
| ! | GGGAGCAGCATCGGAGAGCA+CGG | - | chr3.4:12261163-12261182 | None:intergenic | 65.0% |
| !! | CATCGTCGCTGCTGGCTCTG+AGG | + | chr3.4:12261053-12261072 | MS.gene85502:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 12260928 | 12262712 | 12260928 | ID=MS.gene85502 |
| chr3.4 | mRNA | 12260928 | 12262712 | 12260928 | ID=MS.gene85502.t1;Parent=MS.gene85502 |
| chr3.4 | exon | 12260928 | 12261314 | 12260928 | ID=MS.gene85502.t1.exon1;Parent=MS.gene85502.t1 |
| chr3.4 | CDS | 12260928 | 12261314 | 12260928 | ID=cds.MS.gene85502.t1;Parent=MS.gene85502.t1 |
| chr3.4 | exon | 12261936 | 12262712 | 12261936 | ID=MS.gene85502.t1.exon2;Parent=MS.gene85502.t1 |
| chr3.4 | CDS | 12261936 | 12262712 | 12261936 | ID=cds.MS.gene85502.t1;Parent=MS.gene85502.t1 |
| Gene Sequence |
| Protein sequence |
