Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85503.t1 | RHN65795.1 | 79.8 | 396 | 77 | 1 | 1 | 393 | 46 | 441 | 6.10E-167 | 597 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85503.t1 | Q9S7T8 | 51.8 | 388 | 180 | 3 | 11 | 391 | 3 | 390 | 8.0e-107 | 388.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85503.t1 | A0A396IPH6 | 79.8 | 396 | 77 | 1 | 1 | 393 | 46 | 441 | 4.4e-167 | 597.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene065945 | MS.gene85503 | PPI |
| MS.gene85503 | MS.gene031697 | PPI |
| MS.gene006610 | MS.gene85503 | PPI |
| MS.gene85503 | MS.gene045585 | PPI |
| MS.gene85503 | MS.gene065944 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85503.t1 | MTR_3g018740 | 81.347 | 386 | 69 | 1 | 11 | 393 | 3 | 388 | 0.0 | 612 |
| MS.gene85503.t1 | MTR_3g101010 | 71.503 | 386 | 104 | 2 | 11 | 391 | 3 | 387 | 0.0 | 514 |
| MS.gene85503.t1 | MTR_8g027395 | 67.176 | 393 | 123 | 4 | 3 | 391 | 5 | 395 | 6.54e-180 | 506 |
| MS.gene85503.t1 | MTR_2g045980 | 67.179 | 390 | 117 | 5 | 11 | 393 | 3 | 388 | 9.68e-175 | 492 |
| MS.gene85503.t1 | MTR_4g045707 | 65.796 | 383 | 127 | 2 | 12 | 391 | 5 | 386 | 1.70e-173 | 489 |
| MS.gene85503.t1 | MTR_2g046030 | 66.154 | 390 | 121 | 4 | 11 | 393 | 3 | 388 | 1.70e-173 | 489 |
| MS.gene85503.t1 | MTR_8g027420 | 66.841 | 383 | 112 | 4 | 11 | 391 | 4 | 373 | 1.84e-172 | 486 |
| MS.gene85503.t1 | MTR_3g101180 | 63.544 | 395 | 126 | 6 | 13 | 391 | 6 | 398 | 9.83e-167 | 473 |
| MS.gene85503.t1 | MTR_8g461160 | 64.359 | 390 | 129 | 4 | 13 | 393 | 6 | 394 | 3.49e-165 | 468 |
| MS.gene85503.t1 | MTR_3g101030 | 63.476 | 397 | 119 | 5 | 18 | 391 | 34 | 427 | 1.06e-164 | 468 |
| MS.gene85503.t1 | MTR_3g048000 | 62.992 | 381 | 120 | 4 | 14 | 391 | 28 | 390 | 1.30e-164 | 467 |
| MS.gene85503.t1 | MTR_7g451890 | 59.398 | 399 | 152 | 3 | 3 | 392 | 4 | 401 | 1.19e-163 | 465 |
| MS.gene85503.t1 | MTR_7g050810 | 60.000 | 400 | 147 | 4 | 5 | 392 | 5 | 403 | 6.69e-163 | 463 |
| MS.gene85503.t1 | MTR_4g088535 | 65.535 | 383 | 112 | 5 | 8 | 388 | 2 | 366 | 2.64e-162 | 461 |
| MS.gene85503.t1 | MTR_7g047780 | 60.150 | 399 | 149 | 4 | 3 | 392 | 4 | 401 | 4.93e-161 | 458 |
| MS.gene85503.t1 | MTR_3g101130 | 61.856 | 388 | 135 | 4 | 12 | 391 | 5 | 387 | 2.20e-160 | 456 |
| MS.gene85503.t1 | MTR_4g088525 | 63.989 | 361 | 128 | 2 | 32 | 391 | 8 | 367 | 5.99e-158 | 449 |
| MS.gene85503.t1 | MTR_7g050750 | 59.184 | 392 | 150 | 3 | 10 | 392 | 5 | 395 | 2.31e-157 | 449 |
| MS.gene85503.t1 | MTR_3g015620 | 62.211 | 389 | 113 | 5 | 13 | 392 | 16 | 379 | 4.03e-150 | 430 |
| MS.gene85503.t1 | MTR_3g101050 | 63.969 | 383 | 113 | 7 | 16 | 391 | 32 | 396 | 1.72e-147 | 424 |
| MS.gene85503.t1 | MTR_3g102920 | 56.728 | 379 | 120 | 6 | 21 | 391 | 66 | 408 | 1.13e-130 | 381 |
| MS.gene85503.t1 | MTR_3g101190 | 54.856 | 381 | 99 | 6 | 11 | 391 | 3 | 310 | 9.69e-127 | 368 |
| MS.gene85503.t1 | MTR_3g018747 | 71.264 | 261 | 57 | 2 | 137 | 393 | 9 | 255 | 4.68e-121 | 351 |
| MS.gene85503.t1 | MTR_3g101200 | 51.777 | 394 | 157 | 5 | 5 | 391 | 23 | 390 | 4.98e-119 | 351 |
| MS.gene85503.t1 | MTR_3g100995 | 64.822 | 253 | 82 | 2 | 144 | 392 | 14 | 263 | 1.80e-110 | 324 |
| MS.gene85503.t1 | MTR_7g050830 | 52.778 | 324 | 120 | 3 | 3 | 304 | 6 | 318 | 4.65e-109 | 323 |
| MS.gene85503.t1 | MTR_3g100010 | 55.769 | 312 | 90 | 3 | 36 | 314 | 40 | 336 | 2.60e-103 | 309 |
| MS.gene85503.t1 | MTR_3g015760 | 60.650 | 277 | 99 | 3 | 122 | 392 | 8 | 280 | 1.20e-101 | 303 |
| MS.gene85503.t1 | MTR_3g111160 | 67.136 | 213 | 63 | 2 | 184 | 391 | 8 | 218 | 6.33e-90 | 270 |
| MS.gene85503.t1 | MTR_3g101110 | 58.898 | 236 | 63 | 3 | 140 | 367 | 71 | 280 | 2.86e-83 | 256 |
| MS.gene85503.t1 | MTR_3g114310 | 41.837 | 392 | 209 | 11 | 14 | 390 | 20 | 407 | 3.32e-82 | 258 |
| MS.gene85503.t1 | MTR_3g100520 | 61.111 | 216 | 73 | 3 | 178 | 391 | 1 | 207 | 1.21e-80 | 246 |
| MS.gene85503.t1 | MTR_2g046410 | 58.824 | 238 | 79 | 5 | 163 | 393 | 124 | 349 | 1.93e-79 | 248 |
| MS.gene85503.t1 | MTR_3g099970 | 58.883 | 197 | 63 | 2 | 137 | 333 | 20 | 198 | 1.27e-70 | 220 |
| MS.gene85503.t1 | MTR_3g111150 | 63.068 | 176 | 41 | 1 | 15 | 190 | 1 | 152 | 2.22e-67 | 211 |
| MS.gene85503.t1 | MTR_3g101150 | 64.557 | 158 | 46 | 2 | 243 | 391 | 1 | 157 | 6.88e-62 | 196 |
| MS.gene85503.t1 | MTR_3g102870 | 57.576 | 165 | 64 | 2 | 200 | 359 | 1 | 164 | 1.30e-55 | 181 |
| MS.gene85503.t1 | MTR_3g101020 | 53.763 | 186 | 55 | 2 | 211 | 392 | 1 | 159 | 5.90e-55 | 179 |
| MS.gene85503.t1 | MTR_3g100990 | 73.600 | 125 | 33 | 0 | 13 | 137 | 5 | 129 | 1.41e-52 | 182 |
| MS.gene85503.t1 | MTR_4g093550 | 65.909 | 88 | 30 | 0 | 9 | 96 | 2 | 89 | 9.01e-28 | 105 |
| MS.gene85503.t1 | MTR_6g046890 | 64.384 | 73 | 21 | 1 | 32 | 99 | 18 | 90 | 6.94e-20 | 85.5 |
| MS.gene85503.t1 | MTR_3g101140 | 59.459 | 74 | 23 | 2 | 324 | 391 | 42 | 114 | 2.54e-17 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85503.t1 | AT1G47710 | 51.804 | 388 | 180 | 3 | 11 | 391 | 3 | 390 | 9.86e-138 | 399 |
| MS.gene85503.t1 | AT1G47710 | 51.804 | 388 | 180 | 3 | 11 | 391 | 30 | 417 | 3.99e-137 | 398 |
| MS.gene85503.t1 | AT3G45220 | 48.082 | 391 | 189 | 7 | 11 | 390 | 3 | 390 | 2.69e-119 | 352 |
| MS.gene85503.t1 | AT2G26390 | 47.462 | 394 | 183 | 7 | 11 | 390 | 3 | 386 | 8.50e-114 | 338 |
| MS.gene85503.t1 | AT2G25240 | 47.826 | 391 | 182 | 7 | 11 | 390 | 3 | 382 | 1.46e-113 | 337 |
| MS.gene85503.t1 | AT1G64030 | 42.455 | 391 | 192 | 6 | 11 | 390 | 3 | 371 | 2.50e-94 | 288 |
| MS.gene85503.t1 | AT2G14540 | 41.562 | 397 | 199 | 7 | 4 | 390 | 24 | 397 | 4.73e-92 | 283 |
| MS.gene85503.t1 | AT2G35580 | 42.455 | 391 | 192 | 8 | 11 | 390 | 3 | 371 | 3.39e-90 | 277 |
| MS.gene85503.t1 | AT1G62170 | 39.386 | 391 | 203 | 6 | 11 | 390 | 64 | 431 | 2.46e-88 | 274 |
| MS.gene85503.t1 | AT1G62170 | 36.493 | 422 | 201 | 7 | 13 | 390 | 66 | 464 | 3.52e-81 | 256 |
| MS.gene85503.t1 | AT1G64010 | 44.240 | 217 | 95 | 4 | 178 | 390 | 1 | 195 | 8.22e-51 | 169 |
| MS.gene85503.t1 | AT1G64010 | 44.554 | 202 | 86 | 4 | 193 | 390 | 2 | 181 | 2.53e-47 | 160 |
| MS.gene85503.t1 | AT1G62160 | 39.205 | 176 | 86 | 5 | 217 | 390 | 62 | 218 | 1.02e-30 | 117 |
| MS.gene85503.t1 | AT1G63280 | 47.458 | 118 | 58 | 2 | 134 | 249 | 5 | 120 | 3.82e-26 | 102 |
| MS.gene85503.t1 | AT1G51330 | 46.903 | 113 | 55 | 2 | 135 | 243 | 29 | 140 | 4.35e-21 | 90.5 |
| MS.gene85503.t1 | AT1G64020 | 31.250 | 112 | 74 | 3 | 18 | 127 | 10 | 120 | 9.52e-12 | 62.4 |
Find 80 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTAATGCACTCTACTTTAA+AGG | 0.141946 | 3.4:+12254308 | MS.gene85503:CDS |
| TGATTAAAGAAGTGAATTTA+TGG | 0.223064 | 3.4:+12254207 | MS.gene85503:CDS |
| GAGGAAGAAGTTCTTTAATA+AGG | 0.287252 | 3.4:-12254250 | None:intergenic |
| GTTGAGATCATCGGTGGATT+TGG | 0.293645 | 3.4:-12253579 | None:intergenic |
| GGACAAAGTAGATTTATAAT+TGG | 0.309459 | 3.4:-12253738 | None:intergenic |
| CAATGCTAACAGTCCATCTT+TGG | 0.352985 | 3.4:-12254534 | None:intergenic |
| ACTGGAACCATTCTCTTTGT+TGG | 0.353661 | 3.4:+12254917 | MS.gene85503:CDS |
| CTCTCAGACGCCGCTTTCAC+TGG | 0.370831 | 3.4:+12253632 | MS.gene85503:CDS |
| TGAAGGAAGGTTGAAGAGAA+AGG | 0.378765 | 3.4:-12253700 | None:intergenic |
| CTTCGTCTTCTTTATAAGAA+AGG | 0.383719 | 3.4:+12254467 | MS.gene85503:CDS |
| GATTAAAGAAGTGAATTTAT+GGG | 0.386003 | 3.4:+12254208 | MS.gene85503:CDS |
| TCTCATATGTTGAAGGAGTT+AGG | 0.397032 | 3.4:+12254671 | MS.gene85503:CDS |
| TTCTTTCGAGAACAGATGTT+TGG | 0.401374 | 3.4:-12253447 | None:intergenic |
| AACAGTCCATCTTTGGCATC+TGG | 0.409162 | 3.4:-12254527 | None:intergenic |
| CGAATCAGACGTTTGATGTA+TGG | 0.409587 | 3.4:+12254336 | MS.gene85503:CDS |
| TGCCGAGGGAAACATTTGTT+TGG | 0.416643 | 3.4:-12253421 | None:intergenic |
| TGAAACTTCTCATATGTTGA+AGG | 0.426857 | 3.4:+12254664 | MS.gene85503:CDS |
| GAAGGAAGGTTGAAGAGAAA+GGG | 0.450222 | 3.4:-12253699 | None:intergenic |
| TTTCTTCCAGATGCCAAAGA+TGG | 0.454297 | 3.4:+12254521 | MS.gene85503:CDS |
| TTCATTGAAGTAAATGAAGA+AGG | 0.457204 | 3.4:+12254791 | MS.gene85503:CDS |
| GTTAAGCTATCAACCGATCT+TGG | 0.459359 | 3.4:-12254272 | None:intergenic |
| GTTAGCATTGGTGGAGAAGT+TGG | 0.459448 | 3.4:+12254547 | MS.gene85503:CDS |
| AGATGGACTGTTAGCATTGG+TGG | 0.461266 | 3.4:+12254538 | MS.gene85503:CDS |
| GAAGCTGCTGCAGCTAGTGC+TGG | 0.463886 | 3.4:+12254818 | MS.gene85503:CDS |
| TGACTGAGCTTCCATTCAAA+AGG | 0.469619 | 3.4:-12254382 | None:intergenic |
| CAGACGCCGCTTTCACTGGC+GGG | 0.477109 | 3.4:+12253636 | MS.gene85503:CDS |
| TCTCTAATCAGAAATAAGAA+AGG | 0.483189 | 3.4:-12254887 | None:intergenic |
| CAATGATACTTAGCACAACT+TGG | 0.487762 | 3.4:-12253505 | None:intergenic |
| AGACTATAGTGTAGTAAGTC+AGG | 0.490539 | 3.4:-12254578 | None:intergenic |
| GACGTTTGATGTATGGAAAA+CGG | 0.491740 | 3.4:+12254343 | MS.gene85503:CDS |
| CATCCCCTCGGTAGTCATGA+AGG | 0.493267 | 3.4:-12254411 | None:intergenic |
| CTGATTAGAGAAGATTCGAC+TGG | 0.501644 | 3.4:+12254899 | MS.gene85503:CDS |
| TATCATTGCGGCTGGCTCTG+AGG | 0.502501 | 3.4:+12253520 | MS.gene85503:CDS |
| CTCTGTTGATTTCATAACCA+AGG | 0.503875 | 3.4:+12253760 | MS.gene85503:CDS |
| ATCATTGCGGCTGGCTCTGA+GGG | 0.505022 | 3.4:+12253521 | MS.gene85503:CDS |
| TCATCTACTTCTACTTCAGC+AGG | 0.509971 | 3.4:-12254605 | None:intergenic |
| CTCTAATCAGAAATAAGAAA+GGG | 0.516757 | 3.4:-12254886 | None:intergenic |
| AAAGTCTATCGCGACACACT+CGG | 0.520297 | 3.4:-12254852 | None:intergenic |
| AGAACTTCTTCCTCCAAGAT+CGG | 0.523770 | 3.4:+12254259 | MS.gene85503:CDS |
| GTCAAACCTCCAGGAGTGAA+AGG | 0.524050 | 3.4:-12254704 | None:intergenic |
| CACTTGTCCAACAAAGAGAA+TGG | 0.528533 | 3.4:-12254924 | None:intergenic |
| TTTGGTTGGTGATTGATTCG+TGG | 0.536866 | 3.4:-12253403 | None:intergenic |
| TGCTAAGATCACTGATCAAG+AGG | 0.544299 | 3.4:-12254953 | None:intergenic |
| TCAGACGCCGCTTTCACTGG+CGG | 0.550246 | 3.4:+12253635 | MS.gene85503:CDS |
| GCGAGGCCCGCCAGTGAAAG+CGG | 0.556128 | 3.4:-12253642 | None:intergenic |
| GAAATATATTAGAAACAGAA+AGG | 0.558448 | 3.4:-12254760 | None:intergenic |
| GTGCTAAGTATCATTGCGGC+TGG | 0.566527 | 3.4:+12253512 | MS.gene85503:CDS |
| GAGGGAAACATTTGTTTGGT+TGG | 0.569951 | 3.4:-12253417 | None:intergenic |
| AAGCTATCAACCGATCTTGG+AGG | 0.570822 | 3.4:-12254269 | None:intergenic |
| AACCAAACAAATGTTTCCCT+CGG | 0.575261 | 3.4:+12253419 | MS.gene85503:CDS |
| GGCGAGGTTGTTGAGATCAT+CGG | 0.582316 | 3.4:-12253588 | None:intergenic |
| ATGAATAAACTGCATCCCCT+CGG | 0.585021 | 3.4:-12254423 | None:intergenic |
| GTCGAGAAGCTGTTGTTGTG+TGG | 0.586119 | 3.4:-12253546 | None:intergenic |
| TGCATTAGCAAAGATGAGGC+GGG | 0.588872 | 3.4:-12254294 | None:intergenic |
| TTTGAATGGAAGCTCAGTCA+AGG | 0.589562 | 3.4:+12254385 | MS.gene85503:CDS |
| AACAAATGTTTCCCTCGGCA+TGG | 0.592617 | 3.4:+12253424 | MS.gene85503:CDS |
| ACAGATGTTTGGCCATGCCG+AGG | 0.599139 | 3.4:-12253436 | None:intergenic |
| CAGATGTTTGGCCATGCCGA+GGG | 0.601831 | 3.4:-12253435 | None:intergenic |
| TCGAGAAGCTGTTGTTGTGT+GGG | 0.605173 | 3.4:-12253545 | None:intergenic |
| GACGATAGAAACAAGGTGAG+AGG | 0.606218 | 3.4:-12253609 | None:intergenic |
| AGCACAACTTGGAGCAACAA+TGG | 0.608333 | 3.4:-12253494 | None:intergenic |
| ATCCCCTCGGTAGTCATGAA+GGG | 0.614506 | 3.4:-12254410 | None:intergenic |
| TATGTTGAAGGAGTTAGGAG+TGG | 0.615125 | 3.4:+12254676 | MS.gene85503:CDS |
| CTGAGAGGACGATAGAAACA+AGG | 0.615824 | 3.4:-12253616 | None:intergenic |
| GTGCATTAGCAAAGATGAGG+CGG | 0.619571 | 3.4:-12254295 | None:intergenic |
| GATCATCGGTGGATTTGGAA+CGG | 0.619697 | 3.4:-12253574 | None:intergenic |
| CAGTGAAAGCGGCGTCTGAG+AGG | 0.622496 | 3.4:-12253631 | None:intergenic |
| GTTCCCTTCATGACTACCGA+GGG | 0.628600 | 3.4:+12254407 | MS.gene85503:CDS |
| TAATCAGAAATAAGAAAGGG+TGG | 0.640706 | 3.4:-12254883 | None:intergenic |
| AGAGTGCATTAGCAAAGATG+AGG | 0.641780 | 3.4:-12254298 | None:intergenic |
| CAAAGATGGACTGTTAGCAT+TGG | 0.645848 | 3.4:+12254535 | MS.gene85503:CDS |
| CATCGGTGGATTTGGAACGG+AGG | 0.663201 | 3.4:-12253571 | None:intergenic |
| GAGGTTGTTGAGATCATCGG+TGG | 0.666044 | 3.4:-12253585 | None:intergenic |
| TAGAAACAAGGTGAGAGGCG+AGG | 0.684792 | 3.4:-12253604 | None:intergenic |
| GGTTCCCTTCATGACTACCG+AGG | 0.692485 | 3.4:+12254406 | MS.gene85503:CDS |
| CTTGGTTATGAAATCAACAG+AGG | 0.695380 | 3.4:-12253759 | None:intergenic |
| ATACACCATCAACAAAAGAG+AGG | 0.697514 | 3.4:-12253664 | None:intergenic |
| CCATCAACAAAAGAGAGGCG+AGG | 0.704628 | 3.4:-12253659 | None:intergenic |
| AGTTGTGCTAAGTATCATTG+CGG | 0.711501 | 3.4:+12253508 | MS.gene85503:CDS |
| TTCCCTTCATGACTACCGAG+GGG | 0.739663 | 3.4:+12254408 | MS.gene85503:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTAATTAAACCAATAAA+AGG | + | chr3.4:12254090-12254109 | MS.gene85503:intron | 10.0% |
| !! | ATTTCATGTAAATTAATTTA+AGG | + | chr3.4:12253879-12253898 | MS.gene85503:intron | 10.0% |
| !! | TTTCATGTAAATTAATTTAA+GGG | + | chr3.4:12253880-12253899 | MS.gene85503:intron | 10.0% |
| !!! | TGTTTTTATTTTATTTTTGA+TGG | - | chr3.4:12253845-12253864 | None:intergenic | 10.0% |
| !! | AATTTACATGAAATAAAAAC+AGG | - | chr3.4:12253873-12253892 | None:intergenic | 15.0% |
| !! | GTGAAAAAAACAAAAAAAAA+GGG | - | chr3.4:12253802-12253821 | None:intergenic | 15.0% |
| !! | TGTGAAAAAAACAAAAAAAA+AGG | - | chr3.4:12253803-12253822 | None:intergenic | 15.0% |
| !!! | ACTGATTTTTAAATTTGATA+TGG | + | chr3.4:12254166-12254185 | MS.gene85503:intron | 15.0% |
| !! | CAAAAAAATCTATAGTACTA+AGG | + | chr3.4:12254001-12254020 | MS.gene85503:intron | 20.0% |
| !! | GAAATATATTAGAAACAGAA+AGG | - | chr3.4:12254763-12254782 | None:intergenic | 20.0% |
| !! | GATTAAAGAAGTGAATTTAT+GGG | + | chr3.4:12254208-12254227 | MS.gene85503:CDS | 20.0% |
| !! | TGATTAAAGAAGTGAATTTA+TGG | + | chr3.4:12254207-12254226 | MS.gene85503:CDS | 20.0% |
| !! | TTCTTTAATCAATGTAGAAT+TGG | - | chr3.4:12253934-12253953 | None:intergenic | 20.0% |
| !!! | AACATAAGAAAACCTTTTAT+TGG | - | chr3.4:12254105-12254124 | None:intergenic | 20.0% |
| !!! | TACTATAGATTTTTTTGAAG+AGG | - | chr3.4:12253998-12254017 | None:intergenic | 20.0% |
| !!! | TCATATGAAATTTTGAATCT+TGG | - | chr3.4:12254641-12254660 | None:intergenic | 20.0% |
| ! | CTCTAATCAGAAATAAGAAA+GGG | - | chr3.4:12254889-12254908 | None:intergenic | 25.0% |
| ! | GGACAAAGTAGATTTATAAT+TGG | - | chr3.4:12253741-12253760 | None:intergenic | 25.0% |
| ! | TCTCTAATCAGAAATAAGAA+AGG | - | chr3.4:12254890-12254909 | None:intergenic | 25.0% |
| ! | TGATGCTAGAAAACAATAAA+GGG | - | chr3.4:12254043-12254062 | None:intergenic | 25.0% |
| ! | TTCATTGAAGTAAATGAAGA+AGG | + | chr3.4:12254791-12254810 | MS.gene85503:CDS | 25.0% |
| ! | TTGATGCTAGAAAACAATAA+AGG | - | chr3.4:12254044-12254063 | None:intergenic | 25.0% |
| !! | TATGATTTTCACCTTTTGAA+TGG | + | chr3.4:12254371-12254390 | MS.gene85503:CDS | 25.0% |
| CAATGTAGAATTGGTATACT+AGG | - | chr3.4:12253925-12253944 | None:intergenic | 30.0% | |
| CTTCGTCTTCTTTATAAGAA+AGG | + | chr3.4:12254467-12254486 | MS.gene85503:CDS | 30.0% | |
| GAGGAAGAAGTTCTTTAATA+AGG | - | chr3.4:12254253-12254272 | None:intergenic | 30.0% | |
| TAATCAGAAATAAGAAAGGG+TGG | - | chr3.4:12254886-12254905 | None:intergenic | 30.0% | |
| TGAAACTTCTCATATGTTGA+AGG | + | chr3.4:12254664-12254683 | MS.gene85503:CDS | 30.0% | |
| AACCAAACAAATGTTTCCCT+CGG | + | chr3.4:12253419-12253438 | MS.gene85503:CDS | 35.0% | |
| AGACTATAGTGTAGTAAGTC+AGG | - | chr3.4:12254581-12254600 | None:intergenic | 35.0% | |
| AGTTGTGCTAAGTATCATTG+CGG | + | chr3.4:12253508-12253527 | MS.gene85503:CDS | 35.0% | |
| ATACACCATCAACAAAAGAG+AGG | - | chr3.4:12253667-12253686 | None:intergenic | 35.0% | |
| CAATGATACTTAGCACAACT+TGG | - | chr3.4:12253508-12253527 | None:intergenic | 35.0% | |
| CTTGGTTATGAAATCAACAG+AGG | - | chr3.4:12253762-12253781 | None:intergenic | 35.0% | |
| GACGTTTGATGTATGGAAAA+CGG | + | chr3.4:12254343-12254362 | MS.gene85503:CDS | 35.0% | |
| GCTAATGCACTCTACTTTAA+AGG | + | chr3.4:12254308-12254327 | MS.gene85503:CDS | 35.0% | |
| TCTCATATGTTGAAGGAGTT+AGG | + | chr3.4:12254671-12254690 | MS.gene85503:CDS | 35.0% | |
| TGCTAGAAAACAATAAAGGG+AGG | - | chr3.4:12254040-12254059 | None:intergenic | 35.0% | |
| TTCTTTCGAGAACAGATGTT+TGG | - | chr3.4:12253450-12253469 | None:intergenic | 35.0% | |
| ! | GGAAGACAAGATTCTTTTGA+AGG | - | chr3.4:12253720-12253739 | None:intergenic | 35.0% |
| ! | TAACAAAGTGTTTCGTCACA+TGG | - | chr3.4:12253971-12253990 | None:intergenic | 35.0% |
| !! | CTCTGTTGATTTCATAACCA+AGG | + | chr3.4:12253760-12253779 | MS.gene85503:CDS | 35.0% |
| !! | GACAAGATTCTTTTGAAGGA+AGG | - | chr3.4:12253716-12253735 | None:intergenic | 35.0% |
| !!! | CTCTTTTGTTGATGGTGTAT+GGG | + | chr3.4:12253667-12253686 | MS.gene85503:CDS | 35.0% |
| !!! | TCTCTTTTGTTGATGGTGTA+TGG | + | chr3.4:12253666-12253685 | MS.gene85503:CDS | 35.0% |
| ACTGGAACCATTCTCTTTGT+TGG | + | chr3.4:12254917-12254936 | MS.gene85503:CDS | 40.0% | |
| AGAACTTCTTCCTCCAAGAT+CGG | + | chr3.4:12254259-12254278 | MS.gene85503:CDS | 40.0% | |
| AGAGTGCATTAGCAAAGATG+AGG | - | chr3.4:12254301-12254320 | None:intergenic | 40.0% | |
| ATGAATAAACTGCATCCCCT+CGG | - | chr3.4:12254426-12254445 | None:intergenic | 40.0% | |
| CAATGCTAACAGTCCATCTT+TGG | - | chr3.4:12254537-12254556 | None:intergenic | 40.0% | |
| CACTTGTCCAACAAAGAGAA+TGG | - | chr3.4:12254927-12254946 | None:intergenic | 40.0% | |
| CGAATCAGACGTTTGATGTA+TGG | + | chr3.4:12254336-12254355 | MS.gene85503:CDS | 40.0% | |
| CTGATTAGAGAAGATTCGAC+TGG | + | chr3.4:12254899-12254918 | MS.gene85503:CDS | 40.0% | |
| GAAGGAAGGTTGAAGAGAAA+GGG | - | chr3.4:12253702-12253721 | None:intergenic | 40.0% | |
| GAGGGAAACATTTGTTTGGT+TGG | - | chr3.4:12253420-12253439 | None:intergenic | 40.0% | |
| GTTAAGCTATCAACCGATCT+TGG | - | chr3.4:12254275-12254294 | None:intergenic | 40.0% | |
| TATGTTGAAGGAGTTAGGAG+TGG | + | chr3.4:12254676-12254695 | MS.gene85503:CDS | 40.0% | |
| TCATCTACTTCTACTTCAGC+AGG | - | chr3.4:12254608-12254627 | None:intergenic | 40.0% | |
| TCCTGGAGGTTTGACAAAAA+TGG | + | chr3.4:12254712-12254731 | MS.gene85503:CDS | 40.0% | |
| TGAAGGAAGGTTGAAGAGAA+AGG | - | chr3.4:12253703-12253722 | None:intergenic | 40.0% | |
| TGACTGAGCTTCCATTCAAA+AGG | - | chr3.4:12254385-12254404 | None:intergenic | 40.0% | |
| TGGAGGTTTGACAAAAATGG+CGG | + | chr3.4:12254715-12254734 | MS.gene85503:CDS | 40.0% | |
| TTTCTTCCAGATGCCAAAGA+TGG | + | chr3.4:12254521-12254540 | MS.gene85503:CDS | 40.0% | |
| TTTGAATGGAAGCTCAGTCA+AGG | + | chr3.4:12254385-12254404 | MS.gene85503:CDS | 40.0% | |
| !! | CAAAGATGGACTGTTAGCAT+TGG | + | chr3.4:12254535-12254554 | MS.gene85503:CDS | 40.0% |
| !! | TTTGGTTGGTGATTGATTCG+TGG | - | chr3.4:12253406-12253425 | None:intergenic | 40.0% |
| AAAGTCTATCGCGACACACT+CGG | - | chr3.4:12254855-12254874 | None:intergenic | 45.0% | |
| AACAAATGTTTCCCTCGGCA+TGG | + | chr3.4:12253424-12253443 | MS.gene85503:CDS | 45.0% | |
| AACAGTCCATCTTTGGCATC+TGG | - | chr3.4:12254530-12254549 | None:intergenic | 45.0% | |
| AAGCTATCAACCGATCTTGG+AGG | - | chr3.4:12254272-12254291 | None:intergenic | 45.0% | |
| AGCACAACTTGGAGCAACAA+TGG | - | chr3.4:12253497-12253516 | None:intergenic | 45.0% | |
| CTGAGAGGACGATAGAAACA+AGG | - | chr3.4:12253619-12253638 | None:intergenic | 45.0% | |
| GACGATAGAAACAAGGTGAG+AGG | - | chr3.4:12253612-12253631 | None:intergenic | 45.0% | |
| GAGCTGTGTAACACAAACCT+TGG | - | chr3.4:12253780-12253799 | None:intergenic | 45.0% | |
| GTGCATTAGCAAAGATGAGG+CGG | - | chr3.4:12254298-12254317 | None:intergenic | 45.0% | |
| TCGAGAAGCTGTTGTTGTGT+GGG | - | chr3.4:12253548-12253567 | None:intergenic | 45.0% | |
| TGCATTAGCAAAGATGAGGC+GGG | - | chr3.4:12254297-12254316 | None:intergenic | 45.0% | |
| TGCCGAGGGAAACATTTGTT+TGG | - | chr3.4:12253424-12253443 | None:intergenic | 45.0% | |
| TGGGCTGAAAAAGAGACGAA+TGG | + | chr3.4:12254227-12254246 | MS.gene85503:CDS | 45.0% | |
| TTCGTCACATGGCACATACA+TGG | - | chr3.4:12253960-12253979 | None:intergenic | 45.0% | |
| ! | GATCATCGGTGGATTTGGAA+CGG | - | chr3.4:12253577-12253596 | None:intergenic | 45.0% |
| ! | GTTGAGATCATCGGTGGATT+TGG | - | chr3.4:12253582-12253601 | None:intergenic | 45.0% |
| ! | GTTTTACCTTTCACTCCTGG+AGG | + | chr3.4:12254698-12254717 | MS.gene85503:CDS | 45.0% |
| !! | AGATGGACTGTTAGCATTGG+TGG | + | chr3.4:12254538-12254557 | MS.gene85503:CDS | 45.0% |
| !! | GTGGTTTTACCTTTCACTCC+TGG | + | chr3.4:12254695-12254714 | MS.gene85503:CDS | 45.0% |
| !! | GTTAGCATTGGTGGAGAAGT+TGG | + | chr3.4:12254547-12254566 | MS.gene85503:CDS | 45.0% |
| !!! | GCCATTTTTGTCAAACCTCC+AGG | - | chr3.4:12254716-12254735 | None:intergenic | 45.0% |
| ATCCCCTCGGTAGTCATGAA+GGG | - | chr3.4:12254413-12254432 | None:intergenic | 50.0% | |
| CCATCAACAAAAGAGAGGCG+AGG | - | chr3.4:12253662-12253681 | None:intergenic | 50.0% | |
| GAGGTTGTTGAGATCATCGG+TGG | - | chr3.4:12253588-12253607 | None:intergenic | 50.0% | |
| GGCGAGGTTGTTGAGATCAT+CGG | - | chr3.4:12253591-12253610 | None:intergenic | 50.0% | |
| GTCAAACCTCCAGGAGTGAA+AGG | - | chr3.4:12254707-12254726 | None:intergenic | 50.0% | |
| GTCGAGAAGCTGTTGTTGTG+TGG | - | chr3.4:12253549-12253568 | None:intergenic | 50.0% | |
| GTGCTAAGTATCATTGCGGC+TGG | + | chr3.4:12253512-12253531 | MS.gene85503:CDS | 50.0% | |
| GTTCCCTTCATGACTACCGA+GGG | + | chr3.4:12254407-12254426 | MS.gene85503:CDS | 50.0% | |
| TAGAAACAAGGTGAGAGGCG+AGG | - | chr3.4:12253607-12253626 | None:intergenic | 50.0% | |
| TTCCCTTCATGACTACCGAG+GGG | + | chr3.4:12254408-12254427 | MS.gene85503:CDS | 50.0% | |
| ! | CCTCGCCTCTCTTTTGTTGA+TGG | + | chr3.4:12253659-12253678 | MS.gene85503:CDS | 50.0% |
| ACAGATGTTTGGCCATGCCG+AGG | - | chr3.4:12253439-12253458 | None:intergenic | 55.0% | |
| CAGATGTTTGGCCATGCCGA+GGG | - | chr3.4:12253438-12253457 | None:intergenic | 55.0% | |
| CATCCCCTCGGTAGTCATGA+AGG | - | chr3.4:12254414-12254433 | None:intergenic | 55.0% | |
| GGTTCCCTTCATGACTACCG+AGG | + | chr3.4:12254406-12254425 | MS.gene85503:CDS | 55.0% | |
| ! | CATCGGTGGATTTGGAACGG+AGG | - | chr3.4:12253574-12253593 | None:intergenic | 55.0% |
| !! | ATCATTGCGGCTGGCTCTGA+GGG | + | chr3.4:12253521-12253540 | MS.gene85503:CDS | 55.0% |
| !! | TATCATTGCGGCTGGCTCTG+AGG | + | chr3.4:12253520-12253539 | MS.gene85503:CDS | 55.0% |
| CAGTGAAAGCGGCGTCTGAG+AGG | - | chr3.4:12253634-12253653 | None:intergenic | 60.0% | |
| GAAGCTGCTGCAGCTAGTGC+TGG | + | chr3.4:12254818-12254837 | MS.gene85503:CDS | 60.0% | |
| ! | CTCTCAGACGCCGCTTTCAC+TGG | + | chr3.4:12253632-12253651 | MS.gene85503:CDS | 60.0% |
| ! | TCAGACGCCGCTTTCACTGG+CGG | + | chr3.4:12253635-12253654 | MS.gene85503:CDS | 60.0% |
| ! | CAGACGCCGCTTTCACTGGC+GGG | + | chr3.4:12253636-12253655 | MS.gene85503:CDS | 65.0% |
| GCGAGGCCCGCCAGTGAAAG+CGG | - | chr3.4:12253645-12253664 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 12253371 | 12254967 | 12253371 | ID=MS.gene85503 |
| chr3.4 | mRNA | 12253371 | 12254967 | 12253371 | ID=MS.gene85503.t1;Parent=MS.gene85503 |
| chr3.4 | exon | 12253371 | 12253781 | 12253371 | ID=MS.gene85503.t1.exon1;Parent=MS.gene85503.t1 |
| chr3.4 | CDS | 12253371 | 12253781 | 12253371 | ID=cds.MS.gene85503.t1;Parent=MS.gene85503.t1 |
| chr3.4 | exon | 12254197 | 12254967 | 12254197 | ID=MS.gene85503.t1.exon2;Parent=MS.gene85503.t1 |
| chr3.4 | CDS | 12254197 | 12254967 | 12254197 | ID=cds.MS.gene85503.t1;Parent=MS.gene85503.t1 |
| Gene Sequence |
| Protein sequence |
