AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene85629

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85629.t1 MTR_2g039410 95.612 547 15 2 1 545 1 540 0.0 1068
MS.gene85629.t1 MTR_4g126150 70.826 545 138 9 1 543 1 526 0.0 793
MS.gene85629.t1 MTR_4g126160 58.032 498 189 6 47 543 40 518 0.0 592
MS.gene85629.t1 MTR_2g039340 55.976 502 200 9 46 542 36 521 0.0 562
MS.gene85629.t1 MTR_3g112350 50.464 539 231 11 12 543 14 523 5.50e-176 507
MS.gene85629.t1 MTR_3g036100 49.711 519 224 13 33 545 56 543 4.32e-165 480
MS.gene85629.t1 MTR_4g044110 48.444 514 226 10 40 542 36 521 1.20e-163 476
MS.gene85629.t1 MTR_7g090920 49.593 492 214 10 59 542 71 536 1.93e-160 468
MS.gene85629.t1 MTR_1g015410 42.944 496 248 12 60 545 36 506 7.42e-134 399
MS.gene85629.t1 MTR_0005s0070 49.826 287 115 6 75 355 2 265 3.39e-88 273
MS.gene85629.t1 MTR_2g039360 41.758 91 49 3 454 543 76 163 1.74e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85629.t1 AT5G56970 58.621 493 182 6 50 542 47 517 0.0 603
MS.gene85629.t1 AT1G75450 51.292 542 228 11 11 544 9 522 0.0 528
MS.gene85629.t1 AT1G75450 51.197 543 228 12 11 544 5 519 0.0 523
MS.gene85629.t1 AT4G29740 48.446 547 238 13 9 543 10 524 1.75e-175 506
MS.gene85629.t1 AT2G19500 48.069 518 235 6 34 542 9 501 1.42e-172 497
MS.gene85629.t1 AT5G56970 58.333 396 146 4 50 445 47 423 7.76e-165 475
MS.gene85629.t1 AT2G41510 46.558 552 245 14 9 542 20 539 4.04e-164 479
MS.gene85629.t1 AT2G41510 46.377 552 246 13 9 542 82 601 3.94e-163 478
MS.gene85629.t1 AT3G63440 48.081 495 220 10 61 544 60 528 1.11e-158 463
MS.gene85629.t1 AT5G21482 45.243 515 251 14 41 545 30 523 4.25e-142 421
MS.gene85629.t1 AT4G29740 50.244 410 176 7 46 445 37 428 5.93e-137 404
MS.gene85629.t1 AT2G41510 46.222 450 200 11 9 445 20 440 2.33e-128 382
MS.gene85629.t1 AT4G29740 51.768 311 122 7 46 346 37 329 7.33e-102 312

Find 112 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATAGTGCATTGGATTATT+TGG 0.147725 2.1:+48297409 MS.gene85629:CDS
AGAAGATCTCCAATTATTTA+TGG 0.166494 2.1:-48297459 None:intergenic
AAATCTAAGATTCGAGATTT+TGG 0.190122 2.1:-48298083 None:intergenic
AGAATGATCATCATAATATT+TGG 0.191913 2.1:-48297558 None:intergenic
ACTCAAGTGGGTTTGATAAT+TGG 0.218931 2.1:+48298346 MS.gene85629:CDS
CTTGGAGGATTAGGACAATT+TGG 0.239178 2.1:+48296273 MS.gene85629:CDS
GAAGCTAGTTCAATGGCTTT+TGG 0.253556 2.1:-48293917 None:intergenic
TGATGGTGTTGTTGGAATTA+AGG 0.254916 2.1:+48294168 MS.gene85629:CDS
CATGGAGTTCTTGGAGGATT+AGG 0.266390 2.1:+48296264 MS.gene85629:CDS
GAACTAGCTTCAAGTGATTA+TGG 0.267068 2.1:+48293929 MS.gene85629:CDS
GACTTACTTGTTTCTATTCA+TGG 0.273299 2.1:-48298174 None:intergenic
GATTATCTTTACTTGACTAT+TGG 0.278961 2.1:+48294307 MS.gene85629:CDS
TCATTGAGATTAACCGTTCT+TGG 0.285261 2.1:-48297376 None:intergenic
ATTCTATGATGGTCGGTTAA+AGG 0.289708 2.1:-48297488 None:intergenic
CATCAATTGGATGTTGTTAC+TGG 0.294573 2.1:+48294397 MS.gene85629:CDS
ATTAGGAGAATGAAGTATAT+TGG 0.295442 2.1:-48293776 None:intergenic
ATCAAGGACCCATAAATAAT+TGG 0.295533 2.1:+48297450 MS.gene85629:CDS
GATTAACCGTTCTTGGTCTT+TGG 0.297638 2.1:-48297369 None:intergenic
GAATTATTTCATGGAGTTCT+TGG 0.305159 2.1:+48296255 MS.gene85629:CDS
AGCTTCAATCACAAGGACTA+TGG 0.309502 2.1:+48298027 MS.gene85629:CDS
GAGGATCCTAAGGTTGGATT+TGG 0.309767 2.1:+48294196 MS.gene85629:CDS
ACTATGTCGTTTACCGTTGA+TGG 0.318033 2.1:-48293989 None:intergenic
CCAGGTGATAGAATCATTCT+TGG 0.329695 2.1:-48298531 None:intergenic
AACGTGGTATGGTTATTATT+AGG 0.338462 2.1:-48293793 None:intergenic
GAAGATCTCCAATTATTTAT+GGG 0.349964 2.1:-48297458 None:intergenic
GAAGAGTGGACAAACCATTT+TGG 0.351682 2.1:+48298462 MS.gene85629:CDS
CTCTCTAATGCTGGTATTAG+TGG 0.355144 2.1:+48294337 MS.gene85629:CDS
AATTACTAGTGTTCATCAAT+TGG 0.364831 2.1:+48294384 MS.gene85629:CDS
AACAATTCGGAATTATTTCA+TGG 0.370002 2.1:+48296246 MS.gene85629:CDS
ATGTTGGAGGGGAACAACTA+TGG 0.370599 2.1:+48294230 MS.gene85629:CDS
ATGGACTTGCACCTGTTACT+TGG 0.383367 2.1:+48294281 MS.gene85629:CDS
TTCTATGATGGTCGGTTAAA+GGG 0.389491 2.1:-48297487 None:intergenic
AGATAATCAGTCCAAGTAAC+AGG 0.390102 2.1:-48294292 None:intergenic
TGGCAATTTCCAAGCAATAT+AGG 0.395315 2.1:-48297538 None:intergenic
AATGTTAATGATGGTGTTGT+TGG 0.395744 2.1:+48294160 MS.gene85629:CDS
GGACCGTATGTTGAGTTACT+AGG 0.397694 2.1:-48297517 None:intergenic
CGAATTGTTCTCTTTAGAAC+AGG 0.402588 2.1:-48296232 None:intergenic
AGTGGACAAACCTTTCGTTA+TGG 0.403161 2.1:+48294355 MS.gene85629:CDS
AGAATGAAGTATATTGGAAA+AGG 0.406936 2.1:-48293770 None:intergenic
AAAAGTGTACGTACCCTCTT+TGG 0.410686 2.1:-48296333 None:intergenic
TTGTATGAAACACTTGAGTA+TGG 0.412739 2.1:+48294262 MS.gene85629:CDS
CTCTTCCTGTGTGCTGTAGT+GGG 0.416739 2.1:-48298445 None:intergenic
GATGGTTGGAACACTGCTGC+TGG 0.429043 2.1:-48293971 None:intergenic
GATGATATCTTCTATGCTGT+TGG 0.447156 2.1:+48298315 MS.gene85629:CDS
TTTGGATACTATGTTGATGT+TGG 0.451809 2.1:+48294214 MS.gene85629:CDS
ACTCTTCCTGTGTGCTGTAG+TGG 0.461612 2.1:-48298446 None:intergenic
ATCACTTGAAGCTAGTTCAA+TGG 0.467851 2.1:-48293924 None:intergenic
CAGGGATATAGTTCAGTCCT+TGG 0.468154 2.1:-48297938 None:intergenic
TATCTTTACTTGACTATTGG+AGG 0.470480 2.1:+48294310 MS.gene85629:CDS
ACTTACTTGTTTCTATTCAT+GGG 0.474021 2.1:-48298173 None:intergenic
AAGATATCATCCTCATCATC+TGG 0.474540 2.1:-48298303 None:intergenic
CCTCTTGCAGCTATATGAAA+AGG 0.475264 2.1:-48294046 None:intergenic
TAGTATCCAAATCCAACCTT+AGG 0.485929 2.1:-48294202 None:intergenic
GAATGAAGTATATTGGAAAA+GGG 0.490860 2.1:-48293769 None:intergenic
TTCTTGAATAGAGTGAGAAG+TGG 0.491478 2.1:+48297996 MS.gene85629:CDS
TAGTGATGATTTCCATTGCT+CGG 0.495531 2.1:-48293837 None:intergenic
TGATGAACACTAGTAATTTG+AGG 0.495706 2.1:-48294379 None:intergenic
CATTACCACAGGACCTGTCT+TGG 0.498772 2.1:+48298145 MS.gene85629:CDS
GGTTGATATTAAACGTGGTA+TGG 0.500255 2.1:-48293804 None:intergenic
GTACGTACCCTCTTTGGTGC+TGG 0.509757 2.1:-48296327 None:intergenic
ACATACGGTCCTATATTGCT+TGG 0.513255 2.1:+48297529 MS.gene85629:CDS
CATATAGCTGCAAGAGGACA+AGG 0.516602 2.1:+48294052 MS.gene85629:CDS
AGTGCATTGGATTATTTGGA+AGG 0.516728 2.1:+48297413 MS.gene85629:CDS
ATTGGATTATTTGGAAGGGA+TGG 0.520358 2.1:+48297418 MS.gene85629:CDS
TATGGGATGTTCCTCATCCA+TGG 0.526098 2.1:+48298045 MS.gene85629:CDS
GCTTCAATCACAAGGACTAT+GGG 0.527675 2.1:+48298028 MS.gene85629:CDS
GGTGTTGTTGTTGACATGAA+AGG 0.527755 2.1:+48294109 MS.gene85629:CDS
GGGATGGTATTAATGAATCA+AGG 0.529318 2.1:+48297434 MS.gene85629:CDS
ATCTTTACTTGACTATTGGA+GGG 0.531975 2.1:+48294311 MS.gene85629:CDS
TTCATGGGATAAACCAAGAC+AGG 0.538621 2.1:-48298158 None:intergenic
GATACTATGTTGATGTTGGA+GGG 0.539216 2.1:+48294218 MS.gene85629:CDS
TTCCCTAGTAACTCAACATA+CGG 0.539246 2.1:+48297514 MS.gene85629:CDS
GTGTTGTTGTTGACATGAAA+GGG 0.541577 2.1:+48294110 MS.gene85629:CDS
CTAGGGAAAGTATTCTATGA+TGG 0.542137 2.1:-48297499 None:intergenic
CCAAGAATGATTCTATCACC+TGG 0.543424 2.1:+48298531 MS.gene85629:CDS
GACCGTATGTTGAGTTACTA+GGG 0.545234 2.1:-48297516 None:intergenic
TTATTTCATGGAGTTCTTGG+AGG 0.545601 2.1:+48296258 MS.gene85629:CDS
TTGTTGAAGATTCTTTGTCC+AGG 0.547679 2.1:-48298549 None:intergenic
GGATACTATGTTGATGTTGG+AGG 0.550954 2.1:+48294217 MS.gene85629:CDS
CAAGGACTGAACTATATCCC+TGG 0.552415 2.1:+48297939 MS.gene85629:CDS
CTGTTCTAAAGAGAACAATT+CGG 0.554065 2.1:+48296233 MS.gene85629:CDS
TGCCATAGCTTGTCCTCGTG+TGG 0.560100 2.1:-48294080 None:intergenic
GACAATTTGGAATTATAACA+AGG 0.561322 2.1:+48296286 MS.gene85629:CDS
ATGGTTGGAACACTGCTGCT+GGG 0.566755 2.1:-48293970 None:intergenic
TGTCGTTTACCGTTGATGGT+TGG 0.568467 2.1:-48293985 None:intergenic
GTGCATTGGATTATTTGGAA+GGG 0.570208 2.1:+48297414 MS.gene85629:CDS
GAACGGTTAATCTCAATGAA+AGG 0.571059 2.1:+48297380 MS.gene85629:CDS
GGAGGGACACTCTCTAATGC+TGG 0.573132 2.1:+48294328 MS.gene85629:CDS
GGTATGAACATATTAAGCCA+TGG 0.577826 2.1:-48298062 None:intergenic
AACATATTAAGCCATGGATG+AGG 0.582200 2.1:-48298056 None:intergenic
TTCTGAAAACAATGTGAACA+AGG 0.587536 2.1:+48297577 MS.gene85629:CDS
AGCAGTGTTCCAACCATCAA+CGG 0.592026 2.1:+48293976 MS.gene85629:CDS
ACTACAGCACACAGGAAGAG+TGG 0.593070 2.1:+48298448 MS.gene85629:CDS
CCTACGGTTGATATTAAACG+TGG 0.599631 2.1:-48293809 None:intergenic
AGCAACAATACCAGATGATG+AGG 0.606041 2.1:+48298293 MS.gene85629:CDS
TCTTGAGCCAGCACCAAAGA+GGG 0.608805 2.1:+48296320 MS.gene85629:CDS
TCTTCCTGTGTGCTGTAGTG+GGG 0.609971 2.1:-48298444 None:intergenic
TTCCACACGAGGACAAGCTA+TGG 0.612982 2.1:+48294078 MS.gene85629:CDS
ACAATTTGGAATTATAACAA+GGG 0.614455 2.1:+48296287 MS.gene85629:CDS
TTTGTGGTGAATAATTCTGT+TGG 0.614887 2.1:-48293860 None:intergenic
GGAAAGTATTCTATGATGGT+CGG 0.619256 2.1:-48297495 None:intergenic
CTCTTGAGCCAGCACCAAAG+AGG 0.621715 2.1:+48296319 MS.gene85629:CDS
CCGTAGGTAAAACCGAGCAA+TGG 0.627493 2.1:+48293825 MS.gene85629:CDS
AATTTGAGGACCATAACGAA+AGG 0.636962 2.1:-48294365 None:intergenic
GGACAAGCTATGGCACGTGA+TGG 0.637248 2.1:+48294088 MS.gene85629:CDS
GAGTTGAAGCTTCAATCACA+AGG 0.651447 2.1:+48298020 MS.gene85629:CDS
ATACTATGTTGATGTTGGAG+GGG 0.660327 2.1:+48294219 MS.gene85629:CDS
ATAAACCAAGACAGGTCCTG+TGG 0.671706 2.1:-48298150 None:intergenic
CTGCTGGGAATTCATGTACG+AGG 0.686402 2.1:-48293955 None:intergenic
CCACGTTTAATATCAACCGT+AGG 0.694085 2.1:+48293809 MS.gene85629:CDS
TCTTCCCCACTACAGCACAC+AGG 0.695759 2.1:+48298440 MS.gene85629:CDS
GGACAAGGTCATTCCACACG+AGG 0.715309 2.1:+48294067 MS.gene85629:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATAAAAATGTTAATGA+TGG + chr2.1:48294151-48294170 MS.gene85629:CDS 10.0%
!! AATTTAGATTATTATAGTTA+AGG - chr2.1:48295863-48295882 None:intergenic 10.0%
!! TTATAAAAAAAACATATGTT+AGG + chr2.1:48295178-48295197 MS.gene85629:intron 10.0%
!!! TTAAATGTTTTTTTAATCTT+AGG - chr2.1:48296584-48296603 None:intergenic 10.0%
!! AACAAAAATTTAAAAAGTAG+AGG - chr2.1:48295543-48295562 None:intergenic 15.0%
!! AACCAAAAAAGTTTATTTAT+CGG + chr2.1:48294762-48294781 MS.gene85629:intron 15.0%
!! AATAAAAGAATGAATTTAGA+TGG - chr2.1:48294447-48294466 None:intergenic 15.0%
!! AGAAAATATTAATCAAGAAT+TGG - chr2.1:48295776-48295795 None:intergenic 15.0%
!! ATAAGTTAGTAGTATTAATT+AGG - chr2.1:48295338-48295357 None:intergenic 15.0%
!! ATTAAGTTTATTTCAACTAT+TGG - chr2.1:48297153-48297172 None:intergenic 15.0%
!! ATTTGTTCAAGTATATATAA+AGG - chr2.1:48296061-48296080 None:intergenic 15.0%
!! TAAGTTAGTAGTATTAATTA+GGG - chr2.1:48295337-48295356 None:intergenic 15.0%
!! TATATATACTTGAACAAATA+AGG + chr2.1:48296062-48296081 MS.gene85629:intron 15.0%
!! TATATGTCATATCTTTATAT+CGG + chr2.1:48296846-48296865 MS.gene85629:intron 15.0%
!! TTTAAATCGTTATGAAATTT+AGG + chr2.1:48297762-48297781 MS.gene85629:intron 15.0%
!! TTTAATACATATAGAAACAA+AGG + chr2.1:48295379-48295398 MS.gene85629:intron 15.0%
!!! AAAAAAGTTTTCCATTTTTT+AGG - chr2.1:48298489-48298508 None:intergenic 15.0%
!!! AATTTTTCAAAAACAAGAAA+GGG - chr2.1:48295712-48295731 None:intergenic 15.0%
!!! ATAATTTTTGGTTATTTTTC+AGG + chr2.1:48296192-48296211 MS.gene85629:intron 15.0%
!!! CTATTGATTATACATATTAT+TGG + chr2.1:48295810-48295829 MS.gene85629:intron 15.0%
!!! CTTAATCAAGTTATAATTTT+TGG + chr2.1:48296180-48296199 MS.gene85629:intron 15.0%
!! AAGAAATATGAAAAAAGCAA+AGG + chr2.1:48295461-48295480 MS.gene85629:intron 20.0%
!! AAGTTAGTAGTATTAATTAG+GGG - chr2.1:48295336-48295355 None:intergenic 20.0%
!! AATGGTTTATCTAAATCATA+CGG - chr2.1:48295070-48295089 None:intergenic 20.0%
!! ACTTTATCACTATAATAACA+TGG + chr2.1:48297229-48297248 MS.gene85629:intron 20.0%
!! AGAAATATGAAAAAAGCAAA+GGG + chr2.1:48295462-48295481 MS.gene85629:intron 20.0%
!! AGAATGATCATCATAATATT+TGG - chr2.1:48297561-48297580 None:intergenic 20.0%
!! ATAGTGTAATACAGTTATAT+AGG - chr2.1:48295607-48295626 None:intergenic 20.0%
!! ATATTTGTTTATGTTTGTGT+AGG + chr2.1:48297899-48297918 MS.gene85629:intron 20.0%
!! ATTATTTAACAAACTCTTGT+GGG - chr2.1:48295914-48295933 None:intergenic 20.0%
!! CAATTCTCATATATAATTCT+TGG - chr2.1:48296555-48296574 None:intergenic 20.0%
!! CTTACAATTATTATTGTCAA+AGG - chr2.1:48296639-48296658 None:intergenic 20.0%
!! TATTATTTAACAAACTCTTG+TGG - chr2.1:48295915-48295934 None:intergenic 20.0%
!! TGTGTTTGAAAAAATAAATG+TGG + chr2.1:48296608-48296627 MS.gene85629:intron 20.0%
!! TTAAAGTGGTATTAAATAGT+AGG - chr2.1:48297645-48297664 None:intergenic 20.0%
!! TTACATAATGTTTCTTTCTT+TGG + chr2.1:48294934-48294953 MS.gene85629:intron 20.0%
!! TTTAGATAAACCATTTCAAA+TGG + chr2.1:48295075-48295094 MS.gene85629:intron 20.0%
!! TTTATAAAAAGAAGCTAGAA+AGG - chr2.1:48295165-48295184 None:intergenic 20.0%
!!! AATGGTGAATTTCATTTTAT+TGG + chr2.1:48297300-48297319 MS.gene85629:intron 20.0%
!!! ACAATTTGGAATTATAACAA+GGG + chr2.1:48296287-48296306 MS.gene85629:CDS 20.0%
!!! ACTAGACCAAAAATAAATTT+TGG - chr2.1:48295039-48295058 None:intergenic 20.0%
!!! AGAATTCCATTTTTTTTTTG+TGG - chr2.1:48294712-48294731 None:intergenic 20.0%
!!! CGAATCTTAGATTTTAATTT+CGG + chr2.1:48298092-48298111 MS.gene85629:CDS 20.0%
!!! GAAACATTATGTAAAAGTTT+TGG - chr2.1:48294928-48294947 None:intergenic 20.0%
!!! GAATTCCATTTTTTTTTTGT+GGG - chr2.1:48294711-48294730 None:intergenic 20.0%
!!! GAATTTTTCAAAAACAAGAA+AGG - chr2.1:48295713-48295732 None:intergenic 20.0%
!!! GATATCAAATTACTTTTTTG+AGG + chr2.1:48294604-48294623 MS.gene85629:intron 20.0%
!!! TAAAGCTTGATTTTGATATA+TGG - chr2.1:48296459-48296478 None:intergenic 20.0%
!!! TCAATGTTCAATTTTTATGT+TGG + chr2.1:48294482-48294501 MS.gene85629:intron 20.0%
!!! TTTTTTCATAATGAAATCCA+GGG - chr2.1:48297959-48297978 None:intergenic 20.0%
!!! TTTTTTTCATAATGAAATCC+AGG - chr2.1:48297960-48297979 None:intergenic 20.0%
!!! TTTTTTTTCTCCATTTGAAA+TGG - chr2.1:48295088-48295107 None:intergenic 20.0%
! AAATAGTGCATTGGATTATT+TGG + chr2.1:48297409-48297428 MS.gene85629:CDS 25.0%
! AACAATTCGGAATTATTTCA+TGG + chr2.1:48296246-48296265 MS.gene85629:CDS 25.0%
! AAGAAAAATAATGTGAACCA+AGG - chr2.1:48298209-48298228 None:intergenic 25.0%
! AATAAAAACATGTCATGCAT+TGG - chr2.1:48296693-48296712 None:intergenic 25.0%
! AATTACTAGTGTTCATCAAT+TGG + chr2.1:48294384-48294403 MS.gene85629:CDS 25.0%
! AGAAGATCTCCAATTATTTA+TGG - chr2.1:48297462-48297481 None:intergenic 25.0%
! AGAATGAAGTATATTGGAAA+AGG - chr2.1:48293773-48293792 None:intergenic 25.0%
! AGAATTGGGATTATTATGAA+TGG - chr2.1:48296414-48296433 None:intergenic 25.0%
! AGTAAGTCTTTAATTAACCT+TGG + chr2.1:48298189-48298208 MS.gene85629:intron 25.0%
! ATATTATCAACCAGATTCAT+CGG - chr2.1:48297000-48297019 None:intergenic 25.0%
! ATCAACGAGTAAAATTAAAG+TGG - chr2.1:48297659-48297678 None:intergenic 25.0%
! ATTAGGAGAATGAAGTATAT+TGG - chr2.1:48293779-48293798 None:intergenic 25.0%
! ATTTAACAATGTTGTTGTCT+TGG + chr2.1:48295567-48295586 MS.gene85629:intron 25.0%
! GAAAAATATTGAATTAGCGA+CGG - chr2.1:48297808-48297827 None:intergenic 25.0%
! GAAGATCTCCAATTATTTAT+GGG - chr2.1:48297461-48297480 None:intergenic 25.0%
! GAATGAAGTATATTGGAAAA+GGG - chr2.1:48293772-48293791 None:intergenic 25.0%
! GATTATCTTTACTTGACTAT+TGG + chr2.1:48294307-48294326 MS.gene85629:CDS 25.0%
! GCATCTAGTAATTTGAAAAA+GGG - chr2.1:48295288-48295307 None:intergenic 25.0%
! GGACAAAAATAAAGTCAAAT+GGG - chr2.1:48295254-48295273 None:intergenic 25.0%
! GGTATTAAATAGTAGGTAAT+AGG - chr2.1:48297638-48297657 None:intergenic 25.0%
! GTCTTTATGTCTTAAGTTAT+AGG + chr2.1:48295658-48295677 MS.gene85629:intron 25.0%
! TATAGAAACAAAGGACAATA+TGG + chr2.1:48295388-48295407 MS.gene85629:intron 25.0%
! TATTTACTACTACCAATTTG+TGG + chr2.1:48295624-48295643 MS.gene85629:intron 25.0%
! TGAAAAAGGGTTTAGATTTA+GGG - chr2.1:48295275-48295294 None:intergenic 25.0%
! TGACCTTAAAATTATAGACA+TGG - chr2.1:48295837-48295856 None:intergenic 25.0%
! TGCATCTAGTAATTTGAAAA+AGG - chr2.1:48295289-48295308 None:intergenic 25.0%
! TGCTTATAATGATAACTAGA+AGG + chr2.1:48297064-48297083 MS.gene85629:intron 25.0%
! TGTTCTTATCAGTTTATATG+TGG + chr2.1:48294566-48294585 MS.gene85629:intron 25.0%
! TTGAAAAAGGGTTTAGATTT+AGG - chr2.1:48295276-48295295 None:intergenic 25.0%
! TTGCAATGTATATCAACTAA+TGG + chr2.1:48297282-48297301 MS.gene85629:intron 25.0%
! TTTAACAATGTTGTTGTCTT+GGG + chr2.1:48295568-48295587 MS.gene85629:intron 25.0%
!! ATTTTATTGGCAGGTTAAAT+GGG + chr2.1:48297313-48297332 MS.gene85629:intron 25.0%
!! GACAATTTGGAATTATAACA+AGG + chr2.1:48296286-48296305 MS.gene85629:CDS 25.0%
!! TACCCTTTTCATAAACTAAA+CGG + chr2.1:48297712-48297731 MS.gene85629:intron 25.0%
!! TATTAATTAGGGGTATGTTT+AGG - chr2.1:48295326-48295345 None:intergenic 25.0%
!! TTCCGTTTAGTTTATGAAAA+GGG - chr2.1:48297717-48297736 None:intergenic 25.0%
!! TTTCCGTTTAGTTTATGAAA+AGG - chr2.1:48297718-48297737 None:intergenic 25.0%
!!! AAATCTAAGATTCGAGATTT+TGG - chr2.1:48298086-48298105 None:intergenic 25.0%
!!! AAGTTTGTTATGAAGTGTTT+TGG + chr2.1:48295010-48295029 MS.gene85629:intron 25.0%
!!! ACTTACTTGTTTCTATTCAT+GGG - chr2.1:48298176-48298195 None:intergenic 25.0%
!!! AGATATGTTGGAATTTTTTG+TGG - chr2.1:48293879-48293898 None:intergenic 25.0%
!!! AGTTTGTTATGAAGTGTTTT+GGG + chr2.1:48295011-48295030 MS.gene85629:intron 25.0%
!!! ATCAAATTACTTTTTTGAGG+AGG + chr2.1:48294607-48294626 MS.gene85629:intron 25.0%
!!! CTCCGATAAATAAACTTTTT+TGG - chr2.1:48294767-48294786 None:intergenic 25.0%
!!! TATGAGTTTTTGAGATATGT+TGG - chr2.1:48293891-48293910 None:intergenic 25.0%
!!! TTTGGTTATTTTTCAGGAAA+AGG + chr2.1:48296198-48296217 MS.gene85629:intron 25.0%
!!! TTTTATGTTGGTTTTCAACT+TGG + chr2.1:48294494-48294513 MS.gene85629:intron 25.0%
AACGTGGTATGGTTATTATT+AGG - chr2.1:48293796-48293815 None:intergenic 30.0%
AATGTGACAACGTTAAGAAT+TGG - chr2.1:48296429-48296448 None:intergenic 30.0%
AGGAAACAAAAATAGTGCAT+TGG + chr2.1:48297400-48297419 MS.gene85629:CDS 30.0%
ATAAGCGAAAACTCAATTGT+TGG + chr2.1:48296961-48296980 MS.gene85629:intron 30.0%
ATAGTCTTCTAACACATGAA+GGG + chr2.1:48296719-48296738 MS.gene85629:intron 30.0%
ATCAAGGACCCATAAATAAT+TGG + chr2.1:48297450-48297469 MS.gene85629:CDS 30.0%
ATCTTTACTTGACTATTGGA+GGG + chr2.1:48294311-48294330 MS.gene85629:CDS 30.0%
ATGTGACAACGTTAAGAATT+GGG - chr2.1:48296428-48296447 None:intergenic 30.0%
CAAAAATAAAGTCAAATGGG+TGG - chr2.1:48295251-48295270 None:intergenic 30.0%
CAGTTTATATGTGGTCAAAT+GGG + chr2.1:48294575-48294594 MS.gene85629:intron 30.0%
CTAACAATAGTGTACAATGA+CGG - chr2.1:48296515-48296534 None:intergenic 30.0%
CTATGTATTGTAGCTACAAT+AGG + chr2.1:48296784-48296803 MS.gene85629:intron 30.0%
GAATTATTTCATGGAGTTCT+TGG + chr2.1:48296255-48296274 MS.gene85629:CDS 30.0%
GGGACAAAAATAAAGTCAAA+TGG - chr2.1:48295255-48295274 None:intergenic 30.0%
GTTTATTTATCGGAGTACAA+CGG + chr2.1:48294772-48294791 MS.gene85629:intron 30.0%
TAAGCGAAAACTCAATTGTT+GGG + chr2.1:48296962-48296981 MS.gene85629:intron 30.0%
TAATAGTGACTTAAGGTGTA+AGG - chr2.1:48296942-48296961 None:intergenic 30.0%
TACCAATTTGTGGTTGTTAA+GGG + chr2.1:48295634-48295653 MS.gene85629:intron 30.0%
TATAGTCTTCTAACACATGA+AGG + chr2.1:48296718-48296737 MS.gene85629:intron 30.0%
TATCTTTACTTGACTATTGG+AGG + chr2.1:48294310-48294329 MS.gene85629:CDS 30.0%
TCAGTTTATATGTGGTCAAA+TGG + chr2.1:48294574-48294593 MS.gene85629:intron 30.0%
TCATTGTACACTATTGTTAG+TGG + chr2.1:48296515-48296534 MS.gene85629:intron 30.0%
TCGCTTATAATAGTGACTTA+AGG - chr2.1:48296949-48296968 None:intergenic 30.0%
TGATGAACACTAGTAATTTG+AGG - chr2.1:48294382-48294401 None:intergenic 30.0%
TTAACATTGCTCTTCTTGTA+CGG - chr2.1:48294808-48294827 None:intergenic 30.0%
TTGGGATTATTATGAATGGT+TGG - chr2.1:48296410-48296429 None:intergenic 30.0%
TTGTATGAAACACTTGAGTA+TGG + chr2.1:48294262-48294281 MS.gene85629:CDS 30.0%
TTTATTTATCGGAGTACAAC+GGG + chr2.1:48294773-48294792 MS.gene85629:intron 30.0%
TTTGGATACTATGTTGATGT+TGG + chr2.1:48294214-48294233 MS.gene85629:CDS 30.0%
TTTGTGGTGAATAATTCTGT+TGG - chr2.1:48293863-48293882 None:intergenic 30.0%
! ATATACCTTTCTCGACTTTT+TGG + chr2.1:48294523-48294542 MS.gene85629:intron 30.0%
! CATTTTATTGGCAGGTTAAA+TGG + chr2.1:48297312-48297331 MS.gene85629:intron 30.0%
! GGGAGTATATGATAAAGATT+TGG + chr2.1:48295505-48295524 MS.gene85629:intron 30.0%
! GGTCCATGTCTATAATTTTA+AGG + chr2.1:48295831-48295850 MS.gene85629:intron 30.0%
! GTGAATTTCATTTTATTGGC+AGG + chr2.1:48297304-48297323 MS.gene85629:intron 30.0%
! TGCAATTTTGTAATCATGCT+GGG + chr2.1:48298400-48298419 MS.gene85629:CDS 30.0%
! TGTTGGAATTAAGGTTTTTG+AGG + chr2.1:48294177-48294196 MS.gene85629:CDS 30.0%
! TTCTGAAAACAATGTGAACA+AGG + chr2.1:48297577-48297596 MS.gene85629:CDS 30.0%
! TTGCAATTTTGTAATCATGC+TGG + chr2.1:48298399-48298418 MS.gene85629:CDS 30.0%
! TTTTTACCAAAGACCAAGAA+CGG + chr2.1:48297363-48297382 MS.gene85629:CDS 30.0%
!! AATGTTAATGATGGTGTTGT+TGG + chr2.1:48294160-48294179 MS.gene85629:CDS 30.0%
!! ACCATTTTGGTCCTAAAAAA+TGG + chr2.1:48298475-48298494 MS.gene85629:CDS 30.0%
!! CTGTTCTAAAGAGAACAATT+CGG + chr2.1:48296233-48296252 MS.gene85629:CDS 30.0%
!! GACTTACTTGTTTCTATTCA+TGG - chr2.1:48298177-48298196 None:intergenic 30.0%
!! TGGGGACCAAAATTTATTTT+TGG + chr2.1:48295030-48295049 MS.gene85629:intron 30.0%
!!! GTTTGTTATGAAGTGTTTTG+GGG + chr2.1:48295012-48295031 MS.gene85629:intron 30.0%
!!! TCCATTTTTTAGGACCAAAA+TGG - chr2.1:48298479-48298498 None:intergenic 30.0%
!!! TTGGTGTTTTGTTTTTTCCT+CGG - chr2.1:48294909-48294928 None:intergenic 30.0%
AACATATTAAGCCATGGATG+AGG - chr2.1:48298059-48298078 None:intergenic 35.0%
AAGATATCATCCTCATCATC+TGG - chr2.1:48298306-48298325 None:intergenic 35.0%
AATTTGAGGACCATAACGAA+AGG - chr2.1:48294368-48294387 None:intergenic 35.0%
AGATAATCAGTCCAAGTAAC+AGG - chr2.1:48294295-48294314 None:intergenic 35.0%
AGCAAAGGGATGTTACATTA+AGG + chr2.1:48295476-48295495 MS.gene85629:intron 35.0%
AGTGCATTGGATTATTTGGA+AGG + chr2.1:48297413-48297432 MS.gene85629:CDS 35.0%
ATACTATGTTGATGTTGGAG+GGG + chr2.1:48294219-48294238 MS.gene85629:CDS 35.0%
ATCACTTGAAGCTAGTTCAA+TGG - chr2.1:48293927-48293946 None:intergenic 35.0%
ATTCTATGATGGTCGGTTAA+AGG - chr2.1:48297491-48297510 None:intergenic 35.0%
ATTGGATTATTTGGAAGGGA+TGG + chr2.1:48297418-48297437 MS.gene85629:CDS 35.0%
CAAAAACGTAACATTACCAC+AGG + chr2.1:48298134-48298153 MS.gene85629:CDS 35.0%
CAAATGGGTGGTTAGATATA+GGG - chr2.1:48295239-48295258 None:intergenic 35.0%
CAATGCACAGTGACATATAA+AGG + chr2.1:48295135-48295154 MS.gene85629:intron 35.0%
CATCAATTGGATGTTGTTAC+TGG + chr2.1:48294397-48294416 MS.gene85629:CDS 35.0%
CATGTGTTAGAAGACTATAG+TGG - chr2.1:48296717-48296736 None:intergenic 35.0%
CATTGAATAACCGATGAATC+TGG + chr2.1:48296987-48297006 MS.gene85629:intron 35.0%
CGCATCCCACAAAAAAAAAA+TGG + chr2.1:48294703-48294722 MS.gene85629:intron 35.0%
CTACCAATTTGTGGTTGTTA+AGG + chr2.1:48295633-48295652 MS.gene85629:intron 35.0%
CTTTATATGTCACTGTGCAT+TGG - chr2.1:48295137-48295156 None:intergenic 35.0%
CTTTCGAGCATATGATTTAG+TGG - chr2.1:48294886-48294905 None:intergenic 35.0%
GAACGGTTAATCTCAATGAA+AGG + chr2.1:48297380-48297399 MS.gene85629:CDS 35.0%
GATACTATGTTGATGTTGGA+GGG + chr2.1:48294218-48294237 MS.gene85629:CDS 35.0%
GATGATATCTTCTATGCTGT+TGG + chr2.1:48298315-48298334 MS.gene85629:CDS 35.0%
GCAAAGGGATGTTACATTAA+GGG + chr2.1:48295477-48295496 MS.gene85629:intron 35.0%
GGGATGGTATTAATGAATCA+AGG + chr2.1:48297434-48297453 MS.gene85629:CDS 35.0%
GGTATGAACATATTAAGCCA+TGG - chr2.1:48298065-48298084 None:intergenic 35.0%
GTGCATTGGATTATTTGGAA+GGG + chr2.1:48297414-48297433 MS.gene85629:CDS 35.0%
TAACATTGCTCTTCTTGTAC+GGG - chr2.1:48294807-48294826 None:intergenic 35.0%
TAGTATCCAAATCCAACCTT+AGG - chr2.1:48294205-48294224 None:intergenic 35.0%
TAGTCTTCTAACACATGAAG+GGG + chr2.1:48296720-48296739 MS.gene85629:intron 35.0%
TAGTGATGATTTCCATTGCT+CGG - chr2.1:48293840-48293859 None:intergenic 35.0%
TCAAATGGGTGGTTAGATAT+AGG - chr2.1:48295240-48295259 None:intergenic 35.0%
TCATTGAGATTAACCGTTCT+TGG - chr2.1:48297379-48297398 None:intergenic 35.0%
TGGCAATTTCCAAGCAATAT+AGG - chr2.1:48297541-48297560 None:intergenic 35.0%
TTATTTCATGGAGTTCTTGG+AGG + chr2.1:48296258-48296277 MS.gene85629:CDS 35.0%
TTCCCTAGTAACTCAACATA+CGG + chr2.1:48297514-48297533 MS.gene85629:CDS 35.0%
TTCTATGATGGTCGGTTAAA+GGG - chr2.1:48297490-48297509 None:intergenic 35.0%
TTCTTGAATAGAGTGAGAAG+TGG + chr2.1:48297996-48298015 MS.gene85629:CDS 35.0%
TTGTTGAAGATTCTTTGTCC+AGG - chr2.1:48298552-48298571 None:intergenic 35.0%
! ACAATCTTCCATGTGCATTT+TGG + chr2.1:48295107-48295126 MS.gene85629:intron 35.0%
! ACTCAAGTGGGTTTGATAAT+TGG + chr2.1:48298346-48298365 MS.gene85629:CDS 35.0%
! GAACTAGCTTCAAGTGATTA+TGG + chr2.1:48293929-48293948 MS.gene85629:CDS 35.0%
! GGTTGATATTAAACGTGGTA+TGG - chr2.1:48293807-48293826 None:intergenic 35.0%
! GTACGTACACTTTTGTCTTT+AGG + chr2.1:48296342-48296361 MS.gene85629:intron 35.0%
! GTGTTGTTGTTGACATGAAA+GGG + chr2.1:48294110-48294129 MS.gene85629:CDS 35.0%
! TTGGATTTTTGCACTCAAGT+GGG + chr2.1:48298334-48298353 MS.gene85629:CDS 35.0%
!! AGTTGAGTTGTTAAGCCTTT+TGG - chr2.1:48296135-48296154 None:intergenic 35.0%
!! ATCTCCTCTGTTTTTCAGAT+GGG + chr2.1:48298257-48298276 MS.gene85629:intron 35.0%
!! CGAATTGTTCTCTTTAGAAC+AGG - chr2.1:48296235-48296254 None:intergenic 35.0%
!! CTAGGGAAAGTATTCTATGA+TGG - chr2.1:48297502-48297521 None:intergenic 35.0%
!! GAAATTCAAGTTTTGCTCCA+AGG + chr2.1:48297921-48297940 MS.gene85629:CDS 35.0%
!! GGAAAGTATTCTATGATGGT+CGG - chr2.1:48297498-48297517 None:intergenic 35.0%
!! GTTGAGTTGTTAAGCCTTTT+GGG - chr2.1:48296134-48296153 None:intergenic 35.0%
!! TAAGGTTTTTGAGGATCCTA+AGG + chr2.1:48294186-48294205 MS.gene85629:CDS 35.0%
!! TGATGGTGTTGTTGGAATTA+AGG + chr2.1:48294168-48294187 MS.gene85629:CDS 35.0%
!! TTGAGTTGTTAAGCCTTTTG+GGG - chr2.1:48296133-48296152 None:intergenic 35.0%
!!! ATTACTTTTTTGAGGAGGAG+AGG + chr2.1:48294612-48294631 MS.gene85629:intron 35.0%
ACATACGGTCCTATATTGCT+TGG + chr2.1:48297529-48297548 MS.gene85629:CDS 40.0%
ACTATGTCGACAATGTGAAC+TGG - chr2.1:48295748-48295767 None:intergenic 40.0%
AGCAACAATACCAGATGATG+AGG + chr2.1:48298293-48298312 MS.gene85629:CDS 40.0%
AGCTTCAATCACAAGGACTA+TGG + chr2.1:48298027-48298046 MS.gene85629:CDS 40.0%
AGGGATGTTACATTAAGGGA+CGG + chr2.1:48295481-48295500 MS.gene85629:intron 40.0%
AGTGGACAAACCTTTCGTTA+TGG + chr2.1:48294355-48294374 MS.gene85629:CDS 40.0%
AGTTAGCAAGTGATTTCCAC+AGG + chr2.1:48295684-48295703 MS.gene85629:intron 40.0%
ATGTTACATTAAGGGACGGA+GGG + chr2.1:48295485-48295504 MS.gene85629:intron 40.0%
CCAAGAATGATTCTATCACC+TGG + chr2.1:48298531-48298550 MS.gene85629:CDS 40.0%
CCACGTTTAATATCAACCGT+AGG + chr2.1:48293809-48293828 MS.gene85629:CDS 40.0%
CCAGGTGATAGAATCATTCT+TGG - chr2.1:48298534-48298553 None:intergenic 40.0%
CCTCTTGCAGCTATATGAAA+AGG - chr2.1:48294049-48294068 None:intergenic 40.0%
CTCCCTTAACAACCACAAAT+TGG - chr2.1:48295639-48295658 None:intergenic 40.0%
CTCTCTAATGCTGGTATTAG+TGG + chr2.1:48294337-48294356 MS.gene85629:CDS 40.0%
CTTAGCCAAAAAGTCGAGAA+AGG - chr2.1:48294531-48294550 None:intergenic 40.0%
CTTGGAGGATTAGGACAATT+TGG + chr2.1:48296273-48296292 MS.gene85629:CDS 40.0%
GACCGTATGTTGAGTTACTA+GGG - chr2.1:48297519-48297538 None:intergenic 40.0%
GAGTTGAAGCTTCAATCACA+AGG + chr2.1:48298020-48298039 MS.gene85629:CDS 40.0%
GCTTCAATCACAAGGACTAT+GGG + chr2.1:48298028-48298047 MS.gene85629:CDS 40.0%
GGATACTATGTTGATGTTGG+AGG + chr2.1:48294217-48294236 MS.gene85629:CDS 40.0%
GTTAGCAAGTGATTTCCACA+GGG + chr2.1:48295685-48295704 MS.gene85629:intron 40.0%
GTTCTGCAACCTTTCATAGA+AGG - chr2.1:48294861-48294880 None:intergenic 40.0%
TTCATGGGATAAACCAAGAC+AGG - chr2.1:48298161-48298180 None:intergenic 40.0%
TTGGAAAGCCAAAATGCACA+TGG - chr2.1:48295118-48295137 None:intergenic 40.0%
TTGTCCCATCTGAAAAACAG+AGG - chr2.1:48298264-48298283 None:intergenic 40.0%
! AAAAGTGTACGTACCCTCTT+TGG - chr2.1:48296336-48296355 None:intergenic 40.0%
! ACTATGTCGTTTACCGTTGA+TGG - chr2.1:48293992-48294011 None:intergenic 40.0%
! CCTACGGTTGATATTAAACG+TGG - chr2.1:48293812-48293831 None:intergenic 40.0%
! CCTTTTCATATAGCTGCAAG+AGG + chr2.1:48294046-48294065 MS.gene85629:CDS 40.0%
! GAAGAGTGGACAAACCATTT+TGG + chr2.1:48298462-48298481 MS.gene85629:CDS 40.0%
! GAAGCTAGTTCAATGGCTTT+TGG - chr2.1:48293920-48293939 None:intergenic 40.0%
! GATTAACCGTTCTTGGTCTT+TGG - chr2.1:48297372-48297391 None:intergenic 40.0%
! GTTGGATTTTTGCACTCAAG+TGG + chr2.1:48298333-48298352 MS.gene85629:CDS 40.0%
! TGAGTTGTTAAGCCTTTTGG+GGG - chr2.1:48296132-48296151 None:intergenic 40.0%
!! CACTTCGATAGCTTGCTATT+GGG + chr2.1:48294636-48294655 MS.gene85629:intron 40.0%
!! CATCTCCTCTGTTTTTCAGA+TGG + chr2.1:48298256-48298275 MS.gene85629:intron 40.0%
!! GGTGTTGTTGTTGACATGAA+AGG + chr2.1:48294109-48294128 MS.gene85629:CDS 40.0%
!! GTTTTTGAGGATCCTAAGGT+TGG + chr2.1:48294190-48294209 MS.gene85629:CDS 40.0%
!! TCACTTCGATAGCTTGCTAT+TGG + chr2.1:48294635-48294654 MS.gene85629:intron 40.0%
AAAACAAGAAAGGGACCCTG+TGG - chr2.1:48295703-48295722 None:intergenic 45.0%
AATCATATGCTCGAAAGCCG+AGG + chr2.1:48294889-48294908 MS.gene85629:intron 45.0%
AGCAGTGTTCCAACCATCAA+CGG + chr2.1:48293976-48293995 MS.gene85629:CDS 45.0%
ATAAACCAAGACAGGTCCTG+TGG - chr2.1:48298153-48298172 None:intergenic 45.0%
ATGGACTTGCACCTGTTACT+TGG + chr2.1:48294281-48294300 MS.gene85629:CDS 45.0%
ATGTTGGAGGGGAACAACTA+TGG + chr2.1:48294230-48294249 MS.gene85629:CDS 45.0%
CAAGGACTGAACTATATCCC+TGG + chr2.1:48297939-48297958 MS.gene85629:CDS 45.0%
CAGGGATATAGTTCAGTCCT+TGG - chr2.1:48297941-48297960 None:intergenic 45.0%
CATATAGCTGCAAGAGGACA+AGG + chr2.1:48294052-48294071 MS.gene85629:CDS 45.0%
CATGGAGTTCTTGGAGGATT+AGG + chr2.1:48296264-48296283 MS.gene85629:CDS 45.0%
CTCTACGCACCTTCTATGAA+AGG + chr2.1:48294849-48294868 MS.gene85629:intron 45.0%
GAGGATCCTAAGGTTGGATT+TGG + chr2.1:48294196-48294215 MS.gene85629:CDS 45.0%
GATGTTACATTAAGGGACGG+AGG + chr2.1:48295484-48295503 MS.gene85629:intron 45.0%
GGACCGTATGTTGAGTTACT+AGG - chr2.1:48297520-48297539 None:intergenic 45.0%
TATGGGATGTTCCTCATCCA+TGG + chr2.1:48298045-48298064 MS.gene85629:CDS 45.0%
TGGGTGGTTAGATATAGGGA+CGG - chr2.1:48295235-48295254 None:intergenic 45.0%
TGGTTAGATATAGGGACGGA+GGG - chr2.1:48295231-48295250 None:intergenic 45.0%
! CCATTGCTCGGTTTTACCTA+CGG - chr2.1:48293828-48293847 None:intergenic 45.0%
! GAGTTGTTAAGCCTTTTGGG+GGG - chr2.1:48296131-48296150 None:intergenic 45.0%
! GTGTACAATGACGGTGCTTT+TGG - chr2.1:48296506-48296525 None:intergenic 45.0%
!! TGTCGTTTACCGTTGATGGT+TGG - chr2.1:48293988-48294007 None:intergenic 45.0%
ACTACAGCACACAGGAAGAG+TGG + chr2.1:48298448-48298467 MS.gene85629:CDS 50.0%
ACTCTTCCTGTGTGCTGTAG+TGG - chr2.1:48298449-48298468 None:intergenic 50.0%
ATGGTTGGAACACTGCTGCT+GGG - chr2.1:48293973-48293992 None:intergenic 50.0%
CAACTACTACACCCCCCAAA+AGG + chr2.1:48296117-48296136 MS.gene85629:intron 50.0%
CATTACCACAGGACCTGTCT+TGG + chr2.1:48298145-48298164 MS.gene85629:CDS 50.0%
CCGTAGGTAAAACCGAGCAA+TGG + chr2.1:48293825-48293844 MS.gene85629:CDS 50.0%
CTCTTCCTGTGTGCTGTAGT+GGG - chr2.1:48298448-48298467 None:intergenic 50.0%
CTGCTGGGAATTCATGTACG+AGG - chr2.1:48293958-48293977 None:intergenic 50.0%
GTGGTTAGATATAGGGACGG+AGG - chr2.1:48295232-48295251 None:intergenic 50.0%
TCTTCCTGTGTGCTGTAGTG+GGG - chr2.1:48298447-48298466 None:intergenic 50.0%
TCTTGAGCCAGCACCAAAGA+GGG + chr2.1:48296320-48296339 MS.gene85629:CDS 50.0%
TTCCACACGAGGACAAGCTA+TGG + chr2.1:48294078-48294097 MS.gene85629:CDS 50.0%
CTCTTGAGCCAGCACCAAAG+AGG + chr2.1:48296319-48296338 MS.gene85629:CDS 55.0%
GATGGTTGGAACACTGCTGC+TGG - chr2.1:48293974-48293993 None:intergenic 55.0%
GGACAAGCTATGGCACGTGA+TGG + chr2.1:48294088-48294107 MS.gene85629:CDS 55.0%
GGACAAGGTCATTCCACACG+AGG + chr2.1:48294067-48294086 MS.gene85629:CDS 55.0%
GGAGGGACACTCTCTAATGC+TGG + chr2.1:48294328-48294347 MS.gene85629:CDS 55.0%
TCTTCCCCACTACAGCACAC+AGG + chr2.1:48298440-48298459 MS.gene85629:CDS 55.0%
! GTACGTACCCTCTTTGGTGC+TGG - chr2.1:48296330-48296349 None:intergenic 55.0%
! TGCCATAGCTTGTCCTCGTG+TGG - chr2.1:48294083-48294102 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 48293755 48298578 48293755 ID=MS.gene85629
chr2.1 mRNA 48293755 48298578 48293755 ID=MS.gene85629.t1;Parent=MS.gene85629
chr2.1 exon 48293755 48294418 48293755 ID=MS.gene85629.t1.exon1;Parent=MS.gene85629.t1
chr2.1 CDS 48293755 48294418 48293755 ID=cds.MS.gene85629.t1;Parent=MS.gene85629.t1
chr2.1 exon 48296214 48296341 48296214 ID=MS.gene85629.t1.exon2;Parent=MS.gene85629.t1
chr2.1 CDS 48296214 48296341 48296214 ID=cds.MS.gene85629.t1;Parent=MS.gene85629.t1
chr2.1 exon 48297326 48297598 48297326 ID=MS.gene85629.t1.exon3;Parent=MS.gene85629.t1
chr2.1 CDS 48297326 48297598 48297326 ID=cds.MS.gene85629.t1;Parent=MS.gene85629.t1
chr2.1 exon 48297921 48298189 48297921 ID=MS.gene85629.t1.exon4;Parent=MS.gene85629.t1
chr2.1 CDS 48297921 48298189 48297921 ID=cds.MS.gene85629.t1;Parent=MS.gene85629.t1
chr2.1 exon 48298275 48298578 48298275 ID=MS.gene85629.t1.exon5;Parent=MS.gene85629.t1
chr2.1 CDS 48298275 48298578 48298275 ID=cds.MS.gene85629.t1;Parent=MS.gene85629.t1
Gene Sequence

>MS.gene85629

ATGTCTCAAAATTACCCTTTTCCAATATACTTCATTCTCCTAATAATAACCATACCACGTTTAATATCAACCGTAGGTAAAACCGAGCAATGGAAATCATCACTACCAACAGAATTATTCACCACAAAAAATTCCAACATATCTCAAAAACTCATAAACGATCCAAAAGCCATTGAACTAGCTTCAAGTGATTATGGCAACCTCGTACATGAATTCCCAGCAGCAGTGTTCCAACCATCAACGGTAAACGACATAGTAAGTCTTGTAAAATTGTCGTATAATAGTTCTGTTCCTTTTCATATAGCTGCAAGAGGACAAGGTCATTCCACACGAGGACAAGCTATGGCACGTGATGGTGTTGTTGTTGACATGAAAGGGTTGAGAAGATTAAATAATAATAATAAAAATGTTAATGATGGTGTTGTTGGAATTAAGGTTTTTGAGGATCCTAAGGTTGGATTTGGATACTATGTTGATGTTGGAGGGGAACAACTATGGATTGATGTGTTGTATGAAACACTTGAGTATGGACTTGCACCTGTTACTTGGACTGATTATCTTTACTTGACTATTGGAGGGACACTCTCTAATGCTGGTATTAGTGGACAAACCTTTCGTTATGGTCCTCAAATTACTAGTGTTCATCAATTGGATGTTGTTACTGGTATGTATTATGCACATTTTCTTCTCCATCTAAATTCATTCTTTTATTTTTTTTTTCTTCTAATCAATGTTCAATTTTTATGTTGGTTTTCAACTTGGAATTCTATATACCTTTCTCGACTTTTTGGCTAAGATAAAGTGTAGTATATGTTCTTATCAGTTTATATGTGGTCAAATGGGTCACATGATATCAAATTACTTTTTTGAGGAGGAGAGGTCACTTCGATAGCTTGCTATTGGGCTTCTCATGTGTCGTCTATGTGTTGCACTATTGCATAGACTTCACGCATCCCACAAAAAAAAAATGGAATTCTCATTTTGATATTTGTAGTTTTTCTTGTTATAACCAAAAAAGTTTATTTATCGGAGTACAACGGGTACATGAACCCGTACAAGAAGAGCAATGTTAACTTAATTGCATAGTAAGAAAACTCTACGCACCTTCTATGAAAGGTTGCAGAACTTCCACTAAATCATATGCTCGAAAGCCGAGGAAAAAACAAAACACCAAAACTTTTACATAATGTTTCTTTCTTTGGTTTTGCATGAGTGTGTTTTCTCTTTCTCTAATTATTTGTTATTTTAAAAACTAAAGTTTGTTATGAAGTGTTTTGGGGACCAAAATTTATTTTTGGTCTAGTTATATGATCCGTATGATTTAGATAAACCATTTCAAATGGAGAAAAAAAACAATCTTCCATGTGCATTTTGGCTTTCCAATGCACAGTGACATATAAAGGAAAACCTTTCTAGCTTCTTTTTATAAAAAAAACATATGTTAGGCTTTAATCAAATAAGCTGTTTTATACTCCCTCCGTCCCTATATCTAACCACCCATTTGACTTTATTTTTGTCCCTAAATCTAAACCCTTTTTCAAATTACTAGATGCATTTATTATTATTTTCCTAAACATACCCCTAATTAATACTACTAACTTATCTTAAAATTTAAAAAGTCAAATTTAATACATATAGAAACAAAGGACAATATGGTAATATTAACACACAAAACAGACATAATAATTACACTGACAGCTTTTTTTAAGAAATATGAAAAAAGCAAAGGGATGTTACATTAAGGGACGGAGGGAGTATATGATAAAGATTTGGTTAGATTCTATTCCTCTACTTTTTAAATTTTTGTTGTAAATTTAACAATGTTGTTGTCTTGGGATTTTTTTTTCTTCCTATATAACTGTATTACACTATTTACTACTACCAATTTGTGGTTGTTAAGGGAGTCTTTATGTCTTAAGTTATAGGTGAAGTTAGCAAGTGATTTCCACAGGGTCCCTTTCTTGTTTTTGAAAAATTCTAAACTATAGAACCAGTTCACATTGTCGACATAGTCGTCTCCAATTCTTGATTAATATTTTCTTTTAATTTTGTTGACTATTGATTATACATATTATTGGTCCATGTCTATAATTTTAAGGTCAATTCCTTAACTATAATAATCTAAATTAAAATAATAGATACAATGTTGTATTTTACCCACAAGAGTTTGTTAAATAATATATGTATGCATGCAAGTATCTTTTTATCATATTATATTTTCATAAGAAAAAATTACTATACATTATACAATTTTATATATTAAATATTTTGTATATGCAAACTTTATAAATAAGAGTACAAGACCTTTATATATACTTGAACAAATAAGGAAGAGAGAGACTATTCAAAGAATCAGCTACAACAACTACTACACCCCCCAAAAGGCTTAACAACTCAACTAAAATAGAATTAAATGTTGTTTATACTTAATCAAGTTATAATTTTTGGTTATTTTTCAGGAAAAGGAGAATTTGTAACCTGTTCTAAAGAGAACAATTCGGAATTATTTCATGGAGTTCTTGGAGGATTAGGACAATTTGGAATTATAACAAGGGCAAGAATTGCTCTTGAGCCAGCACCAAAGAGGGTACGTACACTTTTGTCTTTAGGAAAAATTGACTACAATTTTTGTCTTGTAGCTAACTTCTTCTTCCAACCATTCATAATAATCCCAATTCTTAACGTTGTCACATTTGTTCAACCATATATCAAAATCAAGCTTTACAAGAGCATCTAATGTACTTTCGTCCAAAAGCACCGTCATTGTACACTATTGTTAGTGGTGCATTCTAGTCATCCAAGAATTATATATGAGAATTGTCGATTCCTAAGATTAAAAAAACATTTAAATAGTGTGTTTGAAAAAATAAATGTGGAAAGTCCTTTGACAATAATAATTGTAAGTGTTAGATAAGATTTACTGTCTAATGTTTGACCAATGCATGACATGTTTTTATTTCCACTATAGTCTTCTAACACATGAAGGGGATACTTAGAAATAGTGATTCAAATTGTGTGAAATCAAAATACTATGTATTGTAGCTACAATAGGCTTCTACAAATAATTTAGTCTTGTCTATTTAAAAAAAAATATATGTCATATCTTTATATCGGTTAGTTTGACTTATGTTCATCTTTATTTATAGTAGTCAGATATCTCAAATGTTGAATTAATGTTCAAAAACCTTACACCTTAAGTCACTATTATAAGCGAAAACTCAATTGTTGGGTTCATTGAATAACCGATGAATCTGGTTGATAATATTGATCAGATACATCAATCATTCAATGAACAAAAAAGTTAACTTTTGCTTATAATGATAACTAGAAGGTGTACATTTTAACTTTGTCAAAATAAATTTCAAGTATATATTTCGAAATTATTTGATCTTGATCCAATAGTTGAAATAAACTTAATGTAGTGATCACAAAGTATATTTTGACACTATTAAACATTTAATTTTCAAGCATTTAACTTTATCACTATAATAACATGGATTTTAAACATTGCATAAACAAGATGTACATTGCAATGTATATCAACTAATGGTGAATTTCATTTTATTGGCAGGTTAAATGGGTAAGACTTTTGTATAGTGATTTTTCTGTTTTTACCAAAGACCAAGAACGGTTAATCTCAATGAAAGGAAACAAAAATAGTGCATTGGATTATTTGGAAGGGATGGTATTAATGAATCAAGGACCCATAAATAATTGGAGATCTTCTTTCTTCCCTTTAACCGACCATCATAGAATACTTTCCCTAGTAACTCAACATACGGTCCTATATTGCTTGGAAATTGCCAAATATTATGATGATCATTCTGAAAACAATGTGAACAAGGTAAATTCTATTTTCATATGTTCAATTGTTACTACTCCTATTACCTACTATTTAATACCACTTTAATTTTACTCGTTGATGAACGTTTATAAGAATAATGTTAACGAGCGCTCTACCCTTTTCATAAACTAAACGGAAAAAATGAAAATAAAAGAAATTTGTTTTTAAATCGTTATGAAATTTAGGTTTTTTTTTTCTCTAATTTTCCGTCGCTAATTCAATATTTTTCTAGCATTACAATTATGAGTAAAAGATAGAAGATGTATATAATTACAAAATGCAATGAATATTAGCTAATTAATATTTGTTTATGTTTGTGTAGGAAATTCAAGTTTTGCTCCAAGGACTGAACTATATCCCTGGATTTCATTATGAAAAAAATGTGTCATTTGTTGAGTTCTTGAATAGAGTGAGAAGTGGAGAGTTGAAGCTTCAATCACAAGGACTATGGGATGTTCCTCATCCATGGCTTAATATGTTCATACCAAAATCTCGAATCTTAGATTTTAATTTCGGTGTCTTCAAGAAAATTATTCAAAAACGTAACATTACCACAGGACCTGTCTTGGTTTATCCCATGAATAGAAACAAGTAAGTCTTTAATTAACCTTGGTTCACATTATTTTTCTTGTATAAATAGTCATATATTAACATATACATCTCCTCTGTTTTTCAGATGGGACAATGAGATGTCAGCAACAATACCAGATGATGAGGATGATATCTTCTATGCTGTTGGATTTTTGCACTCAAGTGGGTTTGATAATTGGAAAGCATTTGATGCTCAAAACAAAGAAATTTTGCAATTTTGTAATCATGCTGGGATTAACTATAAGTTATATCTTCCCCACTACAGCACACAGGAAGAGTGGACAAACCATTTTGGTCCTAAAAAATGGAAAACTTTTTTACAAAGAAAATATGAGTTTGATCCAAGAATGATTCTATCACCTGGACAAAGAATCTTCAACAACAATTAA
Protein sequence

>MS.gene85629.t1

MSQNYPFPIYFILLIITIPRLISTVGKTEQWKSSLPTELFTTKNSNISQKLINDPKAIELASSDYGNLVHEFPAAVFQPSTVNDIVSLVKLSYNSSVPFHIAARGQGHSTRGQAMARDGVVVDMKGLRRLNNNNKNVNDGVVGIKVFEDPKVGFGYYVDVGGEQLWIDVLYETLEYGLAPVTWTDYLYLTIGGTLSNAGISGQTFRYGPQITSVHQLDVVTGKGEFVTCSKENNSELFHGVLGGLGQFGIITRARIALEPAPKRVKWVRLLYSDFSVFTKDQERLISMKGNKNSALDYLEGMVLMNQGPINNWRSSFFPLTDHHRILSLVTQHTVLYCLEIAKYYDDHSENNVNKEIQVLLQGLNYIPGFHYEKNVSFVEFLNRVRSGELKLQSQGLWDVPHPWLNMFIPKSRILDFNFGVFKKIIQKRNITTGPVLVYPMNRNKWDNEMSATIPDDEDDIFYAVGFLHSSGFDNWKAFDAQNKEILQFCNHAGINYKLYLPHYSTQEEWTNHFGPKKWKTFLQRKYEFDPRMILSPGQRIFNNN