AlfalfaGEDB | MS.gene85695

M. sativa cultivar XinJiangDaYe / MS.gene85695

KEGG: -
GO: GO:0003674 GO:0003676 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914 GO:0097159 GO:1901363
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85695.t1	XP_028762943.1	63.8	94	28	1	12	99	255	348	2.00E-26	128.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85695.t1	A0A392P9H0	64.4	90	31	1	2	91	107	195	4.7e-25	123.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene056854	MS.gene85695	0.813369	2.65E-51	-1.69E-46
MS.gene059272	MS.gene85695	0.834943	2.24E-56	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85695.t1	MTR_1g036690	58.537	82	27	3	19	99	5	80	2.63e-25	90.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 15 sgRNAs with CRISPR-Local

Find 18 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATGTTGTAAAGAATGATAT+TGG	0.471241	6.1:-17453446	MS.gene85695:CDS
ACTTCAAAATAAGGATAAAA+GGG	0.487291	6.1:-17453315	MS.gene85695:CDS
AGAAATCAGCAGCATCTAAG+TGG	0.464577	6.1:+17453234	None:intergenic
AGTATTTGCTATCGTTGTGG+AGG	0.599695	6.1:-17453401	MS.gene85695:CDS
CACTTCAAAATAAGGATAAA+AGG	0.234592	6.1:-17453316	MS.gene85695:CDS
CATTAGAGATGAAAATATCC+AGG	0.532865	6.1:-17453180	MS.gene85695:CDS
CCAACAATCACTTCAAAATA+AGG	0.244294	6.1:-17453324	MS.gene85695:CDS
GAAAATGATGAAGATGATTA+TGG	0.391347	6.1:-17453272	MS.gene85695:CDS
GAAATCAGCAGCATCTAAGT+GGG	0.621669	6.1:+17453235	None:intergenic
GAGAGTATTTGCTATCGTTG+TGG	0.583351	6.1:-17453404	MS.gene85695:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	CATTAGAGATGAAAATATCC+AGG	-	chr6.1:17453447-17453466	MS.gene85695:CDS	30.0%
	CCAACAATCACTTCAAAATA+AGG	-	chr6.1:17453303-17453322	MS.gene85695:CDS	30.0%
	AGAAATCAGCAGCATCTAAG+TGG	+	chr6.1:17453396-17453415	None:intergenic	40.0%
	GAAATCAGCAGCATCTAAGT+GGG	+	chr6.1:17453395-17453414	None:intergenic	40.0%
	GTTGTGGAGGAAAAGGTCAT+TGG	-	chr6.1:17453239-17453258	MS.gene85695:CDS	45.0%
	TGCTATCGTTGTGGAGGAAA+AGG	-	chr6.1:17453232-17453251	MS.gene85695:CDS	45.0%
!	CACTTCAAAATAAGGATAAA+AGG	-	chr6.1:17453311-17453330	MS.gene85695:CDS	25.0%
!	GAAAATGATGAAGATGATTA+TGG	-	chr6.1:17453355-17453374	MS.gene85695:CDS	25.0%
!	TGAAGATGATTATGGTAATA+TGG	-	chr6.1:17453363-17453382	MS.gene85695:CDS	25.0%
!	AGATGGTCAATCTTTTCATC+AGG	+	chr6.1:17453427-17453446	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.1	gene	17453175	17453474	17453175	ID=MS.gene85695
chr6.1	mRNA	17453175	17453474	17453175	ID=MS.gene85695.t1;Parent=MS.gene85695
chr6.1	exon	17453175	17453474	17453175	ID=MS.gene85695.t1.exon1;Parent=MS.gene85695.t1
chr6.1	CDS	17453175	17453474	17453175	ID=cds.MS.gene85695.t1;Parent=MS.gene85695.t1

Gene Sequence	>MS.gene85695 ATGAAAAATGTTGTAAAGAATGATATTGGTCAAAGCAGCAAAAGTAATGAGAGTATTTGCTATCGTTGTGGAGGAAAAGGTCATTGGAGTCGTACCTGTCGTACGCCAAAACATCTTGTTGATCTTTACCAACAATCACTTCAAAATAAGGATAAAAGGGCTGAAACGCACTTTGCATGCGAAAATGATGAAGATGATTATGGTAATATGGAAAGTACCCACTTAGATGCTGCTGATTTCTTTGTTGATCCTGATGAAAAGATTGACCATCTCATTAGAGATGAAAATATCCAGGAATAG
Protein sequence	>MS.gene85695.t1 MKNVVKNDIGQSSKSNESICYRCGGKGHWSRTCRTPKHLVDLYQQSLQNKDKRAETHFACENDEDDYGNMESTHLDAADFFVDPDEKIDHLIRDENIQE