AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene85887

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85887.t1 MTR_5g042920 93.103 435 27 3 1 434 1 433 0.0 827
MS.gene85887.t1 MTR_4g082580 54.767 451 111 11 13 433 1 388 1.21e-142 412
MS.gene85887.t1 MTR_7g011820 49.414 512 154 13 21 433 14 519 1.66e-141 414
MS.gene85887.t1 MTR_5g094430 47.478 337 149 9 109 430 21 344 1.43e-83 262
MS.gene85887.t1 MTR_5g094430 47.478 337 149 9 109 430 43 366 2.66e-83 262
MS.gene85887.t1 MTR_3g056100 53.785 251 107 3 145 395 91 332 5.78e-83 261
MS.gene85887.t1 MTR_5g094430 47.478 337 149 9 109 430 155 478 1.70e-82 264
MS.gene85887.t1 MTR_3g056100 53.785 251 107 3 145 395 235 476 5.63e-82 263
MS.gene85887.t1 MTR_7g100510 39.706 408 184 11 24 398 60 438 1.21e-81 258
MS.gene85887.t1 MTR_3g056100 53.077 260 108 4 145 395 91 345 2.48e-81 258
MS.gene85887.t1 MTR_3g056100 53.077 260 108 4 145 395 235 489 1.68e-80 260
MS.gene85887.t1 MTR_3g009470 43.158 380 142 10 113 419 230 608 4.32e-80 261
MS.gene85887.t1 MTR_7g071120 54.286 245 80 5 150 383 163 386 4.61e-78 251
MS.gene85887.t1 MTR_3g031220 52.191 251 114 3 142 389 187 434 1.86e-77 249
MS.gene85887.t1 MTR_5g074400 51.894 264 93 7 148 389 238 489 7.35e-75 244
MS.gene85887.t1 MTR_7g080020 48.239 284 100 5 150 387 277 559 3.86e-74 247
MS.gene85887.t1 MTR_4g013260 48.736 277 110 8 108 383 153 398 2.30e-71 233
MS.gene85887.t1 MTR_7g080000 48.485 264 106 5 150 383 231 494 3.79e-68 229
MS.gene85887.t1 MTR_3g031220 47.525 202 101 2 142 341 187 385 2.51e-51 177
MS.gene85887.t1 MTR_3g031220 52.000 75 31 2 312 382 185 258 1.02e-15 79.0
MS.gene85887.t1 MTR_3g009470 40.767 287 111 8 113 341 230 515 1.81e-50 178
MS.gene85887.t1 MTR_3g009470 58.333 60 24 1 321 380 280 338 2.99e-14 75.1
MS.gene85887.t1 MTR_5g097490 39.852 271 134 6 135 397 75 324 5.83e-50 174
MS.gene85887.t1 MTR_4g130900 39.357 249 139 6 144 383 176 421 1.97e-48 172
MS.gene85887.t1 MTR_4g130900 56.250 64 27 1 154 216 360 423 3.15e-16 80.9
MS.gene85887.t1 MTR_1g077780 52.597 154 58 2 264 416 4 143 1.47e-47 160
MS.gene85887.t1 MTR_1g077780 51.667 60 28 1 153 211 62 121 3.18e-14 70.1
MS.gene85887.t1 MTR_5g097500 30.712 267 164 4 121 387 51 296 6.42e-33 126
MS.gene85887.t1 MTR_1g086790 50.877 114 56 0 267 380 104 217 3.27e-32 125
MS.gene85887.t1 MTR_1g086790 58.065 62 23 2 153 213 158 217 9.76e-16 78.2
MS.gene85887.t1 MTR_4g094588 43.056 144 76 1 261 404 118 255 2.46e-31 122
MS.gene85887.t1 MTR_4g094588 60.000 60 23 1 153 211 178 237 3.24e-16 79.7
MS.gene85887.t1 MTR_7g109800 61.176 85 33 0 306 390 130 214 6.29e-30 118
MS.gene85887.t1 MTR_7g109800 61.290 62 21 2 153 213 145 204 1.75e-16 80.1
MS.gene85887.t1 MTR_2g033820 65.789 76 26 0 306 381 188 263 1.13e-28 116
MS.gene85887.t1 MTR_2g033820 60.000 60 23 1 153 211 203 262 1.91e-15 77.8
MS.gene85887.t1 MTR_8g007270 60.241 83 32 1 304 386 137 218 2.24e-28 112
MS.gene85887.t1 MTR_8g007270 63.158 57 20 1 153 208 154 210 2.00e-16 78.6
MS.gene85887.t1 MTR_3g095080 62.162 74 28 0 304 377 127 200 3.17e-28 111
MS.gene85887.t1 MTR_3g095080 50.000 78 33 3 153 228 144 217 9.25e-15 73.6
MS.gene85887.t1 MTR_3g095080 62.162 74 28 0 304 377 151 224 4.06e-28 111
MS.gene85887.t1 MTR_3g095080 50.000 78 33 3 153 228 168 241 7.67e-15 74.3
MS.gene85887.t1 MTR_5g091390 62.667 75 28 0 307 381 143 217 4.34e-28 113
MS.gene85887.t1 MTR_5g091390 58.333 60 24 1 153 211 157 216 6.42e-16 78.6
MS.gene85887.t1 MTR_5g043880 48.649 111 48 1 267 377 79 180 1.92e-26 108
MS.gene85887.t1 MTR_5g043880 58.621 58 23 1 153 209 124 181 9.14e-15 74.7
MS.gene85887.t1 MTR_8g092140 61.333 75 28 1 304 377 142 216 2.11e-26 106
MS.gene85887.t1 MTR_8g092140 46.739 92 42 4 138 226 144 231 3.59e-15 75.1
MS.gene85887.t1 MTR_7g079010 46.729 107 43 1 271 377 105 197 2.72e-26 106
MS.gene85887.t1 MTR_7g079010 48.810 84 38 2 140 222 128 207 1.72e-17 81.3
MS.gene85887.t1 MTR_7g028415 62.162 74 26 1 311 384 83 154 7.43e-26 103
MS.gene85887.t1 MTR_7g028415 56.140 57 24 1 153 208 93 149 2.09e-15 74.3
MS.gene85887.t1 MTR_7g028710 62.162 74 26 1 311 384 83 154 7.43e-26 103
MS.gene85887.t1 MTR_7g028710 56.140 57 24 1 153 208 93 149 2.09e-15 74.3
MS.gene85887.t1 MTR_8g096730 48.315 89 46 0 304 392 53 141 1.72e-25 101
MS.gene85887.t1 MTR_8g096730 44.304 79 42 2 153 230 70 147 3.71e-14 70.1
MS.gene85887.t1 MTR_3g104750 55.405 74 33 0 304 377 87 160 1.64e-24 99.8
MS.gene85887.t1 MTR_3g104750 50.877 57 27 1 153 208 104 160 1.15e-11 63.2
MS.gene85887.t1 MTR_8g092010 56.164 73 32 0 308 380 95 167 4.67e-24 99.0
MS.gene85887.t1 MTR_8g092010 53.333 60 27 1 153 211 108 167 7.55e-13 67.4
MS.gene85887.t1 MTR_3g095040 52.000 75 36 0 307 381 104 178 1.58e-23 98.2
MS.gene85887.t1 MTR_3g095040 53.333 60 27 1 153 211 118 177 7.37e-14 70.5
MS.gene85887.t1 MTR_6g086555 57.333 75 31 1 307 380 192 266 1.80e-23 102
MS.gene85887.t1 MTR_6g086555 40.816 98 52 4 122 217 179 272 2.03e-13 72.0
MS.gene85887.t1 MTR_4g122530 55.405 74 33 0 308 381 195 268 2.88e-23 101
MS.gene85887.t1 MTR_4g122530 61.667 60 22 1 153 211 208 267 3.60e-16 80.5
MS.gene85887.t1 MTR_3g053330 48.780 82 41 1 300 380 230 311 1.61e-22 99.8
MS.gene85887.t1 MTR_3g053330 35.294 136 79 4 95 223 190 323 4.71e-15 77.4
MS.gene85887.t1 MTR_1g015140 54.286 70 32 0 308 377 89 158 1.66e-22 94.0
MS.gene85887.t1 MTR_1g015140 54.386 57 25 1 153 208 102 158 7.10e-13 66.6
MS.gene85887.t1 MTR_1g078260 59.155 71 28 1 308 377 234 304 3.62e-22 99.0
MS.gene85887.t1 MTR_1g078260 45.455 77 39 3 153 227 247 322 1.13e-11 67.0
MS.gene85887.t1 MTR_7g110720 52.564 78 36 1 308 384 176 253 1.29e-21 96.7
MS.gene85887.t1 MTR_7g110720 51.667 60 27 2 154 211 190 249 2.53e-12 68.6
MS.gene85887.t1 MTR_4g132430 47.619 84 43 1 300 382 106 189 1.38e-21 95.9
MS.gene85887.t1 MTR_4g132430 49.180 61 29 2 153 211 127 187 3.28e-12 67.8
MS.gene85887.t1 MTR_7g110720 52.564 78 36 1 308 384 203 280 1.38e-21 96.7
MS.gene85887.t1 MTR_7g110720 51.667 60 27 2 154 211 217 276 2.56e-12 68.6
MS.gene85887.t1 MTR_2g023930 45.455 88 47 1 294 380 278 365 1.55e-21 97.4
MS.gene85887.t1 MTR_2g023930 51.667 60 27 2 154 211 306 365 1.86e-12 69.3
MS.gene85887.t1 MTR_4g049790 49.383 81 40 1 303 382 294 374 2.83e-21 96.7
MS.gene85887.t1 MTR_4g049790 36.458 96 59 2 154 247 313 408 2.35e-11 66.2
MS.gene85887.t1 MTR_2g088000 46.067 89 47 1 295 382 323 411 4.38e-21 96.3
MS.gene85887.t1 MTR_2g088000 49.180 61 29 2 153 211 349 409 1.49e-11 66.6
MS.gene85887.t1 MTR_4g094412 48.315 89 41 2 298 381 207 295 4.70e-21 95.5
MS.gene85887.t1 MTR_4g094412 39.216 102 55 4 117 211 193 294 1.39e-13 72.8
MS.gene85887.t1 MTR_4g107970 52.703 74 34 1 308 380 165 238 4.88e-21 95.9
MS.gene85887.t1 MTR_4g107970 50.746 67 30 3 148 211 172 238 1.30e-13 73.2
MS.gene85887.t1 MTR_4g094412 48.315 89 41 2 298 381 216 304 4.97e-21 95.5
MS.gene85887.t1 MTR_4g094412 39.216 102 55 4 117 211 202 303 1.41e-13 72.8
MS.gene85887.t1 MTR_4g132430 47.619 84 43 1 300 382 240 323 5.27e-21 95.5
MS.gene85887.t1 MTR_4g132430 49.180 61 29 2 153 211 261 321 6.74e-12 67.8
MS.gene85887.t1 MTR_4g107970 52.703 74 34 1 308 380 242 315 5.98e-21 95.9
MS.gene85887.t1 MTR_4g107970 50.746 67 30 3 148 211 249 315 1.56e-13 72.8
MS.gene85887.t1 MTR_7g009730 39.496 119 70 2 260 377 159 276 1.09e-20 95.1
MS.gene85887.t1 MTR_7g009730 52.459 61 25 3 153 210 219 278 7.01e-12 67.8
MS.gene85887.t1 MTR_1g009613 55.556 81 32 2 303 382 247 324 1.41e-20 92.8
MS.gene85887.t1 MTR_1g009613 50.725 69 31 3 144 210 254 321 8.75e-13 69.7
MS.gene85887.t1 MTR_7g062220 62.712 59 22 0 319 377 122 180 3.03e-20 91.3
MS.gene85887.t1 MTR_7g062220 45.455 99 48 3 115 208 83 180 1.21e-14 75.1
MS.gene85887.t1 MTR_5g074200 59.375 64 26 0 153 216 220 283 5.38e-20 90.9
MS.gene85887.t1 MTR_5g074200 53.226 62 28 1 321 382 220 280 8.49e-15 75.5
MS.gene85887.t1 MTR_2g105060 56.250 64 27 1 319 381 92 155 5.41e-20 89.0
MS.gene85887.t1 MTR_2g105060 51.667 60 27 2 154 211 95 154 1.33e-12 67.8
MS.gene85887.t1 MTR_2g045360 46.237 93 46 2 308 399 198 287 7.71e-20 91.7
MS.gene85887.t1 MTR_2g045360 51.667 60 27 2 154 211 212 271 8.34e-13 70.1
MS.gene85887.t1 MTR_2g105060 56.250 64 27 1 319 381 167 230 9.00e-20 90.1
MS.gene85887.t1 MTR_2g105060 51.667 60 27 2 154 211 170 229 1.93e-12 68.2
MS.gene85887.t1 MTR_4g049760 42.593 108 54 3 279 381 247 351 1.27e-19 91.7
MS.gene85887.t1 MTR_3g106060 36.054 147 62 6 255 377 57 195 2.04e-19 88.6
MS.gene85887.t1 MTR_3g106060 45.333 75 39 2 136 208 121 195 7.35e-14 72.4
MS.gene85887.t1 MTR_5g016610 50.685 73 35 1 318 389 196 268 8.12e-19 86.3
MS.gene85887.t1 MTR_5g016610 46.575 73 37 2 140 210 186 258 4.13e-13 69.7
MS.gene85887.t1 MTR_4g127040 45.745 94 39 3 285 377 220 302 2.99e-18 85.5
MS.gene85887.t1 MTR_4g127040 47.761 67 32 3 144 208 237 302 8.72e-12 66.2
MS.gene85887.t1 MTR_4g094908 56.061 66 28 1 318 382 263 328 3.28e-18 85.9
MS.gene85887.t1 MTR_4g094908 54.688 64 26 3 149 210 263 325 4.48e-14 73.6
MS.gene85887.t1 MTR_1g013760 49.315 73 34 2 308 377 125 197 3.60e-18 84.7
MS.gene85887.t1 MTR_1g013760 52.632 57 25 2 154 208 141 197 2.30e-13 70.5
MS.gene85887.t1 MTR_2g016770 36.800 125 66 5 151 270 33 149 5.22e-18 82.8
MS.gene85887.t1 MTR_2g016770 43.478 92 50 2 322 412 36 126 1.34e-17 81.6
MS.gene85887.t1 MTR_2g016770 36.800 125 66 5 151 270 25 141 5.95e-18 82.4
MS.gene85887.t1 MTR_2g016770 43.478 92 50 2 322 412 28 118 1.63e-17 81.3
MS.gene85887.t1 MTR_4g007060 53.968 63 28 1 319 380 126 188 1.38e-17 83.2
MS.gene85887.t1 MTR_4g007060 53.333 60 26 2 154 211 129 188 7.91e-14 72.0
MS.gene85887.t1 MTR_8g087000 51.515 66 31 1 322 386 78 143 1.57e-17 82.0
MS.gene85887.t1 MTR_8g087000 49.206 63 30 2 151 211 75 137 4.25e-13 69.3
MS.gene85887.t1 MTR_8g087000 51.515 66 31 1 322 386 77 142 1.63e-17 82.0
MS.gene85887.t1 MTR_8g087000 49.206 63 30 2 151 211 74 136 4.60e-13 68.9
MS.gene85887.t1 MTR_4g007060 53.968 63 28 1 319 380 160 222 2.00e-17 83.2
MS.gene85887.t1 MTR_4g007060 53.333 60 26 2 154 211 163 222 1.14e-13 72.0
MS.gene85887.t1 MTR_7g109600 50.000 70 34 1 322 390 54 123 3.04e-17 81.6
MS.gene85887.t1 MTR_7g109600 47.826 69 32 3 154 220 54 120 2.45e-11 64.3
MS.gene85887.t1 MTR_4g047580 38.889 90 54 1 294 382 254 343 8.68e-17 82.8
MS.gene85887.t1 MTR_2g024350 52.113 71 33 1 316 385 3 73 1.39e-16 79.0
MS.gene85887.t1 MTR_2g024350 52.174 69 31 2 149 215 4 72 1.90e-14 72.8
MS.gene85887.t1 MTR_7g079040 44.000 100 53 3 285 383 120 217 1.57e-16 80.5
MS.gene85887.t1 MTR_1g070455 52.113 71 32 2 318 386 290 360 1.59e-16 80.9
MS.gene85887.t1 MTR_1g070455 54.839 62 25 3 149 208 290 350 2.44e-12 68.6
MS.gene85887.t1 MTR_2g032030 46.341 82 40 2 322 402 268 346 3.21e-16 80.5
MS.gene85887.t1 MTR_2g032030 48.333 60 29 2 154 211 268 327 1.00e-10 63.9
MS.gene85887.t1 MTR_6g046600 61.818 55 21 0 163 217 12 66 3.21e-16 75.1
MS.gene85887.t1 MTR_2g032030 46.341 82 40 2 322 402 268 346 3.43e-16 80.9
MS.gene85887.t1 MTR_1g013790 45.714 70 37 1 312 380 92 161 7.26e-16 77.4
MS.gene85887.t1 MTR_1g013790 34.483 116 69 3 154 262 102 217 8.31e-14 71.6
MS.gene85887.t1 MTR_2g083870 49.231 65 32 1 322 385 81 145 7.44e-16 77.8
MS.gene85887.t1 MTR_2g083870 48.485 66 32 2 151 214 78 143 2.20e-13 70.5
MS.gene85887.t1 MTR_8g028565 32.836 134 84 4 276 408 112 240 9.71e-16 78.6
MS.gene85887.t1 MTR_1g099600 45.946 74 38 2 308 380 173 245 1.49e-15 77.4
MS.gene85887.t1 MTR_1g099600 42.647 68 37 2 146 211 178 245 1.48e-11 65.5
MS.gene85887.t1 MTR_8g098945 51.613 62 29 1 320 380 128 189 1.54e-15 77.0
MS.gene85887.t1 MTR_8g098945 45.833 72 35 3 148 217 124 193 3.34e-12 67.0
MS.gene85887.t1 MTR_2g024380 49.351 77 38 1 310 385 240 316 1.65e-15 78.6
MS.gene85887.t1 MTR_2g024380 52.174 69 31 2 149 215 247 315 1.38e-13 72.8
MS.gene85887.t1 MTR_3g108960 43.243 74 41 1 306 378 299 372 1.67e-14 75.1
MS.gene85887.t1 MTR_3g108960 47.761 67 32 3 144 208 306 371 2.71e-11 65.5
MS.gene85887.t1 MTR_0117s0040 42.045 88 44 3 318 404 71 152 1.89e-14 73.2
MS.gene85887.t1 MTR_0117s0040 48.529 68 32 3 144 209 66 132 1.28e-11 64.7
MS.gene85887.t1 MTR_8g067650 33.846 130 68 3 275 386 276 405 2.17e-14 75.5
MS.gene85887.t1 MTR_8g067650 45.679 81 42 2 139 217 325 405 1.60e-13 72.8
MS.gene85887.t1 MTR_8g067635 33.846 130 68 3 275 386 286 415 4.70e-14 74.3
MS.gene85887.t1 MTR_8g067635 49.296 71 34 2 149 217 345 415 1.44e-12 69.7
MS.gene85887.t1 MTR_8g069935 48.649 74 36 2 149 220 327 400 5.83e-14 73.9
MS.gene85887.t1 MTR_8g069935 44.776 67 36 1 321 386 331 397 1.92e-13 72.4
MS.gene85887.t1 MTR_2g075750 30.872 149 94 5 294 434 1 148 7.25e-14 70.1
MS.gene85887.t1 MTR_5g067680 47.059 68 32 2 143 206 192 259 1.93e-13 71.6
MS.gene85887.t1 MTR_5g067680 46.552 58 28 1 321 375 202 259 8.60e-11 63.5
MS.gene85887.t1 MTR_2g075610 36.792 106 49 3 319 411 27 127 7.26e-13 67.4
MS.gene85887.t1 MTR_5g044695 46.000 50 27 0 298 347 54 103 1.16e-12 64.7
MS.gene85887.t1 MTR_6g053200 41.176 68 39 1 319 385 328 395 1.88e-12 69.3
MS.gene85887.t1 MTR_3g090860 46.479 71 33 3 140 206 121 190 2.10e-12 68.6
MS.gene85887.t1 MTR_3g090860 39.560 91 49 3 320 407 132 219 6.92e-12 67.0
MS.gene85887.t1 MTR_8g099350 51.724 58 25 1 321 375 132 189 4.71e-12 67.4
MS.gene85887.t1 MTR_8g099350 49.206 63 28 2 148 206 127 189 1.81e-11 65.9
MS.gene85887.t1 MTR_1g077760 58.140 43 18 0 299 341 92 134 6.93e-12 63.2
MS.gene85887.t1 MTR_2g075680 48.333 60 28 1 319 375 146 205 3.69e-11 64.3
MS.gene85887.t1 MTR_6g038890 42.593 54 31 0 295 348 162 215 4.02e-11 62.8
MS.gene85887.t1 MTR_8g027860 43.836 73 32 3 152 215 135 207 6.10e-11 63.9
MS.gene85887.t1 MTR_7g117200 45.714 70 32 3 153 216 118 187 7.45e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85887.t1 AT1G13960 51.141 526 144 18 8 434 3 514 6.88e-140 410
MS.gene85887.t1 AT2G03340 53.676 408 122 9 71 434 129 513 3.39e-130 385
MS.gene85887.t1 AT2G03340 65.957 47 12 2 24 66 20 66 7.54e-11 64.3
MS.gene85887.t1 AT1G13960 58.133 375 107 13 96 434 1 361 2.13e-120 355
MS.gene85887.t1 AT3G01080 43.515 478 170 17 22 434 18 460 8.45e-94 290
MS.gene85887.t1 AT3G01080 44.568 451 166 16 22 434 18 422 1.42e-93 288
MS.gene85887.t1 AT5G56270 48.667 300 108 4 130 383 250 549 7.30e-80 260
MS.gene85887.t1 AT2G38470 53.759 266 93 7 150 396 181 435 4.59e-79 254
MS.gene85887.t1 AT4G26640 52.846 246 96 4 152 386 34 270 5.71e-77 244
MS.gene85887.t1 AT4G26640 48.718 78 39 1 135 211 187 264 2.48e-15 77.8
MS.gene85887.t1 AT4G26640 52.846 246 96 4 152 386 34 270 5.71e-77 244
MS.gene85887.t1 AT4G26640 48.718 78 39 1 135 211 187 264 2.48e-15 77.8
MS.gene85887.t1 AT4G26640 52.846 246 96 4 152 386 34 270 5.71e-77 244
MS.gene85887.t1 AT4G26640 48.718 78 39 1 135 211 187 264 2.48e-15 77.8
MS.gene85887.t1 AT4G26640 52.846 246 96 4 152 386 34 270 5.71e-77 244
MS.gene85887.t1 AT4G26640 48.718 78 39 1 135 211 187 264 2.48e-15 77.8
MS.gene85887.t1 AT4G26640 54.167 240 102 3 152 386 138 374 3.21e-76 246
MS.gene85887.t1 AT4G26640 48.718 78 39 1 135 211 291 368 3.65e-15 77.8
MS.gene85887.t1 AT4G26640 54.167 240 102 3 152 386 170 406 5.44e-76 246
MS.gene85887.t1 AT4G26640 48.718 78 39 1 135 211 323 400 3.75e-15 77.8
MS.gene85887.t1 AT4G26640 52.846 246 96 4 152 386 210 446 9.39e-76 246
MS.gene85887.t1 AT4G26640 48.718 78 39 1 135 211 363 440 3.48e-15 78.2
MS.gene85887.t1 AT4G26440 48.214 280 113 6 145 395 170 446 2.38e-75 246
MS.gene85887.t1 AT5G07100 48.536 239 70 3 146 383 17 203 2.36e-70 222
MS.gene85887.t1 AT5G07100 56.250 64 27 1 153 215 141 204 1.62e-16 78.6
MS.gene85887.t1 AT5G07100 48.571 70 36 0 321 390 24 93 5.54e-15 74.3
MS.gene85887.t1 AT5G07100 48.536 239 70 3 146 383 17 203 2.36e-70 222
MS.gene85887.t1 AT5G07100 56.250 64 27 1 153 215 141 204 1.62e-16 78.6
MS.gene85887.t1 AT5G07100 48.571 70 36 0 321 390 24 93 5.54e-15 74.3
MS.gene85887.t1 AT5G07100 48.536 239 70 3 146 383 17 203 2.36e-70 222
MS.gene85887.t1 AT5G07100 56.250 64 27 1 153 215 141 204 1.62e-16 78.6
MS.gene85887.t1 AT5G07100 48.571 70 36 0 321 390 24 93 5.54e-15 74.3
MS.gene85887.t1 AT5G07100 48.536 239 70 3 146 383 17 203 2.36e-70 222
MS.gene85887.t1 AT5G07100 56.250 64 27 1 153 215 141 204 1.62e-16 78.6
MS.gene85887.t1 AT5G07100 48.571 70 36 0 321 390 24 93 5.54e-15 74.3
MS.gene85887.t1 AT5G07100 49.372 239 68 4 146 383 110 296 1.30e-69 223
MS.gene85887.t1 AT5G07100 56.250 64 27 1 153 215 234 297 3.68e-16 79.3
MS.gene85887.t1 AT5G07100 40.000 95 46 1 307 390 92 186 2.06e-15 77.0
MS.gene85887.t1 AT2G37260 44.406 286 106 8 149 400 81 347 2.24e-64 211
MS.gene85887.t1 AT2G37260 44.406 286 106 8 149 400 79 345 2.28e-64 211
MS.gene85887.t1 AT2G37260 44.406 286 106 8 149 400 161 427 1.10e-63 211
MS.gene85887.t1 AT2G30250 45.200 250 123 4 137 382 150 389 1.52e-60 202
MS.gene85887.t1 AT2G04880 43.580 257 113 8 149 387 107 349 2.53e-59 201
MS.gene85887.t1 AT2G04880 45.455 99 49 2 152 247 282 378 5.08e-20 92.4
MS.gene85887.t1 AT2G04880 41.176 272 122 7 149 387 107 373 2.12e-58 199
MS.gene85887.t1 AT2G04880 45.455 99 49 2 152 247 306 402 5.24e-20 92.4
MS.gene85887.t1 AT4G12020 53.731 201 88 4 146 341 461 661 3.19e-55 198
MS.gene85887.t1 AT4G12020 49.180 61 30 1 320 380 467 526 9.30e-12 67.8
MS.gene85887.t1 AT4G12020 53.731 201 88 4 146 341 461 661 3.19e-55 198
MS.gene85887.t1 AT4G12020 49.180 61 30 1 320 380 467 526 9.30e-12 67.8
MS.gene85887.t1 AT4G12020 53.731 201 88 4 146 341 461 661 3.46e-55 198
MS.gene85887.t1 AT4G12020 49.180 61 30 1 320 380 467 526 9.30e-12 68.2
MS.gene85887.t1 AT4G12020 53.731 201 88 4 146 341 461 661 4.34e-55 197
MS.gene85887.t1 AT4G12020 49.180 61 30 1 320 380 467 526 1.04e-11 67.8
MS.gene85887.t1 AT4G12020 53.731 201 88 4 146 341 461 661 4.36e-55 197
MS.gene85887.t1 AT4G12020 49.180 61 30 1 320 380 467 526 1.04e-11 67.8
MS.gene85887.t1 AT4G12020 53.731 201 88 4 146 341 461 661 4.55e-55 197
MS.gene85887.t1 AT4G12020 49.180 61 30 1 320 380 467 526 1.04e-11 67.8
MS.gene85887.t1 AT4G12020 53.731 201 88 4 146 341 461 661 4.55e-55 197
MS.gene85887.t1 AT4G12020 49.180 61 30 1 320 380 467 526 1.04e-11 67.8
MS.gene85887.t1 AT4G12020 53.731 201 88 4 146 341 461 661 4.59e-55 197
MS.gene85887.t1 AT4G12020 49.180 61 30 1 320 380 467 526 1.31e-11 67.4
MS.gene85887.t1 AT4G12020 53.731 201 88 4 146 341 461 661 4.73e-55 197
MS.gene85887.t1 AT4G12020 49.180 61 30 1 320 380 467 526 1.07e-11 67.8
MS.gene85887.t1 AT4G12020 53.731 201 88 4 146 341 461 661 4.74e-55 197
MS.gene85887.t1 AT4G12020 49.180 61 30 1 320 380 467 526 1.05e-11 67.8
MS.gene85887.t1 AT4G12020 53.731 201 88 4 146 341 394 594 5.52e-55 197
MS.gene85887.t1 AT4G12020 49.180 61 30 1 320 380 400 459 1.13e-11 67.8
MS.gene85887.t1 AT4G30935 42.017 238 123 6 151 383 166 393 1.38e-48 172
MS.gene85887.t1 AT4G30935 56.250 64 27 1 154 216 332 395 2.07e-17 84.7
MS.gene85887.t1 AT3G01080 39.007 282 103 13 22 239 18 294 1.27e-37 139
MS.gene85887.t1 AT3G01080 58.333 60 24 1 321 380 205 263 1.57e-15 77.8
MS.gene85887.t1 AT4G18170 68.000 75 24 0 306 380 157 231 1.09e-30 120
MS.gene85887.t1 AT4G18170 58.333 60 24 1 153 211 172 231 5.24e-16 79.0
MS.gene85887.t1 AT1G29860 65.789 76 26 0 306 381 121 196 1.95e-30 119
MS.gene85887.t1 AT1G29860 58.333 60 24 1 153 211 136 195 6.10e-16 78.2
MS.gene85887.t1 AT5G46350 62.338 77 29 0 307 383 169 245 7.37e-29 115
MS.gene85887.t1 AT5G46350 54.545 66 28 2 153 217 183 247 4.08e-15 76.6
MS.gene85887.t1 AT2G44745 59.036 83 33 1 304 386 128 209 1.57e-28 112
MS.gene85887.t1 AT2G44745 57.971 69 25 3 153 219 145 211 1.31e-16 79.0
MS.gene85887.t1 AT2G47260 64.000 75 27 0 306 380 159 233 1.95e-28 115
MS.gene85887.t1 AT2G47260 58.333 60 24 1 153 211 174 233 2.41e-15 77.4
MS.gene85887.t1 AT4G39410 64.865 74 26 0 304 377 206 279 2.75e-28 114
MS.gene85887.t1 AT4G39410 49.333 75 35 2 136 208 206 279 2.55e-13 70.9
MS.gene85887.t1 AT5G13080 54.878 82 37 0 308 389 54 135 2.28e-27 106
MS.gene85887.t1 AT5G13080 54.386 57 25 1 153 208 67 123 2.78e-15 73.2
MS.gene85887.t1 AT1G69310 47.826 115 53 1 263 377 96 203 3.05e-27 110
MS.gene85887.t1 AT1G69310 60.345 58 22 1 153 209 147 204 7.93e-16 78.2
MS.gene85887.t1 AT1G69310 47.826 115 53 1 263 377 96 203 3.05e-27 110
MS.gene85887.t1 AT1G69310 60.345 58 22 1 153 209 147 204 7.93e-16 78.2
MS.gene85887.t1 AT1G69310 47.826 115 53 1 263 377 96 203 3.05e-27 110
MS.gene85887.t1 AT1G69310 60.345 58 22 1 153 209 147 204 7.93e-16 78.2
MS.gene85887.t1 AT1G64000 38.650 163 91 3 220 377 12 170 6.83e-27 107
MS.gene85887.t1 AT1G64000 49.333 75 35 2 136 208 97 170 1.24e-15 75.5
MS.gene85887.t1 AT5G49520 62.667 75 28 0 306 380 206 280 8.43e-27 111
MS.gene85887.t1 AT5G49520 58.333 60 24 1 153 211 221 280 3.44e-15 77.4
MS.gene85887.t1 AT5G41570 63.380 71 26 0 307 377 84 154 1.07e-26 106
MS.gene85887.t1 AT5G41570 54.839 62 25 2 149 208 94 154 5.05e-14 70.5
MS.gene85887.t1 AT3G01970 57.317 82 35 0 308 389 52 133 1.57e-26 104
MS.gene85887.t1 AT3G01970 52.381 63 29 1 153 214 65 127 2.38e-15 73.6
MS.gene85887.t1 AT1G55600 57.303 89 38 0 294 382 280 368 2.74e-25 108
MS.gene85887.t1 AT1G55600 57.377 61 23 2 153 211 307 366 1.58e-13 72.8
MS.gene85887.t1 AT5G26170 58.571 70 29 0 308 377 100 169 3.40e-25 101
MS.gene85887.t1 AT5G26170 52.459 61 28 1 153 212 113 173 2.91e-14 71.2
MS.gene85887.t1 AT2G46130 60.563 71 28 0 307 377 16 86 4.20e-25 99.4
MS.gene85887.t1 AT2G46130 59.649 57 22 1 153 208 30 86 1.26e-15 73.2
MS.gene85887.t1 AT3G62340 62.162 74 28 0 307 380 104 177 4.58e-25 104
MS.gene85887.t1 AT3G62340 58.333 60 24 1 153 211 118 177 7.13e-15 75.1
MS.gene85887.t1 AT4G04450 45.370 108 58 1 300 406 177 284 2.92e-24 104
MS.gene85887.t1 AT4G04450 51.667 60 27 2 154 211 199 258 8.20e-13 70.5
MS.gene85887.t1 AT4G04450 45.370 108 58 1 300 406 271 378 9.10e-24 103
MS.gene85887.t1 AT2G21900 50.000 76 35 1 310 382 95 170 5.52e-23 96.7
MS.gene85887.t1 AT2G21900 41.053 95 55 1 144 237 100 194 8.87e-15 73.2
MS.gene85887.t1 AT1G69310 45.217 115 52 2 263 377 96 199 2.35e-22 96.7
MS.gene85887.t1 AT1G69310 55.172 58 21 2 153 209 147 200 3.08e-11 64.3
MS.gene85887.t1 AT5G64810 52.113 71 34 0 308 378 97 167 5.39e-22 93.6
MS.gene85887.t1 AT5G64810 50.000 60 25 2 153 209 110 167 1.31e-11 63.9
MS.gene85887.t1 AT1G62300 49.398 83 41 1 299 380 290 372 8.39e-22 98.2
MS.gene85887.t1 AT1G62300 39.394 99 54 4 119 211 274 372 4.56e-13 71.6
MS.gene85887.t1 AT4G22070 46.591 88 46 1 294 380 270 357 1.06e-21 97.8
MS.gene85887.t1 AT4G22070 51.667 60 27 2 154 211 298 357 1.37e-12 70.1
MS.gene85887.t1 AT4G22070 46.591 88 46 1 294 380 270 357 1.06e-21 97.8
MS.gene85887.t1 AT4G22070 51.667 60 27 2 154 211 298 357 1.37e-12 70.1
MS.gene85887.t1 AT4G22070 46.591 88 46 1 294 380 270 357 1.06e-21 97.8
MS.gene85887.t1 AT4G22070 51.667 60 27 2 154 211 298 357 1.37e-12 70.1
MS.gene85887.t1 AT4G22070 46.591 88 46 1 294 380 270 357 1.06e-21 97.8
MS.gene85887.t1 AT4G22070 51.667 60 27 2 154 211 298 357 1.37e-12 70.1
MS.gene85887.t1 AT5G15130 47.561 82 42 1 304 384 168 249 8.96e-21 95.1
MS.gene85887.t1 AT5G15130 51.613 62 26 3 153 211 185 245 1.25e-12 70.1
MS.gene85887.t1 AT5G15130 47.561 82 42 1 304 384 210 291 9.17e-21 95.1
MS.gene85887.t1 AT5G15130 51.613 62 26 3 153 211 227 287 1.29e-12 70.1
MS.gene85887.t1 AT1G68150 51.282 78 37 1 308 384 222 299 2.02e-20 92.8
MS.gene85887.t1 AT1G68150 36.752 117 65 4 98 211 185 295 3.33e-14 74.3
MS.gene85887.t1 AT2G46130 56.338 71 27 1 307 377 16 82 2.14e-20 86.3
MS.gene85887.t1 AT2G46130 54.386 57 21 2 153 208 30 82 4.89e-11 60.1
MS.gene85887.t1 AT1G18860 51.282 78 37 1 304 380 222 299 3.16e-20 93.6
MS.gene85887.t1 AT2G25000 42.222 90 51 1 294 382 76 165 3.90e-20 89.4
MS.gene85887.t1 AT2G25000 33.333 120 66 5 154 262 104 220 3.03e-11 63.5
MS.gene85887.t1 AT2G25000 42.222 90 51 1 294 382 76 165 3.90e-20 89.4
MS.gene85887.t1 AT2G25000 33.333 120 66 5 154 262 104 220 3.03e-11 63.5
MS.gene85887.t1 AT2G25000 42.222 90 51 1 294 382 98 187 6.65e-20 89.0
MS.gene85887.t1 AT2G25000 33.333 120 66 5 154 262 126 242 5.75e-11 63.2
MS.gene85887.t1 AT2G25000 42.222 90 51 1 294 382 119 208 9.91e-20 89.0
MS.gene85887.t1 AT2G25000 33.333 120 66 5 154 262 147 263 6.59e-11 63.2
MS.gene85887.t1 AT5G43290 44.792 96 41 1 294 377 75 170 7.30e-19 86.7
MS.gene85887.t1 AT5G43290 53.846 78 25 3 152 218 113 190 2.32e-15 76.6
MS.gene85887.t1 AT4G31550 51.190 84 37 2 303 385 231 311 7.81e-19 87.4
MS.gene85887.t1 AT4G31550 54.839 62 25 3 149 208 243 303 2.13e-12 68.2
MS.gene85887.t1 AT4G31800 52.113 71 32 2 314 382 103 173 8.02e-19 85.9
MS.gene85887.t1 AT4G31800 49.180 61 29 2 154 212 112 172 9.45e-13 68.2
MS.gene85887.t1 AT1G80840 53.125 64 29 1 319 381 144 207 8.23e-19 87.0
MS.gene85887.t1 AT1G80840 50.820 61 28 2 154 212 147 207 1.65e-13 71.2
MS.gene85887.t1 AT4G23550 40.206 97 57 1 288 383 107 203 8.26e-19 87.0
MS.gene85887.t1 AT4G23550 35.032 157 86 6 69 211 46 200 1.28e-11 65.9
MS.gene85887.t1 AT4G31550 51.190 84 37 2 303 385 230 310 8.33e-19 87.4
MS.gene85887.t1 AT4G31550 54.839 62 25 3 149 208 242 302 2.29e-12 68.2
MS.gene85887.t1 AT4G31800 52.113 71 32 2 314 382 168 238 1.49e-18 86.3
MS.gene85887.t1 AT4G31800 49.180 61 29 2 154 212 177 237 1.43e-12 68.6
MS.gene85887.t1 AT4G01720 50.000 74 36 1 308 380 226 299 2.97e-18 87.4
MS.gene85887.t1 AT4G01720 41.463 82 46 2 132 211 218 299 3.84e-12 68.6
MS.gene85887.t1 AT2G23320 57.143 63 26 1 318 379 237 299 1.05e-17 84.0
MS.gene85887.t1 AT2G23320 53.125 64 27 3 149 210 237 299 8.35e-13 69.3
MS.gene85887.t1 AT2G30590 58.065 62 25 1 317 377 309 370 1.07e-17 84.7
MS.gene85887.t1 AT2G30590 52.941 68 28 4 148 212 309 375 3.71e-13 71.2
MS.gene85887.t1 AT4G24240 54.688 64 28 1 317 379 277 340 5.80e-17 82.4
MS.gene85887.t1 AT4G24240 50.725 69 31 3 144 210 273 340 9.42e-14 72.8
MS.gene85887.t1 AT2G24570 59.016 61 24 1 318 377 240 300 1.04e-16 81.3
MS.gene85887.t1 AT2G24570 53.968 63 26 3 149 209 240 301 1.28e-12 68.9
MS.gene85887.t1 AT4G01250 55.556 63 27 1 319 380 126 188 1.05e-16 80.9
MS.gene85887.t1 AT4G01250 33.333 126 75 4 154 277 129 247 1.54e-11 65.5
MS.gene85887.t1 AT5G28650 50.000 72 35 1 318 388 259 330 1.22e-16 81.3
MS.gene85887.t1 AT5G28650 53.226 62 26 3 149 208 259 319 1.28e-11 65.9
MS.gene85887.t1 AT3G04670 50.000 72 35 1 318 388 259 330 1.97e-16 80.5
MS.gene85887.t1 AT3G04670 51.613 62 27 3 149 208 259 319 1.12e-11 66.2
MS.gene85887.t1 AT5G52830 45.556 90 46 3 308 396 153 240 3.04e-16 80.1
MS.gene85887.t1 AT5G52830 48.485 66 30 3 154 217 166 229 3.45e-11 64.7
MS.gene85887.t1 AT1G30650 39.604 101 42 2 322 403 218 318 3.13e-16 80.9
MS.gene85887.t1 AT1G30650 50.000 60 28 2 154 211 218 277 3.51e-11 65.1
MS.gene85887.t1 AT1G29280 53.333 60 27 1 322 380 75 134 6.19e-16 77.8
MS.gene85887.t1 AT1G29280 49.206 63 30 2 151 211 72 134 1.55e-12 67.8
MS.gene85887.t1 AT3G58710 33.898 118 68 2 281 388 21 138 6.40e-16 78.2
MS.gene85887.t1 AT3G58710 44.286 70 37 2 151 218 68 137 6.32e-12 66.2
MS.gene85887.t1 AT3G58710 47.059 68 35 1 322 388 72 139 7.13e-16 77.8
MS.gene85887.t1 AT3G58710 44.286 70 37 2 151 218 69 138 6.27e-12 66.2
MS.gene85887.t1 AT2G34830 50.794 63 30 1 322 383 225 287 7.40e-16 79.7
MS.gene85887.t1 AT2G34830 48.333 60 29 2 154 211 225 284 8.17e-11 63.9
MS.gene85887.t1 AT2G34830 50.794 63 30 1 322 383 216 278 7.51e-16 79.7
MS.gene85887.t1 AT2G34830 48.333 60 29 2 154 211 216 275 7.62e-11 64.3
MS.gene85887.t1 AT1G69810 41.489 94 51 3 304 395 128 219 8.59e-16 78.6
MS.gene85887.t1 AT1G69810 45.455 66 33 2 149 211 141 206 1.80e-11 65.5
MS.gene85887.t1 AT1G69810 43.333 90 47 3 308 395 190 277 1.34e-15 78.6
MS.gene85887.t1 AT1G69810 45.455 66 33 2 149 211 199 264 2.12e-11 65.9
MS.gene85887.t1 AT5G45050 50.794 63 30 1 322 383 1042 1104 8.28e-15 77.4
MS.gene85887.t1 AT5G45050 50.794 63 30 1 322 383 1181 1243 8.83e-15 77.4
MS.gene85887.t1 AT5G45050 50.794 63 30 1 322 383 1153 1215 8.86e-15 77.4
MS.gene85887.t1 AT2G40740 51.562 64 27 2 147 206 167 230 1.65e-14 74.3
MS.gene85887.t1 AT2G40740 51.562 64 27 2 147 206 176 239 2.45e-14 73.9
MS.gene85887.t1 AT1G66560 51.724 58 25 1 321 375 103 160 3.86e-13 69.3
MS.gene85887.t1 AT2G46400 36.607 112 59 3 267 375 59 161 1.34e-12 68.6
MS.gene85887.t1 AT4G11070 37.500 112 55 5 127 229 89 194 1.80e-12 68.2
MS.gene85887.t1 AT4G11070 37.500 112 55 5 127 229 121 226 2.41e-12 68.2
MS.gene85887.t1 AT3G56400 39.024 82 43 2 313 387 112 193 3.11e-12 67.4
MS.gene85887.t1 AT5G24110 43.243 74 37 3 137 206 98 170 7.58e-12 66.2
MS.gene85887.t1 AT4G23810 43.662 71 35 3 140 206 146 215 8.01e-12 66.6
MS.gene85887.t1 AT5G45260 43.137 102 44 7 122 216 1179 1273 2.23e-11 66.6
MS.gene85887.t1 AT5G45260 32.258 155 84 6 233 383 1136 1273 8.72e-11 64.7
MS.gene85887.t1 AT1G66600 32.979 94 60 1 320 410 102 195 9.73e-11 62.4

Find 112 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACGAAAATTTACCTCCTTT+TGG 0.247021 5.3:+30333615 None:intergenic
CCTGTTGCTTGACTAGATTC+AGG 0.247870 5.3:+30333721 None:intergenic
TATGTTGTTATGACTGCTTT+AGG 0.286428 5.3:+30332889 None:intergenic
GGTTATAGATGGCGAAAATA+TGG 0.304499 5.3:-30333268 MS.gene85887:CDS
TTTGATCGCTTATTAGGATT+CGG 0.306605 5.3:+30333838 None:intergenic
GGCTACAATTGGAGGAAATA+TGG 0.308838 5.3:-30334006 MS.gene85887:CDS
TATGGACAGAAAGTTGTTAA+AGG 0.320018 5.3:-30333250 MS.gene85887:CDS
AACAACCTGTTGCTCGTCTA+AGG 0.321756 5.3:-30332720 MS.gene85887:CDS
TAACTGTCCTGTCAAGAAAA+AGG 0.329083 5.3:-30333926 MS.gene85887:CDS
ATAACCGCAATTATTTATAA+AGG 0.337197 5.3:-30333880 MS.gene85887:CDS
AAGGTTGAGCGTTCGCTTGC+TGG 0.338256 5.3:-30333907 MS.gene85887:CDS
TTGATCGCTTATTAGGATTC+GGG 0.369634 5.3:+30333839 None:intergenic
CGGTGGTTGGTGGTGGTGAA+GGG 0.378413 5.3:-30336505 MS.gene85887:CDS
GCGGTGGTTGGTGGTGGTGA+AGG 0.383918 5.3:-30336506 MS.gene85887:CDS
CTTCAAATGAAAATTCAAAT+AGG 0.383970 5.3:-30333804 MS.gene85887:CDS
CTCTCTAACTTATTTGCTGA+TGG 0.386992 5.3:-30336395 MS.gene85887:CDS
GCAACAGGCGAACATCTATC+TGG 0.394194 5.3:-30333706 MS.gene85887:CDS
GTGGTTGGTGGTGGTGAAGG+GGG 0.394636 5.3:-30336503 MS.gene85887:CDS
TAACTGTGAAGCATTATTGT+TGG 0.399399 5.3:+30332810 None:intergenic
ACCGGTGTGCTTGATTCATC+TGG 0.405460 5.3:-30336308 MS.gene85887:CDS
ATTTCTGAGAAGCCTAGTTT+TGG 0.416394 5.3:-30332772 MS.gene85887:CDS
GAGGAAATATGGACAGAAAC+AGG 0.418222 5.3:-30333995 MS.gene85887:CDS
CATATGATGTAGGTATCCTT+TGG 0.418514 5.3:-30334207 MS.gene85887:intron
TTCAGCCTTAGACGAGCAAC+AGG 0.424679 5.3:+30332715 None:intergenic
CGTACGTGGCGGAAGAGTTA+AGG 0.426728 5.3:+30336463 None:intergenic
AAGTTAGAGAGAAGAGTCAT+AGG 0.429317 5.3:+30336407 None:intergenic
GTTATGCATATTAGTACTGT+TGG 0.430264 5.3:+30334134 None:intergenic
TGGCTTCTTTCCACATCCTC+AGG 0.432417 5.3:-30336288 MS.gene85887:intron
GGTGGTTGGTGGTGGTGAAG+GGG 0.432749 5.3:-30336504 MS.gene85887:CDS
TTGGTAGCATTGGTATTGGC+GGG 0.437748 5.3:-30332753 MS.gene85887:CDS
CGCCGGTTCCATGGTGTCTC+CGG 0.440020 5.3:-30336342 MS.gene85887:CDS
TGGTTGGTGGTGGTGAAGGG+GGG 0.442697 5.3:-30336502 MS.gene85887:CDS
TCAGCTTCTCGCCGGTTCCA+TGG 0.442799 5.3:-30336351 MS.gene85887:CDS
TGCCGGAGACACCATGGAAC+CGG 0.443822 5.3:+30336340 None:intergenic
AAAACTAGGCTTCTCAGAAA+TGG 0.445800 5.3:+30332774 None:intergenic
GAAGAAGAAGCGGTGGTTGG+TGG 0.453456 5.3:-30336515 MS.gene85887:CDS
ACACCGGTGGTTGCCGCTGC+CGG 0.456631 5.3:+30336323 None:intergenic
TTAAAGGAAATCCTTATCCT+AGG 0.456816 5.3:-30333234 MS.gene85887:intron
TTCCATGGTGTCTCCGGCAG+CGG 0.460115 5.3:-30336336 MS.gene85887:CDS
AGAAGGCTGCAACCTTTGTT+CGG 0.460546 5.3:+30334059 None:intergenic
CTGTTGCTTGACTAGATTCA+GGG 0.461603 5.3:+30333722 None:intergenic
CTTCTTCCTTCCACGGTGGT+CGG 0.470680 5.3:+30336534 None:intergenic
TCCTTCTCTCAGCTTCTCGC+CGG 0.478730 5.3:-30336359 MS.gene85887:CDS
GAAGTTGATCTCTTAGATGA+TGG 0.483367 5.3:-30333289 MS.gene85887:CDS
CCGATGATGGCTACAATTGG+AGG 0.485258 5.3:-30334014 MS.gene85887:CDS
TTCAAACTCAATGTCTAAGA+TGG 0.487664 5.3:-30333746 MS.gene85887:CDS
ACAGTACTATGTGAAGTTGT+TGG 0.490613 5.3:+30333346 None:intergenic
CTGCCGATGATGGCTACAAT+TGG 0.491271 5.3:-30334017 MS.gene85887:CDS
GAAGCATATCACCTAGGATA+AGG 0.495253 5.3:+30333223 None:intergenic
CCTGAATCTAGTCAAGCAAC+AGG 0.496614 5.3:-30333721 MS.gene85887:CDS
TCTTAGATGATGGTTATAGA+TGG 0.497586 5.3:-30333279 MS.gene85887:CDS
GCTTCTTCTTCTTCCTTCCA+CGG 0.497742 5.3:+30336527 None:intergenic
GAATTGAGCCCGACTCCAAA+AGG 0.499145 5.3:-30333630 MS.gene85887:CDS
GCAGTCATAACAACATATGA+AGG 0.514254 5.3:-30332883 MS.gene85887:CDS
TGGCTATTAGTCTTAGCTGC+TGG 0.515585 5.3:+30332841 None:intergenic
GAGAGAAGAGTCATAGGACC+AGG 0.520057 5.3:+30336413 None:intergenic
ATACCAATGCTACCAAAACT+AGG 0.520202 5.3:+30332760 None:intergenic
TCTCCGGCAGCGGCAACCAC+CGG 0.525026 5.3:-30336326 MS.gene85887:CDS
CCTCCAATTGTAGCCATCAT+CGG 0.527967 5.3:+30334014 None:intergenic
TTTGGTAGCATTGGTATTGG+CGG 0.529217 5.3:-30332754 MS.gene85887:CDS
TTCGGAGAGAGGAGCATGAT+CGG 0.537950 5.3:+30334077 None:intergenic
GAAGAAGAAGAAGCGGTGGT+TGG 0.539314 5.3:-30336518 MS.gene85887:CDS
GTGCACTTGTAATAACTTCG+AGG 0.540882 5.3:+30333955 None:intergenic
CTTAACTCTTCCGCCACGTA+CGG 0.541928 5.3:-30336462 MS.gene85887:CDS
TCTTAGCTGCTGGAACATCA+TGG 0.545160 5.3:+30332851 None:intergenic
TTATCAACATTCAACGAAGA+AGG 0.545540 5.3:+30334042 None:intergenic
TGCAACCTTTGTTCGGAGAG+AGG 0.548420 5.3:+30334066 None:intergenic
AATGGACCGACCACCGTGGA+AGG 0.549974 5.3:-30336540 MS.gene85887:CDS
CTCTCCTTTATAAATAATTG+CGG 0.550517 5.3:+30333876 None:intergenic
GAAGAAGCGGTGGTTGGTGG+TGG 0.551361 5.3:-30336512 MS.gene85887:CDS
CAATTGTAGCCATCATCGGC+AGG 0.552856 5.3:+30334018 None:intergenic
GGTAGCATTGGTATTGGCGG+GGG 0.556601 5.3:-30332751 MS.gene85887:CDS
GTTGATAAGCCTGCCGATGA+TGG 0.561742 5.3:-30334027 MS.gene85887:CDS
GTTAAGGTGGGTCGCTGTGG+TGG 0.562648 5.3:+30336479 None:intergenic
AATGAAAATTCAAATAGGCA+AGG 0.563913 5.3:-30333799 MS.gene85887:CDS
ATCTAAGAGATCAACTTCAC+TGG 0.563948 5.3:+30333294 None:intergenic
ATGAAAATTCAAATAGGCAA+GGG 0.564284 5.3:-30333798 MS.gene85887:CDS
CAGATGATAAATGTTCGACT+TGG 0.580457 5.3:+30334112 None:intergenic
GGAGCATGATCGGTGGATGT+TGG 0.586815 5.3:+30334087 None:intergenic
ACCGGCGAGAAGCTGAGAGA+AGG 0.597313 5.3:+30336358 None:intergenic
TTATTTGCTGATGGTGATGA+CGG 0.597799 5.3:-30336386 MS.gene85887:CDS
ACGAGTGATAGTGAGGATGT+AGG 0.598153 5.3:-30333682 MS.gene85887:CDS
GTGAAAAGTGCGTCCGTACG+TGG 0.598428 5.3:+30336449 None:intergenic
ACGTGGCGGAAGAGTTAAGG+TGG 0.606182 5.3:+30336466 None:intergenic
TGTTGCTCGTCTAAGGCTGA+AGG 0.606467 5.3:-30332713 MS.gene85887:CDS
TGCCGCTGCCGGAGACACCA+TGG 0.607760 5.3:+30336334 None:intergenic
AGGACCAGGGCTAAAACCAC+CGG 0.613111 5.3:+30336427 None:intergenic
TGGTAGCATTGGTATTGGCG+GGG 0.613610 5.3:-30332752 MS.gene85887:CDS
ATGCTCCTCTCTCCGAACAA+AGG 0.614608 5.3:-30334071 MS.gene85887:CDS
TATGGACAGAAACAGGTGAA+AGG 0.615984 5.3:-30333988 MS.gene85887:CDS
AGAGTTAAGGTGGGTCGCTG+TGG 0.617498 5.3:+30336476 None:intergenic
ATCTGGAACGAGTGATAGTG+AGG 0.619905 5.3:-30333689 MS.gene85887:CDS
CATTATTGTTGGCAATAGTG+TGG 0.625832 5.3:+30332821 None:intergenic
TGCTTTCGAACGTTACAACT+CGG 0.628437 5.3:+30332934 None:intergenic
GGAGAGAGGAGCATGATCGG+TGG 0.628568 5.3:+30334080 None:intergenic
ACAGCAGCAACCACTGACAC+AGG 0.639404 5.3:-30334178 MS.gene85887:CDS
GTGCTGATTCAACTTATCAA+CGG 0.645507 5.3:-30333774 MS.gene85887:CDS
GCAACCACTGACACAGGTCT+CGG 0.647175 5.3:-30334172 MS.gene85887:CDS
AGGTGATCGTGAAACAGAAG+TGG 0.657969 5.3:-30333662 MS.gene85887:CDS
TTGCTGCTGTGTCATTCCAA+AGG 0.666392 5.3:+30334191 None:intergenic
AGATGAATCAAGCACACCGG+TGG 0.671965 5.3:+30336310 None:intergenic
AGAGAAGAGTCATAGGACCA+GGG 0.673747 5.3:+30336414 None:intergenic
TGAGCCGAGACCTGTGTCAG+TGG 0.676749 5.3:+30334168 None:intergenic
GCCAGATGAATCAAGCACAC+CGG 0.677709 5.3:+30336307 None:intergenic
GAAGGAAGAAGAAGAAGCGG+TGG 0.680960 5.3:-30336522 MS.gene85887:CDS
AAAAGTGCGTCCGTACGTGG+CGG 0.684333 5.3:+30336452 None:intergenic
GTGGAAGGAAGAAGAAGAAG+CGG 0.684972 5.3:-30336525 MS.gene85887:CDS
TTGAGCCCGACTCCAAAAGG+AGG 0.687140 5.3:-30333627 MS.gene85887:intron
CGTGGCGGAAGAGTTAAGGT+GGG 0.691075 5.3:+30336467 None:intergenic
ACACAGGTCTCGGCTCACGA+AGG 0.691681 5.3:-30334162 MS.gene85887:CDS
TCTTCTTCTTCCTTCCACGG+TGG 0.698127 5.3:+30336530 None:intergenic
TGGAAATGGACCGACCACCG+TGG 0.747666 5.3:-30336544 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATATGTTAAATAATGTA+AGG + chr5.3:30334853-30334872 None:intergenic 10.0%
!! GTATAAAGTTAATTTATTTA+AGG - chr5.3:30333073-30333092 MS.gene85887:intron 10.0%
!!! ACTTTTTAAAAGAATTTAAA+TGG - chr5.3:30333395-30333414 MS.gene85887:intron 10.0%
!!! ATAGTAATATTTCTAAATTT+GGG + chr5.3:30334045-30334064 None:intergenic 10.0%
!!! TTTTCTTTTTAGAAAATATA+TGG + chr5.3:30333588-30333607 None:intergenic 10.0%
!! TTTAATATAAGATACTTTCT+TGG - chr5.3:30333275-30333294 MS.gene85887:CDS 15.0%
!!! GATAGTAATATTTCTAAATT+TGG + chr5.3:30334046-30334065 None:intergenic 15.0%
!! AAAAAGAGATTATCTAAAAG+TGG + chr5.3:30334173-30334192 None:intergenic 20.0%
!! AACAAATTACATAGAAATGA+AGG + chr5.3:30333509-30333528 None:intergenic 20.0%
!! ACAAATTACATAGAAATGAA+GGG + chr5.3:30333508-30333527 None:intergenic 20.0%
!! AGAATTTAAATGGTATGTAT+AGG - chr5.3:30333405-30333424 MS.gene85887:intron 20.0%
!! ATAACCGCAATTATTTATAA+AGG - chr5.3:30335355-30335374 MS.gene85887:intron 20.0%
!! ATAAGCTATATACATAAAGA+AGG + chr5.3:30332980-30332999 None:intergenic 20.0%
!! CTTCAAATGAAAATTCAAAT+AGG - chr5.3:30335431-30335450 MS.gene85887:intron 20.0%
!! GTTTGTATATAAACAATGTA+CGG + chr5.3:30334503-30334522 None:intergenic 20.0%
!! TATATGTCAAAGTTGTAAAT+AGG - chr5.3:30335656-30335675 MS.gene85887:intron 20.0%
!! TTAACACTTATATATAACAG+TGG + chr5.3:30333052-30333071 None:intergenic 20.0%
!! TTTACAACTTTGACATATAT+CGG + chr5.3:30335655-30335674 None:intergenic 20.0%
!!! AAGAAAATGTTTCCATTTTT+GGG + chr5.3:30333130-30333149 None:intergenic 20.0%
!!! CAGTATTTACAACATTTTTA+TGG - chr5.3:30335772-30335791 MS.gene85887:intron 20.0%
!!! GATTTTGCTTATAGTTTTTA+CGG - chr5.3:30336176-30336195 MS.gene85887:intron 20.0%
!!! TAAGAAAATGTTTCCATTTT+TGG + chr5.3:30333131-30333150 None:intergenic 20.0%
!!! TGTTTTCTTACATAATGTTT+AGG - chr5.3:30336257-30336276 MS.gene85887:intron 20.0%
!!! TTAAAATATTCCTACACTTT+TGG - chr5.3:30334010-30334029 MS.gene85887:CDS 20.0%
!!! TTGTATTTAGTTCATTAATC+AGG + chr5.3:30335728-30335747 None:intergenic 20.0%
! AATGAAAATTCAAATAGGCA+AGG - chr5.3:30335436-30335455 MS.gene85887:intron 25.0%
! ACAATAACAAGACAACATAA+AGG + chr5.3:30335831-30335850 None:intergenic 25.0%
! ACGAAATTCTTATAAGCTAT+AGG + chr5.3:30334367-30334386 None:intergenic 25.0%
! ACTTAACATGATTATACTTG+AGG - chr5.3:30334919-30334938 MS.gene85887:intron 25.0%
! ACTTTACTTAGCATAATGTA+AGG + chr5.3:30334759-30334778 None:intergenic 25.0%
! ATAAATGAGACACACTATTA+GGG + chr5.3:30336210-30336229 None:intergenic 25.0%
! ATGAAAATTCAAATAGGCAA+GGG - chr5.3:30335437-30335456 MS.gene85887:intron 25.0%
! CTCTCCTTTATAAATAATTG+CGG + chr5.3:30335362-30335381 None:intergenic 25.0%
! CTTTACTTAGCATAATGTAA+GGG + chr5.3:30334758-30334777 None:intergenic 25.0%
! GTTAGAAACTAATTCAAACT+AGG - chr5.3:30334421-30334440 MS.gene85887:intron 25.0%
! TAAATAAGCCAAATTTAACG+AGG + chr5.3:30336089-30336108 None:intergenic 25.0%
! TTAAAAGGATCAAACACAAT+TGG + chr5.3:30333352-30333371 None:intergenic 25.0%
! TTCATGATAAAGGGAAAAAA+AGG + chr5.3:30334571-30334590 None:intergenic 25.0%
!! ACAATATCTGAAATACAACT+TGG - chr5.3:30333890-30333909 MS.gene85887:CDS 25.0%
!!! ATATTCGTTTTCCTTGTTTT+TGG + chr5.3:30333714-30333733 None:intergenic 25.0%
!!! GTAATTTTATCCAAAAGTGT+AGG + chr5.3:30334023-30334042 None:intergenic 25.0%
AATCGATGAACATGAAAAGT+TGG + chr5.3:30336156-30336175 None:intergenic 30.0%
AATTCTTGAACCAAACTTCA+CGG + chr5.3:30333992-30334011 None:intergenic 30.0%
ACTATGAACTTGTACTTACA+TGG + chr5.3:30333644-30333663 None:intergenic 30.0%
ACTCTTAAACACAACATACT+AGG + chr5.3:30333432-30333451 None:intergenic 30.0%
ATTCACGAATAGTTCACAAT+AGG + chr5.3:30336058-30336077 None:intergenic 30.0%
ATTTGATATAGTGATCCAGT+AGG - chr5.3:30333677-30333696 MS.gene85887:CDS 30.0%
CAATAGGTGAAATTAAAGTG+TGG + chr5.3:30336042-30336061 None:intergenic 30.0%
CGGCTAAAAAATGATTTGAT+TGG + chr5.3:30333797-30333816 None:intergenic 30.0%
CTATGAACTTGTACTTACAT+GGG + chr5.3:30333643-30333662 None:intergenic 30.0%
GATAAATGAGACACACTATT+AGG + chr5.3:30336211-30336230 None:intergenic 30.0%
GTGTCATATATGCTCTATTT+AGG - chr5.3:30334732-30334751 MS.gene85887:intron 30.0%
GTTATGCATATTAGTACTGT+TGG + chr5.3:30335104-30335123 None:intergenic 30.0%
GTTGACAAGATTATCTAAAG+TGG + chr5.3:30334214-30334233 None:intergenic 30.0%
TAAGTAAAGTCTCAAACTCT+TGG - chr5.3:30334769-30334788 MS.gene85887:intron 30.0%
TATGGACAGAAAGTTGTTAA+AGG - chr5.3:30335985-30336004 MS.gene85887:intron 30.0%
TATGTTGTTATGACTGCTTT+AGG + chr5.3:30336349-30336368 None:intergenic 30.0%
TCTATATATCCTCACTATCT+TGG + chr5.3:30334962-30334981 None:intergenic 30.0%
TGCAGAAAAGTTTGTATTTG+AGG + chr5.3:30334540-30334559 None:intergenic 30.0%
TTAAAGGAAATCCTTATCCT+AGG - chr5.3:30336001-30336020 MS.gene85887:intron 30.0%
TTACTGTGGGAAAAACATTT+GGG + chr5.3:30334136-30334155 None:intergenic 30.0%
TTATCAACATTCAACGAAGA+AGG + chr5.3:30335196-30335215 None:intergenic 30.0%
TTCAAACTCAATGTCTAAGA+TGG - chr5.3:30335489-30335508 MS.gene85887:intron 30.0%
TTTACTGTGGGAAAAACATT+TGG + chr5.3:30334137-30334156 None:intergenic 30.0%
TTTGATCGCTTATTAGGATT+CGG + chr5.3:30335400-30335419 None:intergenic 30.0%
! ATAAAGGGAAAAAAAGGCAT+TGG + chr5.3:30334565-30334584 None:intergenic 30.0%
! TAACTGTGAAGCATTATTGT+TGG + chr5.3:30336428-30336447 None:intergenic 30.0%
! TACGAAAATTTACCTCCTTT+TGG + chr5.3:30335623-30335642 None:intergenic 30.0%
! TCAATAGTCCTCTCTTTTAA+GGG - chr5.3:30334472-30334491 MS.gene85887:intron 30.0%
! TCTGAAATACAACTTGGTAA+AGG - chr5.3:30333896-30333915 MS.gene85887:CDS 30.0%
! TCTTAGATGATGGTTATAGA+TGG - chr5.3:30335956-30335975 MS.gene85887:intron 30.0%
! TCTTGGTGCATTATATTATG+TGG - chr5.3:30333292-30333311 MS.gene85887:CDS 30.0%
! TTGATTTTGCGATCCAAAAA+AGG - chr5.3:30333453-30333472 MS.gene85887:intron 30.0%
! TTGTATTTGAGGCATTATCA+AGG + chr5.3:30334529-30334548 None:intergenic 30.0%
! TTTTCCCTTTATCATGAAAC+AGG - chr5.3:30334573-30334592 MS.gene85887:intron 30.0%
!! AATCATTAACTTGTGTCTTG+AGG - chr5.3:30333229-30333248 MS.gene85887:intron 30.0%
!! ATCATTAACTTGTGTCTTGA+GGG - chr5.3:30333230-30333249 MS.gene85887:intron 30.0%
!! CAGATATTGTTTTATTGACG+TGG + chr5.3:30333880-30333899 None:intergenic 30.0%
!! TGCATAGTTCTAAACTATGT+AGG + chr5.3:30334633-30334652 None:intergenic 30.0%
!! TGTTTTTGCATCTGTTTCAA+AGG - chr5.3:30334096-30334115 MS.gene85887:CDS 30.0%
!!! ATCATTTTTTAGCCGTTTTG+AGG - chr5.3:30333802-30333821 MS.gene85887:CDS 30.0%
AAAACTAGGCTTCTCAGAAA+TGG + chr5.3:30336464-30336483 None:intergenic 35.0%
AAGTTAGAGAGAAGAGTCAT+AGG + chr5.3:30332831-30332850 None:intergenic 35.0%
ACAAGACAACATAAAGGCAA+AGG + chr5.3:30335825-30335844 None:intergenic 35.0%
ACAGTACTATGTGAAGTTGT+TGG + chr5.3:30335892-30335911 None:intergenic 35.0%
ACATAGAAATGAAGGGCAAA+CGG + chr5.3:30333501-30333520 None:intergenic 35.0%
AGTCAGTTTGACCAAAAACA+AGG - chr5.3:30333700-30333719 MS.gene85887:CDS 35.0%
AGTTCATTAATCAGGTGCAT+TGG + chr5.3:30335720-30335739 None:intergenic 35.0%
ATACCAATGCTACCAAAACT+AGG + chr5.3:30336478-30336497 None:intergenic 35.0%
ATCTAAGAGATCAACTTCAC+TGG + chr5.3:30335944-30335963 None:intergenic 35.0%
CAAAGGATACCTACATCATA+TGG + chr5.3:30335030-30335049 None:intergenic 35.0%
CAATATCCACCATATGATGT+AGG - chr5.3:30335018-30335037 MS.gene85887:intron 35.0%
CACCTTTATGTAGAATTCCA+AGG + chr5.3:30333835-30333854 None:intergenic 35.0%
CAGATGATAAATGTTCGACT+TGG + chr5.3:30335126-30335145 None:intergenic 35.0%
CATAAAGGCAAAGGATTACT+CGG + chr5.3:30335816-30335835 None:intergenic 35.0%
CATATGATGTAGGTATCCTT+TGG - chr5.3:30335028-30335047 MS.gene85887:intron 35.0%
CATGTTAAGCAACCCAAAAA+TGG - chr5.3:30333115-30333134 MS.gene85887:intron 35.0%
CATTATTGTTGGCAATAGTG+TGG + chr5.3:30336417-30336436 None:intergenic 35.0%
CTGGATCACTATATCAAATG+AGG + chr5.3:30333676-30333695 None:intergenic 35.0%
GACCTTGGAATTCTACATAA+AGG - chr5.3:30333830-30333849 MS.gene85887:CDS 35.0%
GCAGTCATAACAACATATGA+AGG - chr5.3:30336352-30336371 MS.gene85887:CDS 35.0%
GGTTATAGATGGCGAAAATA+TGG - chr5.3:30335967-30335986 MS.gene85887:intron 35.0%
GTAAATTTCACCGTGAAGTT+TGG - chr5.3:30333979-30333998 MS.gene85887:CDS 35.0%
GTTCATTAATCAGGTGCATT+GGG + chr5.3:30335719-30335738 None:intergenic 35.0%
TAACTGTCCTGTCAAGAAAA+AGG - chr5.3:30335309-30335328 MS.gene85887:intron 35.0%
TACGAAGAGACAAGTAAATG+TGG + chr5.3:30333962-30333981 None:intergenic 35.0%
TAGGTGAAATTAAAGTGTGG+AGG + chr5.3:30336039-30336058 None:intergenic 35.0%
TGAAACAGATGCAAAAACAG+TGG + chr5.3:30334095-30334114 None:intergenic 35.0%
TGAACTATTCGTGAATGTTG+TGG - chr5.3:30336062-30336081 MS.gene85887:intron 35.0%
TTACTACTTCCAAGATAGTG+AGG - chr5.3:30334950-30334969 MS.gene85887:intron 35.0%
TTGATCGCTTATTAGGATTC+GGG + chr5.3:30335399-30335418 None:intergenic 35.0%
TTGATGCAGACTACTAATGA+TGG - chr5.3:30334812-30334831 MS.gene85887:intron 35.0%
TTGGTAAAGGCTCTTAAATC+TGG - chr5.3:30333909-30333928 MS.gene85887:CDS 35.0%
! CAATAGTCCTCTCTTTTAAG+GGG - chr5.3:30334473-30334492 MS.gene85887:intron 35.0%
! CTCTCTAACTTATTTGCTGA+TGG - chr5.3:30332840-30332859 MS.gene85887:CDS 35.0%
! GAAGTTGATCTCTTAGATGA+TGG - chr5.3:30335946-30335965 MS.gene85887:intron 35.0%
! GTCAATAGTCCTCTCTTTTA+AGG - chr5.3:30334471-30334490 MS.gene85887:intron 35.0%
! GTGTCTTTTGATCGCTTATT+AGG + chr5.3:30335406-30335425 None:intergenic 35.0%
! GTTCTAAACTATGTAGGCTA+CGG + chr5.3:30334627-30334646 None:intergenic 35.0%
! TAAAGAAGGATTTTCACCTG+AGG + chr5.3:30332966-30332985 None:intergenic 35.0%
! TTATTTGCTGATGGTGATGA+CGG - chr5.3:30332849-30332868 MS.gene85887:CDS 35.0%
! TTTTTCTTGACAGGACAGTT+AGG + chr5.3:30335310-30335329 None:intergenic 35.0%
!! AATAGTCCTCTCTTTTAAGG+GGG - chr5.3:30334474-30334493 MS.gene85887:intron 35.0%
!! ATTTCTGAGAAGCCTAGTTT+TGG - chr5.3:30336463-30336482 MS.gene85887:CDS 35.0%
!! GTAGTTTGCACGATGATTTT+AGG + chr5.3:30335922-30335941 None:intergenic 35.0%
!! GTGCTGATTCAACTTATCAA+CGG - chr5.3:30335461-30335480 MS.gene85887:intron 35.0%
!! TGTTTTATTGACGTGGTCTA+TGG + chr5.3:30333873-30333892 None:intergenic 35.0%
!!! AATTTACCTCCTTTTGGAGT+CGG + chr5.3:30335617-30335636 None:intergenic 35.0%
!!! AGTTTTGGTAGCATTGGTAT+TGG - chr5.3:30336478-30336497 MS.gene85887:CDS 35.0%
!!! TCCTTTTAACTTTCTAGCGA+CGG - chr5.3:30333363-30333382 MS.gene85887:CDS 35.0%
!!! TTTTTGGGTTGCTTAACATG+TGG + chr5.3:30333115-30333134 None:intergenic 35.0%
ACAGAGACACGTCTAATTTC+AGG + chr5.3:30334667-30334686 None:intergenic 40.0%
AGGATACCTACATCATATGG+TGG + chr5.3:30335027-30335046 None:intergenic 40.0%
CCTGCCTGTTTCATGATAAA+GGG + chr5.3:30334580-30334599 None:intergenic 40.0%
GAAGCATATCACCTAGGATA+AGG + chr5.3:30336015-30336034 None:intergenic 40.0%
GAGGAAATATGGACAGAAAC+AGG - chr5.3:30335240-30335259 MS.gene85887:intron 40.0%
GGCTACAATTGGAGGAAATA+TGG - chr5.3:30335229-30335248 MS.gene85887:intron 40.0%
GTGCACTTGTAATAACTTCG+AGG + chr5.3:30335283-30335302 None:intergenic 40.0%
GTTGTGGACCTCGTTAAATT+TGG - chr5.3:30336078-30336097 MS.gene85887:intron 40.0%
TATCAAGACACCAATGCACT+TGG + chr5.3:30334692-30334711 None:intergenic 40.0%
TATGGACAGAAACAGGTGAA+AGG - chr5.3:30335247-30335266 MS.gene85887:intron 40.0%
TCCGTCGCTAGAAAGTTAAA+AGG + chr5.3:30333367-30333386 None:intergenic 40.0%
TCCTGCCTGTTTCATGATAA+AGG + chr5.3:30334581-30334600 None:intergenic 40.0%
TGCTTTCGAACGTTACAACT+CGG + chr5.3:30336304-30336323 None:intergenic 40.0%
! AAGTGCATTGGTGTCTTGAT+AGG - chr5.3:30334691-30334710 MS.gene85887:intron 40.0%
! CTGTTGCTTGACTAGATTCA+GGG + chr5.3:30335516-30335535 None:intergenic 40.0%
! GTTTTTCCCACAGTAAAGCT+TGG - chr5.3:30334140-30334159 MS.gene85887:CDS 40.0%
!! AACAGTGGTTCTAGTGTGTT+TGG + chr5.3:30334080-30334099 None:intergenic 40.0%
!! TTTGGTAGCATTGGTATTGG+CGG - chr5.3:30336481-30336500 MS.gene85887:CDS 40.0%
!!! AAGCCTAGTTTTGGTAGCAT+TGG - chr5.3:30336472-30336491 MS.gene85887:CDS 40.0%
!!! ATTTACCTCCTTTTGGAGTC+GGG + chr5.3:30335616-30335635 None:intergenic 40.0%
!!! TGCACTGCACTAACCTTTTT+TGG + chr5.3:30333469-30333488 None:intergenic 40.0%
!!! TTTTAACTTTCTAGCGACGG+AGG - chr5.3:30333366-30333385 MS.gene85887:CDS 40.0%
!!! TTTTAGCCGTTTTGAGGTAG+AGG - chr5.3:30333808-30333827 MS.gene85887:CDS 40.0%
AACAACCTGTTGCTCGTCTA+AGG - chr5.3:30336515-30336534 MS.gene85887:CDS 45.0%
ACCTCTTCCAAGCTTTACTG+TGG + chr5.3:30334150-30334169 None:intergenic 45.0%
AGAAGGCTGCAACCTTTGTT+CGG + chr5.3:30335179-30335198 None:intergenic 45.0%
AGAGAAGAGTCATAGGACCA+GGG + chr5.3:30332824-30332843 None:intergenic 45.0%
AGGTGATCGTGAAACAGAAG+TGG - chr5.3:30335573-30335592 MS.gene85887:intron 45.0%
CAAGGTCCTCTACCTCAAAA+CGG + chr5.3:30333817-30333836 None:intergenic 45.0%
CCCTTTATCATGAAACAGGC+AGG - chr5.3:30334577-30334596 MS.gene85887:intron 45.0%
CCTCCAATTGTAGCCATCAT+CGG + chr5.3:30335224-30335243 None:intergenic 45.0%
CCTCTTCCAAGCTTTACTGT+GGG + chr5.3:30334149-30334168 None:intergenic 45.0%
CCTGAATCTAGTCAAGCAAC+AGG - chr5.3:30335514-30335533 MS.gene85887:intron 45.0%
CTGTTTCAAAGGCAACACAC+TGG - chr5.3:30334107-30334126 MS.gene85887:CDS 45.0%
GCTTCTTCTTCTTCCTTCCA+CGG + chr5.3:30332711-30332730 None:intergenic 45.0%
GTGGAAGGAAGAAGAAGAAG+CGG - chr5.3:30332710-30332729 MS.gene85887:CDS 45.0%
TCTTAGCTGCTGGAACATCA+TGG + chr5.3:30336387-30336406 None:intergenic 45.0%
TTGGTATGAGCCTACTGCAA+AGG + chr5.3:30333333-30333352 None:intergenic 45.0%
! ACGAGTGATAGTGAGGATGT+AGG - chr5.3:30335553-30335572 MS.gene85887:intron 45.0%
! AGGATTTTCACCTGAGGATG+TGG + chr5.3:30332960-30332979 None:intergenic 45.0%
! ATCTGGAACGAGTGATAGTG+AGG - chr5.3:30335546-30335565 MS.gene85887:intron 45.0%
! CCTGTTGCTTGACTAGATTC+AGG + chr5.3:30335517-30335536 None:intergenic 45.0%
! CGCTCAACCTTTTTCTTGAC+AGG + chr5.3:30335319-30335338 None:intergenic 45.0%
! TTGCTGCTGTGTCATTCCAA+AGG + chr5.3:30335047-30335066 None:intergenic 45.0%
! TTGGTCAAACTGACTCCTAC+TGG + chr5.3:30333695-30333714 None:intergenic 45.0%
!! TGGCTATTAGTCTTAGCTGC+TGG + chr5.3:30336397-30336416 None:intergenic 45.0%
!! TTGGTAGCATTGGTATTGGC+GGG - chr5.3:30336482-30336501 MS.gene85887:CDS 45.0%
!! TATAAAGTTAATTTATTTAA+GGG - chr5.3:30333074-30333093 MS.gene85887:intron 5.0%
ACCGGTGTGCTTGATTCATC+TGG - chr5.3:30332927-30332946 MS.gene85887:CDS 50.0%
AGATGAATCAAGCACACCGG+TGG + chr5.3:30332928-30332947 None:intergenic 50.0%
ATGCTCCTCTCTCCGAACAA+AGG - chr5.3:30335164-30335183 MS.gene85887:intron 50.0%
CAATTGTAGCCATCATCGGC+AGG + chr5.3:30335220-30335239 None:intergenic 50.0%
CCCACAGTAAAGCTTGGAAG+AGG - chr5.3:30334146-30334165 MS.gene85887:CDS 50.0%
CTTAACTCTTCCGCCACGTA+CGG - chr5.3:30332773-30332792 MS.gene85887:CDS 50.0%
GAAGAAGAAGAAGCGGTGGT+TGG - chr5.3:30332717-30332736 MS.gene85887:CDS 50.0%
GAAGGAAGAAGAAGAAGCGG+TGG - chr5.3:30332713-30332732 MS.gene85887:CDS 50.0%
GAATTGAGCCCGACTCCAAA+AGG - chr5.3:30335605-30335624 MS.gene85887:intron 50.0%
GAGAGAAGAGTCATAGGACC+AGG + chr5.3:30332825-30332844 None:intergenic 50.0%
GCAACAGGCGAACATCTATC+TGG - chr5.3:30335529-30335548 MS.gene85887:intron 50.0%
GCCAGATGAATCAAGCACAC+CGG + chr5.3:30332931-30332950 None:intergenic 50.0%
GTCTCTGTGTCCAAGTGCAT+TGG - chr5.3:30334679-30334698 MS.gene85887:intron 50.0%
TCTTCTTCTTCCTTCCACGG+TGG + chr5.3:30332708-30332727 None:intergenic 50.0%
TGCAACCTTTGTTCGGAGAG+AGG + chr5.3:30335172-30335191 None:intergenic 50.0%
TGGCTTCTTTCCACATCCTC+AGG - chr5.3:30332947-30332966 MS.gene85887:CDS 50.0%
TGTCTCGTGTCCTTTGCAGT+AGG - chr5.3:30333320-30333339 MS.gene85887:CDS 50.0%
TTCAGCCTTAGACGAGCAAC+AGG + chr5.3:30336523-30336542 None:intergenic 50.0%
! CCGATGATGGCTACAATTGG+AGG - chr5.3:30335221-30335240 MS.gene85887:intron 50.0%
! CTGCCGATGATGGCTACAAT+TGG - chr5.3:30335218-30335237 MS.gene85887:intron 50.0%
! GGAGGAGAAGCATATCACCT+AGG + chr5.3:30336021-30336040 None:intergenic 50.0%
! GTTGATAAGCCTGCCGATGA+TGG - chr5.3:30335208-30335227 MS.gene85887:intron 50.0%
! TGTTGCTCGTCTAAGGCTGA+AGG - chr5.3:30336522-30336541 MS.gene85887:CDS 50.0%
! TTCGGAGAGAGGAGCATGAT+CGG + chr5.3:30335161-30335180 None:intergenic 50.0%
!! TGGTAGCATTGGTATTGGCG+GGG - chr5.3:30336483-30336502 MS.gene85887:CDS 50.0%
!!! CGTTTTGAGGTAGAGGACCT+TGG - chr5.3:30333815-30333834 MS.gene85887:CDS 50.0%
AAGGTTGAGCGTTCGCTTGC+TGG - chr5.3:30335328-30335347 MS.gene85887:intron 55.0%
ACAGCAGCAACCACTGACAC+AGG - chr5.3:30335057-30335076 MS.gene85887:intron 55.0%
AGAGTTAAGGTGGGTCGCTG+TGG + chr5.3:30332762-30332781 None:intergenic 55.0%
AGGACCAGGGCTAAAACCAC+CGG + chr5.3:30332811-30332830 None:intergenic 55.0%
CGGTCACCCCCTTAAAAGAG+AGG + chr5.3:30334483-30334502 None:intergenic 55.0%
CTTCTTCCTTCCACGGTGGT+CGG + chr5.3:30332704-30332723 None:intergenic 55.0%
GAAGAAGAAGCGGTGGTTGG+TGG - chr5.3:30332720-30332739 MS.gene85887:CDS 55.0%
GCAACCACTGACACAGGTCT+CGG - chr5.3:30335063-30335082 MS.gene85887:intron 55.0%
GGAGCATGATCGGTGGATGT+TGG + chr5.3:30335151-30335170 None:intergenic 55.0%
TCCTTCTCTCAGCTTCTCGC+CGG - chr5.3:30332876-30332895 MS.gene85887:CDS 55.0%
TTGAGCCCGACTCCAAAAGG+AGG - chr5.3:30335608-30335627 MS.gene85887:intron 55.0%
! AAAAGTGCGTCCGTACGTGG+CGG + chr5.3:30332786-30332805 None:intergenic 55.0%
! ACGTGGCGGAAGAGTTAAGG+TGG + chr5.3:30332772-30332791 None:intergenic 55.0%
! CGTACGGACGCACTTTTCAC+CGG - chr5.3:30332789-30332808 MS.gene85887:CDS 55.0%
! CGTACGTGGCGGAAGAGTTA+AGG + chr5.3:30332775-30332794 None:intergenic 55.0%
! CGTGGCGGAAGAGTTAAGGT+GGG + chr5.3:30332771-30332790 None:intergenic 55.0%
! GTGAAAAGTGCGTCCGTACG+TGG + chr5.3:30332789-30332808 None:intergenic 55.0%
!! GGTAGCATTGGTATTGGCGG+GGG - chr5.3:30336484-30336503 MS.gene85887:CDS 55.0%
!!! TTCACCGGTGGTTTTAGCCC+TGG - chr5.3:30332804-30332823 MS.gene85887:CDS 55.0%
ACACAGGTCTCGGCTCACGA+AGG - chr5.3:30335073-30335092 MS.gene85887:intron 60.0%
ACCGGCGAGAAGCTGAGAGA+AGG + chr5.3:30332880-30332899 None:intergenic 60.0%
GTTAAGGTGGGTCGCTGTGG+TGG + chr5.3:30332759-30332778 None:intergenic 60.0%
TGAGCCGAGACCTGTGTCAG+TGG + chr5.3:30335070-30335089 None:intergenic 60.0%
TGCCGGAGACACCATGGAAC+CGG + chr5.3:30332898-30332917 None:intergenic 60.0%
TTCCATGGTGTCTCCGGCAG+CGG - chr5.3:30332899-30332918 MS.gene85887:CDS 60.0%
! ACGGACGCACTTTTCACCGG+TGG - chr5.3:30332792-30332811 MS.gene85887:CDS 60.0%
! GGAGAGAGGAGCATGATCGG+TGG + chr5.3:30335158-30335177 None:intergenic 60.0%
!! CGGTGGTTGGTGGTGGTGAA+GGG - chr5.3:30332730-30332749 MS.gene85887:CDS 60.0%
!! GAAGAAGCGGTGGTTGGTGG+TGG - chr5.3:30332723-30332742 MS.gene85887:CDS 60.0%
!! GGTGGTTGGTGGTGGTGAAG+GGG - chr5.3:30332731-30332750 MS.gene85887:CDS 60.0%
!! GTGGTTGGTGGTGGTGAAGG+GGG - chr5.3:30332732-30332751 MS.gene85887:CDS 60.0%
!! TCAGCTTCTCGCCGGTTCCA+TGG - chr5.3:30332884-30332903 MS.gene85887:CDS 60.0%
!! TGGTTGGTGGTGGTGAAGGG+GGG - chr5.3:30332733-30332752 MS.gene85887:CDS 60.0%
!! CGCCGGTTCCATGGTGTCTC+CGG - chr5.3:30332893-30332912 MS.gene85887:CDS 65.0%
!! GCGGTGGTTGGTGGTGGTGA+AGG - chr5.3:30332729-30332748 MS.gene85887:CDS 65.0%
ACACCGGTGGTTGCCGCTGC+CGG + chr5.3:30332915-30332934 None:intergenic 70.0%
TCTCCGGCAGCGGCAACCAC+CGG - chr5.3:30332909-30332928 MS.gene85887:CDS 70.0%
TGCCGCTGCCGGAGACACCA+TGG + chr5.3:30332904-30332923 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 30332696 30336561 30332696 ID=MS.gene85887
chr5.3 mRNA 30332696 30336561 30332696 ID=MS.gene85887.t1;Parent=MS.gene85887
chr5.3 exon 30336289 30336561 30336289 ID=MS.gene85887.t1.exon1;Parent=MS.gene85887.t1
chr5.3 CDS 30336289 30336561 30336289 ID=cds.MS.gene85887.t1;Parent=MS.gene85887.t1
chr5.3 exon 30333628 30334217 30333628 ID=MS.gene85887.t1.exon2;Parent=MS.gene85887.t1
chr5.3 CDS 30333628 30334217 30333628 ID=cds.MS.gene85887.t1;Parent=MS.gene85887.t1
chr5.3 exon 30333235 30333393 30333235 ID=MS.gene85887.t1.exon3;Parent=MS.gene85887.t1
chr5.3 CDS 30333235 30333393 30333235 ID=cds.MS.gene85887.t1;Parent=MS.gene85887.t1
chr5.3 exon 30332696 30332978 30332696 ID=MS.gene85887.t1.exon4;Parent=MS.gene85887.t1
chr5.3 CDS 30332696 30332978 30332696 ID=cds.MS.gene85887.t1;Parent=MS.gene85887.t1
Gene Sequence

>MS.gene85887

ATGGACCGACCACCGTGGAAGGAAGAAGAAGAAGCGGTGGTTGGTGGTGGTGAAGGGGGGCCACCACAGCGACCCACCTTAACTCTTCCGCCACGTACGGACGCACTTTTCACCGGTGGTTTTAGCCCTGGTCCTATGACTCTTCTCTCTAACTTATTTGCTGATGGTGATGACGGCAAGTCCTTCTCTCAGCTTCTCGCCGGTTCCATGGTGTCTCCGGCAGCGGCAACCACCGGTGTGCTTGATTCATCTGGCTTCTTTCCACATCCTCAGGTGAAAATCCTTCTTTATGTATATAGCTTATGCTTATTGAATTGCACTTATATGATATGATATGATATGATATGATATTACCACTGTTATATATAAGTGTTAATGTATAAAGTTAATTTATTTAAGGGTCATGTTAACTTGTGCCACATGTTAAGCAACCCAAAAATGGAAACATTTTCTTAAATTTTGTGCATTCAATTATTAAAAAGTAAAAAAGTTAAAGTCAAATACATTAATTACAATAGAATATTTCTATTTTGAATCATTAACTTGTGTCTTGAGGGCACAAGTTAACATTTCTCTTTATTTAATATAAGATACTTTCTTGGTGCATTATATTATGTGGAGAACTGTCTCGTGTCCTTTGCAGTAGGCTCATACCAATTGTGTTTGATCCTTTTAACTTTCTAGCGACGGAGGTTGTTGACTTTTTAAAAGAATTTAAATGGTATGTATAGGACCTAGTATGTTGTGTTTAAGAGTATTGATTTTGCGATCCAAAAAAGGTTAGTGCAGTGCAAATTGTTCTCCGTTTGCCCTTCATTTCTATGTAATTTGTTCTTTTTTTTCAAATTCAATTTAAGACTATACACTTAAAAGTTAAGCAAGAGATATACCATATATTTTCTAAAAAGAAAATTGTTCAAAATTCTAATAACAATCAGTGTCGTCCCATGTAAGTACAAGTTCATAGTATTACTTGTCCTCATTTGATATAGTGATCCAGTAGGAGTCAGTTTGACCAAAAACAAGGAAAACGAATATTAGTGCTCAAAACTCAACTTATATACTTGTTTTTTCTTAAATATTTTTGTTCAATCGACACCAATCAAATCATTTTTTAGCCGTTTTGAGGTAGAGGACCTTGGAATTCTACATAAAGGTGATAAGCATCGATTCACCATAGACCACGTCAATAAAACAATATCTGAAATACAACTTGGTAAAGGCTCTTAAATCTGGATACTAGACTTGCAAGAGTGTGATCAACCACATTTACTTGTCTCTTCGTAAATTTCACCGTGAAGTTTGGTTCAAGAATTAAAATATTCCTACACTTTTGGATAAAATTACCCAAATTTAGAAATATTACTATCATTTTTCATTACCAAACACACTAGAACCACTGTTTTTGCATCTGTTTCAAAGGCAACACACTGGAGACCCAAATGTTTTTCCCACAGTAAAGCTTGGAAGAGGTCCACTTTTAGATAATCTCTTTTTTTTTTTTTTTTTGACAAGCCACTTTAGATAATCTTGTCAACAAAGATAAATGTAAACTGCAATATGAAAAGAATCTTGAAATAACTGAGTTTTTTAAACAATTTCACATATAAGTTGACAAAATTGCTTCTACATCTTCATTTTTTCAAAGCTCTTTTATTTAATTTGTTACCTATAGCTTATAAGAATTTCGTTTTGAGTGAAAATCATTGATTATTTTAATCATAAGTTAGAAACTAATTCAAACTAGGCTTCACTCAAGTGAGTATCATCTAAAAGTCAATAGTCCTCTCTTTTAAGGGGGTGACCGTACATTGTTTATATACAAACTTTCCTTGATAATGCCTCAAATACAAACTTTTCTGCACTCCAATGCCTTTTTTTCCCTTTATCATGAAACAGGCAGGAAAATCTTTCAGTGAATCTTAGTACCGTAGCCTACATAGTTTAGAACTATGCAGCATGAACGCTCCTGAAATTAGACGTGTCTCTGTGTCCAAGTGCATTGGTGTCTTGATAGGATAGATGTAAGAGTGAAAGTGTCATATATGCTCTATTTAGGCCCTTACATTATGCTAAGTAAAGTCTCAAACTCTTGGATATTAACTACTAATTAATGTTGATGCAGACTACTAATGATGGTTATTCAAGTTTACTCCTTACATTATTTAACATATATTTTTACTGTGAAATTCAACTACGCAAAACAACTAATATATAGTTAATACTTAACATGATTATACTTGAGGATGTATAGTTACTACTTCCAAGATAGTGAGGATATATAGATTATAGAAAGCATAGTTATGAAATGAATTTGACACACAATATCCACCATATGATGTAGGTATCCTTTGGAATGACACAGCAGCAACCACTGACACAGGTCTCGGCTCACGAAGGACAATCCAACAGTACTAATATGCATAACCAAGTCGAACATTTATCATCTGTACCAACATCCACCGATCATGCTCCTCTCTCCGAACAAAGGTTGCAGCCTTCTTCGTTGAATGTTGATAAGCCTGCCGATGATGGCTACAATTGGAGGAAATATGGACAGAAACAGGTGAAAGGTAGCGAGTTTCCTCGAAGTTATTACAAGTGCACGCATCCTAACTGTCCTGTCAAGAAAAAGGTTGAGCGTTCGCTTGCTGGTCATATAACCGCAATTATTTATAAAGGAGAGCACAATCATCAACTCCCGAATCCTAATAAGCGATCAAAAGACACTGTAACTTCAAATGAAAATTCAAATAGGCAAGGGAGTGCTGATTCAACTTATCAACGGATGACTTCAAACTCAATGTCTAAGATGGACCCTGAATCTAGTCAAGCAACAGGCGAACATCTATCTGGAACGAGTGATAGTGAGGATGTAGGTGATCGTGAAACAGAAGTGGATGAGAAAAGAATTGAGCCCGACTCCAAAAGGAGGTAAATTTTCGTAAAGATATTTCCGATATATGTCAAAGTTGTAAATAGGATACAAACACTAATTCGTTTATCTAGACTTTTCTAAACCCAATGCACCTGATTAATGAACTAAATACAATTATTAAAAATAATTACAAAGATTCAGTATTTACAACATTTTTATGGTACATAAATTTGTTCATACCGAGTAATCCTTTGCCTTTATGTTGTCTTGTTATTGTTGTAATTCTGCAGACATACAGAAGTCACAGTCTCAAATCCAACAACTTCACATAGTACTGTCACAGAGCCTAAAATCATCGTGCAAACTACCAGTGAAGTTGATCTCTTAGATGATGGTTATAGATGGCGAAAATATGGACAGAAAGTTGTTAAAGGAAATCCTTATCCTAGGTGATATGCTTCTCCTCCACACTTTAATTTCACCTATTGTGAACTATTCGTGAATGTTGTGGACCTCGTTAAATTTGGCTTATTTAAACTTATCTAACATTTGCTTAGACATTTAATTTGACAATTGATTCCAACTTTTCATGTTCATCGATTGATTTTGCTTATAGTTTTTACGGATATTTTTCCCTAATAGTGTGTCTCATTTATCTTTTCTTGTCTTGAAAAACTTATTAATGTTTTCTTACATAATGTTTAGGAGCTATTACAAATGTACAACACCGAGTTGTAACGTTCGAAAGCATGTAGAGAGAGCATCGACAGATCCTAAAGCAGTCATAACAACATATGAAGGAAAACATAACCATGATGTTCCAGCAGCTAAGACTAATAGCCACACTATTGCCAACAATAATGCTTCACAGTTAAAATCGCAAAATACCATTTCTGAGAAGCCTAGTTTTGGTAGCATTGGTATTGGCGGGGGCAATCAGCAACAACCTGTTGCTCGTCTAAGGCTGAAGGAAGAGCAGATAACTTAA
Protein sequence

>MS.gene85887.t1

MDRPPWKEEEEAVVGGGEGGPPQRPTLTLPPRTDALFTGGFSPGPMTLLSNLFADGDDGKSFSQLLAGSMVSPAAATTGVLDSSGFFPHPQVSFGMTQQQPLTQVSAHEGQSNSTNMHNQVEHLSSVPTSTDHAPLSEQRLQPSSLNVDKPADDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCPVKKKVERSLAGHITAIIYKGEHNHQLPNPNKRSKDTVTSNENSNRQGSADSTYQRMTSNSMSKMDPESSQATGEHLSGTSDSEDVGDRETEVDEKRIEPDSKRRHTEVTVSNPTTSHSTVTEPKIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPSCNVRKHVERASTDPKAVITTYEGKHNHDVPAAKTNSHTIANNNASQLKSQNTISEKPSFGSIGIGGGNQQQPVARLRLKEEQIT