AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene85939

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85939.t1 MTR_2g104560 92.174 230 15 3 6 234 2 229 2.24e-152 423
MS.gene85939.t1 MTR_2g104550 46.798 203 93 3 37 231 118 313 1.37e-51 170
MS.gene85939.t1 MTR_8g009020 46.231 199 94 3 45 233 131 326 6.18e-51 169
MS.gene85939.t1 MTR_4g009540 47.692 195 86 3 47 230 142 331 4.63e-50 166
MS.gene85939.t1 MTR_4g009110 47.396 192 88 3 47 230 164 350 6.60e-48 161
MS.gene85939.t1 MTR_4g009540 49.425 174 72 3 47 209 142 310 6.66e-44 150
MS.gene85939.t1 MTR_8g009010 40.625 224 90 4 9 225 80 267 1.25e-43 149
MS.gene85939.t1 MTR_2g104490 45.128 195 95 3 37 226 117 304 1.89e-43 149
MS.gene85939.t1 MTR_5g014600 43.316 187 85 5 56 225 148 330 1.37e-41 144
MS.gene85939.t1 MTR_2g104590 43.056 216 91 10 18 225 28 219 2.40e-41 141
MS.gene85939.t1 MTR_5g014520 42.553 188 94 4 50 230 150 330 9.34e-41 142
MS.gene85939.t1 MTR_2g104500 39.535 215 122 4 18 230 64 272 1.50e-40 140
MS.gene85939.t1 MTR_2g010450 43.258 178 90 4 54 225 174 346 4.32e-40 141
MS.gene85939.t1 MTR_2g104530 42.268 194 104 4 35 226 83 270 5.04e-40 139
MS.gene85939.t1 MTR_0250s0040 37.768 233 118 8 16 231 40 262 5.49e-39 136
MS.gene85939.t1 MTR_5g014640 41.304 184 101 4 48 229 145 323 5.54e-39 137
MS.gene85939.t1 MTR_0246s0020 41.667 204 101 7 38 231 181 376 7.96e-39 138
MS.gene85939.t1 MTR_7g080780 45.745 188 92 4 47 233 141 319 1.97e-38 136
MS.gene85939.t1 MTR_7g080780 45.745 188 92 4 47 233 154 332 3.29e-38 135
MS.gene85939.t1 MTR_2g104490 44.944 178 86 3 37 209 117 287 1.14e-37 133
MS.gene85939.t1 MTR_4g092700 40.449 178 90 4 56 225 157 326 2.79e-37 133
MS.gene85939.t1 MTR_2g104650 43.541 209 93 6 31 225 67 264 7.75e-37 130
MS.gene85939.t1 MTR_0011s0260 37.288 177 109 2 56 231 182 357 2.54e-36 131
MS.gene85939.t1 MTR_8g069740 42.439 205 93 5 18 208 72 265 3.99e-36 129
MS.gene85939.t1 MTR_6g047570 39.109 202 114 4 34 231 137 333 9.65e-36 129
MS.gene85939.t1 MTR_4g097940 39.785 186 102 5 50 231 148 327 1.87e-35 128
MS.gene85939.t1 MTR_0011s0210 37.288 177 109 2 56 231 182 357 3.53e-35 128
MS.gene85939.t1 MTR_4g067010 36.082 194 119 2 38 231 130 318 5.31e-35 127
MS.gene85939.t1 MTR_4g066460 39.894 188 108 2 44 231 144 326 3.42e-34 125
MS.gene85939.t1 MTR_0246s0050 34.419 215 116 4 35 231 111 318 5.05e-34 124
MS.gene85939.t1 MTR_4g098035 34.419 215 116 4 35 231 132 339 6.83e-34 124
MS.gene85939.t1 MTR_4g097920 37.968 187 104 5 50 231 133 312 9.46e-34 123
MS.gene85939.t1 MTR_4g097920 37.968 187 104 5 50 231 148 327 1.59e-33 123
MS.gene85939.t1 MTR_4g066380 36.181 199 99 4 44 231 142 323 1.12e-32 121
MS.gene85939.t1 MTR_0246s0020 40.761 184 91 7 38 211 181 356 3.61e-32 120
MS.gene85939.t1 MTR_5g014560 36.224 196 111 4 42 230 116 304 6.77e-32 118
MS.gene85939.t1 MTR_4g097950 40.212 189 90 4 58 231 71 251 1.38e-29 111
MS.gene85939.t1 MTR_4g009510 37.725 167 92 4 60 225 45 200 7.32e-26 100
MS.gene85939.t1 MTR_7g451650 30.667 225 123 5 1 225 1 192 2.00e-25 99.0
MS.gene85939.t1 MTR_4g009420 30.131 229 119 7 1 225 1 192 4.11e-25 98.2
MS.gene85939.t1 MTR_7g050350 36.429 140 79 2 86 225 1 130 1.18e-22 90.1
MS.gene85939.t1 MTR_7g451650 36.429 140 79 2 86 225 1 130 1.18e-22 90.1
MS.gene85939.t1 MTR_7g451650 30.986 213 114 5 1 213 1 180 9.68e-22 89.4
MS.gene85939.t1 MTR_4g009420 30.415 217 110 7 1 213 1 180 3.96e-21 87.8
MS.gene85939.t1 MTR_6g047550 49.367 79 39 1 34 112 151 228 1.34e-17 79.7
MS.gene85939.t1 MTR_5g014550 36.434 129 68 4 87 208 54 175 7.60e-14 68.2
MS.gene85939.t1 MTR_8g027495 23.563 174 124 3 58 231 459 623 5.53e-13 68.2
MS.gene85939.t1 MTR_1g072320 28.777 139 91 2 58 188 471 609 5.84e-13 68.2
MS.gene85939.t1 MTR_7g117670 25.294 170 118 4 58 227 403 563 7.20e-13 67.8
MS.gene85939.t1 MTR_3g030700 25.000 224 153 6 15 233 160 373 1.14e-11 63.9
MS.gene85939.t1 MTR_2g038040 22.581 217 142 4 30 233 34 237 1.31e-11 62.8
MS.gene85939.t1 MTR_5g030430 29.787 188 107 8 58 228 494 673 3.32e-11 62.8
MS.gene85939.t1 MTR_8g098275 47.273 55 29 0 58 112 245 299 7.69e-11 61.6
MS.gene85939.t1 MTR_8g098275 47.273 55 29 0 58 112 309 363 9.50e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene85939.t1 AT4G37850 40.306 196 102 5 38 225 133 321 5.56e-35 127
MS.gene85939.t1 AT4G37850 40.306 196 102 5 38 225 133 321 5.56e-35 127
MS.gene85939.t1 AT2G22760 37.634 186 99 5 40 217 106 282 1.26e-34 125
MS.gene85939.t1 AT2G22760 38.202 178 93 5 40 209 106 274 3.18e-32 119
MS.gene85939.t1 AT2G22770 38.542 192 91 5 55 225 130 315 1.92e-31 117
MS.gene85939.t1 AT2G22750 37.688 199 96 5 49 231 118 304 2.01e-29 112
MS.gene85939.t1 AT2G22750 37.688 199 96 5 49 231 142 328 3.04e-29 112
MS.gene85939.t1 AT2G22750 37.688 199 96 5 49 231 146 332 3.69e-29 112
MS.gene85939.t1 AT2G22750 37.688 199 95 6 49 231 118 303 5.84e-28 108
MS.gene85939.t1 AT2G22750 37.688 199 95 6 49 231 146 331 9.34e-28 108
MS.gene85939.t1 AT4G09820 32.394 142 76 3 43 184 349 470 1.51e-15 75.5
MS.gene85939.t1 AT5G57150 25.822 213 125 7 1 197 9 204 2.09e-13 67.4
MS.gene85939.t1 AT5G57150 25.822 213 125 7 1 197 9 204 2.34e-13 67.4
MS.gene85939.t1 AT4G29930 24.554 224 137 7 3 218 10 209 2.96e-13 67.0
MS.gene85939.t1 AT5G57150 25.822 213 125 7 1 197 9 204 4.32e-13 67.4
MS.gene85939.t1 AT5G57150 25.217 230 140 7 1 215 9 221 5.34e-13 66.6
MS.gene85939.t1 AT4G29930 23.394 218 144 5 3 218 10 206 6.09e-13 66.2
MS.gene85939.t1 AT5G57150 25.943 212 125 7 1 197 9 203 1.48e-12 65.1
MS.gene85939.t1 AT5G46760 25.824 182 104 3 58 213 416 592 1.60e-12 66.6
MS.gene85939.t1 AT1G63650 29.412 153 86 4 54 186 402 552 3.10e-12 65.9
MS.gene85939.t1 AT1G63650 29.412 153 86 4 54 186 402 552 3.10e-12 65.9
MS.gene85939.t1 AT1G63650 29.412 153 86 4 54 186 402 552 3.10e-12 65.9
MS.gene85939.t1 AT5G41315 26.752 157 90 3 54 186 446 601 3.46e-12 65.9
MS.gene85939.t1 AT5G41315 26.752 157 90 3 54 186 443 598 3.55e-12 65.9
MS.gene85939.t1 AT5G41315 26.752 157 90 3 54 186 438 593 3.68e-12 65.9
MS.gene85939.t1 AT4G29930 23.469 196 128 4 3 196 10 185 4.62e-12 63.9
MS.gene85939.t1 AT1G12860 24.713 174 123 3 58 224 268 440 6.70e-12 64.7
MS.gene85939.t1 AT1G01260 27.586 174 100 5 54 227 430 577 7.81e-12 64.7
MS.gene85939.t1 AT1G01260 27.586 174 100 5 54 227 430 577 7.81e-12 64.7
MS.gene85939.t1 AT1G01260 27.586 174 100 5 54 227 430 577 7.81e-12 64.7
MS.gene85939.t1 AT2G46510 39.394 66 40 0 58 123 396 461 8.45e-12 64.7
MS.gene85939.t1 AT4G17880 28.415 183 105 7 58 228 417 585 3.39e-11 62.8
MS.gene85939.t1 AT4G29930 23.013 239 148 8 3 218 10 235 3.51e-11 61.6
MS.gene85939.t1 AT1G12860 26.144 153 105 3 58 203 268 419 5.30e-11 62.0
MS.gene85939.t1 AT1G32640 25.000 140 98 2 58 193 453 589 6.29e-11 62.0

Find 47 sgRNAs with CRISPR-Local

Find 105 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATCCACGTAATGATAATT+TGG 0.206550 2.1:-1257159 MS.gene85939:CDS
ATGCCAATGGCCTCTACTTC+AGG 0.262770 2.1:+1257116 None:intergenic
CCATGTGTAGCAGCATTATT+AGG 0.265823 2.1:+1258851 None:intergenic
GGAGAATTGGTTCTCTAATA+TGG 0.295421 2.1:-1259067 MS.gene85939:intron
CAGAAGCATCCAACAATAAT+AGG 0.297499 2.1:-1258893 MS.gene85939:CDS
ACATAATGTCAGAGAGAAAA+AGG 0.300304 2.1:-1258787 MS.gene85939:CDS
GAACAATGTCCTATTATTGT+TGG 0.353321 2.1:+1258884 None:intergenic
ATAGACAAGGTTTCTGTACT+TGG 0.374394 2.1:-1257299 MS.gene85939:CDS
TGGAGAATTGGTGGGAGAAT+TGG 0.381146 2.1:-1259080 MS.gene85939:CDS
ACCAGTAGTGTGCTTCCATT+TGG 0.382968 2.1:-1256987 MS.gene85939:CDS
GTTCAAACTATTGTCAATGC+TGG 0.402081 2.1:-1257033 MS.gene85939:CDS
CTATACCTAACATGGAGAAT+TGG 0.414546 2.1:-1259092 None:intergenic
AGAGAGATTCATAGCACTTT+CGG 0.417342 2.1:-1258750 MS.gene85939:CDS
GGCAGATGGGTGAGGAATAC+AGG 0.417383 2.1:-1256848 MS.gene85939:intron
ATTGATGACAAAGTTGAAAC+AGG 0.417457 2.1:-1256811 MS.gene85939:CDS
TTCAGGGAGGAGCACATGAT+TGG 0.449356 2.1:+1257133 None:intergenic
AAACATTACCTTAGCAATGA+TGG 0.455229 2.1:+1256944 None:intergenic
CTACACATGGAAAGAATAAG+AGG 0.462322 2.1:-1258838 MS.gene85939:CDS
TGTTGGATGCTTCTGATTGA+AGG 0.471742 2.1:+1258901 None:intergenic
TGCCAATGGCCTCTACTTCA+GGG 0.476384 2.1:+1257117 None:intergenic
CTTCTCTGATTCTATGCCAA+TGG 0.479471 2.1:+1257103 None:intergenic
TCCAAATGGAAGCACACTAC+TGG 0.493687 2.1:+1256986 None:intergenic
TAAAGAACGCATATCAATGC+TGG 0.499426 2.1:-1257249 MS.gene85939:CDS
AGCAATGATGGTAATGTTGA+GGG 0.515073 2.1:+1256956 None:intergenic
CCTAATAATGCTGCTACACA+TGG 0.515165 2.1:-1258851 MS.gene85939:CDS
TACCTAACATGGAGAATTGG+TGG 0.525198 2.1:-1259089 None:intergenic
TATGATACCCGGCTTGAAGA+AGG 0.532421 2.1:-1258726 MS.gene85939:intron
CTCCCTGAAGTAGAGGCCAT+TGG 0.547128 2.1:-1257119 MS.gene85939:CDS
GCACTTTCGGCTATGATACC+CGG 0.547609 2.1:-1258737 MS.gene85939:CDS
GGAACTGACCTTCTTCAAGC+CGG 0.556400 2.1:+1258718 None:intergenic
TAGCAATGATGGTAATGTTG+AGG 0.557198 2.1:+1256955 None:intergenic
TAAGAGGGTGAGAAGCTCAT+GGG 0.563045 2.1:-1258822 MS.gene85939:CDS
CAACATTACCATCATTGCTA+AGG 0.570598 2.1:-1256952 MS.gene85939:intron
AAATGGAAGCACACTACTGG+TGG 0.570834 2.1:+1256989 None:intergenic
ATAAGAGGGTGAGAAGCTCA+TGG 0.579940 2.1:-1258823 MS.gene85939:CDS
GAACTGACCTTCTTCAAGCC+GGG 0.582458 2.1:+1258719 None:intergenic
ACCTAACATGGAGAATTGGT+GGG 0.590580 2.1:-1259088 None:intergenic
CACTACTGGTGGAAACATAG+AGG 0.596342 2.1:+1257000 None:intergenic
TGTGCTCCTCCCTGAAGTAG+AGG 0.602550 2.1:-1257126 MS.gene85939:CDS
ATCAACTGTGAGAAACATGA+AGG 0.603620 2.1:-1257062 MS.gene85939:CDS
AGAAGCTCATGGGAGATACA+AGG 0.603853 2.1:-1258812 MS.gene85939:CDS
GAATCCAAATTATCATTACG+TGG 0.646914 2.1:+1257155 None:intergenic
CATTGGCATAGAATCAGAGA+AGG 0.647651 2.1:-1257102 MS.gene85939:CDS
TACACATGGAAAGAATAAGA+GGG 0.651853 2.1:-1258837 MS.gene85939:CDS
TGGAGCAACAATGTTATGAG+AGG 0.657981 2.1:-1257229 MS.gene85939:CDS
TTTACTTGTATAGATAGACA+AGG 0.695353 2.1:-1257312 MS.gene85939:intron
CAATGGCCTCTACTTCAGGG+AGG 0.745278 2.1:+1257120 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAATAATAAATTAACAC+AGG - chr2.1:1258166-1258185 MS.gene85939:intron 10.0%
!! GAAAAAAATTAAAATTGTAT+TGG - chr2.1:1257489-1257508 MS.gene85939:intron 10.0%
!!! AAATTTTTTAATAGAGATTA+TGG + chr2.1:1258682-1258701 None:intergenic 10.0%
!!! CTTTTTTTTACAATATTTAA+TGG - chr2.1:1257597-1257616 MS.gene85939:intron 10.0%
!! TACAATATAATTGAATTACT+TGG + chr2.1:1257653-1257672 None:intergenic 15.0%
!! TTGATAAAATGTTAATTACA+TGG - chr2.1:1258986-1259005 MS.gene85939:intron 15.0%
!!! ATTAACTTTTTATAATGGAT+AGG - chr2.1:1257261-1257280 MS.gene85939:CDS 15.0%
!! AAAAAATCTATAGGATATGA+AGG - chr2.1:1256930-1256949 MS.gene85939:intron 20.0%
!! AAAAATCTATAGGATATGAA+GGG - chr2.1:1256931-1256950 MS.gene85939:intron 20.0%
!! AAAAGTTTGAGTATTTATTG+AGG - chr2.1:1257454-1257473 MS.gene85939:intron 20.0%
!! AAAGTTTGAGTATTTATTGA+GGG - chr2.1:1257455-1257474 MS.gene85939:intron 20.0%
!! AAATAAAGAGTGAGAATAAA+AGG - chr2.1:1258364-1258383 MS.gene85939:intron 20.0%
!! AATAAAGAGTGAGAATAAAA+GGG - chr2.1:1258365-1258384 MS.gene85939:intron 20.0%
!! ATTAATTTAGTTGAGATACA+TGG + chr2.1:1257889-1257908 None:intergenic 20.0%
!! GACATAAAATAAATTAACAC+AGG - chr2.1:1258096-1258115 MS.gene85939:intron 20.0%
!! TTGTAAGATGTTTAAATAGT+GGG + chr2.1:1257696-1257715 None:intergenic 20.0%
!! TTTGTAAGATGTTTAAATAG+TGG + chr2.1:1257697-1257716 None:intergenic 20.0%
!!! ATAATTAAGCTTGTTAAGTT+TGG + chr2.1:1258032-1258051 None:intergenic 20.0%
!!! TTAATTACATGGATTTTATG+TGG - chr2.1:1258997-1259016 MS.gene85939:intron 20.0%
!!! TTCAAGTATTTTTGTTGATA+AGG - chr2.1:1258416-1258435 MS.gene85939:intron 20.0%
!!! TTTTTACACTCTTAAGTTTT+AGG - chr2.1:1258484-1258503 MS.gene85939:intron 20.0%
! AAGCATGGAAATACTAAATA+TGG - chr2.1:1257217-1257236 MS.gene85939:CDS 25.0%
! AATACATTGATAAGCCAAAA+AGG - chr2.1:1257935-1257954 MS.gene85939:intron 25.0%
! ATATATTGAAGAAGAATTGC+AGG + chr2.1:1257172-1257191 None:intergenic 25.0%
! TACAAGATTAATTCAGTTCA+TGG - chr2.1:1257767-1257786 MS.gene85939:intron 25.0%
! TGTAAGATGTTTAAATAGTG+GGG + chr2.1:1257695-1257714 None:intergenic 25.0%
! TTGTATTTAGTAGTGATACA+TGG - chr2.1:1257668-1257687 MS.gene85939:intron 25.0%
! TTTACTTGTATAGATAGACA+AGG - chr2.1:1258554-1258573 MS.gene85939:intron 25.0%
!! AGATTTTCTTTGTTCCTTTT+TGG + chr2.1:1257952-1257971 None:intergenic 25.0%
!! CTAAATATGGATTAAACATG+AGG - chr2.1:1257230-1257249 MS.gene85939:CDS 25.0%
!! TTGGCTTATCAATGTATTTT+GGG + chr2.1:1257933-1257952 None:intergenic 25.0%
!!! CTATAGATTTTTTTGACAGA+GGG + chr2.1:1256923-1256942 None:intergenic 25.0%
!!! TGTCTTGTTCTTTTAAAGTA+AGG + chr2.1:1257400-1257419 None:intergenic 25.0%
!!! TTTGGCTTATCAATGTATTT+TGG + chr2.1:1257934-1257953 None:intergenic 25.0%
AAACATTACCTTAGCAATGA+TGG + chr2.1:1258925-1258944 None:intergenic 30.0%
ACATAATGTCAGAGAGAAAA+AGG - chr2.1:1257079-1257098 MS.gene85939:CDS 30.0%
ATTATGACATGTGACTTATG+AGG - chr2.1:1258453-1258472 MS.gene85939:intron 30.0%
CCTCTGTCAAAAAAATCTAT+AGG - chr2.1:1256921-1256940 MS.gene85939:intron 30.0%
GAACAATGTCCTATTATTGT+TGG + chr2.1:1256985-1257004 None:intergenic 30.0%
GAATCCAAATTATCATTACG+TGG + chr2.1:1258714-1258733 None:intergenic 30.0%
GTAAATGTGAGTAACAAAGA+AGG - chr2.1:1258074-1258093 MS.gene85939:intron 30.0%
GTATTTATTGAGGGTAAAGT+TGG - chr2.1:1257464-1257483 MS.gene85939:intron 30.0%
TACACATGGAAAGAATAAGA+GGG - chr2.1:1257029-1257048 MS.gene85939:CDS 30.0%
TCATCCACGTAATGATAATT+TGG - chr2.1:1258707-1258726 MS.gene85939:intron 30.0%
TTTGTTACTCACATTTACAG+AGG + chr2.1:1258072-1258091 None:intergenic 30.0%
! ATTGATGACAAAGTTGAAAC+AGG - chr2.1:1259055-1259074 MS.gene85939:intron 30.0%
! TAAGTTTGAGTTCTTATGCT+TGG + chr2.1:1258006-1258025 None:intergenic 30.0%
!! AAGTGACACTCATTTTGAAA+CGG - chr2.1:1257550-1257569 MS.gene85939:intron 30.0%
!!! CCTATAGATTTTTTTGACAG+AGG + chr2.1:1256924-1256943 None:intergenic 30.0%
!!! GTTTTTTGTAGATCAAAGCA+TGG - chr2.1:1257202-1257221 MS.gene85939:CDS 30.0%
!!! TTGAGGGTATTTTTTCCAAA+TGG + chr2.1:1258897-1258916 None:intergenic 30.0%
AGAGAGATTCATAGCACTTT+CGG - chr2.1:1257116-1257135 MS.gene85939:CDS 35.0%
ATAGACAAGGTTTCTGTACT+TGG - chr2.1:1258567-1258586 MS.gene85939:intron 35.0%
ATCAACTGTGAGAAACATGA+AGG - chr2.1:1258804-1258823 MS.gene85939:CDS 35.0%
ATCAATTTCGAGATGAAGCA+AGG - chr2.1:1257907-1257926 MS.gene85939:intron 35.0%
CAACATTACCATCATTGCTA+AGG - chr2.1:1258914-1258933 MS.gene85939:CDS 35.0%
CTACACATGGAAAGAATAAG+AGG - chr2.1:1257028-1257047 MS.gene85939:CDS 35.0%
GAGAAAAAGGAGACAAGAAA+TGG - chr2.1:1257092-1257111 MS.gene85939:CDS 35.0%
GTTCAAACTATTGTCAATGC+TGG - chr2.1:1258833-1258852 MS.gene85939:CDS 35.0%
TAAAGAACGCATATCAATGC+TGG - chr2.1:1258617-1258636 MS.gene85939:intron 35.0%
TCAGTTCATGGCAAAAATTG+TGG - chr2.1:1257779-1257798 MS.gene85939:intron 35.0%
TCGCTTTAGTCAATTGCATA+CGG - chr2.1:1257322-1257341 MS.gene85939:intron 35.0%
TTAACACAGGTGATTTCACA+TGG - chr2.1:1258109-1258128 MS.gene85939:intron 35.0%
! AGCAATGATGGTAATGTTGA+GGG + chr2.1:1258913-1258932 None:intergenic 35.0%
! AGTCAATTGCATACGGATTA+AGG - chr2.1:1257329-1257348 MS.gene85939:intron 35.0%
! ATGGATTTTATGTGGCAGAT+GGG - chr2.1:1259005-1259024 MS.gene85939:intron 35.0%
! GGAGAATTGGTTCTCTAATA+TGG - chr2.1:1256799-1256818 MS.gene85939:CDS 35.0%
! TAGCAATGATGGTAATGTTG+AGG + chr2.1:1258914-1258933 None:intergenic 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + chr2.1:1257308-1257327 None:intergenic 35.0%
!! CAGAAGCATCCAACAATAAT+AGG - chr2.1:1256973-1256992 MS.gene85939:CDS 35.0%
CATTGGCATAGAATCAGAGA+AGG - chr2.1:1258764-1258783 MS.gene85939:CDS 40.0%
CCATGTGTAGCAGCATTATT+AGG + chr2.1:1257018-1257037 None:intergenic 40.0%
CCTAATAATGCTGCTACACA+TGG - chr2.1:1257015-1257034 MS.gene85939:CDS 40.0%
CTTCTCTGATTCTATGCCAA+TGG + chr2.1:1258766-1258785 None:intergenic 40.0%
GTTACTCACATTTACAGAGG+AGG + chr2.1:1258069-1258088 None:intergenic 40.0%
TGGAGCAACAATGTTATGAG+AGG - chr2.1:1258637-1258656 MS.gene85939:intron 40.0%
TGTTGGATGCTTCTGATTGA+AGG + chr2.1:1256968-1256987 None:intergenic 40.0%
! CATGGATTTTATGTGGCAGA+TGG - chr2.1:1259004-1259023 MS.gene85939:intron 40.0%
!!! ACGGAGGAGTACTATTTTAG+TGG - chr2.1:1257569-1257588 MS.gene85939:intron 40.0%
!!! TGACACTCATTTTGAAACGG+AGG - chr2.1:1257553-1257572 MS.gene85939:intron 40.0%
ACCAGTAGTGTGCTTCCATT+TGG - chr2.1:1258879-1258898 MS.gene85939:CDS 45.0%
AGAAGCTCATGGGAGATACA+AGG - chr2.1:1257054-1257073 MS.gene85939:CDS 45.0%
ATAAGAGGGTGAGAAGCTCA+TGG - chr2.1:1257043-1257062 MS.gene85939:CDS 45.0%
CACTACTGGTGGAAACATAG+AGG + chr2.1:1258869-1258888 None:intergenic 45.0%
GAGTTCTTATGCTTGGAGCT+TGG + chr2.1:1257999-1258018 None:intergenic 45.0%
TAAGAGGGTGAGAAGCTCAT+GGG - chr2.1:1257044-1257063 MS.gene85939:CDS 45.0%
TGGAGAATTGGTGGGAGAAT+TGG - chr2.1:1256786-1256805 MS.gene85939:CDS 45.0%
TTCTTATGCTTGGAGCTTGG+TGG + chr2.1:1257996-1258015 None:intergenic 45.0%
! AAATGGAAGCACACTACTGG+TGG + chr2.1:1258880-1258899 None:intergenic 45.0%
! TATGATACCCGGCTTGAAGA+AGG - chr2.1:1257140-1257159 MS.gene85939:CDS 45.0%
! TCCAAATGGAAGCACACTAC+TGG + chr2.1:1258883-1258902 None:intergenic 45.0%
! TTTTATGTGGCAGATGGGTG+AGG - chr2.1:1259010-1259029 MS.gene85939:intron 45.0%
!!! ATGAAATTATTTTTATAAAA+TGG + chr2.1:1256840-1256859 None:intergenic 5.0%
!!! ATTATATTAACTTTTTATAA+TGG - chr2.1:1257256-1257275 MS.gene85939:CDS 5.0%
ATGCCAATGGCCTCTACTTC+AGG + chr2.1:1258753-1258772 None:intergenic 50.0%
GAACTGACCTTCTTCAAGCC+GGG + chr2.1:1257150-1257169 None:intergenic 50.0%
GCACTTTCGGCTATGATACC+CGG - chr2.1:1257129-1257148 MS.gene85939:CDS 50.0%
GGAACTGACCTTCTTCAAGC+CGG + chr2.1:1257151-1257170 None:intergenic 50.0%
TGCCAATGGCCTCTACTTCA+GGG + chr2.1:1258752-1258771 None:intergenic 50.0%
! TTCAGGGAGGAGCACATGAT+TGG + chr2.1:1258736-1258755 None:intergenic 50.0%
CAATGGCCTCTACTTCAGGG+AGG + chr2.1:1258749-1258768 None:intergenic 55.0%
CTCCCTGAAGTAGAGGCCAT+TGG - chr2.1:1258747-1258766 MS.gene85939:CDS 55.0%
GGCAGATGGGTGAGGAATAC+AGG - chr2.1:1259018-1259037 MS.gene85939:intron 55.0%
TGTGCTCCTCCCTGAAGTAG+AGG - chr2.1:1258740-1258759 MS.gene85939:CDS 55.0%
! GCTTGGAGCTTGGTGGTCTC+AGG + chr2.1:1257989-1258008 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 1256785 1259103 1256785 ID=MS.gene85939
chr2.1 mRNA 1256785 1259103 1256785 ID=MS.gene85939.t1;Parent=MS.gene85939
chr2.1 exon 1259068 1259103 1259068 ID=MS.gene85939.t1.exon1;Parent=MS.gene85939.t1
chr2.1 CDS 1259068 1259103 1259068 ID=cds.MS.gene85939.t1;Parent=MS.gene85939.t1
chr2.1 exon 1258727 1258945 1258727 ID=MS.gene85939.t1.exon2;Parent=MS.gene85939.t1
chr2.1 CDS 1258727 1258945 1258727 ID=cds.MS.gene85939.t1;Parent=MS.gene85939.t1
chr2.1 exon 1256953 1257321 1256953 ID=MS.gene85939.t1.exon3;Parent=MS.gene85939.t1
chr2.1 CDS 1256953 1257321 1256953 ID=cds.MS.gene85939.t1;Parent=MS.gene85939.t1
chr2.1 exon 1256785 1256865 1256785 ID=MS.gene85939.t1.exon4;Parent=MS.gene85939.t1
chr2.1 CDS 1256785 1256865 1256785 ID=cds.MS.gene85939.t1;Parent=MS.gene85939.t1
Gene Sequence

>MS.gene85939

ATGGAGAATTGGTGGGAGAATTGGTTCTCTAATATGGTAATTAATTAACTAGCCATTTTATAAAAATAATTTCATTGTCAAGTTAATATCAATTTTGTCAAAGTATATGTATATGTTATGATAATATTTCTATTTCCCTCTGTCAAAAAAATCTATAGGATATGAAGGGTAGTGATAACTCCTTCAATCAGAAGCATCCAACAATAATAGGACATTGTTCTAATTCAGTGCCTAATAATGCTGCTACACATGGAAAGAATAAGAGGGTGAGAAGCTCATGGGAGATACAAGGTCACATAATGTCAGAGAGAAAAAGGAGACAAGAAATGGCAGAGAGATTCATAGCACTTTCGGCTATGATACCCGGCTTGAAGAAGGTCAGTTCCTGCAATTCTTCTTCAATATATGCAACATTCTGTTTTTTGTAGATCAAAGCATGGAAATACTAAATATGGATTAAACATGAGGTTTATTATATTAACTTTTTATAATGGATAGGTTTCTTTGTTCTATGCTCTCTCCGTTTCAAAATGAGTGTCGCTTTAGTCAATTGCATACGGATTAAGGAATGAAATAAAGTAGTCAAATGTCATAGCAATTTTACTAAAATAACCTTACTTTAAAAGAACAAGACAAACTTAAAGTTGTATTGAAAATTGTGTGAGAGAGAAAAGTTTGAGTATTTATTGAGGGTAAAGTTGGAAGAAAAAAATTAAAATTGTATTGGAAATGTAAAGTGACATTCATTTTGAAACAATTTTTTTTAAGTGACACTCATTTTGAAACGGAGGAGTACTATTTTAGTGGATATGCTTTTTTTTACAATATTTAATGGATATATGCTTAACAATGTAAAAATACTTTACCAAGTAATTCAATTATATTGTATTTAGTAGTGATACATGGACCCCACTATTTAAACATCTTACAAAATTTAATCAAAAAAAAAAAAATCTTACAAAATGTGATTAATTCAATTGAATACAAGATTAATTCAGTTCATGGCAAAAATTGTGGTTAATTCAATTTCAAGAATTAAACATGAATTTCAATGTGAACTATTTAATCAACTAAATTAATCACATTTTTGCATGTGAGTAACCATGTATCTCAACTAAATTAATCAATTTCGAGATGAAGCAAGGCCCAAAATACATTGATAAGCCAAAAAGGAACAAAGAAAATCTATTTTTAGTATAGTCCTGAGACCACCAAGCTCCAAGCATAAGAACTCAAACTTAAATCCAAACTTAACAAGCTTAATTATCAGCACGTTAATTTCCTCCTCTGTAAATGTGAGTAACAAAGAAGGACATAAAATAAATTAACACAGGTGATTTCACATGGTGATTTCTAAATTATGAAATATAATTTATATAAAATTAAATAATAAATTAACACAGGTGCAACAACAATTGAGATATTTATTGTCATGCAATGCTTTTTCACTCTAAGTTTTTTTTAAAAAGAATAAATTGAAACATTTAATTACTAACTAAAGTTAAATATAGTGATTTTGCATTTGTTTAATTTGAGAGAAATTGTCAATAAAAGAATATTTTTCTCTTGCATTTGTTTCAAATAAAGAGTGAGAATAAAAGGGAACGTATGATAGAAGAATGATGAAGATATTCAAGTATTTTTGTTGATAAGGTTTAGTAAATGTACATTATGACATGTGACTTATGAGGTGAGATAATTTTTACACTCTTAAGTTTTAGGTGAGATTCTTTATTGTGAGATTGATATATAACAATGTCATTAAATATTTTACTTGTATAGATAGACAAGGTTTCTGTACTTGGTGAAGCTATTAATTACGTGAAACAACTTAAAGAACGCATATCAATGCTGGAGCAACAATGTTATGAGAGGAATAAAAAAAGTAGCAAGTCCATAATCTCTATTAAAAAATTTCAATCTCATCCACGTAATGATAATTTGGATTCCAATCATGTGCTCCTCCCTGAAGTAGAGGCCATTGGCATAGAATCAGAGAAGGAACTAGTACTTATTAAAATCAACTGTGAGAAACATGAAGGCATTTTGTTCAAACTATTGTCAATGCTGGAAAATATGCACCTCTATGTTTCCACCAGTAGTGTGCTTCCATTTGGAAAAAATACCCTCAACATTACCATCATTGCTAAGGTAATGTTTTTATGTTTCAATTATGAATACTTGTTTGAAATTTTGAAGCATTGATAAAATGTTAATTACATGGATTTTATGTGGCAGATGGGTGAGGAATACAGGATAACAATAGAAGAATTGATGACAAAGTTGAAACAGGATGTTTTGAAGTTATATGACATGTAA
Protein sequence

>MS.gene85939.t1

MENWWENWFSNMDMKGSDNSFNQKHPTIIGHCSNSVPNNAATHGKNKRVRSSWEIQGHIMSERKRRQEMAERFIALSAMIPGLKKIDKVSVLGEAINYVKQLKERISMLEQQCYERNKKSSKSIISIKKFQSHPRNDNLDSNHVLLPEVEAIGIESEKELVLIKINCEKHEGILFKLLSMLENMHLYVSTSSVLPFGKNTLNITIIAKMGEEYRITIEELMTKLKQDVLKLYDM