Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86015.t1 | PNX86606.1 | 83 | 94 | 16 | 0 | 151 | 244 | 81 | 174 | 9.40E-41 | 177.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86015.t1 | P24923 | 90.3 | 31 | 3 | 0 | 9 | 39 | 130 | 160 | 5.3e-08 | 59.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86015.t1 | G7JBX1 | 78.4 | 102 | 22 | 0 | 143 | 244 | 67 | 168 | 6.8e-41 | 177.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054124 | MS.gene86015 | 0.808048 | 3.75E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86015.t1 | MTR_3g071470 | 78.431 | 102 | 22 | 0 | 143 | 244 | 67 | 168 | 1.55e-54 | 173 |
| MS.gene86015.t1 | MTR_5g014340 | 81.250 | 80 | 15 | 0 | 143 | 222 | 166 | 245 | 7.08e-40 | 138 |
| MS.gene86015.t1 | MTR_2g104470 | 70.455 | 44 | 13 | 0 | 90 | 133 | 63 | 106 | 2.62e-14 | 68.2 |
| MS.gene86015.t1 | MTR_4g017520 | 70.455 | 44 | 13 | 0 | 90 | 133 | 63 | 106 | 3.95e-14 | 69.7 |
| MS.gene86015.t1 | MTR_8g010370 | 70.455 | 44 | 13 | 0 | 90 | 133 | 215 | 258 | 6.51e-14 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86015.t1 | AT5G05500 | 49.057 | 106 | 51 | 1 | 131 | 236 | 70 | 172 | 2.61e-28 | 106 |
Find 44 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAATAAATGACTACAATT+TGG | 0.198176 | 8.2:+69589030 | MS.gene86015:CDS |
| TCAGTAAGGCTTGCAGATTT+TGG | 0.233753 | 8.2:+69588055 | MS.gene86015:CDS |
| TTTCCACCATCTCAGCATTT+TGG | 0.245751 | 8.2:+69589622 | MS.gene86015:intron |
| AACATCATGAAGAGTCTTAA+TGG | 0.253177 | 8.2:+69588868 | MS.gene86015:CDS |
| ACCATAGTTTCAACTTCTTC+AGG | 0.316823 | 8.2:-69589165 | None:intergenic |
| CTGGAATTTGAAGACATATA+TGG | 0.318108 | 8.2:+69589675 | MS.gene86015:CDS |
| CTTGCTTCGTGAAGCCTGTT+TGG | 0.325880 | 8.2:+69591417 | MS.gene86015:CDS |
| TTGACAATAACTTCATGTTC+AGG | 0.334670 | 8.2:-69589066 | None:intergenic |
| TTTGGATTGGCTAGGGCATT+TGG | 0.339542 | 8.2:+69588073 | MS.gene86015:CDS |
| GAAGAGTCTTAATGGTTATA+AGG | 0.381094 | 8.2:+69588876 | MS.gene86015:CDS |
| ACCTGAAGAAGTTGAAACTA+TGG | 0.384871 | 8.2:+69589164 | MS.gene86015:CDS |
| AATGTTAATTACGATTTGAA+TGG | 0.386727 | 8.2:+69591470 | MS.gene86015:CDS |
| TCCCTTGGCTTTCCATCCTC+CGG | 0.388544 | 8.2:+69591562 | MS.gene86015:CDS |
| TGACTACAATTTGGCTGACT+TGG | 0.405261 | 8.2:+69589039 | MS.gene86015:CDS |
| TATGAGTGGGTTGTGTTATG+AGG | 0.422892 | 8.2:+69589302 | MS.gene86015:CDS |
| TACCTCTATGCACAACTAGA+AGG | 0.432988 | 8.2:+69591353 | MS.gene86015:CDS |
| AAGTTATTGTCAAGTCAAAT+AGG | 0.442406 | 8.2:+69589076 | MS.gene86015:CDS |
| TAGTGAGTCTTTGAGAAATC+CGG | 0.443104 | 8.2:-69591581 | None:intergenic |
| ATCTTCCTTTGTTGTTGATG+TGG | 0.450559 | 8.2:+69589128 | MS.gene86015:CDS |
| CTTTCAAGAGGAGACCAAAC+AGG | 0.457911 | 8.2:-69591431 | None:intergenic |
| TATATATACAGCTGGTCCCT+TGG | 0.464740 | 8.2:+69591547 | MS.gene86015:CDS |
| TGAGGGCAACTTACATATCC+AGG | 0.488191 | 8.2:+69589320 | MS.gene86015:CDS |
| TGACAATAACTTCATGTTCA+GGG | 0.499187 | 8.2:-69589065 | None:intergenic |
| ATCCTTCTAGTTGTGCATAG+AGG | 0.530865 | 8.2:-69591355 | None:intergenic |
| GTCATTTATTAAGAAAGCAA+TGG | 0.531464 | 8.2:-69589020 | None:intergenic |
| ACAAGAGATTGCGCGGAAGT+AGG | 0.532893 | 8.2:+69591513 | MS.gene86015:CDS |
| TTCGCCGCACTAATTCAGTA+AGG | 0.550065 | 8.2:+69588041 | MS.gene86015:CDS |
| ATTGCGCGGAAGTAGGTATG+AGG | 0.556644 | 8.2:+69591520 | MS.gene86015:CDS |
| GAGGCTGTTATATATACAGC+TGG | 0.561693 | 8.2:+69591539 | MS.gene86015:CDS |
| TCTTTGAGAAATCCGGAGGA+TGG | 0.563666 | 8.2:-69591574 | None:intergenic |
| TCATGTGTAAATGTTCTGAC+AGG | 0.570854 | 8.2:-69588100 | None:intergenic |
| ATGAGTGGGTTGTGTTATGA+GGG | 0.574980 | 8.2:+69589303 | MS.gene86015:CDS |
| CTCTTGTTCTCATAACGAAG+TGG | 0.593418 | 8.2:-69591497 | None:intergenic |
| TGTCAGAACATTTACACATG+AGG | 0.595518 | 8.2:+69588102 | MS.gene86015:CDS |
| AGGTTGCGAGATTATATGAG+TGG | 0.605845 | 8.2:+69589288 | MS.gene86015:intron |
| AGAACACTGCAACTTTCAAG+AGG | 0.620601 | 8.2:-69591443 | None:intergenic |
| ATCCGGAGGATGGAAAGCCA+AGG | 0.629647 | 8.2:-69591564 | None:intergenic |
| TTCACGAAGCAAGAGTGAAG+TGG | 0.649891 | 8.2:-69591407 | None:intergenic |
| TATGAGAACAAGAGATTGCG+CGG | 0.650115 | 8.2:+69591506 | MS.gene86015:CDS |
| TCCGGAGGATGGAAAGCCAA+GGG | 0.655139 | 8.2:-69591563 | None:intergenic |
| AGAGTCCACATCAACAACAA+AGG | 0.674024 | 8.2:-69589133 | None:intergenic |
| GGTTGCGAGATTATATGAGT+GGG | 0.681349 | 8.2:+69589289 | MS.gene86015:intron |
| CAAGCCTTACTGAATTAGTG+CGG | 0.686735 | 8.2:-69588045 | None:intergenic |
| TGAGTCTTTGAGAAATCCGG+AGG | 0.690738 | 8.2:-69591578 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATAATTTTGATATAGTT+TGG | - | chr8.2:69590240-69590259 | None:intergenic | 10.0% |
| !! | ATGTGAAAATATACAAAAAT+TGG | - | chr8.2:69589575-69589594 | None:intergenic | 15.0% |
| !!! | AATAAAAGAAGACTATTTTT+AGG | - | chr8.2:69589536-69589555 | None:intergenic | 15.0% |
| !!! | ATAAAAGAAGACTATTTTTA+GGG | - | chr8.2:69589535-69589554 | None:intergenic | 15.0% |
| !!! | CAAGTCTTATATTTTTATAT+TGG | + | chr8.2:69588491-69588510 | MS.gene86015:intron | 15.0% |
| !! | AAAAATGATGTAAAGAAATC+AGG | - | chr8.2:69589266-69589285 | None:intergenic | 20.0% |
| !! | AAAACTTGAGTTATATGAAT+CGG | + | chr8.2:69588773-69588792 | MS.gene86015:intron | 20.0% |
| !! | AAAATTAGTTACTATCAATG+TGG | - | chr8.2:69591070-69591089 | None:intergenic | 20.0% |
| !! | AAACTATGGTAAAATTTCAA+CGG | + | chr8.2:69589178-69589197 | MS.gene86015:intron | 20.0% |
| !! | AATGTTAATTACGATTTGAA+TGG | + | chr8.2:69591470-69591489 | MS.gene86015:CDS | 20.0% |
| !! | AGAATTATACATCCATTATA+AGG | - | chr8.2:69590338-69590357 | None:intergenic | 20.0% |
| !! | CTTAATAAATGACTACAATT+TGG | + | chr8.2:69589030-69589049 | MS.gene86015:CDS | 20.0% |
| !! | GGTTTAAATTTATCAAAAGT+TGG | + | chr8.2:69590125-69590144 | MS.gene86015:intron | 20.0% |
| !! | TATTTACACATTTACACATT+TGG | + | chr8.2:69588133-69588152 | MS.gene86015:intron | 20.0% |
| !!! | ATGAAATATATGGATTACTT+AGG | - | chr8.2:69589972-69589991 | None:intergenic | 20.0% |
| !!! | TCTTTAATTTTTGATGATCA+GGG | + | chr8.2:69591098-69591117 | MS.gene86015:intron | 20.0% |
| !!! | TTCTTTAATTTTTGATGATC+AGG | + | chr8.2:69591097-69591116 | MS.gene86015:intron | 20.0% |
| !!! | TTTTGATAAATTTAAACCGA+TGG | - | chr8.2:69590123-69590142 | None:intergenic | 20.0% |
| ! | AAAAATAATAGAAGCTAACC+TGG | - | chr8.2:69589341-69589360 | None:intergenic | 25.0% |
| ! | AAAGCTATGAAACTGTTATA+AGG | - | chr8.2:69590151-69590170 | None:intergenic | 25.0% |
| ! | AACCTGATGTTAGATAAAAA+AGG | - | chr8.2:69589756-69589775 | None:intergenic | 25.0% |
| ! | AAGTTATTGTCAAGTCAAAT+AGG | + | chr8.2:69589076-69589095 | MS.gene86015:CDS | 25.0% |
| ! | AATCCATATATTTCATCTAG+TGG | + | chr8.2:69589976-69589995 | MS.gene86015:intron | 25.0% |
| ! | AATTCAAACTCCAAATTAAC+TGG | - | chr8.2:69587913-69587932 | None:intergenic | 25.0% |
| ! | AGAAAAGTTAAGACCTAAAA+TGG | - | chr8.2:69588973-69588992 | None:intergenic | 25.0% |
| ! | CACCATTAAAATCATTAAAG+AGG | - | chr8.2:69589412-69589431 | None:intergenic | 25.0% |
| ! | GAAAGTTAATATCTTAAGCT+TGG | + | chr8.2:69588585-69588604 | MS.gene86015:intron | 25.0% |
| ! | GATATTTATGAGTTTAGATG+TGG | + | chr8.2:69589202-69589221 | MS.gene86015:intron | 25.0% |
| ! | GTCATTTATTAAGAAAGCAA+TGG | - | chr8.2:69589023-69589042 | None:intergenic | 25.0% |
| ! | TAAAGAAATCAGGAAAATGA+AGG | - | chr8.2:69589256-69589275 | None:intergenic | 25.0% |
| ! | TAAGTATTCCACATAGTATA+GGG | + | chr8.2:69587783-69587802 | MS.gene86015:intron | 25.0% |
| ! | TGTTAGATAAAAAAGGATTG+AGG | - | chr8.2:69589749-69589768 | None:intergenic | 25.0% |
| ! | TTTATCTAACATCAGGTTTA+TGG | + | chr8.2:69589758-69589777 | MS.gene86015:intron | 25.0% |
| ! | TTTATGCAATAAGTGAAGAT+TGG | + | chr8.2:69590944-69590963 | MS.gene86015:intron | 25.0% |
| !! | ATTTTCTTCTCTGTTGTATA+TGG | - | chr8.2:69591167-69591186 | None:intergenic | 25.0% |
| !! | CTCTTCATTGATAGTTATTT+GGG | + | chr8.2:69590731-69590750 | MS.gene86015:intron | 25.0% |
| !! | GATTCATATAACTCAAGTTT+TGG | - | chr8.2:69588774-69588793 | None:intergenic | 25.0% |
| !! | TAGTTATTTGGGATATACTT+TGG | + | chr8.2:69590742-69590761 | MS.gene86015:intron | 25.0% |
| !! | TGCCTCTTTAATGATTTTAA+TGG | + | chr8.2:69589407-69589426 | MS.gene86015:intron | 25.0% |
| !!! | ATAGCTACTTTTTCTGAATT+TGG | + | chr8.2:69590578-69590597 | MS.gene86015:intron | 25.0% |
| !!! | ATCCTTTTTTATCTAACATC+AGG | + | chr8.2:69589751-69589770 | MS.gene86015:intron | 25.0% |
| !!! | CTTTAATTTTTGATGATCAG+GGG | + | chr8.2:69591099-69591118 | MS.gene86015:intron | 25.0% |
| !!! | GGCATTTGTTTTTTCTTAAA+GGG | + | chr8.2:69588154-69588173 | MS.gene86015:intron | 25.0% |
| !!! | GGTTAGCTTCTATTATTTTT+TGG | + | chr8.2:69589341-69589360 | MS.gene86015:intron | 25.0% |
| !!! | GTTTTTTTCTCTTCCATTTT+AGG | + | chr8.2:69588957-69588976 | MS.gene86015:intron | 25.0% |
| !!! | TGGCATTTGTTTTTTCTTAA+AGG | + | chr8.2:69588153-69588172 | MS.gene86015:intron | 25.0% |
| !!! | TTTCTTTACATCATTTTTGC+AGG | + | chr8.2:69589268-69589287 | MS.gene86015:intron | 25.0% |
| !!! | TTTCTTTATTTTCATGATGC+AGG | + | chr8.2:69588988-69589007 | MS.gene86015:intron | 25.0% |
| AACAGAGAAGAAAATAGATG+TGG | + | chr8.2:69591172-69591191 | MS.gene86015:intron | 30.0% | |
| AACATCATGAAGAGTCTTAA+TGG | + | chr8.2:69588868-69588887 | MS.gene86015:CDS | 30.0% | |
| ACACGCATATATAAACAAAG+CGG | - | chr8.2:69589933-69589952 | None:intergenic | 30.0% | |
| AGTAAGCTTTCCAATCTAAT+TGG | - | chr8.2:69588452-69588471 | None:intergenic | 30.0% | |
| ATCAGAGTTCATAAGAATGT+AGG | - | chr8.2:69590271-69590290 | None:intergenic | 30.0% | |
| ATGAGCAATGAGTGATAAAT+TGG | - | chr8.2:69590204-69590223 | None:intergenic | 30.0% | |
| ATGTGTGTCATATATGTGTT+TGG | + | chr8.2:69589886-69589905 | MS.gene86015:intron | 30.0% | |
| CTATATGCTCATGGTATATA+AGG | - | chr8.2:69590480-69590499 | None:intergenic | 30.0% | |
| CTCTATTAACTTTGTACATG+CGG | + | chr8.2:69590973-69590992 | MS.gene86015:intron | 30.0% | |
| CTCTGATATATTTCAAGACA+TGG | + | chr8.2:69590284-69590303 | MS.gene86015:intron | 30.0% | |
| CTGGAATTTGAAGACATATA+TGG | + | chr8.2:69589675-69589694 | MS.gene86015:CDS | 30.0% | |
| CTTTGAATAAATTTCGCCTA+AGG | - | chr8.2:69591022-69591041 | None:intergenic | 30.0% | |
| GAAGAGTCTTAATGGTTATA+AGG | + | chr8.2:69588876-69588895 | MS.gene86015:CDS | 30.0% | |
| GGAATGTATAACAGAAATTG+TGG | + | chr8.2:69590305-69590324 | MS.gene86015:intron | 30.0% | |
| GTAAGTATTCCACATAGTAT+AGG | + | chr8.2:69587782-69587801 | MS.gene86015:intron | 30.0% | |
| GTTTCTTTGTAGATGATCTT+AGG | + | chr8.2:69589382-69589401 | MS.gene86015:intron | 30.0% | |
| TCAACTGTGTGTACAATTAT+AGG | - | chr8.2:69588391-69588410 | None:intergenic | 30.0% | |
| TGACAATAACTTCATGTTCA+GGG | - | chr8.2:69589068-69589087 | None:intergenic | 30.0% | |
| TGAGAAGATAGACATAAACT+TGG | - | chr8.2:69588816-69588835 | None:intergenic | 30.0% | |
| TGTCCACTAGATGAAATATA+TGG | - | chr8.2:69589982-69590001 | None:intergenic | 30.0% | |
| TTGACAATAACTTCATGTTC+AGG | - | chr8.2:69589069-69589088 | None:intergenic | 30.0% | |
| ! | AAGTTATGCGAATTTTTGTG+TGG | + | chr8.2:69587849-69587868 | MS.gene86015:intron | 30.0% |
| ! | AGTTATGCGAATTTTTGTGT+GGG | + | chr8.2:69587850-69587869 | MS.gene86015:intron | 30.0% |
| ! | ATAGAGTAGATGAAGTTGAT+TGG | + | chr8.2:69590774-69590793 | MS.gene86015:intron | 30.0% |
| ! | GAAAGCATGAATTATATCAC+AGG | - | chr8.2:69588313-69588332 | None:intergenic | 30.0% |
| ! | GCTCTTCATTGATAGTTATT+TGG | + | chr8.2:69590730-69590749 | MS.gene86015:intron | 30.0% |
| ! | TAGAGTAGATGAAGTTGATT+GGG | + | chr8.2:69590775-69590794 | MS.gene86015:intron | 30.0% |
| ! | TATTTCATCTAGTGGACATT+TGG | + | chr8.2:69589984-69590003 | MS.gene86015:intron | 30.0% |
| ! | TGAAGTCAATTGATAGCTAA+TGG | + | chr8.2:69590548-69590567 | MS.gene86015:intron | 30.0% |
| ! | TGTTCTGTCACAGAATTTTA+AGG | + | chr8.2:69588726-69588745 | MS.gene86015:intron | 30.0% |
| !! | GTTTTTCAGACAGACAAAAA+TGG | + | chr8.2:69591329-69591348 | MS.gene86015:intron | 30.0% |
| !! | TGATATTGCTTTTGTTGGAA+AGG | + | chr8.2:69589648-69589667 | MS.gene86015:CDS | 30.0% |
| !!! | ACGAATTTTTGTTGTTCTCA+AGG | + | chr8.2:69590833-69590852 | MS.gene86015:intron | 30.0% |
| !!! | ATGCTTTTTTAGTATGCTCT+AGG | + | chr8.2:69590041-69590060 | MS.gene86015:intron | 30.0% |
| !!! | TCACAGAATTTTAAGGTACA+TGG | + | chr8.2:69588733-69588752 | MS.gene86015:intron | 30.0% |
| !!! | TGCTTTTTTAGTATGCTCTA+GGG | + | chr8.2:69590042-69590061 | MS.gene86015:intron | 30.0% |
| AAATAGCAACTGGGACATAT+AGG | - | chr8.2:69588697-69588716 | None:intergenic | 35.0% | |
| ACACTTTGTATAGACACCAT+CGG | + | chr8.2:69590104-69590123 | MS.gene86015:intron | 35.0% | |
| ACCATAGTTTCAACTTCTTC+AGG | - | chr8.2:69589168-69589187 | None:intergenic | 35.0% | |
| ACCTGAAGAAGTTGAAACTA+TGG | + | chr8.2:69589164-69589183 | MS.gene86015:CDS | 35.0% | |
| AGACTAATCCCTATACTATG+TGG | - | chr8.2:69587794-69587813 | None:intergenic | 35.0% | |
| AGCTGTGTTTAAATAGCAAC+TGG | - | chr8.2:69588707-69588726 | None:intergenic | 35.0% | |
| AGGTCATGTTAGTTACTACA+AGG | + | chr8.2:69591307-69591326 | MS.gene86015:intron | 35.0% | |
| ATATTGTAAACCGAATGAGC+TGG | - | chr8.2:69589466-69589485 | None:intergenic | 35.0% | |
| CACCAGATTCATATTTATGC+AGG | - | chr8.2:69588420-69588439 | None:intergenic | 35.0% | |
| CGAACTATCAACAAAATCTG+TGG | - | chr8.2:69588025-69588044 | None:intergenic | 35.0% | |
| CTGCATAAATATGAATCTGG+TGG | + | chr8.2:69588418-69588437 | MS.gene86015:intron | 35.0% | |
| GAAGAAAATAGATGTGGTTG+TGG | + | chr8.2:69591178-69591197 | MS.gene86015:intron | 35.0% | |
| GATAAAGGAACATCTGCAAA+AGG | - | chr8.2:69587943-69587962 | None:intergenic | 35.0% | |
| GATAAATTGGATTACTGCCT+TGG | - | chr8.2:69590191-69590210 | None:intergenic | 35.0% | |
| GCTGTGTTTAAATAGCAACT+GGG | - | chr8.2:69588706-69588725 | None:intergenic | 35.0% | |
| GGTTGTAAAATGTCTTGCTT+TGG | + | chr8.2:69589223-69589242 | MS.gene86015:intron | 35.0% | |
| GGTTGTGAAACCAATTAGAT+TGG | + | chr8.2:69588439-69588458 | MS.gene86015:intron | 35.0% | |
| TCATGTGTAAATGTTCTGAC+AGG | - | chr8.2:69588103-69588122 | None:intergenic | 35.0% | |
| TCATTCGGTTTACAATATGC+TGG | + | chr8.2:69589468-69589487 | MS.gene86015:intron | 35.0% | |
| TGCCTGCATAAATATGAATC+TGG | + | chr8.2:69588415-69588434 | MS.gene86015:intron | 35.0% | |
| TGTCAGAACATTTACACATG+AGG | + | chr8.2:69588102-69588121 | MS.gene86015:CDS | 35.0% | |
| TTCCTTTATCAAATGCTCTG+TGG | + | chr8.2:69587953-69587972 | MS.gene86015:intron | 35.0% | |
| TTGAAGGTGGTAGATTTCTA+AGG | - | chr8.2:69590698-69590717 | None:intergenic | 35.0% | |
| ! | CAAAGTGTTTACCTATAAGC+AGG | - | chr8.2:69590092-69590111 | None:intergenic | 35.0% |
| ! | CTTCATTTTACCAGCTCATT+CGG | + | chr8.2:69589453-69589472 | MS.gene86015:intron | 35.0% |
| ! | GCTATCAATTGACTTCAAGT+AGG | - | chr8.2:69590545-69590564 | None:intergenic | 35.0% |
| ! | GCTGCTAATTTTTGTGAACT+TGG | + | chr8.2:69587887-69587906 | MS.gene86015:intron | 35.0% |
| ! | TAAGGTACATGGTTGACTTT+AGG | + | chr8.2:69588744-69588763 | MS.gene86015:intron | 35.0% |
| ! | TAGTGAGTCTTTGAGAAATC+CGG | - | chr8.2:69591584-69591603 | None:intergenic | 35.0% |
| !! | ATCTTCCTTTGTTGTTGATG+TGG | + | chr8.2:69589128-69589147 | MS.gene86015:CDS | 35.0% |
| !! | GGTGATGATATTGCTTTTGT+TGG | + | chr8.2:69589643-69589662 | MS.gene86015:CDS | 35.0% |
| AAAAGGATTGAGGTTCTCAG+TGG | - | chr8.2:69589739-69589758 | None:intergenic | 40.0% | |
| AGAAATCTACCACCTTCAAC+AGG | + | chr8.2:69590699-69590718 | MS.gene86015:intron | 40.0% | |
| AGAACACTGCAACTTTCAAG+AGG | - | chr8.2:69591446-69591465 | None:intergenic | 40.0% | |
| AGAGTCCACATCAACAACAA+AGG | - | chr8.2:69589136-69589155 | None:intergenic | 40.0% | |
| AGGTTGCGAGATTATATGAG+TGG | + | chr8.2:69589288-69589307 | MS.gene86015:intron | 40.0% | |
| ATCACCTGCAAAACACACAA+AGG | + | chr8.2:69591287-69591306 | MS.gene86015:intron | 40.0% | |
| ATGAGCATATAGACCAGTAG+TGG | + | chr8.2:69590488-69590507 | MS.gene86015:intron | 40.0% | |
| CAAGCCTTACTGAATTAGTG+CGG | - | chr8.2:69588048-69588067 | None:intergenic | 40.0% | |
| CTCTTGTTCTCATAACGAAG+TGG | - | chr8.2:69591500-69591519 | None:intergenic | 40.0% | |
| CTTACTTTGGCTGAAGGAAT+TGG | - | chr8.2:69591266-69591285 | None:intergenic | 40.0% | |
| GAGGCTGTTATATATACAGC+TGG | + | chr8.2:69591539-69591558 | MS.gene86015:CDS | 40.0% | |
| GGTTGCGAGATTATATGAGT+GGG | + | chr8.2:69589289-69589308 | MS.gene86015:intron | 40.0% | |
| GTATAACAGAAATTGTGGCG+CGG | + | chr8.2:69590310-69590329 | MS.gene86015:intron | 40.0% | |
| GTGAACTTGGCCAGTTAATT+TGG | + | chr8.2:69587900-69587919 | MS.gene86015:intron | 40.0% | |
| TACCTCTATGCACAACTAGA+AGG | + | chr8.2:69591353-69591372 | MS.gene86015:CDS | 40.0% | |
| TAGTTTCATCGCCTGCTTAT+AGG | + | chr8.2:69590078-69590097 | MS.gene86015:intron | 40.0% | |
| TATATATACAGCTGGTCCCT+TGG | + | chr8.2:69591547-69591566 | MS.gene86015:CDS | 40.0% | |
| TATGAGAACAAGAGATTGCG+CGG | + | chr8.2:69591506-69591525 | MS.gene86015:CDS | 40.0% | |
| TCATCACCAAAATGCTGAGA+TGG | - | chr8.2:69589631-69589650 | None:intergenic | 40.0% | |
| TGACTACAATTTGGCTGACT+TGG | + | chr8.2:69589039-69589058 | MS.gene86015:CDS | 40.0% | |
| TTAGAGATCAGGTTCCAGAA+TGG | - | chr8.2:69591232-69591251 | None:intergenic | 40.0% | |
| TTTGCAGGTGATGCTTACTT+TGG | - | chr8.2:69591279-69591298 | None:intergenic | 40.0% | |
| ! | AAGGCTTGCAGATTTTGGAT+TGG | + | chr8.2:69588060-69588079 | MS.gene86015:CDS | 40.0% |
| ! | ACTACTGGTCTATATGCTCA+TGG | - | chr8.2:69590489-69590508 | None:intergenic | 40.0% |
| ! | ATCCTTCTAGTTGTGCATAG+AGG | - | chr8.2:69591358-69591377 | None:intergenic | 40.0% |
| ! | ATGACCTTTGTGTGTTTTGC+AGG | - | chr8.2:69591294-69591313 | None:intergenic | 40.0% |
| ! | CATAGCTTTGCTTTGTATGC+TGG | + | chr8.2:69590162-69590181 | MS.gene86015:intron | 40.0% |
| ! | CTCCACAGAGCATTTGATAA+AGG | - | chr8.2:69587958-69587977 | None:intergenic | 40.0% |
| ! | CTTTTGTTGGAAAGGACATC+TGG | + | chr8.2:69589656-69589675 | MS.gene86015:CDS | 40.0% |
| ! | GGTTGAATTTGAAATCGCGT+TGG | + | chr8.2:69589779-69589798 | MS.gene86015:intron | 40.0% |
| ! | TCAGTAAGGCTTGCAGATTT+TGG | + | chr8.2:69588055-69588074 | MS.gene86015:CDS | 40.0% |
| ! | TCTGGAACCTGATCTCTAAA+TGG | + | chr8.2:69591233-69591252 | MS.gene86015:intron | 40.0% |
| ! | TTTCCACCATCTCAGCATTT+TGG | + | chr8.2:69589622-69589641 | MS.gene86015:intron | 40.0% |
| !! | ATGAGTGGGTTGTGTTATGA+GGG | + | chr8.2:69589303-69589322 | MS.gene86015:CDS | 40.0% |
| !! | TATGAGTGGGTTGTGTTATG+AGG | + | chr8.2:69589302-69589321 | MS.gene86015:CDS | 40.0% |
| !!! | TGCAGATTTTGGATTGGCTA+GGG | + | chr8.2:69588066-69588085 | MS.gene86015:CDS | 40.0% |
| !!! | TTGCAGATTTTGGATTGGCT+AGG | + | chr8.2:69588065-69588084 | MS.gene86015:CDS | 40.0% |
| !!! | TTGGAAACTCCTTTTCGAGT+GGG | + | chr8.2:69588604-69588623 | MS.gene86015:intron | 40.0% |
| AGCATATAGACCAGTAGTGG+TGG | + | chr8.2:69590491-69590510 | MS.gene86015:intron | 45.0% | |
| AGTCCTCTTTCAAACGCAAC+TGG | - | chr8.2:69588631-69588650 | None:intergenic | 45.0% | |
| ATGCTACATACCACCACTAC+TGG | - | chr8.2:69590504-69590523 | None:intergenic | 45.0% | |
| CAAGCTAAACCTGTTGAAGG+TGG | - | chr8.2:69590711-69590730 | None:intergenic | 45.0% | |
| CCTAAGGCCTCAAAAGTCTT+AGG | - | chr8.2:69591006-69591025 | None:intergenic | 45.0% | |
| CTTGGCTCCATTTAGAGATC+AGG | - | chr8.2:69591243-69591262 | None:intergenic | 45.0% | |
| CTTTCAAGAGGAGACCAAAC+AGG | - | chr8.2:69591434-69591453 | None:intergenic | 45.0% | |
| GAGCAAGCTAAACCTGTTGA+AGG | - | chr8.2:69590714-69590733 | None:intergenic | 45.0% | |
| GCTTTGTATGCTGGATACCA+AGG | + | chr8.2:69590171-69590190 | MS.gene86015:intron | 45.0% | |
| GTGATGCTTACTTTGGCTGA+AGG | - | chr8.2:69591272-69591291 | None:intergenic | 45.0% | |
| TCACCAAAATGCTGAGATGG+TGG | - | chr8.2:69589628-69589647 | None:intergenic | 45.0% | |
| TGAGGGCAACTTACATATCC+AGG | + | chr8.2:69589320-69589339 | MS.gene86015:CDS | 45.0% | |
| TGTCAAACCTGTGACCATTC+TGG | + | chr8.2:69591215-69591234 | MS.gene86015:intron | 45.0% | |
| TTCACGAAGCAAGAGTGAAG+TGG | - | chr8.2:69591410-69591429 | None:intergenic | 45.0% | |
| TTCGCCGCACTAATTCAGTA+AGG | + | chr8.2:69588041-69588060 | MS.gene86015:CDS | 45.0% | |
| TTTGGCTGAAGGAATTGGCT+TGG | - | chr8.2:69591261-69591280 | None:intergenic | 45.0% | |
| ! | TCTTTGAGAAATCCGGAGGA+TGG | - | chr8.2:69591577-69591596 | None:intergenic | 45.0% |
| ! | TGACGTGCCTAAGACTTTTG+AGG | + | chr8.2:69590996-69591015 | MS.gene86015:intron | 45.0% |
| ! | TGAGTCTTTGAGAAATCCGG+AGG | - | chr8.2:69591581-69591600 | None:intergenic | 45.0% |
| !! | CTTGGAAACTCCTTTTCGAG+TGG | + | chr8.2:69588603-69588622 | MS.gene86015:intron | 45.0% |
| !! | TTTGGATTGGCTAGGGCATT+TGG | + | chr8.2:69588073-69588092 | MS.gene86015:CDS | 45.0% |
| !!! | CCTAAGACTTTTGAGGCCTT+AGG | + | chr8.2:69591003-69591022 | MS.gene86015:intron | 45.0% |
| ACAAGAGATTGCGCGGAAGT+AGG | + | chr8.2:69591513-69591532 | MS.gene86015:CDS | 50.0% | |
| ATTGCGCGGAAGTAGGTATG+AGG | + | chr8.2:69591520-69591539 | MS.gene86015:CDS | 50.0% | |
| CTTGCTTCGTGAAGCCTGTT+TGG | + | chr8.2:69591417-69591436 | MS.gene86015:CDS | 50.0% | |
| GGACCAGTTGCGTTTGAAAG+AGG | + | chr8.2:69588625-69588644 | MS.gene86015:intron | 50.0% | |
| TCAGGTTCCAGAATGGTCAC+AGG | - | chr8.2:69591225-69591244 | None:intergenic | 50.0% | |
| TGTGGCGCGGATCCTTATAA+TGG | + | chr8.2:69590323-69590342 | MS.gene86015:intron | 50.0% | |
| ATCCGGAGGATGGAAAGCCA+AGG | - | chr8.2:69591567-69591586 | None:intergenic | 55.0% | |
| GCAACTGGTCCCACTCGAAA+AGG | - | chr8.2:69588616-69588635 | None:intergenic | 55.0% | |
| TCCGGAGGATGGAAAGCCAA+GGG | - | chr8.2:69591566-69591585 | None:intergenic | 55.0% | |
| ! | TCCCTTGGCTTTCCATCCTC+CGG | + | chr8.2:69591562-69591581 | MS.gene86015:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 69587761 | 69591607 | 69587761 | ID=MS.gene86015 |
| chr8.2 | mRNA | 69587761 | 69591607 | 69587761 | ID=MS.gene86015.t1;Parent=MS.gene86015 |
| chr8.2 | exon | 69587761 | 69587781 | 69587761 | ID=MS.gene86015.t1.exon1;Parent=MS.gene86015.t1 |
| chr8.2 | CDS | 69587761 | 69587781 | 69587761 | ID=cds.MS.gene86015.t1;Parent=MS.gene86015.t1 |
| chr8.2 | exon | 69588028 | 69588123 | 69588028 | ID=MS.gene86015.t1.exon2;Parent=MS.gene86015.t1 |
| chr8.2 | CDS | 69588028 | 69588123 | 69588028 | ID=cds.MS.gene86015.t1;Parent=MS.gene86015.t1 |
| chr8.2 | exon | 69588859 | 69588897 | 69588859 | ID=MS.gene86015.t1.exon3;Parent=MS.gene86015.t1 |
| chr8.2 | CDS | 69588859 | 69588897 | 69588859 | ID=cds.MS.gene86015.t1;Parent=MS.gene86015.t1 |
| chr8.2 | exon | 69589010 | 69589185 | 69589010 | ID=MS.gene86015.t1.exon4;Parent=MS.gene86015.t1 |
| chr8.2 | CDS | 69589010 | 69589185 | 69589010 | ID=cds.MS.gene86015.t1;Parent=MS.gene86015.t1 |
| chr8.2 | exon | 69589290 | 69589341 | 69589290 | ID=MS.gene86015.t1.exon5;Parent=MS.gene86015.t1 |
| chr8.2 | CDS | 69589290 | 69589341 | 69589290 | ID=cds.MS.gene86015.t1;Parent=MS.gene86015.t1 |
| chr8.2 | exon | 69589637 | 69589717 | 69589637 | ID=MS.gene86015.t1.exon6;Parent=MS.gene86015.t1 |
| chr8.2 | CDS | 69589637 | 69589717 | 69589637 | ID=cds.MS.gene86015.t1;Parent=MS.gene86015.t1 |
| chr8.2 | exon | 69591338 | 69591607 | 69591338 | ID=MS.gene86015.t1.exon7;Parent=MS.gene86015.t1 |
| chr8.2 | CDS | 69591338 | 69591607 | 69591338 | ID=cds.MS.gene86015.t1;Parent=MS.gene86015.t1 |
| Gene Sequence |
| Protein sequence |
