Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86228.t1 | KEH18885.1 | 71.1 | 356 | 15 | 3 | 1 | 355 | 1 | 269 | 1.60E-137 | 499.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86228.t1 | A0A072TZE4 | 71.1 | 356 | 15 | 3 | 1 | 355 | 1 | 269 | 1.1e-137 | 499.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene061114 | MS.gene86228 | -0.800598 | 1.34E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86228.t1 | MTR_8g031230 | 71.067 | 356 | 15 | 3 | 1 | 355 | 1 | 269 | 6.88e-178 | 494 |
| MS.gene86228.t1 | MTR_5g022270 | 40.669 | 359 | 187 | 8 | 2 | 346 | 73 | 419 | 8.66e-76 | 242 |
| MS.gene86228.t1 | MTR_2g022080 | 40.227 | 353 | 197 | 7 | 2 | 346 | 73 | 419 | 4.13e-75 | 238 |
| MS.gene86228.t1 | MTR_4g040020 | 47.761 | 201 | 99 | 3 | 150 | 346 | 7 | 205 | 4.58e-58 | 187 |
| MS.gene86228.t1 | MTR_8g031240 | 50.000 | 188 | 61 | 3 | 51 | 234 | 6 | 164 | 1.99e-54 | 178 |
| MS.gene86228.t1 | MTR_6g035170 | 35.246 | 244 | 146 | 4 | 42 | 281 | 77 | 312 | 9.17e-43 | 151 |
| MS.gene86228.t1 | MTR_4g007830 | 35.776 | 232 | 136 | 8 | 115 | 339 | 133 | 358 | 1.74e-38 | 140 |
| MS.gene86228.t1 | MTR_8g467430 | 43.750 | 128 | 67 | 2 | 150 | 277 | 101 | 223 | 6.32e-28 | 109 |
| MS.gene86228.t1 | MTR_8g089760 | 32.961 | 179 | 112 | 6 | 165 | 339 | 1 | 175 | 6.20e-24 | 97.4 |
| MS.gene86228.t1 | MTR_6g069440 | 70.690 | 58 | 15 | 1 | 190 | 247 | 37 | 92 | 3.84e-20 | 84.7 |
| MS.gene86228.t1 | MTR_4g077280 | 46.667 | 90 | 44 | 1 | 161 | 246 | 113 | 202 | 1.89e-19 | 85.9 |
| MS.gene86228.t1 | MTR_6g061910 | 25.095 | 263 | 184 | 7 | 86 | 341 | 341 | 597 | 1.32e-12 | 69.3 |
| MS.gene86228.t1 | MTR_1g009820 | 36.458 | 96 | 58 | 3 | 238 | 333 | 1 | 93 | 3.93e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 82 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCTGGATTTGTGGGATAT+TGG | 0.237735 | 5.1:+23369511 | None:intergenic |
| GCAAGTTTAACCCTTGTATC+TGG | 0.280442 | 5.1:+23366852 | None:intergenic |
| TCAAATTCAGTTGGATTCAT+TGG | 0.280879 | 5.1:+23368453 | None:intergenic |
| GGGTTCAACAATTGAGAAAT+TGG | 0.299241 | 5.1:+23367276 | None:intergenic |
| GGTTAAACTTGCCATTGATT+TGG | 0.319721 | 5.1:-23366841 | MS.gene86228:CDS |
| GAATGATATGGAAGCATATA+TGG | 0.336513 | 5.1:-23368272 | MS.gene86228:CDS |
| TCAGTAACGACTCCGGAGTC+TGG | 0.348133 | 5.1:-23367148 | MS.gene86228:intron |
| GCCTGGTCAACCGGAGAATC+AGG | 0.372239 | 5.1:+23368066 | None:intergenic |
| CAAATTCAGTTGGATTCATT+GGG | 0.374935 | 5.1:+23368454 | None:intergenic |
| CTTACACAGGGAGGAAATAC+TGG | 0.375105 | 5.1:-23368142 | MS.gene86228:intron |
| GACTTTGATGCCTGATTCTC+CGG | 0.377784 | 5.1:-23368076 | MS.gene86228:CDS |
| ACTGAATTCCTCTGGATTTG+TGG | 0.396810 | 5.1:+23369503 | None:intergenic |
| CCGGAGTCTGGGTTGCTGCT+TGG | 0.410182 | 5.1:-23367136 | MS.gene86228:CDS |
| CTGAATTCCTCTGGATTTGT+GGG | 0.410931 | 5.1:+23369504 | None:intergenic |
| TCTCTGACTTAGGAGTCCTC+TGG | 0.412298 | 5.1:+23367255 | None:intergenic |
| TAACTAACCGCCTGGTCAAC+CGG | 0.417884 | 5.1:+23368057 | None:intergenic |
| ACATGTGGTTAAGAATGATA+TGG | 0.423357 | 5.1:-23368284 | MS.gene86228:CDS |
| TTCATTCCTATGAATGATCA+AGG | 0.423889 | 5.1:-23367561 | MS.gene86228:CDS |
| GTATGTACCGCAAAATTTGC+TGG | 0.444858 | 5.1:+23367886 | None:intergenic |
| GCCTGATTCTCCGGTTGACC+AGG | 0.448861 | 5.1:-23368067 | MS.gene86228:CDS |
| TCTTTCTTCTCTTGATCTGC+CGG | 0.453713 | 5.1:+23369464 | None:intergenic |
| GGACTCCTAAGTCAGAGATA+TGG | 0.462189 | 5.1:-23367250 | MS.gene86228:CDS |
| ACAAAGTGAACTTGGGGTCG+TGG | 0.465544 | 5.1:-23368118 | MS.gene86228:CDS |
| GAAAGCAACATGCACTTGAC+TGG | 0.467030 | 5.1:-23367776 | MS.gene86228:intron |
| ATACTGGCACAAAGTGAACT+TGG | 0.467750 | 5.1:-23368126 | MS.gene86228:CDS |
| ATGAATCCAACTGAATTTGA+AGG | 0.468397 | 5.1:-23368450 | MS.gene86228:CDS |
| AACTTGGGGTCGTGGGATAC+CGG | 0.468996 | 5.1:-23368110 | MS.gene86228:CDS |
| TGCAAACCTTGATCATTCAT+AGG | 0.473856 | 5.1:+23367555 | None:intergenic |
| AAAAGGATTCAACTCTCAAA+TGG | 0.474106 | 5.1:-23366743 | MS.gene86228:CDS |
| ACGATCCATATCTCTGACTT+AGG | 0.474749 | 5.1:+23367245 | None:intergenic |
| ATCAGGTTTATCCAGATACA+AGG | 0.477282 | 5.1:-23366863 | MS.gene86228:intron |
| GTAATCCCTTCAAATTCAGT+TGG | 0.480197 | 5.1:+23368444 | None:intergenic |
| TAACCACATGTGGGAATGGA+TGG | 0.482192 | 5.1:+23368296 | None:intergenic |
| TTCTTAACCACATGTGGGAA+TGG | 0.493043 | 5.1:+23368292 | None:intergenic |
| AGGTTTGCATTGGTATCTCA+TGG | 0.496668 | 5.1:-23367541 | MS.gene86228:CDS |
| CAGTAACGACTCCGGAGTCT+GGG | 0.499121 | 5.1:-23367147 | MS.gene86228:CDS |
| CTCTGACTTAGGAGTCCTCT+GGG | 0.503684 | 5.1:+23367256 | None:intergenic |
| CCTCATACCTTCTTCAGCCA+TGG | 0.505119 | 5.1:+23369535 | None:intergenic |
| TGCCTTCATGGGAAGAATAG+AGG | 0.508829 | 5.1:-23367715 | MS.gene86228:CDS |
| ACAAGCCAACTGAATTCCTC+TGG | 0.512292 | 5.1:+23369495 | None:intergenic |
| TGAAAGAAAGCTGTTTGTGT+TGG | 0.514606 | 5.1:-23367505 | MS.gene86228:CDS |
| TACTGGCACAAAGTGAACTT+GGG | 0.517239 | 5.1:-23368125 | MS.gene86228:CDS |
| ATCAGGCATCAAAGTCTTGA+GGG | 0.518458 | 5.1:+23368083 | None:intergenic |
| GCGGCGGAACACCATCTTTG+TGG | 0.528306 | 5.1:-23367915 | MS.gene86228:CDS |
| AATGCTATGAACCAAATCAA+TGG | 0.528802 | 5.1:+23366830 | None:intergenic |
| TGACTGGATGCACAATCCTA+AGG | 0.541647 | 5.1:-23367760 | MS.gene86228:CDS |
| AACTCAACCATGGCTGAAGA+AGG | 0.542450 | 5.1:-23369542 | None:intergenic |
| TACAGAAGGTGTTACTATCC+CGG | 0.546037 | 5.1:-23368424 | MS.gene86228:CDS |
| TGAATGATCAAGGTTTGCAT+TGG | 0.547472 | 5.1:-23367551 | MS.gene86228:CDS |
| ATATCATTCTTAACCACATG+TGG | 0.550654 | 5.1:+23368286 | None:intergenic |
| TGAATCCAACTGAATTTGAA+GGG | 0.550677 | 5.1:-23368449 | MS.gene86228:CDS |
| ACATAGAGATGTCTTGAGAA+TGG | 0.553969 | 5.1:-23367448 | MS.gene86228:intron |
| GAGAATTCATATTATGATTG+CGG | 0.554135 | 5.1:-23367325 | MS.gene86228:CDS |
| GCACAATCCTAAGGCTGACA+TGG | 0.554145 | 5.1:-23367751 | MS.gene86228:CDS |
| GTCCTCTATTCTTCCCATGA+AGG | 0.555171 | 5.1:+23367713 | None:intergenic |
| TTCAACTCTCAAATGGTGGA+TGG | 0.555810 | 5.1:-23366736 | MS.gene86228:CDS |
| AGCAGCTTTCTTCCATCACA+TGG | 0.565365 | 5.1:+23367474 | None:intergenic |
| CAAAGTGAACTTGGGGTCGT+GGG | 0.567925 | 5.1:-23368117 | MS.gene86228:CDS |
| CTTGGATGAAAGAATGTGAC+AGG | 0.573578 | 5.1:-23367118 | MS.gene86228:CDS |
| CCATGGCTGAAGAAGGTATG+AGG | 0.574654 | 5.1:-23369535 | MS.gene86228:CDS |
| CCAAGCAGCAACCCAGACTC+CGG | 0.581533 | 5.1:+23367136 | None:intergenic |
| AATCCATCCATTCCCACATG+TGG | 0.585302 | 5.1:-23368299 | MS.gene86228:CDS |
| GCTGGTAGGTACCACAAAGA+TGG | 0.590418 | 5.1:+23367904 | None:intergenic |
| AGGATTCAACTCTCAAATGG+TGG | 0.591880 | 5.1:-23366740 | MS.gene86228:CDS |
| ATTCAGTTGGATTCATTGGG+TGG | 0.593588 | 5.1:+23368457 | None:intergenic |
| AATCAGGCATCAAAGTCTTG+AGG | 0.593941 | 5.1:+23368082 | None:intergenic |
| AATTGAGTGTTCTCTCACCC+AGG | 0.595873 | 5.1:-23369430 | MS.gene86228:intron |
| CAAATCCAGAGGAATTCAGT+TGG | 0.602186 | 5.1:-23369500 | MS.gene86228:CDS |
| TTGGATTCAGCACCATGTGA+TGG | 0.605444 | 5.1:-23367486 | MS.gene86228:CDS |
| GAATTTGAAGGGATTACAGA+AGG | 0.606692 | 5.1:-23368438 | MS.gene86228:CDS |
| GCTGATGACGAAAATCGTCA+TGG | 0.607087 | 5.1:-23368232 | MS.gene86228:CDS |
| GGGAATGGATGGATTGAAAG+AGG | 0.621220 | 5.1:+23368307 | None:intergenic |
| CTGATGACGAAAATCGTCAT+GGG | 0.629931 | 5.1:-23368231 | MS.gene86228:intron |
| GTACCGCAAAATTTGCTGGT+AGG | 0.630547 | 5.1:+23367890 | None:intergenic |
| TGATTCTCCGGTTGACCAGG+CGG | 0.634995 | 5.1:-23368064 | MS.gene86228:intron |
| TTCTCAATTGTTGAACCCAG+AGG | 0.636730 | 5.1:-23367271 | MS.gene86228:CDS |
| TCAGGTTTATCCAGATACAA+GGG | 0.637230 | 5.1:-23366862 | MS.gene86228:intron |
| ATGCGAACACTGGAAGAATG+TGG | 0.664071 | 5.1:-23366772 | MS.gene86228:CDS |
| TATCATTCTTAACCACATGT+GGG | 0.666063 | 5.1:+23368287 | None:intergenic |
| CCAATATCCCACAAATCCAG+AGG | 0.681818 | 5.1:-23369511 | MS.gene86228:CDS |
| ACTGGCACAAAGTGAACTTG+GGG | 0.687141 | 5.1:-23368124 | MS.gene86228:CDS |
| AGAAGGTGTTACTATCCCGG+AGG | 0.774712 | 5.1:-23368421 | MS.gene86228:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATGGATGATATATAAAA+AGG | + | chr5.1:23367326-23367345 | None:intergenic | 15.0% |
| !! | AATGATATAAAAAACAATAC+AGG | - | chr5.1:23367609-23367628 | MS.gene86228:intron | 15.0% |
| !! | TGTAAGAAACTAAAATAAAA+TGG | + | chr5.1:23368616-23368635 | None:intergenic | 15.0% |
| !!! | ATTTGATCATATTTCTAAAA+TGG | + | chr5.1:23367342-23367361 | None:intergenic | 15.0% |
| !!! | TTTTCTTTTCTTTTAATTCT+AGG | - | chr5.1:23367180-23367199 | MS.gene86228:intron | 15.0% |
| !!! | TTTTTTTATTAGGAAACAAT+TGG | - | chr5.1:23369289-23369308 | MS.gene86228:intron | 15.0% |
| !! | AATATGATCAAATTTAATGC+TGG | - | chr5.1:23367349-23367368 | MS.gene86228:CDS | 20.0% |
| !! | AATGCAATAAAAAAATTACC+TGG | + | chr5.1:23366840-23366859 | None:intergenic | 20.0% |
| !! | ATATAAAAAACAATACAGGT+TGG | - | chr5.1:23367613-23367632 | MS.gene86228:intron | 20.0% |
| !! | ATGCAATAAAAAAATTACCT+GGG | + | chr5.1:23366839-23366858 | None:intergenic | 20.0% |
| !! | GAAGTCATATTTAATATGAA+GGG | + | chr5.1:23367488-23367507 | None:intergenic | 20.0% |
| !! | TGAAGTCATATTTAATATGA+AGG | + | chr5.1:23367489-23367508 | None:intergenic | 20.0% |
| !! | TGATATATAAAAAGGATAGA+TGG | + | chr5.1:23367318-23367337 | None:intergenic | 20.0% |
| !! | TGATTTAAATTATAGTCAAG+TGG | + | chr5.1:23367863-23367882 | None:intergenic | 20.0% |
| !!! | ATATTTTCTTTTGAACAAGT+AGG | - | chr5.1:23367642-23367661 | MS.gene86228:intron | 20.0% |
| !!! | ATTTTTGGAAGAAATGTTTA+TGG | - | chr5.1:23368902-23368921 | MS.gene86228:intron | 20.0% |
| !!! | CACGATAAATTATATTTTTC+TGG | - | chr5.1:23369229-23369248 | MS.gene86228:intron | 20.0% |
| !!! | TAAGGTTTATTAGTTTTTGT+GGG | - | chr5.1:23369262-23369281 | MS.gene86228:intron | 20.0% |
| !!! | TACTATACAGTCAATATTTT+TGG | - | chr5.1:23368887-23368906 | MS.gene86228:intron | 20.0% |
| !!! | TATTTTCTTTTGAACAAGTA+GGG | - | chr5.1:23367643-23367662 | MS.gene86228:intron | 20.0% |
| !!! | TTAAGGTTTATTAGTTTTTG+TGG | - | chr5.1:23369261-23369280 | MS.gene86228:intron | 20.0% |
| ! | AAAAGAAAAGAATGTGACAT+TGG | + | chr5.1:23367169-23367188 | None:intergenic | 25.0% |
| ! | AGACAGAAAAAATATTCAGA+AGG | + | chr5.1:23369188-23369207 | None:intergenic | 25.0% |
| ! | ATCATTCCAATTATCTTGAA+GGG | - | chr5.1:23367753-23367772 | MS.gene86228:CDS | 25.0% |
| ! | ATTGTTAGAAAACCTTCTTA+TGG | + | chr5.1:23367429-23367448 | None:intergenic | 25.0% |
| ! | CTACTTTAACAAGTAGAATA+TGG | + | chr5.1:23367214-23367233 | None:intergenic | 25.0% |
| ! | GAGAATTCATATTATGATTG+CGG | - | chr5.1:23368924-23368943 | MS.gene86228:intron | 25.0% |
| ! | TAATTTGACATTCTCTAAGT+TGG | + | chr5.1:23367717-23367736 | None:intergenic | 25.0% |
| ! | TATCATTCCAATTATCTTGA+AGG | - | chr5.1:23367752-23367771 | MS.gene86228:CDS | 25.0% |
| !!! | GTGCTCTTTTTTAAAAAGTT+TGG | - | chr5.1:23367104-23367123 | MS.gene86228:CDS | 25.0% |
| !!! | TAATTCTCCCAATTTGTTTT+CGG | - | chr5.1:23367032-23367051 | MS.gene86228:intron | 25.0% |
| !!! | TGTGGGTAACTTTTTTTATT+AGG | - | chr5.1:23369279-23369298 | MS.gene86228:intron | 25.0% |
| !!! | TGTTTTGGTTATATAAGTTG+TGG | - | chr5.1:23369319-23369338 | MS.gene86228:intron | 25.0% |
| AAAAGGATTCAACTCTCAAA+TGG | - | chr5.1:23369506-23369525 | MS.gene86228:CDS | 30.0% | |
| AACATAGAGATGCCAAATTA+CGG | + | chr5.1:23366945-23366964 | None:intergenic | 30.0% | |
| AAGGTTGCAGAATATTGAAT+AGG | - | chr5.1:23367401-23367420 | MS.gene86228:intron | 30.0% | |
| AATGCTATGAACCAAATCAA+TGG | + | chr5.1:23369422-23369441 | None:intergenic | 30.0% | |
| ACATGTGGTTAAGAATGATA+TGG | - | chr5.1:23367965-23367984 | MS.gene86228:intron | 30.0% | |
| AGTATCTGTTAGAAAAGAGA+AGG | + | chr5.1:23368856-23368875 | None:intergenic | 30.0% | |
| ATATCATTCTTAACCACATG+TGG | + | chr5.1:23367966-23367985 | None:intergenic | 30.0% | |
| ATGAATCCAACTGAATTTGA+AGG | - | chr5.1:23367799-23367818 | MS.gene86228:intron | 30.0% | |
| ATGATCAAATTTAATGCTGG+TGG | - | chr5.1:23367352-23367371 | MS.gene86228:CDS | 30.0% | |
| ATTGAATAGGTACCATAAGA+AGG | - | chr5.1:23367414-23367433 | MS.gene86228:intron | 30.0% | |
| CAAATTCAGTTGGATTCATT+GGG | + | chr5.1:23367798-23367817 | None:intergenic | 30.0% | |
| CACTTACTCTTCTTACATTA+TGG | - | chr5.1:23369037-23369056 | MS.gene86228:intron | 30.0% | |
| CATAACATCAATTGATTGTG+TGG | - | chr5.1:23366887-23366906 | MS.gene86228:intron | 30.0% | |
| GAAAACAAATTGGGAGAATT+AGG | + | chr5.1:23367033-23367052 | None:intergenic | 30.0% | |
| GAAGAATGTGGAAGAAAAAA+AGG | - | chr5.1:23369489-23369508 | MS.gene86228:CDS | 30.0% | |
| GTATCTGTTAGAAAAGAGAA+GGG | + | chr5.1:23368855-23368874 | None:intergenic | 30.0% | |
| TACTGAACCGAAAACAAATT+GGG | + | chr5.1:23367042-23367061 | None:intergenic | 30.0% | |
| TATAAAAAGGATAGATGGTG+AGG | + | chr5.1:23367313-23367332 | None:intergenic | 30.0% | |
| TATCATTCTTAACCACATGT+GGG | + | chr5.1:23367965-23367984 | None:intergenic | 30.0% | |
| TCAAATTCAGTTGGATTCAT+TGG | + | chr5.1:23367799-23367818 | None:intergenic | 30.0% | |
| TGAATCCAACTGAATTTGAA+GGG | - | chr5.1:23367800-23367819 | MS.gene86228:intron | 30.0% | |
| TGATCAAATTTAATGCTGGT+GGG | - | chr5.1:23367353-23367372 | MS.gene86228:CDS | 30.0% | |
| TTAATGTGTGCATTGTTATC+AGG | - | chr5.1:23369369-23369388 | MS.gene86228:intron | 30.0% | |
| TTACTGAACCGAAAACAAAT+TGG | + | chr5.1:23367043-23367062 | None:intergenic | 30.0% | |
| TTCATTCCTATGAATGATCA+AGG | - | chr5.1:23368688-23368707 | MS.gene86228:intron | 30.0% | |
| TTGTTGTATAGGAAATTTGG+TGG | - | chr5.1:23367519-23367538 | MS.gene86228:CDS | 30.0% | |
| ! | AAATAGGGAGTATATTGCTA+AGG | - | chr5.1:23367382-23367401 | MS.gene86228:intron | 30.0% |
| ! | AGCATGTATAATTGATTTCC+TGG | - | chr5.1:23368257-23368276 | MS.gene86228:CDS | 30.0% |
| ! | GAATGATATGGAAGCATATA+TGG | - | chr5.1:23367977-23367996 | MS.gene86228:intron | 30.0% |
| ! | TTTGGTGGTATTTAGTATGA+AGG | - | chr5.1:23367534-23367553 | MS.gene86228:CDS | 30.0% |
| !! | AGTTCATTTGCTTGTTGTAT+AGG | - | chr5.1:23367508-23367527 | MS.gene86228:CDS | 30.0% |
| !! | TGCTTGTTGTATAGGAAATT+TGG | - | chr5.1:23367516-23367535 | MS.gene86228:CDS | 30.0% |
| !! | TTATCACATATTTTTGCAGC+TGG | - | chr5.1:23367234-23367253 | MS.gene86228:intron | 30.0% |
| !!! | TTTTTTCAGAATGCCTTCAT+GGG | - | chr5.1:23368523-23368542 | MS.gene86228:intron | 30.0% |
| AAGAATAGAGGACGTTTGAA+AGG | - | chr5.1:23368546-23368565 | MS.gene86228:intron | 35.0% | |
| ACATAGAGATGCCAAATTAC+GGG | + | chr5.1:23366944-23366963 | None:intergenic | 35.0% | |
| ACATAGAGATGTCTTGAGAA+TGG | - | chr5.1:23368801-23368820 | MS.gene86228:intron | 35.0% | |
| AGCAATCCCTTCAAGATAAT+TGG | + | chr5.1:23367762-23367781 | None:intergenic | 35.0% | |
| ATCAGGTTTATCCAGATACA+AGG | - | chr5.1:23369386-23369405 | MS.gene86228:intron | 35.0% | |
| ATGTTAAAGAAACCTGACAC+AGG | + | chr5.1:23367465-23367484 | None:intergenic | 35.0% | |
| CTAACACACCAAAAAAGATG+CGG | - | chr5.1:23368315-23368334 | MS.gene86228:CDS | 35.0% | |
| GAATTTGAAGGGATTACAGA+AGG | - | chr5.1:23367811-23367830 | MS.gene86228:intron | 35.0% | |
| GGGTTCAACAATTGAGAAAT+TGG | + | chr5.1:23368976-23368995 | None:intergenic | 35.0% | |
| GTAATCCCTTCAAATTCAGT+TGG | + | chr5.1:23367808-23367827 | None:intergenic | 35.0% | |
| TAATGACCTATACAGTAACC+AGG | + | chr5.1:23368278-23368297 | None:intergenic | 35.0% | |
| TCAGGTTTATCCAGATACAA+GGG | - | chr5.1:23369387-23369406 | MS.gene86228:intron | 35.0% | |
| TGAAAGAAAGCTGTTTGTGT+TGG | - | chr5.1:23368744-23368763 | MS.gene86228:intron | 35.0% | |
| TGAATGATCAAGGTTTGCAT+TGG | - | chr5.1:23368698-23368717 | MS.gene86228:intron | 35.0% | |
| TGATTTCCTGGTTACTGTAT+AGG | - | chr5.1:23368269-23368288 | MS.gene86228:CDS | 35.0% | |
| TGCAAACCTTGATCATTCAT+AGG | + | chr5.1:23368697-23368716 | None:intergenic | 35.0% | |
| ! | ACAATTGGTGCAACATGTTT+TGG | - | chr5.1:23369304-23369323 | MS.gene86228:intron | 35.0% |
| ! | GGTTAAACTTGCCATTGATT+TGG | - | chr5.1:23369408-23369427 | MS.gene86228:intron | 35.0% |
| ! | TTGATTTTCAGTAACGACTC+CGG | - | chr5.1:23369094-23369113 | MS.gene86228:intron | 35.0% |
| !!! | GTTTTTTCAGAATGCCTTCA+TGG | - | chr5.1:23368522-23368541 | MS.gene86228:intron | 35.0% |
| AAAAACTCCATGTCAGCCTT+AGG | + | chr5.1:23368508-23368527 | None:intergenic | 40.0% | |
| AACGTGATGATCCCGTAATT+TGG | - | chr5.1:23366930-23366949 | MS.gene86228:intron | 40.0% | |
| AAGTGGAAATGATTACCTCC+GGG | + | chr5.1:23367846-23367865 | None:intergenic | 40.0% | |
| AATCAGGCATCAAAGTCTTG+AGG | + | chr5.1:23368170-23368189 | None:intergenic | 40.0% | |
| ACCAGTTCTCTCTTATCAAG+TGG | - | chr5.1:23367077-23367096 | MS.gene86228:intron | 40.0% | |
| ACGATCCATATCTCTGACTT+AGG | + | chr5.1:23369007-23369026 | None:intergenic | 40.0% | |
| ACTGAATTCCTCTGGATTTG+TGG | + | chr5.1:23366749-23366768 | None:intergenic | 40.0% | |
| AGGATTCAACTCTCAAATGG+TGG | - | chr5.1:23369509-23369528 | MS.gene86228:CDS | 40.0% | |
| ATACTGGCACAAAGTGAACT+TGG | - | chr5.1:23368123-23368142 | MS.gene86228:CDS | 40.0% | |
| ATCAGGCATCAAAGTCTTGA+GGG | + | chr5.1:23368169-23368188 | None:intergenic | 40.0% | |
| ATTCAGTTGGATTCATTGGG+TGG | + | chr5.1:23367795-23367814 | None:intergenic | 40.0% | |
| CAAATCCAGAGGAATTCAGT+TGG | - | chr5.1:23366749-23366768 | MS.gene86228:CDS | 40.0% | |
| CAAGTGGAAATGATTACCTC+CGG | + | chr5.1:23367847-23367866 | None:intergenic | 40.0% | |
| CTGAATTCCTCTGGATTTGT+GGG | + | chr5.1:23366748-23366767 | None:intergenic | 40.0% | |
| CTTGGATGAAAGAATGTGAC+AGG | - | chr5.1:23369131-23369150 | MS.gene86228:intron | 40.0% | |
| GCAAGTTTAACCCTTGTATC+TGG | + | chr5.1:23369400-23369419 | None:intergenic | 40.0% | |
| GCAATTTATAACTAACCGCC+TGG | + | chr5.1:23368203-23368222 | None:intergenic | 40.0% | |
| GTATGTACCGCAAAATTTGC+TGG | + | chr5.1:23368366-23368385 | None:intergenic | 40.0% | |
| TACTGGCACAAAGTGAACTT+GGG | - | chr5.1:23368124-23368143 | MS.gene86228:CDS | 40.0% | |
| TCTTTCTTCTCTTGATCTGC+CGG | + | chr5.1:23366788-23366807 | None:intergenic | 40.0% | |
| TTCTCAATTGTTGAACCCAG+AGG | - | chr5.1:23368978-23368997 | MS.gene86228:intron | 40.0% | |
| TTCTCTCTTATCAAGTGGCT+GGG | - | chr5.1:23367082-23367101 | MS.gene86228:intron | 40.0% | |
| TTCTTAACCACATGTGGGAA+TGG | + | chr5.1:23367960-23367979 | None:intergenic | 40.0% | |
| ! | AGGTTTGCATTGGTATCTCA+TGG | - | chr5.1:23368708-23368727 | MS.gene86228:intron | 40.0% |
| ! | ATTACGGGATCATCACGTTT+TGG | + | chr5.1:23366929-23366948 | None:intergenic | 40.0% |
| ! | CTGATGACGAAAATCGTCAT+GGG | - | chr5.1:23368018-23368037 | MS.gene86228:intron | 40.0% |
| ! | GTACCTACCAGCAAATTTTG+CGG | - | chr5.1:23368356-23368375 | MS.gene86228:intron | 40.0% |
| ! | GTGTTACTGACACTTACACA+GGG | - | chr5.1:23368095-23368114 | MS.gene86228:CDS | 40.0% |
| ! | TCAAAGTCTTGAGGGTTTTC+CGG | + | chr5.1:23368161-23368180 | None:intergenic | 40.0% |
| ! | TGTGTTACTGACACTTACAC+AGG | - | chr5.1:23368094-23368113 | MS.gene86228:CDS | 40.0% |
| ! | TTACGGGATCATCACGTTTT+GGG | + | chr5.1:23366928-23366947 | None:intergenic | 40.0% |
| ! | TTCAACTCTCAAATGGTGGA+TGG | - | chr5.1:23369513-23369532 | MS.gene86228:CDS | 40.0% |
| !! | AGTTGGCTTGTGTGAAAAAC+CGG | - | chr5.1:23366766-23366785 | MS.gene86228:CDS | 40.0% |
| !! | TACAGAAGGTGTTACTATCC+CGG | - | chr5.1:23367825-23367844 | MS.gene86228:intron | 40.0% |
| !!! | GCTGGTGGGTTTTGAAAATA+GGG | - | chr5.1:23367367-23367386 | MS.gene86228:intron | 40.0% |
| !!! | TGCTGGTGGGTTTTGAAAAT+AGG | - | chr5.1:23367366-23367385 | MS.gene86228:intron | 40.0% |
| !!! | TTTTCTGGCTTGCAGCTTTA+AGG | - | chr5.1:23369244-23369263 | MS.gene86228:intron | 40.0% |
| AAATGCAGCATGCTAGAGTC+AGG | + | chr5.1:23366983-23367002 | None:intergenic | 45.0% | |
| AATCCATCCATTCCCACATG+TGG | - | chr5.1:23367950-23367969 | MS.gene86228:CDS | 45.0% | |
| AATTGAGTGTTCTCTCACCC+AGG | - | chr5.1:23366819-23366838 | MS.gene86228:CDS | 45.0% | |
| ACAAGCCAACTGAATTCCTC+TGG | + | chr5.1:23366757-23366776 | None:intergenic | 45.0% | |
| ACACACCAAAAAAGATGCGG+CGG | - | chr5.1:23368318-23368337 | MS.gene86228:intron | 45.0% | |
| ACTGGCACAAAGTGAACTTG+GGG | - | chr5.1:23368125-23368144 | MS.gene86228:CDS | 45.0% | |
| AGCAGCTTTCTTCCATCACA+TGG | + | chr5.1:23368778-23368797 | None:intergenic | 45.0% | |
| ATGCGAACACTGGAAGAATG+TGG | - | chr5.1:23369477-23369496 | MS.gene86228:CDS | 45.0% | |
| CCAATATCCCACAAATCCAG+AGG | - | chr5.1:23366738-23366757 | MS.gene86228:CDS | 45.0% | |
| CCTCTGGATTTGTGGGATAT+TGG | + | chr5.1:23366741-23366760 | None:intergenic | 45.0% | |
| CTTACACAGGGAGGAAATAC+TGG | - | chr5.1:23368107-23368126 | MS.gene86228:CDS | 45.0% | |
| GAAAGCAACATGCACTTGAC+TGG | - | chr5.1:23368473-23368492 | MS.gene86228:CDS | 45.0% | |
| GAACTATCAACACCTGTGTC+AGG | - | chr5.1:23367450-23367469 | MS.gene86228:CDS | 45.0% | |
| GACTTTGATGCCTGATTCTC+CGG | - | chr5.1:23368173-23368192 | MS.gene86228:intron | 45.0% | |
| GCCACTTGATAAGAGAGAAC+TGG | + | chr5.1:23367081-23367100 | None:intergenic | 45.0% | |
| GGACTCCTAAGTCAGAGATA+TGG | - | chr5.1:23368999-23369018 | MS.gene86228:intron | 45.0% | |
| GTCCTCTATTCTTCCCATGA+AGG | + | chr5.1:23368539-23368558 | None:intergenic | 45.0% | |
| GTTCTCTCTTATCAAGTGGC+TGG | - | chr5.1:23367081-23367100 | MS.gene86228:intron | 45.0% | |
| TAACCACATGTGGGAATGGA+TGG | + | chr5.1:23367956-23367975 | None:intergenic | 45.0% | |
| TGACTGGATGCACAATCCTA+AGG | - | chr5.1:23368489-23368508 | MS.gene86228:intron | 45.0% | |
| TGCCTTCATGGGAAGAATAG+AGG | - | chr5.1:23368534-23368553 | MS.gene86228:intron | 45.0% | |
| TTACTGACACTTACACAGGG+AGG | - | chr5.1:23368098-23368117 | MS.gene86228:CDS | 45.0% | |
| TTGGATTCAGCACCATGTGA+TGG | - | chr5.1:23368763-23368782 | MS.gene86228:intron | 45.0% | |
| ! | CTGAAAAAGCATGCGAACAC+TGG | - | chr5.1:23369467-23369486 | MS.gene86228:CDS | 45.0% |
| ! | GAGTCAGGAGATGCATGTTT+TGG | + | chr5.1:23366968-23366987 | None:intergenic | 45.0% |
| ! | GCTGATGACGAAAATCGTCA+TGG | - | chr5.1:23368017-23368036 | MS.gene86228:intron | 45.0% |
| !! | GGGAATGGATGGATTGAAAG+AGG | + | chr5.1:23367945-23367964 | None:intergenic | 45.0% |
| !! | GTACCGCAAAATTTGCTGGT+AGG | + | chr5.1:23368362-23368381 | None:intergenic | 45.0% |
| ACAAAGTGAACTTGGGGTCG+TGG | - | chr5.1:23368131-23368150 | MS.gene86228:CDS | 50.0% | |
| CAAAGTGAACTTGGGGTCGT+GGG | - | chr5.1:23368132-23368151 | MS.gene86228:CDS | 50.0% | |
| CTCTGACTTAGGAGTCCTCT+GGG | + | chr5.1:23368996-23369015 | None:intergenic | 50.0% | |
| GCACAATCCTAAGGCTGACA+TGG | - | chr5.1:23368498-23368517 | MS.gene86228:intron | 50.0% | |
| GCTGGTAGGTACCACAAAGA+TGG | + | chr5.1:23368348-23368367 | None:intergenic | 50.0% | |
| TAACTAACCGCCTGGTCAAC+CGG | + | chr5.1:23368195-23368214 | None:intergenic | 50.0% | |
| TCTCTGACTTAGGAGTCCTC+TGG | + | chr5.1:23368997-23369016 | None:intergenic | 50.0% | |
| !! | AGAAGGTGTTACTATCCCGG+AGG | - | chr5.1:23367828-23367847 | MS.gene86228:intron | 50.0% |
| !!! | GTGTTCCGCCGCATCTTTTT+TGG | + | chr5.1:23368326-23368345 | None:intergenic | 50.0% |
| AACTTGGGGTCGTGGGATAC+CGG | - | chr5.1:23368139-23368158 | MS.gene86228:intron | 55.0% | |
| CAGTAACGACTCCGGAGTCT+GGG | - | chr5.1:23369102-23369121 | MS.gene86228:intron | 55.0% | |
| TCAGTAACGACTCCGGAGTC+TGG | - | chr5.1:23369101-23369120 | MS.gene86228:intron | 55.0% | |
| TGATTCTCCGGTTGACCAGG+CGG | - | chr5.1:23368185-23368204 | MS.gene86228:intron | 55.0% | |
| CCAAGCAGCAACCCAGACTC+CGG | + | chr5.1:23369116-23369135 | None:intergenic | 60.0% | |
| GCCTGATTCTCCGGTTGACC+AGG | - | chr5.1:23368182-23368201 | MS.gene86228:intron | 60.0% | |
| GCCTGGTCAACCGGAGAATC+AGG | + | chr5.1:23368186-23368205 | None:intergenic | 60.0% | |
| GCGGCGGAACACCATCTTTG+TGG | - | chr5.1:23368334-23368353 | MS.gene86228:intron | 60.0% | |
| CCGGAGTCTGGGTTGCTGCT+TGG | - | chr5.1:23369113-23369132 | MS.gene86228:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 23366716 | 23369555 | 23366716 | ID=MS.gene86228 |
| chr5.1 | mRNA | 23366716 | 23369555 | 23366716 | ID=MS.gene86228.t1;Parent=MS.gene86228 |
| chr5.1 | exon | 23369431 | 23369555 | 23369431 | ID=MS.gene86228.t1.exon1;Parent=MS.gene86228.t1 |
| chr5.1 | CDS | 23369431 | 23369555 | 23369431 | ID=cds.MS.gene86228.t1;Parent=MS.gene86228.t1 |
| chr5.1 | exon | 23368422 | 23368497 | 23368422 | ID=MS.gene86228.t1.exon2;Parent=MS.gene86228.t1 |
| chr5.1 | CDS | 23368422 | 23368497 | 23368422 | ID=cds.MS.gene86228.t1;Parent=MS.gene86228.t1 |
| chr5.1 | exon | 23368232 | 23368335 | 23368232 | ID=MS.gene86228.t1.exon3;Parent=MS.gene86228.t1 |
| chr5.1 | CDS | 23368232 | 23368335 | 23368232 | ID=cds.MS.gene86228.t1;Parent=MS.gene86228.t1 |
| chr5.1 | exon | 23368065 | 23368155 | 23368065 | ID=MS.gene86228.t1.exon4;Parent=MS.gene86228.t1 |
| chr5.1 | CDS | 23368065 | 23368155 | 23368065 | ID=cds.MS.gene86228.t1;Parent=MS.gene86228.t1 |
| chr5.1 | exon | 23367894 | 23367980 | 23367894 | ID=MS.gene86228.t1.exon5;Parent=MS.gene86228.t1 |
| chr5.1 | CDS | 23367894 | 23367980 | 23367894 | ID=cds.MS.gene86228.t1;Parent=MS.gene86228.t1 |
| chr5.1 | exon | 23367713 | 23367793 | 23367713 | ID=MS.gene86228.t1.exon6;Parent=MS.gene86228.t1 |
| chr5.1 | CDS | 23367713 | 23367793 | 23367713 | ID=cds.MS.gene86228.t1;Parent=MS.gene86228.t1 |
| chr5.1 | exon | 23367449 | 23367586 | 23367449 | ID=MS.gene86228.t1.exon7;Parent=MS.gene86228.t1 |
| chr5.1 | CDS | 23367449 | 23367586 | 23367449 | ID=cds.MS.gene86228.t1;Parent=MS.gene86228.t1 |
| chr5.1 | exon | 23367247 | 23367374 | 23367247 | ID=MS.gene86228.t1.exon8;Parent=MS.gene86228.t1 |
| chr5.1 | CDS | 23367247 | 23367374 | 23367247 | ID=cds.MS.gene86228.t1;Parent=MS.gene86228.t1 |
| chr5.1 | exon | 23367094 | 23367166 | 23367094 | ID=MS.gene86228.t1.exon9;Parent=MS.gene86228.t1 |
| chr5.1 | CDS | 23367094 | 23367166 | 23367094 | ID=cds.MS.gene86228.t1;Parent=MS.gene86228.t1 |
| chr5.1 | exon | 23366716 | 23366880 | 23366716 | ID=MS.gene86228.t1.exon10;Parent=MS.gene86228.t1 |
| chr5.1 | CDS | 23366716 | 23366880 | 23366716 | ID=cds.MS.gene86228.t1;Parent=MS.gene86228.t1 |
| Gene Sequence |
| Protein sequence |
