AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene86287

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene86287.t1 MTR_1g009750 92.903 310 10 1 1 298 19 328 0.0 590
MS.gene86287.t1 MTR_1g009750 87.419 310 10 2 1 298 19 311 0.0 546
MS.gene86287.t1 MTR_4g095450 61.716 303 98 2 8 297 26 323 3.04e-134 383
MS.gene86287.t1 MTR_4g127670 62.458 301 103 1 8 298 23 323 3.76e-133 380
MS.gene86287.t1 MTR_5g016010 59.406 303 110 1 8 297 26 328 3.41e-132 378
MS.gene86287.t1 MTR_7g029030 54.785 303 119 3 8 298 24 320 4.06e-111 324
MS.gene86287.t1 MTR_0286s0010 42.671 307 157 4 7 298 32 334 3.23e-81 249
MS.gene86287.t1 MTR_6g008075 42.671 307 157 4 7 298 32 334 3.23e-81 249
MS.gene86287.t1 MTR_1g090760 40.777 309 166 3 5 298 24 330 1.35e-77 239
MS.gene86287.t1 MTR_4g087965 40.850 306 162 4 8 296 41 344 7.34e-74 230
MS.gene86287.t1 MTR_8g062780 40.523 306 166 3 7 298 21 324 1.26e-72 227
MS.gene86287.t1 MTR_1g025980 41.694 307 154 8 6 297 21 317 2.47e-71 223
MS.gene86287.t1 MTR_2g029815 42.997 307 155 5 8 298 28 330 6.50e-71 223
MS.gene86287.t1 MTR_1g054205 40.717 307 163 4 8 298 23 326 5.27e-70 220
MS.gene86287.t1 MTR_2g029820 42.671 307 156 5 8 298 28 330 1.03e-69 220
MS.gene86287.t1 MTR_2g029830 42.020 307 158 5 8 298 27 329 1.22e-69 220
MS.gene86287.t1 MTR_7g093370 39.869 306 167 3 8 298 68 371 2.48e-69 219
MS.gene86287.t1 MTR_8g075100 41.254 303 156 6 9 298 26 319 5.54e-68 214
MS.gene86287.t1 MTR_3g092990 38.889 306 170 4 7 298 24 326 2.39e-67 213
MS.gene86287.t1 MTR_2g028980 40.446 314 167 6 1 298 21 330 5.41e-67 213
MS.gene86287.t1 MTR_5g017860 40.584 308 161 7 7 298 25 326 8.59e-67 211
MS.gene86287.t1 MTR_2g029800 39.542 306 167 4 8 298 28 330 1.36e-66 212
MS.gene86287.t1 MTR_7g107520 42.763 304 152 7 9 298 25 320 1.81e-66 211
MS.gene86287.t1 MTR_5g022870 40.789 304 156 8 9 298 23 316 2.76e-66 210
MS.gene86287.t1 MTR_2g029860 40.196 306 165 4 8 298 28 330 2.20e-65 209
MS.gene86287.t1 MTR_2g084090 38.944 303 157 6 12 298 28 318 3.95e-65 207
MS.gene86287.t1 MTR_2g029830 46.522 230 119 2 71 298 34 261 5.29e-65 206
MS.gene86287.t1 MTR_1g101830 39.803 304 163 5 8 298 26 322 5.32e-65 207
MS.gene86287.t1 MTR_2g084080 38.689 305 162 6 8 298 24 317 5.60e-65 207
MS.gene86287.t1 MTR_4g125940 40.129 309 163 4 7 298 26 329 8.94e-65 206
MS.gene86287.t1 MTR_4g029170 40.717 307 157 7 7 298 25 321 9.46e-65 206
MS.gene86287.t1 MTR_2g084000 39.550 311 163 6 2 298 20 319 9.74e-65 206
MS.gene86287.t1 MTR_3g092990 39.597 298 168 5 7 298 24 315 1.35e-64 206
MS.gene86287.t1 MTR_2g084020 39.016 305 162 5 8 298 24 318 1.91e-64 205
MS.gene86287.t1 MTR_5g017850 38.095 315 171 7 1 298 19 326 3.94e-64 205
MS.gene86287.t1 MTR_2g040000 38.436 307 170 4 8 298 28 331 4.28e-64 205
MS.gene86287.t1 MTR_2g084010 39.869 306 158 7 8 298 24 318 1.30e-63 203
MS.gene86287.t1 MTR_2g029750 39.088 307 167 6 8 298 28 330 1.31e-63 204
MS.gene86287.t1 MTR_4g114210 37.700 313 175 5 1 298 13 320 1.67e-63 203
MS.gene86287.t1 MTR_2g084110 38.689 305 162 6 8 298 24 317 1.69e-63 203
MS.gene86287.t1 MTR_4g029180 40.199 301 157 5 12 298 30 321 1.25e-62 201
MS.gene86287.t1 MTR_4g030890 36.688 308 178 6 3 298 94 396 1.53e-62 203
MS.gene86287.t1 MTR_2g088770 38.033 305 171 5 8 298 25 325 2.90e-62 200
MS.gene86287.t1 MTR_4g031140 35.738 305 179 6 6 298 25 324 3.09e-62 200
MS.gene86287.t1 MTR_2g029740 38.742 302 165 6 13 298 33 330 1.66e-61 199
MS.gene86287.t1 MTR_2g008710 38.614 303 167 5 10 298 28 325 2.65e-61 197
MS.gene86287.t1 MTR_3g094650 38.944 303 158 6 8 294 27 318 8.58e-61 196
MS.gene86287.t1 MTR_2g029850 38.907 311 162 5 8 298 28 330 9.39e-61 197
MS.gene86287.t1 MTR_4g133800 39.000 300 162 6 11 298 43 333 1.87e-60 196
MS.gene86287.t1 MTR_5g083860 38.235 306 162 6 9 298 31 325 3.08e-60 195
MS.gene86287.t1 MTR_4g122640 38.511 309 167 8 6 298 35 336 4.49e-60 194
MS.gene86287.t1 MTR_1g086320 37.025 316 175 7 2 298 23 333 6.30e-60 194
MS.gene86287.t1 MTR_5g021060 39.333 300 165 4 13 298 34 330 8.41e-60 194
MS.gene86287.t1 MTR_3g072190 38.487 304 164 4 8 298 25 318 1.67e-59 192
MS.gene86287.t1 MTR_7g086820 35.974 303 171 7 9 298 20 312 2.89e-59 192
MS.gene86287.t1 MTR_2g029910 39.216 306 169 5 8 298 29 332 6.41e-59 192
MS.gene86287.t1 MTR_1g077000 36.304 303 166 6 9 298 39 327 1.61e-58 190
MS.gene86287.t1 MTR_4g046713 38.361 305 170 3 8 298 26 326 3.91e-58 189
MS.gene86287.t1 MTR_2g029560 37.785 307 171 6 8 298 23 325 7.96e-58 189
MS.gene86287.t1 MTR_3g467600 39.241 316 164 7 1 298 19 324 1.16e-57 188
MS.gene86287.t1 MTR_6g043280 37.624 303 165 7 9 298 41 332 1.65e-57 188
MS.gene86287.t1 MTR_1g038680 36.039 308 173 7 10 298 30 332 3.50e-57 187
MS.gene86287.t1 MTR_7g086870 36.964 303 165 7 9 298 22 311 5.01e-57 186
MS.gene86287.t1 MTR_7g072510 35.948 306 173 4 6 298 17 312 5.83e-57 186
MS.gene86287.t1 MTR_3g105790 36.755 302 175 4 9 298 25 322 7.83e-57 186
MS.gene86287.t1 MTR_4g125940 41.912 272 136 4 44 298 8 274 9.27e-57 184
MS.gene86287.t1 MTR_2g008730 38.225 293 158 5 10 298 28 301 1.45e-56 184
MS.gene86287.t1 MTR_2g437770 35.526 304 170 8 9 298 50 341 2.13e-56 185
MS.gene86287.t1 MTR_1g086490 36.223 323 175 7 2 298 23 340 3.15e-56 185
MS.gene86287.t1 MTR_6g043240 37.000 300 169 5 9 298 42 331 9.83e-56 184
MS.gene86287.t1 MTR_3g094670 37.954 303 161 6 8 294 27 318 1.07e-55 183
MS.gene86287.t1 MTR_5g074860 39.274 303 155 9 13 297 33 324 1.08e-55 183
MS.gene86287.t1 MTR_6g043460 36.455 299 167 5 9 294 36 324 2.32e-55 183
MS.gene86287.t1 MTR_3g094630 38.111 307 163 6 8 298 27 322 7.57e-55 181
MS.gene86287.t1 MTR_8g076820 35.831 307 180 4 6 298 27 330 9.56e-55 181
MS.gene86287.t1 MTR_6g027440 37.829 304 167 6 8 298 20 314 2.18e-54 179
MS.gene86287.t1 MTR_5g074760 38.217 314 155 11 8 298 24 321 7.15e-54 178
MS.gene86287.t1 MTR_3g072190 42.105 228 123 2 71 298 33 251 1.27e-53 175
MS.gene86287.t1 MTR_4g083710 37.380 313 167 8 4 298 23 324 3.08e-53 177
MS.gene86287.t1 MTR_2g008160 36.275 306 177 6 7 298 22 323 3.60e-53 176
MS.gene86287.t1 MTR_2g029730 36.808 307 174 5 8 298 24 326 9.25e-53 176
MS.gene86287.t1 MTR_4g029200 34.505 313 178 5 1 298 38 338 3.69e-52 174
MS.gene86287.t1 MTR_0155s0040 34.653 303 171 6 9 298 27 315 5.20e-52 173
MS.gene86287.t1 MTR_7g072480 34.304 309 174 4 6 298 21 316 1.06e-51 172
MS.gene86287.t1 MTR_5g074710 37.580 314 157 11 8 298 24 321 1.22e-51 172
MS.gene86287.t1 MTR_3g466200 35.048 311 172 8 6 298 22 320 1.46e-51 172
MS.gene86287.t1 MTR_5g074740 37.261 314 158 11 8 298 24 321 2.90e-51 171
MS.gene86287.t1 MTR_5g074970 36.538 312 165 8 7 298 28 326 2.97e-51 171
MS.gene86287.t1 MTR_3g105790 39.113 248 145 3 53 298 3 246 5.51e-51 168
MS.gene86287.t1 MTR_4g132490 34.641 306 179 7 8 298 28 327 1.42e-50 170
MS.gene86287.t1 MTR_5g014100 35.737 319 180 8 1 298 17 331 1.74e-50 170
MS.gene86287.t1 MTR_4g074995 38.339 313 151 10 4 298 20 308 3.41e-50 168
MS.gene86287.t1 MTR_5g049280 33.439 314 178 9 8 298 32 337 3.87e-49 166
MS.gene86287.t1 MTR_1g022970 33.443 305 185 4 9 298 46 347 1.45e-48 165
MS.gene86287.t1 MTR_2g099175 34.202 307 180 5 8 298 35 335 3.45e-48 164
MS.gene86287.t1 MTR_4g029190 35.048 311 172 8 6 298 42 340 4.46e-47 161
MS.gene86287.t1 MTR_1g066640 34.091 308 178 6 7 298 25 323 3.97e-46 158
MS.gene86287.t1 MTR_7g026990 34.448 299 172 6 13 298 35 322 6.29e-46 157
MS.gene86287.t1 MTR_1g066710 33.981 309 177 6 7 298 25 323 1.16e-45 157
MS.gene86287.t1 MTR_2g067440 31.045 335 185 5 5 297 56 386 1.45e-45 158
MS.gene86287.t1 MTR_4g074990 34.076 314 164 8 2 298 18 305 3.53e-45 155
MS.gene86287.t1 MTR_1g115900 34.628 309 175 8 6 298 24 321 5.21e-45 155
MS.gene86287.t1 MTR_2g078610 31.657 338 182 7 5 297 72 405 8.72e-45 157
MS.gene86287.t1 MTR_1g066380 32.353 306 186 5 7 298 25 323 8.75e-44 152
MS.gene86287.t1 MTR_2g077990 31.065 338 184 5 5 297 72 405 1.39e-43 154
MS.gene86287.t1 MTR_0147s0010 33.226 310 181 6 9 297 77 381 1.40e-43 153
MS.gene86287.t1 MTR_3g466180 33.987 306 179 5 6 298 28 323 3.61e-43 150
MS.gene86287.t1 MTR_4g132110 32.353 306 182 6 9 298 32 328 7.52e-43 150
MS.gene86287.t1 MTR_5g074700 39.056 233 111 9 72 298 7 214 3.42e-42 145
MS.gene86287.t1 MTR_1g066680 33.442 308 179 6 7 298 25 322 5.80e-42 147
MS.gene86287.t1 MTR_4g132110 31.833 311 182 8 9 298 32 333 7.50e-41 145
MS.gene86287.t1 MTR_2g008160 32.026 306 155 6 7 298 22 288 4.32e-39 139
MS.gene86287.t1 MTR_2g078280 30.769 325 176 5 5 284 72 392 1.62e-38 140
MS.gene86287.t1 MTR_2g029880 38.947 190 104 3 111 298 9 188 2.58e-38 134
MS.gene86287.t1 MTR_3g072210 40.838 191 104 3 110 298 55 238 1.11e-37 134
MS.gene86287.t1 MTR_5g033470 31.529 314 182 11 9 298 73 377 2.26e-37 136
MS.gene86287.t1 MTR_1g066380 35.217 230 139 4 72 298 33 255 8.19e-37 132
MS.gene86287.t1 MTR_4g074980 31.310 313 160 9 3 298 20 294 4.46e-36 131
MS.gene86287.t1 MTR_4g074980 34.694 245 132 7 3 230 20 253 1.67e-35 129
MS.gene86287.t1 MTR_5g074860 33.003 303 135 9 13 297 33 285 8.21e-34 125
MS.gene86287.t1 MTR_2g067450 27.619 315 194 5 5 297 7 309 4.78e-32 121
MS.gene86287.t1 MTR_5g058120 39.157 166 88 5 130 294 2 155 5.58e-26 103
MS.gene86287.t1 MTR_2g008160 37.143 175 98 4 7 172 22 193 4.07e-25 100
MS.gene86287.t1 MTR_7g086790 34.783 184 95 6 50 233 24 182 7.29e-23 94.0
MS.gene86287.t1 MTR_2g078560 27.602 221 129 2 108 297 99 319 4.27e-22 94.4
MS.gene86287.t1 MTR_4g031040 34.228 149 79 3 91 237 5 136 4.75e-22 90.1
MS.gene86287.t1 MTR_7g072490 32.273 220 86 7 72 291 31 187 2.74e-21 90.1
MS.gene86287.t1 MTR_2g077980 28.322 286 160 8 51 297 4 283 3.42e-19 85.9
MS.gene86287.t1 MTR_3g462850 33.803 142 87 5 163 298 9 149 7.54e-17 76.3
MS.gene86287.t1 MTR_1g098320 38.384 99 54 1 207 298 26 124 1.87e-16 75.1
MS.gene86287.t1 MTR_7g107500 45.122 82 44 1 217 298 17 97 2.92e-15 70.5
MS.gene86287.t1 MTR_3g107060 24.275 276 133 7 30 283 95 316 5.68e-12 65.5
MS.gene86287.t1 MTR_1g089005 38.060 134 50 7 1 110 7 131 9.01e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene86287.t1 AT4G30170 64.803 304 98 1 4 298 22 325 5.45e-145 410
MS.gene86287.t1 AT2G18980 64.000 300 99 1 8 298 24 323 7.06e-139 395
MS.gene86287.t1 AT5G67400 59.211 304 111 1 8 298 26 329 8.15e-131 375
MS.gene86287.t1 AT4G37520 57.566 304 116 1 8 298 26 329 1.49e-129 372
MS.gene86287.t1 AT4G37530 56.863 306 119 1 6 298 24 329 4.65e-129 370
MS.gene86287.t1 AT3G49960 57.895 304 115 1 8 298 26 329 7.40e-127 365
MS.gene86287.t1 AT4G37520 57.237 304 114 2 8 298 26 326 1.23e-126 364
MS.gene86287.t1 AT4G37530 59.375 256 91 1 6 248 24 279 6.41e-111 323
MS.gene86287.t1 AT5G14130 50.968 310 137 3 1 298 24 330 3.95e-101 300
MS.gene86287.t1 AT5G14130 50.968 310 137 3 1 298 65 371 7.16e-101 300
MS.gene86287.t1 AT4G17690 43.934 305 148 5 9 298 26 322 4.41e-81 248
MS.gene86287.t1 AT5G40150 42.581 310 149 5 7 298 30 328 1.92e-80 247
MS.gene86287.t1 AT3G28200 41.234 308 155 5 7 298 19 316 1.66e-78 241
MS.gene86287.t1 AT5G47000 42.623 305 153 5 9 298 33 330 5.46e-77 238
MS.gene86287.t1 AT2G34060 40.717 307 163 5 8 297 41 345 3.31e-74 231
MS.gene86287.t1 AT1G24110 42.105 304 159 4 9 298 22 322 1.80e-71 224
MS.gene86287.t1 AT5G42180 41.254 303 155 7 9 297 23 316 3.29e-69 218
MS.gene86287.t1 AT3G21770 39.032 310 171 6 1 296 21 326 7.40e-67 212
MS.gene86287.t1 AT2G18140 38.961 308 171 4 5 298 31 335 8.00e-67 212
MS.gene86287.t1 AT5G06730 38.312 308 172 4 6 298 30 334 1.37e-66 212
MS.gene86287.t1 AT1G05260 39.344 305 167 5 8 298 25 325 1.74e-66 211
MS.gene86287.t1 AT4G36430 39.216 306 167 4 8 298 29 330 5.96e-66 209
MS.gene86287.t1 AT4G16270 39.344 305 164 7 9 298 50 348 1.16e-65 209
MS.gene86287.t1 AT2G38380 39.739 307 166 6 8 298 30 333 5.14e-65 208
MS.gene86287.t1 AT4G11290 38.535 314 173 5 1 298 17 326 2.77e-64 205
MS.gene86287.t1 AT4G31760 37.255 306 176 4 5 298 25 326 5.82e-64 204
MS.gene86287.t1 AT5G64120 37.793 299 170 5 10 298 36 328 1.13e-63 204
MS.gene86287.t1 AT5G15180 37.459 307 174 5 5 298 28 329 2.46e-63 203
MS.gene86287.t1 AT3G50990 38.585 311 174 4 2 298 34 341 3.43e-63 203
MS.gene86287.t1 AT2G18150 37.667 300 170 4 13 298 40 336 5.09e-63 202
MS.gene86287.t1 AT5G51890 37.829 304 168 6 9 298 26 322 5.33e-63 202
MS.gene86287.t1 AT5G06720 37.338 308 175 4 6 298 29 333 6.61e-63 202
MS.gene86287.t1 AT5G19880 39.103 312 163 7 8 298 24 329 2.10e-62 201
MS.gene86287.t1 AT5G17820 37.874 301 167 5 8 298 23 313 4.72e-62 199
MS.gene86287.t1 AT2G24800 37.500 304 173 5 8 298 30 329 5.03e-62 199
MS.gene86287.t1 AT1G71695 37.171 304 169 5 9 298 44 339 6.78e-62 200
MS.gene86287.t1 AT1G05240 37.255 306 170 6 9 298 26 325 1.82e-61 198
MS.gene86287.t1 AT1G05250 37.255 306 170 6 9 298 26 325 1.82e-61 198
MS.gene86287.t1 AT5G17820 37.874 301 167 5 8 298 76 366 4.43e-61 198
MS.gene86287.t1 AT2G38390 38.111 307 171 6 8 298 30 333 4.69e-60 195
MS.gene86287.t1 AT5G39580 37.667 300 170 6 10 298 26 319 4.73e-60 194
MS.gene86287.t1 AT4G33420 38.111 307 163 6 5 298 33 325 6.49e-60 194
MS.gene86287.t1 AT5G05340 36.808 307 167 6 8 298 29 324 1.54e-59 193
MS.gene86287.t1 AT4G33420 38.111 307 163 6 5 298 80 372 1.92e-59 194
MS.gene86287.t1 AT5G66390 38.333 300 168 4 13 298 37 333 3.12e-59 192
MS.gene86287.t1 AT3G32980 35.987 314 181 5 2 298 24 334 3.78e-59 193
MS.gene86287.t1 AT3G01190 38.436 307 169 6 5 298 22 321 4.39e-59 192
MS.gene86287.t1 AT5G19890 38.033 305 169 6 8 298 29 327 7.92e-59 191
MS.gene86287.t1 AT2G22420 36.093 302 176 6 9 298 23 319 1.05e-58 191
MS.gene86287.t1 AT4G08780 37.013 308 174 5 8 298 23 327 4.20e-57 187
MS.gene86287.t1 AT1G49570 36.570 309 171 6 7 296 46 348 6.17e-57 187
MS.gene86287.t1 AT3G03670 34.528 307 178 6 8 298 22 321 1.73e-56 185
MS.gene86287.t1 AT5G64110 37.748 302 169 5 10 298 35 330 1.96e-56 185
MS.gene86287.t1 AT3G49120 36.129 310 178 5 6 298 29 335 2.80e-56 185
MS.gene86287.t1 AT4G25980 36.928 306 172 5 9 298 26 326 3.11e-56 184
MS.gene86287.t1 AT3G49110 36.039 308 177 5 8 298 32 336 3.72e-56 185
MS.gene86287.t1 AT2G39040 36.334 311 173 8 8 298 45 350 1.02e-55 184
MS.gene86287.t1 AT2G41480 36.393 305 174 5 9 298 29 328 4.89e-55 181
MS.gene86287.t1 AT4G08770 35.714 308 178 5 8 298 23 327 8.90e-55 181
MS.gene86287.t1 AT1G14540 35.667 300 170 5 13 298 25 315 2.05e-54 179
MS.gene86287.t1 AT1G30870 36.601 306 167 8 9 298 51 345 1.82e-53 178
MS.gene86287.t1 AT4G33870 32.344 337 176 6 7 295 66 398 2.16e-53 179
MS.gene86287.t1 AT5G24070 35.714 308 175 6 8 298 34 335 2.79e-52 175
MS.gene86287.t1 AT1G14550 36.624 314 170 10 2 298 20 321 1.42e-51 172
MS.gene86287.t1 AT1G68850 33.762 311 180 9 9 298 30 335 7.78e-51 171
MS.gene86287.t1 AT4G26010 34.754 305 169 8 8 298 21 309 5.59e-50 168
MS.gene86287.t1 AT4G26010 34.754 305 169 8 8 298 49 337 1.13e-49 168
MS.gene86287.t1 AT2G43480 34.304 309 178 8 8 298 34 335 1.33e-49 167
MS.gene86287.t1 AT5G22410 35.430 302 173 8 8 294 27 321 8.09e-49 166
MS.gene86287.t1 AT5G58400 35.599 309 169 8 8 298 29 325 8.61e-49 165
MS.gene86287.t1 AT1G34510 35.314 303 170 7 8 298 21 309 9.10e-49 165
MS.gene86287.t1 AT5G64100 35.216 301 174 6 11 298 39 331 3.71e-48 164
MS.gene86287.t1 AT1G44970 34.528 307 183 4 7 298 43 346 1.44e-47 162
MS.gene86287.t1 AT1G77100 34.076 314 173 9 5 298 20 319 3.49e-45 155
MS.gene86287.t1 AT4G21960 32.026 306 183 6 9 298 31 327 3.81e-44 153
MS.gene86287.t1 AT2G35380 34.426 305 178 6 13 298 34 335 4.43e-44 153
MS.gene86287.t1 AT5G58390 35.082 305 168 8 8 294 20 312 5.60e-44 152
MS.gene86287.t1 AT2G37130 33.007 306 183 5 8 298 29 327 2.05e-42 149
MS.gene86287.t1 AT2G37130 33.003 303 181 5 11 298 1 296 7.11e-42 146
MS.gene86287.t1 AT2G35380 36.290 248 149 5 57 298 3 247 2.04e-37 133
MS.gene86287.t1 AT3G17070 29.968 317 188 7 5 298 34 339 1.61e-34 128
MS.gene86287.t1 AT3G17070 31.944 216 139 3 88 298 64 276 4.65e-28 109
MS.gene86287.t1 AT5G39580 36.207 174 96 4 10 173 26 194 1.92e-23 96.7
MS.gene86287.t1 AT2G24800 34.731 167 95 3 8 164 30 192 4.02e-23 95.9
MS.gene86287.t1 AT4G25980 35.465 172 97 4 9 170 71 238 8.31e-20 87.8
MS.gene86287.t1 AT4G32320 26.316 266 120 7 40 283 114 325 4.67e-14 72.0

Find 51 sgRNAs with CRISPR-Local

Find 94 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTAAATTCGTTTCGAAAAT+TGG 0.126752 1.3:+10448480 None:intergenic
GGTTTCATGTGCTGACATTT+TGG 0.193486 1.3:-10449291 MS.gene86287:CDS
TAAATTCTGGATGAGGTAAA+TGG 0.281278 1.3:+10448736 None:intergenic
GCCATGCGAAGCAAACATTT+TGG 0.290824 1.3:+10448698 None:intergenic
CCAGCTAGTGAAAGATTAAT+AGG 0.295737 1.3:+10449380 None:intergenic
TTGACTATTGATTCAACATT+TGG 0.300177 1.3:+10449664 None:intergenic
AGTCTAGGGTCAACATCTTT+TGG 0.323696 1.3:+10448386 None:intergenic
AAGAATCTTCAGCAAGGAAT+TGG 0.349074 1.3:-10448311 MS.gene86287:CDS
TCAAATGTCCTAGGTGTAAT+AGG 0.351694 1.3:+10448347 None:intergenic
CAGCACATGAAACCTTGTTT+TGG 0.362555 1.3:+10449300 None:intergenic
ACTGATCTAATTGCTCTATC+AGG 0.379757 1.3:-10448666 MS.gene86287:intron
AGCTTTGCTAGTTTAAATTC+TGG 0.381289 1.3:+10448723 None:intergenic
GTTGCAGGAGCGCATACTAT+TGG 0.391862 1.3:-10448518 MS.gene86287:intron
GCTGAAGATTCTTGTAGTAC+TGG 0.400409 1.3:+10448321 None:intergenic
GGTCGAATCGGTGTCAAAAC+AGG 0.418276 1.3:-10448170 MS.gene86287:CDS
CCTATTAATCTTTCACTAGC+TGG 0.433861 1.3:-10449380 MS.gene86287:CDS
GTCATTGCTATAACAAAGCT+TGG 0.446107 1.3:-10448191 MS.gene86287:CDS
CGAATTTACAACTTCAAAAG+TGG 0.458989 1.3:-10448467 MS.gene86287:CDS
ACCAAAATGTTTGCTTCGCA+TGG 0.466786 1.3:-10448699 MS.gene86287:CDS
CGGTGTCAAAACAGGAAGAC+AGG 0.474584 1.3:-10448162 MS.gene86287:CDS
GCCATCTTATGCAGTAGAGT+TGG 0.478366 1.3:-10448802 MS.gene86287:CDS
GCTAGTTTAAATTCTGGATG+AGG 0.479771 1.3:+10448729 None:intergenic
CCATCTTATGCAGTAGAGTT+GGG 0.481756 1.3:-10448801 MS.gene86287:CDS
ATAACAAAGCTTGGTCGAAT+CGG 0.497022 1.3:-10448182 MS.gene86287:CDS
TGACCTGAACAAAACAATCA+TGG 0.497510 1.3:+10449575 None:intergenic
CTGATGCAAACAAGTTCACT+AGG 0.502413 1.3:+10448240 None:intergenic
AATCTTTCACTAGCTGGTGA+TGG 0.509300 1.3:-10449374 MS.gene86287:CDS
TAGAGTTGGGACGGCTCGAT+GGG 0.527193 1.3:-10448788 MS.gene86287:CDS
CCCTAGACTTGCCATTGACA+TGG 0.537266 1.3:-10448372 MS.gene86287:CDS
AACTAGGGATGTCATAGCAT+TGG 0.540127 1.3:-10449261 MS.gene86287:intron
GCTGCAGTTGATAGTGTACC+TGG 0.544755 1.3:-10449326 MS.gene86287:CDS
GCATATCCACGATTAAGTGA+TGG 0.545065 1.3:+10448431 None:intergenic
TCCATGTCAATGGCAAGTCT+AGG 0.545251 1.3:+10448371 None:intergenic
TTACAGCACCTGCTACACTT+AGG 0.551805 1.3:-10449606 MS.gene86287:CDS
CCCAACTCTACTGCATAAGA+TGG 0.558764 1.3:+10448801 None:intergenic
AATGACAAAGGATCTTTCAA+AGG 0.558847 1.3:+10448208 None:intergenic
GTAGAGTTGGGACGGCTCGA+TGG 0.559055 1.3:-10448789 MS.gene86287:CDS
CCATGTCAATGGCAAGTCTA+GGG 0.561301 1.3:+10448372 None:intergenic
TGTAATAGGATCCATGTCAA+TGG 0.569424 1.3:+10448361 None:intergenic
TACTGGTTATCAAATGTCCT+AGG 0.574304 1.3:+10448338 None:intergenic
TGTACCTGGCTGCCAAAACA+AGG 0.585491 1.3:-10449312 MS.gene86287:CDS
GAATTTACAACTTCAAAAGT+GGG 0.602558 1.3:-10448466 MS.gene86287:CDS
TTACAACTTCAAAAGTGGGA+AGG 0.608022 1.3:-10448462 MS.gene86287:CDS
TGACACAGTAATCAAAGCAA+AGG 0.610314 1.3:-10449348 MS.gene86287:CDS
CTTATGCAGTAGAGTTGGGA+CGG 0.614543 1.3:-10448797 MS.gene86287:CDS
CTTTGTTATAGCAATGACAA+AGG 0.633095 1.3:+10448196 None:intergenic
ATTGATCCATCACTTAATCG+TGG 0.647751 1.3:-10448437 MS.gene86287:CDS
CAATTAGATCAGTAAGAGTG+AGG 0.653342 1.3:+10448676 None:intergenic
TACTACAAGAATCTTCAGCA+AGG 0.656089 1.3:-10448317 MS.gene86287:CDS
ACATGGATCCTATTACACCT+AGG 0.672246 1.3:-10448355 MS.gene86287:CDS
GGTGTCAAAACAGGAAGACA+GGG 0.680653 1.3:-10448161 MS.gene86287:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATAAATTTGCTTATAAAT+GGG + chr1.3:10448905-10448924 None:intergenic 10.0%
!!! TTTATAAATTTGCTTATAAA+TGG + chr1.3:10448906-10448925 None:intergenic 10.0%
!! ATAAAATATCATTCTTCTTA+TGG - chr1.3:10448921-10448940 MS.gene86287:intron 15.0%
!! ATAACATTATTGAATAACTT+TGG - chr1.3:10448953-10448972 MS.gene86287:intron 15.0%
!! ATAATTTAAACTGAAATGAA+TGG - chr1.3:10449305-10449324 MS.gene86287:CDS 15.0%
!!! GTTTTACTAAACTATTATAA+CGG - chr1.3:10448825-10448844 MS.gene86287:intron 15.0%
!! TGCAATGATTAACTTATATT+AGG + chr1.3:10448655-10448674 None:intergenic 20.0%
!!! AAACTGAACAGAATTTTTAA+TGG + chr1.3:10448809-10448828 None:intergenic 20.0%
! ACTAAACTATTATAACGGTT+CGG - chr1.3:10448830-10448849 MS.gene86287:intron 25.0%
! CAATGTTACAATTATCTACA+TGG + chr1.3:10448979-10448998 None:intergenic 25.0%
! CATTGCAATTTAGTAAAGTT+CGG - chr1.3:10448668-10448687 MS.gene86287:CDS 25.0%
! GAATTTACAACTTCAAAAGT+GGG - chr1.3:10449379-10449398 MS.gene86287:CDS 25.0%
! TATTTGTGTATGTATGTACA+GGG - chr1.3:10448387-10448406 MS.gene86287:CDS 25.0%
! TGTAAATTCGTTTCGAAAAT+TGG + chr1.3:10449368-10449387 None:intergenic 25.0%
!!! AAATAATTGCTTTTTCAGAC+AGG - chr1.3:10449017-10449036 MS.gene86287:intron 25.0%
!!! TTGACTATTGATTCAACATT+TGG + chr1.3:10448184-10448203 None:intergenic 25.0%
AATCAAACCAAACTGGTATA+AGG + chr1.3:10448777-10448796 None:intergenic 30.0%
AATGACAAAGGATCTTTCAA+AGG + chr1.3:10449640-10449659 None:intergenic 30.0%
CGAATTTACAACTTCAAAAG+TGG - chr1.3:10449378-10449397 MS.gene86287:CDS 30.0%
GAATATGAGACTCGTTATTT+AGG - chr1.3:10449241-10449260 MS.gene86287:intron 30.0%
GTATTTGTGTATGTATGTAC+AGG - chr1.3:10448386-10448405 MS.gene86287:CDS 30.0%
TAAATTCTGGATGAGGTAAA+TGG + chr1.3:10449112-10449131 None:intergenic 30.0%
! AGCTTTGCTAGTTTAAATTC+TGG + chr1.3:10449125-10449144 None:intergenic 30.0%
! CTTTGTTATAGCAATGACAA+AGG + chr1.3:10449652-10449671 None:intergenic 30.0%
!! TTTCCATGATTGTTTTGTTC+AGG - chr1.3:10448267-10448286 MS.gene86287:CDS 30.0%
AAACTGAAATGAATGGTTGC+AGG - chr1.3:10449312-10449331 MS.gene86287:CDS 35.0%
AACCAAACTGGTATAAGGTT+CGG + chr1.3:10448772-10448791 None:intergenic 35.0%
AACCGATTAAAACCTTGATC+GGG - chr1.3:10448871-10448890 MS.gene86287:intron 35.0%
AAGAATCTTCAGCAAGGAAT+TGG - chr1.3:10449534-10449553 MS.gene86287:intron 35.0%
ACTGATCTAATTGCTCTATC+AGG - chr1.3:10449179-10449198 MS.gene86287:intron 35.0%
ATAACAAAGCTTGGTCGAAT+CGG - chr1.3:10449663-10449682 MS.gene86287:CDS 35.0%
ATTGATCCATCACTTAATCG+TGG - chr1.3:10449408-10449427 MS.gene86287:CDS 35.0%
CAATTAGATCAGTAAGAGTG+AGG + chr1.3:10449172-10449191 None:intergenic 35.0%
CCAGCTAGTGAAAGATTAAT+AGG + chr1.3:10448468-10448487 None:intergenic 35.0%
CCTATTAATCTTTCACTAGC+TGG - chr1.3:10448465-10448484 MS.gene86287:CDS 35.0%
GAACCGATTAAAACCTTGAT+CGG - chr1.3:10448870-10448889 MS.gene86287:intron 35.0%
GTCATTGCTATAACAAAGCT+TGG - chr1.3:10449654-10449673 MS.gene86287:CDS 35.0%
TACTACAAGAATCTTCAGCA+AGG - chr1.3:10449528-10449547 MS.gene86287:intron 35.0%
TCAAATGTCCTAGGTGTAAT+AGG + chr1.3:10449501-10449520 None:intergenic 35.0%
TGACACAGTAATCAAAGCAA+AGG - chr1.3:10448497-10448516 MS.gene86287:CDS 35.0%
TGACCTGAACAAAACAATCA+TGG + chr1.3:10448273-10448292 None:intergenic 35.0%
TGTAATAGGATCCATGTCAA+TGG + chr1.3:10449487-10449506 None:intergenic 35.0%
TTACAACTTCAAAAGTGGGA+AGG - chr1.3:10449383-10449402 MS.gene86287:CDS 35.0%
! AGGTCAGTGTTCTATGTTTT+TGG - chr1.3:10448287-10448306 MS.gene86287:CDS 35.0%
! CATCTTTTGGACACACATTT+TGG + chr1.3:10449449-10449468 None:intergenic 35.0%
! GCTAGTTTAAATTCTGGATG+AGG + chr1.3:10449119-10449138 None:intergenic 35.0%
! TACTGGTTATCAAATGTCCT+AGG + chr1.3:10449510-10449529 None:intergenic 35.0%
! TAGTAAAGTTCGGTTCGAAA+AGG - chr1.3:10448678-10448697 MS.gene86287:CDS 35.0%
!! ATAGTTCTAGTGTGTTCGAT+TGG - chr1.3:10448723-10448742 MS.gene86287:CDS 35.0%
!! ATCAAGGTTTTAATCGGTTC+AGG + chr1.3:10448870-10448889 None:intergenic 35.0%
!!! AATTGCTTTTTCAGACAGGA+GGG - chr1.3:10449021-10449040 MS.gene86287:intron 35.0%
!!! TAATTGCTTTTTCAGACAGG+AGG - chr1.3:10449020-10449039 MS.gene86287:intron 35.0%
AAAAAGAGCCTAAGTGTAGC+AGG + chr1.3:10448250-10448269 None:intergenic 40.0%
AACTAGGGATGTCATAGCAT+TGG - chr1.3:10448584-10448603 MS.gene86287:intron 40.0%
AATCTTTCACTAGCTGGTGA+TGG - chr1.3:10448471-10448490 MS.gene86287:CDS 40.0%
ACATGGATCCTATTACACCT+AGG - chr1.3:10449490-10449509 MS.gene86287:intron 40.0%
ACCAAAATGTTTGCTTCGCA+TGG - chr1.3:10449146-10449165 MS.gene86287:intron 40.0%
CCATCTTATGCAGTAGAGTT+GGG - chr1.3:10449044-10449063 MS.gene86287:intron 40.0%
CTGATGCAAACAAGTTCACT+AGG + chr1.3:10449608-10449627 None:intergenic 40.0%
GCATATCCACGATTAAGTGA+TGG + chr1.3:10449417-10449436 None:intergenic 40.0%
GCTGAAGATTCTTGTAGTAC+TGG + chr1.3:10449527-10449546 None:intergenic 40.0%
TACCGAACCTTATACCAGTT+TGG - chr1.3:10448767-10448786 MS.gene86287:CDS 40.0%
TGTCGTGAATCAAACCAAAC+TGG + chr1.3:10448784-10448803 None:intergenic 40.0%
! TTGGACTGGAAACATGAAAC+TGG - chr1.3:10448742-10448761 MS.gene86287:CDS 40.0%
!! AGGTTTTAATCGGTTCAGGA+AGG + chr1.3:10448866-10448885 None:intergenic 40.0%
!! AGTCTAGGGTCAACATCTTT+TGG + chr1.3:10449462-10449481 None:intergenic 40.0%
!! ATGTGCTGACATTTTGGCAT+TGG - chr1.3:10448560-10448579 MS.gene86287:intron 40.0%
!! CAGCACATGAAACCTTGTTT+TGG + chr1.3:10448548-10448567 None:intergenic 40.0%
!! CTCCCGATCAAGGTTTTAAT+CGG + chr1.3:10448876-10448895 None:intergenic 40.0%
!! GGTTTCATGTGCTGACATTT+TGG - chr1.3:10448554-10448573 MS.gene86287:intron 40.0%
!!! ACATTTTGGCATTGGCAACT+AGG - chr1.3:10448568-10448587 MS.gene86287:intron 40.0%
!!! CATTTTGGCATTGGCAACTA+GGG - chr1.3:10448569-10448588 MS.gene86287:intron 40.0%
CCATGTCAATGGCAAGTCTA+GGG + chr1.3:10449476-10449495 None:intergenic 45.0%
CCCAACTCTACTGCATAAGA+TGG + chr1.3:10449047-10449066 None:intergenic 45.0%
CGATTAAAACCTTGATCGGG+AGG - chr1.3:10448874-10448893 MS.gene86287:intron 45.0%
CTTATGCAGTAGAGTTGGGA+CGG - chr1.3:10449048-10449067 MS.gene86287:intron 45.0%
GCCATCTTATGCAGTAGAGT+TGG - chr1.3:10449043-10449062 MS.gene86287:intron 45.0%
GGTGTCAAAACAGGAAGACA+GGG - chr1.3:10449684-10449703 MS.gene86287:CDS 45.0%
TCCATGTCAATGGCAAGTCT+AGG + chr1.3:10449477-10449496 None:intergenic 45.0%
TCTAGTGTGTTCGATTGGAC+TGG - chr1.3:10448728-10448747 MS.gene86287:CDS 45.0%
TTACAGCACCTGCTACACTT+AGG - chr1.3:10448239-10448258 MS.gene86287:CDS 45.0%
! ATCGGTTCAGGAAGGAAAAC+TGG + chr1.3:10448858-10448877 None:intergenic 45.0%
! GCCATGCGAAGCAAACATTT+TGG + chr1.3:10449150-10449169 None:intergenic 45.0%
CCCTAGACTTGCCATTGACA+TGG - chr1.3:10449473-10449492 MS.gene86287:intron 50.0%
GTCGTGTCTAGTGTCTGTGT+CGG - chr1.3:10448321-10448340 MS.gene86287:CDS 50.0%
TGTACCTGGCTGCCAAAACA+AGG - chr1.3:10448533-10448552 MS.gene86287:intron 50.0%
! CGGTGTCAAAACAGGAAGAC+AGG - chr1.3:10449683-10449702 MS.gene86287:CDS 50.0%
! GTTGCAGGAGCGCATACTAT+TGG - chr1.3:10449327-10449346 MS.gene86287:CDS 50.0%
!! GCTGCAGTTGATAGTGTACC+TGG - chr1.3:10448519-10448538 MS.gene86287:intron 50.0%
!! GGTCGAATCGGTGTCAAAAC+AGG - chr1.3:10449675-10449694 MS.gene86287:CDS 50.0%
!!! GAAACCTTGTTTTGGCAGCC+AGG + chr1.3:10448540-10448559 None:intergenic 50.0%
TAGAGTTGGGACGGCTCGAT+GGG - chr1.3:10449057-10449076 MS.gene86287:intron 55.0%
GTAGAGTTGGGACGGCTCGA+TGG - chr1.3:10449056-10449075 MS.gene86287:intron 60.0%
TGGGAGTAGCCTCCCGATCA+AGG + chr1.3:10448886-10448905 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 10448127 10449740 10448127 ID=MS.gene86287
chr1.3 mRNA 10448127 10449740 10448127 ID=MS.gene86287.t1;Parent=MS.gene86287
chr1.3 exon 10449590 10449740 10449590 ID=MS.gene86287.t1.exon1;Parent=MS.gene86287.t1
chr1.3 CDS 10449590 10449740 10449590 ID=cds.MS.gene86287.t1;Parent=MS.gene86287.t1
chr1.3 exon 10449262 10449434 10449262 ID=MS.gene86287.t1.exon2;Parent=MS.gene86287.t1
chr1.3 CDS 10449262 10449434 10449262 ID=cds.MS.gene86287.t1;Parent=MS.gene86287.t1
chr1.3 exon 10448667 10448832 10448667 ID=MS.gene86287.t1.exon3;Parent=MS.gene86287.t1
chr1.3 CDS 10448667 10448832 10448667 ID=cds.MS.gene86287.t1;Parent=MS.gene86287.t1
chr1.3 exon 10448127 10448533 10448127 ID=MS.gene86287.t1.exon4;Parent=MS.gene86287.t1
chr1.3 CDS 10448127 10448533 10448127 ID=cds.MS.gene86287.t1;Parent=MS.gene86287.t1
Gene Sequence

>MS.gene86287

ATGACTACTTGTAATGCAACAAAACTTAGAGTTGACTATTACAGAAACACATGTCCAAATGTTGAATCAATAGTCAAAAATGCAGTTGAGATGAAACTTCAGCAAACATTTGTTACAGCACCTGCTACACTTAGGCTCTTTTTCCATGATTGTTTTGTTCAGGTCAGTGTTCTATGTTTTTGGCATGTATTTGTGTCGTGTCTAGTGTCTGTGTCGGAGTCTGTGTTTTACATTAGTTGCTGTTAAACTTTATAATGATGTATTTGTGTATGTATGTACAGGGATGTGATGCTTCTGTGATGTTAGCTACAAGAAACAGCACTTCAGAAAAAGATAATCCTATTAATCTTTCACTAGCTGGTGATGGATTTGACACAGTAATCAAAGCAAAGGCTGCAGTTGATAGTGTACCTGGCTGCCAAAACAAGGTTTCATGTGCTGACATTTTGGCATTGGCAACTAGGGATGTCATAGCATTGGTAAATAAGCAACAATCATAATATAAAATTTTGTTTTTTTAACAATCCTAATATAAGTTAATCATTGCAATTTAGTAAAGTTCGGTTCGAAAAGGTATAGTTCAGTTTTCTGTAAAGATAGTTCTAGTGTGTTCGATTGGACTGGAAACATGAAACTGGTGTACCGAACCTTATACCAGTTTGGTTTGATTCACGACAAACCATTAAAAATTCTGTTCAGTTTTACTAAACTATTATAACGGTTCGGTTCCAGTTTTCCTTCCTGAACCGATTAAAACCTTGATCGGGAGGCTACTCCCATTTATAAGCAAATTTATAAAATATCATTCTTCTTATGGCTGATATTTATAACATTATTGAATAACTTTGGCCATGTAGATAATTGTAACATTGTTATTAGCTGAATACAAAAAATAATTGCTTTTTCAGACAGGAGGGCCATCTTATGCAGTAGAGTTGGGACGGCTCGATGGGAGAACATCTACAAAAGCAAGTGTGACAAACCATTTACCTCATCCAGAATTTAAACTAGCAAAGCTAACCAAAATGTTTGCTTCGCATGGCCTCACTCTTACTGATCTAATTGCTCTATCAGGTAGTTTATTCATAATTATGAGCAAAACTTGTTCGCTCGAGAATATGAGACTCGTTATTTAGGACTCGTTTATTGCAGATTAAAAAAAATGATTTTGATATTCAATAATTTAAACTGAAATGAATGGTTGCAGGAGCGCATACTATTGGATTCTCTCACTGCAGCCAATTTTCGAAACGAATTTACAACTTCAAAAGTGGGAAGGTAATTGATCCATCACTTAATCGTGGATATGCAAAACAGCTCCAAAATGTGTGTCCAAAAGATGTTGACCCTAGACTTGCCATTGACATGGATCCTATTACACCTAGGACATTTGATAACCAGTACTACAAGAATCTTCAGCAAGGAATTGGACTACTCTCTTCAGATCAATCTTTGTTTACTCATAAAAGTTCAAGAAACCTAGTGAACTTGTTTGCATCAGATAACACAGCCTTTGAAAGATCCTTTGTCATTGCTATAACAAAGCTTGGTCGAATCGGTGTCAAAACAGGAAGACAGGGCGAAATCAGACGCGATTGCTCGATGATTAACTGA
Protein sequence

>MS.gene86287.t1

MTTCNATKLRVDYYRNTCPNVESIVKNAVEMKLQQTFVTAPATLRLFFHDSTRNSTSEKDNPINLSLAGDGFDTVIKAKAAVDSVPGCQNKVSCADILALATRDVIALTGGPSYAVELGRLDGRTSTKASVTNHLPHPEFKLAKLTKMFASHGLTLTDLIALSGAHTIGFSHCSQFSKRIYNFKSGKVIDPSLNRGYAKQLQNVCPKDVDPRLAIDMDPITPRTFDNQYYKNLQQGIGLLSSDQSLFTHKSSRNLVNLFASDNTAFERSFVIAITKLGRIGVKTGRQGEIRRDCSMIN