Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86324.t1 | XP_013465770.1 | 97.7 | 484 | 8 | 1 | 1 | 484 | 1 | 481 | 8.10E-262 | 912.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86324.t1 | Q9SL95 | 63.8 | 437 | 142 | 3 | 41 | 475 | 25 | 447 | 1.3e-151 | 537.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86324.t1 | A0A072VDZ3 | 97.7 | 484 | 8 | 1 | 1 | 484 | 1 | 481 | 5.9e-262 | 912.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055204 | MS.gene86324 | 0.815348 | 9.68E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86324.t1 | MTR_1g010210 | 97.727 | 484 | 8 | 1 | 1 | 484 | 1 | 481 | 0.0 | 954 |
| MS.gene86324.t1 | MTR_3g464210 | 81.237 | 485 | 86 | 4 | 1 | 482 | 1 | 483 | 0.0 | 746 |
| MS.gene86324.t1 | MTR_1g010270 | 76.582 | 474 | 90 | 4 | 1 | 473 | 1 | 454 | 0.0 | 721 |
| MS.gene86324.t1 | MTR_3g108190 | 70.474 | 464 | 130 | 2 | 19 | 481 | 1 | 458 | 0.0 | 629 |
| MS.gene86324.t1 | MTR_4g011600 | 56.325 | 419 | 176 | 3 | 52 | 467 | 37 | 451 | 7.57e-166 | 477 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86324.t1 | AT2G25680 | 66.287 | 439 | 132 | 4 | 39 | 475 | 23 | 447 | 0.0 | 580 |
| MS.gene86324.t1 | AT1G80310 | 55.501 | 409 | 169 | 6 | 52 | 458 | 31 | 428 | 6.84e-140 | 410 |
Find 103 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTGTCTGCACTGCATCTT+TGG | 0.095650 | 1.3:+10000123 | None:intergenic |
| CTTCATCACTCCTTTGAATT+TGG | 0.127643 | 1.3:+9999420 | None:intergenic |
| GTAACTGAAAATTCCCTTTC+AGG | 0.152803 | 1.3:+9999128 | None:intergenic |
| GTTGTACATGAAATTAAATT+TGG | 0.217740 | 1.3:-9999287 | MS.gene86324:CDS |
| CTCTTTCTTCAAATTTAGTT+TGG | 0.243561 | 1.3:+9998669 | None:intergenic |
| TGATGAATTTAGTTGGTTCT+TGG | 0.259940 | 1.3:-9999082 | MS.gene86324:CDS |
| CTTTGTGTTGGGAATAGTTT+TGG | 0.270595 | 1.3:-9999330 | MS.gene86324:CDS |
| TCAAAATGGGCTGAAATTAA+TGG | 0.293645 | 1.3:-10000079 | MS.gene86324:CDS |
| GAAGTGATTTCATGAGCTTC+TGG | 0.293932 | 1.3:+10000184 | None:intergenic |
| CTTCCAAAGTCTAAATCTTT+AGG | 0.296255 | 1.3:-9999575 | MS.gene86324:CDS |
| TGAAATTCACTAAACAAAAT+TGG | 0.301984 | 1.3:-9999244 | MS.gene86324:CDS |
| GGAGGGTGTGTGGCACTTCT+TGG | 0.303917 | 1.3:-9998990 | MS.gene86324:CDS |
| ATCATCACTGGTGTCATATA+TGG | 0.310944 | 1.3:-9999845 | MS.gene86324:CDS |
| CTAGCAGGACAGTATAAATT+TGG | 0.316271 | 1.3:-9999023 | MS.gene86324:CDS |
| TGCTCCGGAAGATGGTAATT+TGG | 0.316459 | 1.3:-9999447 | MS.gene86324:CDS |
| AGACCTTGGTTTGGTTTAGA+TGG | 0.323003 | 1.3:-9999548 | MS.gene86324:CDS |
| CGCGGCAGCGATTGACTTCA+TGG | 0.332278 | 1.3:+9999802 | None:intergenic |
| TATTTGCACTGCTGTTTCAT+TGG | 0.337708 | 1.3:-9998805 | MS.gene86324:CDS |
| TTGGTTTGGTTTAGATGGTT+TGG | 0.344318 | 1.3:-9999543 | MS.gene86324:CDS |
| TTTGAATTGAAGGAGGGTTT+TGG | 0.351391 | 1.3:+10000215 | None:intergenic |
| TGCACTGCTGTTTCATTGGT+TGG | 0.352590 | 1.3:-9998801 | MS.gene86324:CDS |
| AGTGTCTGCACTGCATCTTT+GGG | 0.354736 | 1.3:+10000124 | None:intergenic |
| CTAAACCAAACCAAGGTCTT+TGG | 0.362770 | 1.3:+9999552 | None:intergenic |
| GCCTTATCAGACAAAGATTT+CGG | 0.369692 | 1.3:-9999779 | MS.gene86324:CDS |
| AATTTAGTTGGTTCTTGGTT+TGG | 0.373157 | 1.3:-9999077 | MS.gene86324:CDS |
| ATTCCCCTCACAACAGATAA+AGG | 0.381862 | 1.3:+9999662 | None:intergenic |
| CCATCCAAATTACCATCTTC+CGG | 0.384151 | 1.3:+9999443 | None:intergenic |
| ATTGACTTCATGGGCTGAAC+AGG | 0.399970 | 1.3:+9999812 | None:intergenic |
| ACTAAACAAAATTGGAAGAA+AGG | 0.400604 | 1.3:-9999236 | MS.gene86324:CDS |
| GGATCTGATGTTTGAATTGA+AGG | 0.402916 | 1.3:+10000205 | None:intergenic |
| ATAAACCACTTTCTACCATA+TGG | 0.403694 | 1.3:-9998704 | MS.gene86324:CDS |
| GTTGGATCAAGTGCTGCTCT+TGG | 0.405444 | 1.3:-9998783 | MS.gene86324:CDS |
| TGCAAAATTGGTATTGGGAT+TGG | 0.405472 | 1.3:-9998964 | MS.gene86324:CDS |
| CTTGTGGCTGAATGGTTTGT+TGG | 0.410139 | 1.3:+10000154 | None:intergenic |
| GGTGGCGTGCTCTTTGTTCT+CGG | 0.412718 | 1.3:-9999722 | MS.gene86324:CDS |
| CTCTTTGTTCTCGGTATCAC+AGG | 0.413494 | 1.3:-9999713 | MS.gene86324:CDS |
| TGGCCTAAAGATTTAGACTT+TGG | 0.414440 | 1.3:+9999572 | None:intergenic |
| TTCATTACTTCTATTGAAGA+TGG | 0.415265 | 1.3:+9999263 | None:intergenic |
| TGTTACTTAAGCTAAGGAAT+TGG | 0.417510 | 1.3:-9998734 | MS.gene86324:CDS |
| GTGCCAACTTGTCATGGTGC+TGG | 0.439717 | 1.3:-9999050 | MS.gene86324:CDS |
| ATCTTTGGGTTTGAAACTTG+TGG | 0.442751 | 1.3:+10000138 | None:intergenic |
| TAACTGAAAATTCCCTTTCA+GGG | 0.444301 | 1.3:+9999129 | None:intergenic |
| AACACACCTAAAATCCCAAC+TGG | 0.446139 | 1.3:+9998903 | None:intergenic |
| TAGTGGTTGTTGCGGTGCTC+CGG | 0.457719 | 1.3:-9999462 | MS.gene86324:CDS |
| GCCGAAATCTTTGTCTGATA+AGG | 0.459735 | 1.3:+9999778 | None:intergenic |
| GTTGGGTTGATGAATTTAGT+TGG | 0.465580 | 1.3:-9999089 | MS.gene86324:CDS |
| TTAGGCCAAAGACCTTGGTT+TGG | 0.469202 | 1.3:-9999557 | MS.gene86324:CDS |
| TATAAATTTGGTGGAAGAAG+TGG | 0.472717 | 1.3:-9999011 | MS.gene86324:CDS |
| ATTGTGATTGTTAATGGAGC+TGG | 0.477827 | 1.3:-9999494 | MS.gene86324:CDS |
| ATTCCAGCTGTCATTATCTC+TGG | 0.479556 | 1.3:+9999752 | None:intergenic |
| CATCAATTTCAGTGACAGTT+GGG | 0.484371 | 1.3:-9999106 | MS.gene86324:CDS |
| GTTTGAAACTTGTGGCTGAA+TGG | 0.492699 | 1.3:+10000146 | None:intergenic |
| AGAGTGAGAGCCAAGACTAT+AGG | 0.494228 | 1.3:+10000028 | None:intergenic |
| GTGGCTGAATGGTTTGTTGG+AGG | 0.495034 | 1.3:+10000157 | None:intergenic |
| AACATTGACAATGGAAGTTG+TGG | 0.498635 | 1.3:+9999194 | None:intergenic |
| AATGGTGCCATGGGTGATCT+TGG | 0.501937 | 1.3:-10000061 | MS.gene86324:CDS |
| GGTGCTGTGCCAACTTGTCA+TGG | 0.504890 | 1.3:-9999056 | MS.gene86324:CDS |
| ACATCAATTTCAGTGACAGT+TGG | 0.505075 | 1.3:-9999107 | MS.gene86324:CDS |
| AATCTTTAGGCCAAAGACCT+TGG | 0.514844 | 1.3:-9999562 | MS.gene86324:CDS |
| CATGGTGCTGGTGGACTAGC+AGG | 0.515807 | 1.3:-9999038 | MS.gene86324:CDS |
| TTTATGTGTTACTTAAGCTA+AGG | 0.517035 | 1.3:-9998740 | MS.gene86324:CDS |
| CCAACTTGTCATGGTGCTGG+TGG | 0.520067 | 1.3:-9999047 | MS.gene86324:CDS |
| CTGATGTTTGAATTGAAGGA+GGG | 0.521335 | 1.3:+10000209 | None:intergenic |
| GATTCCTTTATCTGTTGTGA+GGG | 0.522285 | 1.3:-9999666 | MS.gene86324:CDS |
| TACATATATACCTATAGTCT+TGG | 0.528025 | 1.3:-10000038 | MS.gene86324:CDS |
| ATTTGGATGGCCAAATTCAA+AGG | 0.528754 | 1.3:-9999430 | MS.gene86324:CDS |
| TAGTAAAGAAGATTCATTTG+TGG | 0.533352 | 1.3:-9998832 | MS.gene86324:CDS |
| TCAATGTGGTGCCAAGGTTG+AGG | 0.535731 | 1.3:+9999996 | None:intergenic |
| TGGTTCCATATGGTAGAAAG+TGG | 0.540368 | 1.3:+9998699 | None:intergenic |
| GGCTGAAATTAATGGTGCCA+TGG | 0.548607 | 1.3:-10000071 | MS.gene86324:CDS |
| GCGGCAGCGATTGACTTCAT+GGG | 0.552618 | 1.3:+9999803 | None:intergenic |
| CCGGAAGATGGTAATTTGGA+TGG | 0.556838 | 1.3:-9999443 | MS.gene86324:CDS |
| GCAGGACAGTATAAATTTGG+TGG | 0.559975 | 1.3:-9999020 | MS.gene86324:CDS |
| CAAATTCAAAGGAGTGATGA+AGG | 0.562407 | 1.3:-9999419 | MS.gene86324:CDS |
| TGTTGCGGTGCTCCGGAAGA+TGG | 0.568204 | 1.3:-9999455 | MS.gene86324:CDS |
| TGATTCCTTTATCTGTTGTG+AGG | 0.568857 | 1.3:-9999667 | MS.gene86324:CDS |
| ATGACAGCTGGAATCTTGAC+CGG | 0.569949 | 1.3:-9999743 | MS.gene86324:CDS |
| CCACCAGCACCATGACAAGT+TGG | 0.570149 | 1.3:+9999047 | None:intergenic |
| CTTGGCTCTCACTCTAGCTA+AGG | 0.577324 | 1.3:-10000020 | MS.gene86324:CDS |
| CATGAAGTCAATCGCTGCCG+CGG | 0.579851 | 1.3:-9999801 | MS.gene86324:CDS |
| AAATTTGGTGGAAGAAGTGG+AGG | 0.580866 | 1.3:-9999008 | MS.gene86324:CDS |
| ATTCCTTTATCTGTTGTGAG+GGG | 0.583159 | 1.3:-9999665 | MS.gene86324:CDS |
| CTAGCTAAGGACCTCAACCT+TGG | 0.586821 | 1.3:-10000007 | MS.gene86324:CDS |
| GGTGTCTACAACATCATCAC+TGG | 0.588180 | 1.3:-9999857 | MS.gene86324:CDS |
| TATCACAGGATTGATGCAGC+TGG | 0.589104 | 1.3:-9999699 | MS.gene86324:CDS |
| TCTGATGTTTGAATTGAAGG+AGG | 0.598428 | 1.3:+10000208 | None:intergenic |
| AATAAAACAAGCACAAACAA+TGG | 0.599249 | 1.3:+9999514 | None:intergenic |
| ACAAAGACTATAAAAGCAGA+AGG | 0.601245 | 1.3:+9999347 | None:intergenic |
| GTGCCAGAGATAATGACAGC+TGG | 0.605476 | 1.3:-9999755 | MS.gene86324:CDS |
| TGGAAGAAGTGGAGGGTGTG+TGG | 0.611929 | 1.3:-9999000 | MS.gene86324:CDS |
| GAGAACAAAGAGCACGCCAC+CGG | 0.612127 | 1.3:+9999724 | None:intergenic |
| ATCTTTGTCTGATAAGGCCG+CGG | 0.630622 | 1.3:+9999784 | None:intergenic |
| ACAGAGTTCAACATTGACAA+TGG | 0.640308 | 1.3:+9999185 | None:intergenic |
| GCTGAAATTAATGGTGCCAT+GGG | 0.646415 | 1.3:-10000070 | MS.gene86324:CDS |
| TTCATGGGCTGAACAGGCAT+AGG | 0.650381 | 1.3:+9999818 | None:intergenic |
| ATTCAAAGGAGTGATGAAGG+TGG | 0.653705 | 1.3:-9999416 | MS.gene86324:CDS |
| TGAAAATCAATGTGGTGCCA+AGG | 0.655634 | 1.3:+9999990 | None:intergenic |
| ATATGTACCAAGATCACCCA+TGG | 0.656064 | 1.3:+10000054 | None:intergenic |
| AGGGGAATTCAACTAGCACA+AGG | 0.671542 | 1.3:-9999647 | MS.gene86324:CDS |
| ACAGCTGGAATCTTGACCGG+TGG | 0.675343 | 1.3:-9999740 | MS.gene86324:CDS |
| AATTTGGTGGAAGAAGTGGA+GGG | 0.686532 | 1.3:-9999007 | MS.gene86324:CDS |
| AAACCATCTAAACCAAACCA+AGG | 0.711313 | 1.3:+9999545 | None:intergenic |
| TATACCGTTGAAAATCAATG+TGG | 0.718574 | 1.3:+9999982 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTGTACATGAAATTAAATT+TGG | - | chr1.3:9999619-9999638 | MS.gene86324:CDS | 20.0% |
| !! | TGAAATTCACTAAACAAAAT+TGG | - | chr1.3:9999662-9999681 | MS.gene86324:CDS | 20.0% |
| !!! | TGTTTTATTGTGATTGTTAA+TGG | - | chr1.3:9999406-9999425 | MS.gene86324:CDS | 20.0% |
| ! | AATAAAACAAGCACAAACAA+TGG | + | chr1.3:9999395-9999414 | None:intergenic | 25.0% |
| ! | ACTAAACAAAATTGGAAGAA+AGG | - | chr1.3:9999670-9999689 | MS.gene86324:CDS | 25.0% |
| ! | TACATATATACCTATAGTCT+TGG | - | chr1.3:9998868-9998887 | MS.gene86324:CDS | 25.0% |
| ! | TAGTAAAGAAGATTCATTTG+TGG | - | chr1.3:10000074-10000093 | MS.gene86324:CDS | 25.0% |
| ! | TTCATTACTTCTATTGAAGA+TGG | + | chr1.3:9999646-9999665 | None:intergenic | 25.0% |
| ! | TTTCTTATGTAATTCATGTC+CGG | - | chr1.3:9999017-9999036 | MS.gene86324:CDS | 25.0% |
| !!! | TGGAAGAAAGGTTTTATTAA+AGG | - | chr1.3:9999682-9999701 | MS.gene86324:CDS | 25.0% |
| !!! | TTTATGTGTTACTTAAGCTA+AGG | - | chr1.3:10000166-10000185 | MS.gene86324:CDS | 25.0% |
| ACAAAGACTATAAAAGCAGA+AGG | + | chr1.3:9999562-9999581 | None:intergenic | 30.0% | |
| ATAAACCACTTTCTACCATA+TGG | - | chr1.3:10000202-10000221 | MS.gene86324:CDS | 30.0% | |
| CTTCCAAAGTCTAAATCTTT+AGG | - | chr1.3:9999331-9999350 | MS.gene86324:CDS | 30.0% | |
| TAACTGAAAATTCCCTTTCA+GGG | + | chr1.3:9999780-9999799 | None:intergenic | 30.0% | |
| TATACCGTTGAAAATCAATG+TGG | + | chr1.3:9998927-9998946 | None:intergenic | 30.0% | |
| ! | AATTTAGTTGGTTCTTGGTT+TGG | - | chr1.3:9999829-9999848 | MS.gene86324:CDS | 30.0% |
| ! | GCTTTTATAGTCTTTGTGTT+GGG | - | chr1.3:9999565-9999584 | MS.gene86324:CDS | 30.0% |
| ! | GGTTTTGCAAAATTGGTATT+GGG | - | chr1.3:9999937-9999956 | MS.gene86324:intron | 30.0% |
| ! | TAATTTCAGCCCATTTTGAA+CGG | + | chr1.3:9998826-9998845 | None:intergenic | 30.0% |
| ! | TATAAATTTGGTGGAAGAAG+TGG | - | chr1.3:9999895-9999914 | MS.gene86324:intron | 30.0% |
| ! | TGATGAATTTAGTTGGTTCT+TGG | - | chr1.3:9999824-9999843 | MS.gene86324:CDS | 30.0% |
| ! | TGCTTTTATAGTCTTTGTGT+TGG | - | chr1.3:9999564-9999583 | MS.gene86324:CDS | 30.0% |
| ! | TGTTACTTAAGCTAAGGAAT+TGG | - | chr1.3:10000172-10000191 | MS.gene86324:CDS | 30.0% |
| !! | TCAAAATGGGCTGAAATTAA+TGG | - | chr1.3:9998827-9998846 | MS.gene86324:CDS | 30.0% |
| !! | TGGTTTTGCAAAATTGGTAT+TGG | - | chr1.3:9999936-9999955 | MS.gene86324:intron | 30.0% |
| !!! | ACTTCTTGGTTTTGCAAAAT+TGG | - | chr1.3:9999930-9999949 | MS.gene86324:intron | 30.0% |
| !!! | ACTTTGTTTTCCGTTCAAAA+TGG | - | chr1.3:9998813-9998832 | MS.gene86324:CDS | 30.0% |
| !!! | CTTTGTTTTCCGTTCAAAAT+GGG | - | chr1.3:9998814-9998833 | MS.gene86324:CDS | 30.0% |
| AAACCATCTAAACCAAACCA+AGG | + | chr1.3:9999364-9999383 | None:intergenic | 35.0% | |
| AACATTGACAATGGAAGTTG+TGG | + | chr1.3:9999715-9999734 | None:intergenic | 35.0% | |
| ACAGAGTTCAACATTGACAA+TGG | + | chr1.3:9999724-9999743 | None:intergenic | 35.0% | |
| ACATCAATTTCAGTGACAGT+TGG | - | chr1.3:9999799-9999818 | MS.gene86324:CDS | 35.0% | |
| ATTCCTTTATCTGTTGTGAG+GGG | - | chr1.3:9999241-9999260 | MS.gene86324:CDS | 35.0% | |
| ATTGTGATTGTTAATGGAGC+TGG | - | chr1.3:9999412-9999431 | MS.gene86324:CDS | 35.0% | |
| ATTTGGATGGCCAAATTCAA+AGG | - | chr1.3:9999476-9999495 | MS.gene86324:CDS | 35.0% | |
| CAAATTCAAAGGAGTGATGA+AGG | - | chr1.3:9999487-9999506 | MS.gene86324:CDS | 35.0% | |
| CAGAAAAATAGTGGTTGTTG+CGG | - | chr1.3:9999436-9999455 | MS.gene86324:CDS | 35.0% | |
| CATCAATTTCAGTGACAGTT+GGG | - | chr1.3:9999800-9999819 | MS.gene86324:CDS | 35.0% | |
| CTAGCAGGACAGTATAAATT+TGG | - | chr1.3:9999883-9999902 | MS.gene86324:intron | 35.0% | |
| CTGATGTTTGAATTGAAGGA+GGG | + | chr1.3:9998700-9998719 | None:intergenic | 35.0% | |
| CTTCATCACTCCTTTGAATT+TGG | + | chr1.3:9999489-9999508 | None:intergenic | 35.0% | |
| GATTCCTTTATCTGTTGTGA+GGG | - | chr1.3:9999240-9999259 | MS.gene86324:CDS | 35.0% | |
| GCCTTATCAGACAAAGATTT+CGG | - | chr1.3:9999127-9999146 | MS.gene86324:CDS | 35.0% | |
| GGATCTGATGTTTGAATTGA+AGG | + | chr1.3:9998704-9998723 | None:intergenic | 35.0% | |
| GTAACTGAAAATTCCCTTTC+AGG | + | chr1.3:9999781-9999800 | None:intergenic | 35.0% | |
| TCTGATGTTTGAATTGAAGG+AGG | + | chr1.3:9998701-9998720 | None:intergenic | 35.0% | |
| TGATTCCTTTATCTGTTGTG+AGG | - | chr1.3:9999239-9999258 | MS.gene86324:CDS | 35.0% | |
| TGGCCTAAAGATTTAGACTT+TGG | + | chr1.3:9999337-9999356 | None:intergenic | 35.0% | |
| ! | AACAGATCTTTTCCCTGAAA+GGG | - | chr1.3:9999765-9999784 | MS.gene86324:CDS | 35.0% |
| ! | ATCTTTGGGTTTGAAACTTG+TGG | + | chr1.3:9998771-9998790 | None:intergenic | 35.0% |
| ! | ATTTTGCAGCAATTTCCAGT+TGG | - | chr1.3:9999988-10000007 | MS.gene86324:CDS | 35.0% |
| ! | CAATTTCCAGTTGGGATTTT+AGG | - | chr1.3:9999997-10000016 | MS.gene86324:CDS | 35.0% |
| ! | CTTTGTGTTGGGAATAGTTT+TGG | - | chr1.3:9999576-9999595 | MS.gene86324:CDS | 35.0% |
| ! | TGCAAAATTGGTATTGGGAT+TGG | - | chr1.3:9999942-9999961 | MS.gene86324:intron | 35.0% |
| ! | TTTGAATTGAAGGAGGGTTT+TGG | + | chr1.3:9998694-9998713 | None:intergenic | 35.0% |
| ! | TTTTGCAGCAATTTCCAGTT+GGG | - | chr1.3:9999989-10000008 | MS.gene86324:CDS | 35.0% |
| !! | ATCATCACTGGTGTCATATA+TGG | - | chr1.3:9999061-9999080 | MS.gene86324:CDS | 35.0% |
| !! | GTTGGGTTGATGAATTTAGT+TGG | - | chr1.3:9999817-9999836 | MS.gene86324:CDS | 35.0% |
| !! | TATTTGCACTGCTGTTTCAT+TGG | - | chr1.3:10000101-10000120 | MS.gene86324:CDS | 35.0% |
| !! | TTGGTTTGGTTTAGATGGTT+TGG | - | chr1.3:9999363-9999382 | MS.gene86324:CDS | 35.0% |
| !!! | TTGGTATTGGGATTGGTTTT+AGG | - | chr1.3:9999949-9999968 | MS.gene86324:intron | 35.0% |
| AACACACCTAAAATCCCAAC+TGG | + | chr1.3:10000006-10000025 | None:intergenic | 40.0% | |
| AATCTTTAGGCCAAAGACCT+TGG | - | chr1.3:9999344-9999363 | MS.gene86324:CDS | 40.0% | |
| ATATGTACCAAGATCACCCA+TGG | + | chr1.3:9998855-9998874 | None:intergenic | 40.0% | |
| ATTCAAAGGAGTGATGAAGG+TGG | - | chr1.3:9999490-9999509 | MS.gene86324:CDS | 40.0% | |
| ATTCATGTCCGGAATCTTTC+AGG | - | chr1.3:9999028-9999047 | MS.gene86324:CDS | 40.0% | |
| ATTCCAGCTGTCATTATCTC+TGG | + | chr1.3:9999157-9999176 | None:intergenic | 40.0% | |
| ATTCCCCTCACAACAGATAA+AGG | + | chr1.3:9999247-9999266 | None:intergenic | 40.0% | |
| CCATCCAAATTACCATCTTC+CGG | + | chr1.3:9999466-9999485 | None:intergenic | 40.0% | |
| CTAAACCAAACCAAGGTCTT+TGG | + | chr1.3:9999357-9999376 | None:intergenic | 40.0% | |
| GAAGTGATTTCATGAGCTTC+TGG | + | chr1.3:9998725-9998744 | None:intergenic | 40.0% | |
| GCAGGACAGTATAAATTTGG+TGG | - | chr1.3:9999886-9999905 | MS.gene86324:intron | 40.0% | |
| GCCGAAATCTTTGTCTGATA+AGG | + | chr1.3:9999131-9999150 | None:intergenic | 40.0% | |
| TGGTTCCATATGGTAGAAAG+TGG | + | chr1.3:10000210-10000229 | None:intergenic | 40.0% | |
| TGTAGACACCTGAAAGATTC+CGG | + | chr1.3:9999039-9999058 | None:intergenic | 40.0% | |
| ! | AAATTTGGTGGAAGAAGTGG+AGG | - | chr1.3:9999898-9999917 | MS.gene86324:intron | 40.0% |
| ! | AATTTGGTGGAAGAAGTGGA+GGG | - | chr1.3:9999899-9999918 | MS.gene86324:intron | 40.0% |
| ! | CAACAGATCTTTTCCCTGAA+AGG | - | chr1.3:9999764-9999783 | MS.gene86324:CDS | 40.0% |
| ! | GTTTGAAACTTGTGGCTGAA+TGG | + | chr1.3:9998763-9998782 | None:intergenic | 40.0% |
| ! | TGAAAATCAATGTGGTGCCA+AGG | + | chr1.3:9998919-9998938 | None:intergenic | 40.0% |
| !! | AAGTGCTGCTCTTGGATTTT+TGG | - | chr1.3:10000131-10000150 | MS.gene86324:CDS | 40.0% |
| !! | AGACCTTGGTTTGGTTTAGA+TGG | - | chr1.3:9999358-9999377 | MS.gene86324:CDS | 40.0% |
| !! | CGCAACAACCACTATTTTTC+TGG | + | chr1.3:9999438-9999457 | None:intergenic | 40.0% |
| !! | GCTGAAATTAATGGTGCCAT+GGG | - | chr1.3:9998836-9998855 | MS.gene86324:CDS | 40.0% |
| !!! | GGCACCACATTGATTTTCAA+CGG | - | chr1.3:9998920-9998939 | MS.gene86324:CDS | 40.0% |
| !!! | GGTGTGTTACTTTTGTTTGC+TGG | - | chr1.3:10000018-10000037 | MS.gene86324:CDS | 40.0% |
| !!! | TGGACTTTTCTGGTTCCATA+TGG | + | chr1.3:10000220-10000239 | None:intergenic | 40.0% |
| AGAGTGAGAGCCAAGACTAT+AGG | + | chr1.3:9998881-9998900 | None:intergenic | 45.0% | |
| AGGGGAATTCAACTAGCACA+AGG | - | chr1.3:9999259-9999278 | MS.gene86324:CDS | 45.0% | |
| AGTGTCTGCACTGCATCTTT+GGG | + | chr1.3:9998785-9998804 | None:intergenic | 45.0% | |
| ATCTTTGTCTGATAAGGCCG+CGG | + | chr1.3:9999125-9999144 | None:intergenic | 45.0% | |
| ATGACAGCTGGAATCTTGAC+CGG | - | chr1.3:9999163-9999182 | MS.gene86324:CDS | 45.0% | |
| CCGGAAGATGGTAATTTGGA+TGG | - | chr1.3:9999463-9999482 | MS.gene86324:CDS | 45.0% | |
| CTCTTTGTTCTCGGTATCAC+AGG | - | chr1.3:9999193-9999212 | MS.gene86324:CDS | 45.0% | |
| GGTGTCTACAACATCATCAC+TGG | - | chr1.3:9999049-9999068 | MS.gene86324:CDS | 45.0% | |
| TATCACAGGATTGATGCAGC+TGG | - | chr1.3:9999207-9999226 | MS.gene86324:CDS | 45.0% | |
| TGCTCCGGAAGATGGTAATT+TGG | - | chr1.3:9999459-9999478 | MS.gene86324:CDS | 45.0% | |
| TTAGGCCAAAGACCTTGGTT+TGG | - | chr1.3:9999349-9999368 | MS.gene86324:CDS | 45.0% | |
| ! | ATTGACTTCATGGGCTGAAC+AGG | + | chr1.3:9999097-9999116 | None:intergenic | 45.0% |
| ! | CTTGTGGCTGAATGGTTTGT+TGG | + | chr1.3:9998755-9998774 | None:intergenic | 45.0% |
| ! | GGCTGAAATTAATGGTGCCA+TGG | - | chr1.3:9998835-9998854 | MS.gene86324:CDS | 45.0% |
| !! | TGCACTGCTGTTTCATTGGT+TGG | - | chr1.3:10000105-10000124 | MS.gene86324:CDS | 45.0% |
| !!! | GCTGCTCTTGGATTTTTGGT+TGG | - | chr1.3:10000135-10000154 | MS.gene86324:CDS | 45.0% |
| CAGTGTCTGCACTGCATCTT+TGG | + | chr1.3:9998786-9998805 | None:intergenic | 50.0% | |
| CTAGCTAAGGACCTCAACCT+TGG | - | chr1.3:9998899-9998918 | MS.gene86324:CDS | 50.0% | |
| GGAGCTGGCCAGAAAAATAG+TGG | - | chr1.3:9999427-9999446 | MS.gene86324:CDS | 50.0% | |
| GTGCCAGAGATAATGACAGC+TGG | - | chr1.3:9999151-9999170 | MS.gene86324:CDS | 50.0% | |
| ! | CTTGGCTCTCACTCTAGCTA+AGG | - | chr1.3:9998886-9998905 | MS.gene86324:CDS | 50.0% |
| ! | GTTGGATCAAGTGCTGCTCT+TGG | - | chr1.3:10000123-10000142 | MS.gene86324:CDS | 50.0% |
| ! | TCAATGTGGTGCCAAGGTTG+AGG | + | chr1.3:9998913-9998932 | None:intergenic | 50.0% |
| ! | TTCATGGGCTGAACAGGCAT+AGG | + | chr1.3:9999091-9999110 | None:intergenic | 50.0% |
| !! | AATGGTGCCATGGGTGATCT+TGG | - | chr1.3:9998845-9998864 | MS.gene86324:CDS | 50.0% |
| !! | GTGGCTGAATGGTTTGTTGG+AGG | + | chr1.3:9998752-9998771 | None:intergenic | 50.0% |
| ACAGCTGGAATCTTGACCGG+TGG | - | chr1.3:9999166-9999185 | MS.gene86324:CDS | 55.0% | |
| CATGAAGTCAATCGCTGCCG+CGG | - | chr1.3:9999105-9999124 | MS.gene86324:CDS | 55.0% | |
| CCACCAGCACCATGACAAGT+TGG | + | chr1.3:9999862-9999881 | None:intergenic | 55.0% | |
| GGTGGCGTGCTCTTTGTTCT+CGG | - | chr1.3:9999184-9999203 | MS.gene86324:CDS | 55.0% | |
| GTGCCAACTTGTCATGGTGC+TGG | - | chr1.3:9999856-9999875 | MS.gene86324:CDS | 55.0% | |
| TAGTGGTTGTTGCGGTGCTC+CGG | - | chr1.3:9999444-9999463 | MS.gene86324:CDS | 55.0% | |
| ! | CCAACTTGTCATGGTGCTGG+TGG | - | chr1.3:9999859-9999878 | MS.gene86324:CDS | 55.0% |
| ! | GAGAACAAAGAGCACGCCAC+CGG | + | chr1.3:9999185-9999204 | None:intergenic | 55.0% |
| ! | GCGGCAGCGATTGACTTCAT+GGG | + | chr1.3:9999106-9999125 | None:intergenic | 55.0% |
| ! | GGTGCTGTGCCAACTTGTCA+TGG | - | chr1.3:9999850-9999869 | MS.gene86324:CDS | 55.0% |
| ! | TGGAAGAAGTGGAGGGTGTG+TGG | - | chr1.3:9999906-9999925 | MS.gene86324:intron | 55.0% |
| TGTTGCGGTGCTCCGGAAGA+TGG | - | chr1.3:9999451-9999470 | MS.gene86324:CDS | 60.0% | |
| ! | CGCGGCAGCGATTGACTTCA+TGG | + | chr1.3:9999107-9999126 | None:intergenic | 60.0% |
| ! | GGAGGGTGTGTGGCACTTCT+TGG | - | chr1.3:9999916-9999935 | MS.gene86324:intron | 60.0% |
| !! | CATGGTGCTGGTGGACTAGC+AGG | - | chr1.3:9999868-9999887 | MS.gene86324:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 9998683 | 10000245 | 9998683 | ID=MS.gene86324 |
| chr1.3 | mRNA | 9998683 | 10000245 | 9998683 | ID=MS.gene86324.t1;Parent=MS.gene86324 |
| chr1.3 | exon | 9999987 | 10000245 | 9999987 | ID=MS.gene86324.t1.exon1;Parent=MS.gene86324.t1 |
| chr1.3 | CDS | 9999987 | 10000245 | 9999987 | ID=cds.MS.gene86324.t1;Parent=MS.gene86324.t1 |
| chr1.3 | exon | 9998683 | 9999878 | 9998683 | ID=MS.gene86324.t1.exon2;Parent=MS.gene86324.t1 |
| chr1.3 | CDS | 9998683 | 9999878 | 9998683 | ID=cds.MS.gene86324.t1;Parent=MS.gene86324.t1 |
| Gene Sequence |
| Protein sequence |
