AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene86349

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene86349.t1 MTR_2g103170 98.857 350 4 0 5 354 24 373 0.0 715
MS.gene86349.t1 MTR_1g011800 68.588 347 103 2 5 350 35 376 6.84e-179 501
MS.gene86349.t1 MTR_0045s0110 50.893 336 159 2 7 342 32 361 2.67e-120 352
MS.gene86349.t1 MTR_4g039740 50.898 334 158 2 9 342 34 361 1.41e-116 342
MS.gene86349.t1 MTR_4g039720 50.299 334 160 2 9 342 38 365 5.39e-116 341
MS.gene86349.t1 MTR_4g039680 48.204 334 167 2 9 342 34 361 1.65e-111 329
MS.gene86349.t1 MTR_2g019600 46.356 343 179 1 2 344 28 365 4.27e-110 327
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene86349.t1 AT5G11420 67.052 346 109 1 5 350 26 366 9.00e-178 498
MS.gene86349.t1 AT5G25460 67.630 346 107 1 5 350 29 369 1.01e-176 495
MS.gene86349.t1 AT4G32460 67.341 346 108 1 5 350 25 365 4.94e-174 488
MS.gene86349.t1 AT4G32460 67.341 346 108 1 5 350 25 365 4.94e-174 488
MS.gene86349.t1 AT1G80240 66.181 343 111 1 5 347 28 365 2.45e-167 471
MS.gene86349.t1 AT4G32460 66.970 330 104 1 21 350 1 325 2.46e-164 462
MS.gene86349.t1 AT4G32460 66.970 330 104 1 21 350 1 325 2.46e-164 462
MS.gene86349.t1 AT3G08030 52.786 341 156 1 2 342 24 359 8.03e-123 358
MS.gene86349.t1 AT2G41800 50.000 344 167 1 5 348 32 370 1.59e-120 352
MS.gene86349.t1 AT3G08030 53.106 322 146 1 21 342 1 317 6.20e-117 342
MS.gene86349.t1 AT2G41810 48.974 341 169 1 5 345 32 367 9.36e-117 343
MS.gene86349.t1 AT2G34510 47.353 340 179 0 5 344 39 378 5.12e-111 329
MS.gene86349.t1 AT1G29980 44.477 344 187 1 5 344 3 346 7.93e-107 318
MS.gene86349.t1 AT1G29980 44.477 344 187 1 5 344 39 382 2.09e-106 318
MS.gene86349.t1 AT2G34510 47.603 292 153 0 53 344 1 292 1.50e-96 290
MS.gene86349.t1 AT5G14150 32.597 362 203 13 2 344 18 357 1.13e-41 150
MS.gene86349.t1 AT5G14150 32.597 362 203 13 2 344 18 357 1.13e-41 150

Find 83 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTTTAGGTTTGATGCTTT+TGG 0.196530 2.3:+1752217 None:intergenic
TCAAGTTCCTTATCAATCTA+AGG 0.227907 2.3:-1750857 MS.gene86349:CDS
TTGTCACTACTGTGCCCTTT+AGG 0.246643 2.3:+1752203 None:intergenic
TGGATAACAATTTCCCCTTC+TGG 0.270997 2.3:+1751848 None:intergenic
AAATTACCTCTGGTTCTTCT+AGG 0.274083 2.3:+1751752 None:intergenic
TATTGATTCTGTTGCCTTGA+AGG 0.280632 2.3:-1751786 MS.gene86349:CDS
CCCATGATGCCATACCTAAT+TGG 0.285226 2.3:-1752180 MS.gene86349:CDS
ATACCTAATTGGACAGTTTC+AGG 0.305431 2.3:-1752169 MS.gene86349:CDS
TATCCTGAAACTGTCCAATT+AGG 0.329626 2.3:+1752166 None:intergenic
AAAACAAGGTGACATGCTTT+TGG 0.342997 2.3:-1752119 MS.gene86349:CDS
ACTTCTGAGAAAAGAGATTA+TGG 0.344578 2.3:-1751944 MS.gene86349:CDS
GGTAAAGGAGGGTTTGTTAG+AGG 0.345986 2.3:-1750835 MS.gene86349:CDS
CAAGAAGTCTTCACCACAAT+TGG 0.356227 2.3:-1750973 MS.gene86349:CDS
AATACTCCCCATGATGCATT+TGG 0.357606 2.3:+1751150 None:intergenic
ACCAGAGTTATCATTCTTCA+TGG 0.360617 2.3:+1750750 None:intergenic
ATTACTTAGGTATGCTTGTT+GGG 0.366782 2.3:+1750676 None:intergenic
CATTACTTAGGTATGCTTGT+TGG 0.371408 2.3:+1750675 None:intergenic
GATAACTCTGGTTCTCTTTG+TGG 0.379593 2.3:-1750739 MS.gene86349:CDS
CTACCATACATAGTTTGTAT+AGG 0.394483 2.3:+1751914 None:intergenic
CCTTTACCCTTAGATTGATA+AGG 0.394959 2.3:+1750850 None:intergenic
TCCAATTAGGTATGGCATCA+TGG 0.399317 2.3:+1752179 None:intergenic
CATCTTCAACACCAGAGTTA+TGG 0.410007 2.3:+1751828 None:intergenic
CTAACAGCATAAGCACCTTC+TGG 0.410744 2.3:+1752091 None:intergenic
CAGAAGGTGCTTATGCTGTT+AGG 0.416893 2.3:-1752090 MS.gene86349:CDS
GTTGGGAATCATTTGCTTGT+GGG 0.420479 2.3:-1751886 MS.gene86349:CDS
CGACAAGACGTACTAGGATT+AGG 0.425557 2.3:-1750792 MS.gene86349:CDS
CTTTCAGGTTTATTGCCAAA+TGG 0.445556 2.3:-1752256 MS.gene86349:intron
TACGTTGAATACATAAAATC+AGG 0.449032 2.3:-1752145 MS.gene86349:CDS
CCAACTTCAAAGTCACCATT+TGG 0.454460 2.3:+1752241 None:intergenic
TCATGGTGTAAAATGTACTT+AGG 0.454825 2.3:+1750767 None:intergenic
GATGCATTTGGGAACACATA+TGG 0.455308 2.3:+1751162 None:intergenic
AGGCTACGACAAGACGTACT+AGG 0.457315 2.3:-1750798 MS.gene86349:CDS
TCAACTATCCATCCTGGTAA+TGG 0.458492 2.3:+1751096 None:intergenic
ATACTCCCCATGATGCATTT+GGG 0.460441 2.3:+1751151 None:intergenic
ATGACTGTAGAAGCATTTGC+TGG 0.463295 2.3:-1750892 MS.gene86349:CDS
TACCTCTGGTTCTTCTAGGT+GGG 0.470065 2.3:+1751756 None:intergenic
ATTCCTATACAAACTATGTA+TGG 0.484043 2.3:-1751917 MS.gene86349:CDS
CCAAAAGCATCAAACCTAAA+GGG 0.488419 2.3:-1752217 MS.gene86349:CDS
GATGCTCATGGTCCATTACC+AGG 0.489743 2.3:-1751108 MS.gene86349:CDS
TCAATAAGTGGGCCACAAGC+TGG 0.490288 2.3:+1751803 None:intergenic
CCAAATGGTGACTTTGAAGT+TGG 0.493192 2.3:-1752241 MS.gene86349:CDS
ATGTGTTCCCAAATGCATCA+TGG 0.495027 2.3:-1751158 MS.gene86349:CDS
TCCAAAAGCATCAAACCTAA+AGG 0.497345 2.3:-1752218 MS.gene86349:CDS
CCAATTAGGTATGGCATCAT+GGG 0.500399 2.3:+1752180 None:intergenic
GGAGCAATTGAACTTGTAGC+AGG 0.500704 2.3:-1751015 MS.gene86349:CDS
TATGTATGGTAGCAATGGTT+GGG 0.503190 2.3:-1751903 MS.gene86349:CDS
AGGTGGGTTCAAAACCTTCA+AGG 0.507765 2.3:+1751772 None:intergenic
GGTTGGGAATCATTTGCTTG+TGG 0.513196 2.3:-1751887 MS.gene86349:CDS
TGTGTTCCCAAATGCATCAT+GGG 0.517111 2.3:-1751157 MS.gene86349:CDS
CCTTATCAATCTAAGGGTAA+AGG 0.522665 2.3:-1750850 MS.gene86349:CDS
CTATGTATGGTAGCAATGGT+TGG 0.523113 2.3:-1751904 MS.gene86349:CDS
CAAGTTCCTTATCAATCTAA+GGG 0.527075 2.3:-1750856 MS.gene86349:CDS
TTACCTCTGGTTCTTCTAGG+TGG 0.537982 2.3:+1751755 None:intergenic
AGAGATTCAACTATCCATCC+TGG 0.540762 2.3:+1751090 None:intergenic
GAAATTGTTATCCATAACTC+TGG 0.550258 2.3:-1751839 MS.gene86349:CDS
AAGGCAACAGAATCAATAAG+TGG 0.552750 2.3:+1751791 None:intergenic
TGAAACTGTCCAATTAGGTA+TGG 0.554450 2.3:+1752171 None:intergenic
TATCAATCTAAGGGTAAAGG+AGG 0.563985 2.3:-1750847 MS.gene86349:CDS
CAAACTATGTATGGTAGCAA+TGG 0.573939 2.3:-1751908 MS.gene86349:CDS
TTTAGAGCTGATTATCCAGA+AGG 0.574156 2.3:-1751863 MS.gene86349:CDS
TTCACAGTACCAGAAGGAAA+AGG 0.574832 2.3:-1751036 MS.gene86349:CDS
GGTGCTTATGCTGTTAGGCT+AGG 0.577781 2.3:-1752085 MS.gene86349:CDS
CTCATGGTCCATTACCAGGA+TGG 0.588455 2.3:-1751104 MS.gene86349:CDS
GTTGAAGATGATCCAGCTTG+TGG 0.588645 2.3:-1751815 MS.gene86349:CDS
TCTCTTCACATGGCTTACAA+AGG 0.593441 2.3:-1752556 None:intergenic
ATTGATCCCACCACACATTG+AGG 0.605497 2.3:-1751130 MS.gene86349:CDS
TAGAGCTGATTATCCAGAAG+GGG 0.606448 2.3:-1751861 MS.gene86349:CDS
ATCAATCTAAGGGTAAAGGA+GGG 0.613771 2.3:-1750846 MS.gene86349:CDS
GAGCATCCTCAATGTGTGGT+GGG 0.618690 2.3:+1751124 None:intergenic
AGAGAAACTTAATGTGTCAG+TGG 0.619664 2.3:-1751972 MS.gene86349:CDS
CCACACATTGAGGATGCTCA+TGG 0.621467 2.3:-1751120 MS.gene86349:CDS
TTAGAGCTGATTATCCAGAA+GGG 0.629847 2.3:-1751862 MS.gene86349:CDS
GCGAGCTGCACTGAATGTGA+TGG 0.634750 2.3:+1752009 None:intergenic
GAGCAATTGAACTTGTAGCA+GGG 0.637579 2.3:-1751014 MS.gene86349:CDS
AGGCAACAGAATCAATAAGT+GGG 0.639484 2.3:+1751792 None:intergenic
TGAGCATCCTCAATGTGTGG+TGG 0.646759 2.3:+1751123 None:intergenic
GAACACTTCACAGTACCAGA+AGG 0.657571 2.3:-1751042 MS.gene86349:CDS
CATCACCAACTGCAAAAGTG+AGG 0.664865 2.3:+1750938 None:intergenic
GATGCTAATAATGCATGTGA+AGG 0.670003 2.3:-1750919 MS.gene86349:CDS
GTGTTCCCAAATGCATCATG+GGG 0.678543 2.3:-1751156 MS.gene86349:CDS
ACCATGAAGAATGATAACTC+TGG 0.691442 2.3:-1750751 MS.gene86349:CDS
CCATGAGCATCCTCAATGTG+TGG 0.691876 2.3:+1751120 None:intergenic
AACCCACCTAGAAGAACCAG+AGG 0.693541 2.3:-1751758 MS.gene86349:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAAAATATTCAATCATAT+TGG + chr2.3:1751883-1751902 None:intergenic 15.0%
!! TTGATGTATGAAATTAAATT+TGG - chr2.3:1751970-1751989 MS.gene86349:CDS 15.0%
!!! CAACTTTTATTTATATATCT+AGG - chr2.3:1750783-1750802 MS.gene86349:CDS 15.0%
!!! GAAAGAATTTTAAATTGATA+AGG + chr2.3:1750957-1750976 None:intergenic 15.0%
!!! TATATTTTCCACAAAAAAAA+AGG + chr2.3:1750822-1750841 None:intergenic 15.0%
!!! TATCAATTTAAAATTCTTTC+AGG - chr2.3:1750957-1750976 MS.gene86349:CDS 15.0%
!!! TTTTTTTTTGTGGAAAATAT+AGG - chr2.3:1750821-1750840 MS.gene86349:CDS 15.0%
!! AAAAAGTGAAGCTTAATAAA+GGG - chr2.3:1751186-1751205 MS.gene86349:CDS 20.0%
!! ATTCTTAATTTAATGCAAAG+AGG - chr2.3:1751937-1751956 MS.gene86349:CDS 20.0%
!! TAGTAAAATACAATTAAGCT+AGG + chr2.3:1751573-1751592 None:intergenic 20.0%
!! TGTATACAAATTTAGATACA+TGG + chr2.3:1751527-1751546 None:intergenic 20.0%
!!! AATTGTTGTTTTTGTTTGTT+TGG - chr2.3:1752003-1752022 MS.gene86349:CDS 20.0%
!!! AATTTTACATCATCAATAAC+AGG + chr2.3:1752516-1752535 None:intergenic 20.0%
!!! AGAAAAATTTTCCTATCATA+AGG - chr2.3:1750858-1750877 MS.gene86349:CDS 20.0%
!!! GTTTCCATTTTTCAATAAAT+TGG + chr2.3:1752034-1752053 None:intergenic 20.0%
!!! TATGTATACCTTTTTTTTTG+TGG - chr2.3:1750811-1750830 MS.gene86349:CDS 20.0%
! AATTGTTTGAACCTTATGAT+AGG + chr2.3:1750872-1750891 None:intergenic 25.0%
! ACTCCATACATGTAATTAAA+CGG - chr2.3:1751856-1751875 MS.gene86349:CDS 25.0%
! ATAAAATCAGGACAAAAACA+AGG - chr2.3:1751095-1751114 MS.gene86349:CDS 25.0%
! ATTCCTATACAAACTATGTA+TGG - chr2.3:1751311-1751330 MS.gene86349:intron 25.0%
! CAAAAAGTGAAGCTTAATAA+AGG - chr2.3:1751185-1751204 MS.gene86349:CDS 25.0%
! GCATATATTTATGATGTGTT+TGG - chr2.3:1751737-1751756 MS.gene86349:intron 25.0%
! TACGTTGAATACATAAAATC+AGG - chr2.3:1751083-1751102 MS.gene86349:CDS 25.0%
!! AAAAATGGAAACTTTGAAGA+AGG - chr2.3:1752042-1752061 MS.gene86349:CDS 25.0%
CAAGTTCCTTATCAATCTAA+GGG - chr2.3:1752372-1752391 MS.gene86349:intron 30.0%
GAAATTGTTATCCATAACTC+TGG - chr2.3:1751389-1751408 MS.gene86349:intron 30.0%
GCAGCCAATTTATTGAAAAA+TGG - chr2.3:1752027-1752046 MS.gene86349:CDS 30.0%
TCAAGTTCCTTATCAATCTA+AGG - chr2.3:1752371-1752390 MS.gene86349:intron 30.0%
TCATGGTGTAAAATGTACTT+AGG + chr2.3:1752464-1752483 None:intergenic 30.0%
TTAACATGTTCCTTATCACA+TGG - chr2.3:1750722-1750741 MS.gene86349:CDS 30.0%
TTATGATGTGTTTGGATTGA+CGG - chr2.3:1751745-1751764 MS.gene86349:intron 30.0%
! ACTTCTGAGAAAAGAGATTA+TGG - chr2.3:1751284-1751303 MS.gene86349:intron 30.0%
! ATGGACATGTACTTTTATGT+AGG + chr2.3:1751508-1751527 None:intergenic 30.0%
! CTACCATACATAGTTTGTAT+AGG + chr2.3:1751317-1751336 None:intergenic 30.0%
! GACATAAACTTTTCCAATTG+TGG + chr2.3:1752271-1752290 None:intergenic 30.0%
! GTTAATGTGATTTTCGCAAT+TGG - chr2.3:1751791-1751810 MS.gene86349:CDS 30.0%
! TAATCTCTTTTCTCAGAAGT+TGG + chr2.3:1751284-1751303 None:intergenic 30.0%
! TGGACATGTACTTTTATGTA+GGG + chr2.3:1751507-1751526 None:intergenic 30.0%
!!! TCTTTTTCAAGAGCACTTTT+TGG + chr2.3:1750758-1750777 None:intergenic 30.0%
AAGGCAACAGAATCAATAAG+TGG + chr2.3:1751440-1751459 None:intergenic 35.0%
ACCAGAGTTATCATTCTTCA+TGG + chr2.3:1752481-1752500 None:intergenic 35.0%
ACCATGAAGAATGATAACTC+TGG - chr2.3:1752477-1752496 MS.gene86349:intron 35.0%
AGAGAAACTTAATGTGTCAG+TGG - chr2.3:1751256-1751275 MS.gene86349:intron 35.0%
AGGAACATGTTAATAAGTGC+AGG + chr2.3:1750715-1750734 None:intergenic 35.0%
AGGCAACAGAATCAATAAGT+GGG + chr2.3:1751439-1751458 None:intergenic 35.0%
ATACCTAATTGGACAGTTTC+AGG - chr2.3:1751059-1751078 MS.gene86349:CDS 35.0%
ATCAATCTAAGGGTAAAGGA+GGG - chr2.3:1752382-1752401 MS.gene86349:intron 35.0%
CAAACTATGTATGGTAGCAA+TGG - chr2.3:1751320-1751339 MS.gene86349:intron 35.0%
CCTTATCAATCTAAGGGTAA+AGG - chr2.3:1752378-1752397 MS.gene86349:intron 35.0%
CCTTTACCCTTAGATTGATA+AGG + chr2.3:1752381-1752400 None:intergenic 35.0%
GATGCTAATAATGCATGTGA+AGG - chr2.3:1752309-1752328 MS.gene86349:intron 35.0%
GGACCGTTTAATTACATGTA+TGG + chr2.3:1751862-1751881 None:intergenic 35.0%
GTGGAAAATATAGGTCTCAT+GGG - chr2.3:1750830-1750849 MS.gene86349:CDS 35.0%
TAGGGAACAAAAATTACCTC+TGG + chr2.3:1751489-1751508 None:intergenic 35.0%
TATCAATCTAAGGGTAAAGG+AGG - chr2.3:1752381-1752400 MS.gene86349:intron 35.0%
TATCCTGAAACTGTCCAATT+AGG + chr2.3:1751065-1751084 None:intergenic 35.0%
TATGTATGGTAGCAATGGTT+GGG - chr2.3:1751325-1751344 MS.gene86349:intron 35.0%
TGAAACTGTCCAATTAGGTA+TGG + chr2.3:1751060-1751079 None:intergenic 35.0%
TGGAAAATATAGGTCTCATG+GGG - chr2.3:1750831-1750850 MS.gene86349:CDS 35.0%
TGTGGAAAATATAGGTCTCA+TGG - chr2.3:1750829-1750848 MS.gene86349:CDS 35.0%
TTAGAGCTGATTATCCAGAA+GGG - chr2.3:1751366-1751385 MS.gene86349:intron 35.0%
! AAAACAAGGTGACATGCTTT+TGG - chr2.3:1751109-1751128 MS.gene86349:CDS 35.0%
! TAGAGGCAAACTTCGTTTTA+AGG - chr2.3:1752410-1752429 MS.gene86349:intron 35.0%
! TTTAGAGCTGATTATCCAGA+AGG - chr2.3:1751365-1751384 MS.gene86349:intron 35.0%
!! AAATTACCTCTGGTTCTTCT+AGG + chr2.3:1751479-1751498 None:intergenic 35.0%
!! CCAAAAGCATCAAACCTAAA+GGG - chr2.3:1751011-1751030 MS.gene86349:CDS 35.0%
!! CTTTCAGGTTTATTGCCAAA+TGG - chr2.3:1750972-1750991 MS.gene86349:CDS 35.0%
!! TATTGATTCTGTTGCCTTGA+AGG - chr2.3:1751442-1751461 MS.gene86349:intron 35.0%
!! TCCAAAAGCATCAAACCTAA+AGG - chr2.3:1751010-1751029 MS.gene86349:CDS 35.0%
AATACTCCCCATGATGCATT+TGG + chr2.3:1752081-1752100 None:intergenic 40.0%
ACATGTTCCTTATCACATGG+TGG - chr2.3:1750725-1750744 MS.gene86349:CDS 40.0%
AGAGATTCAACTATCCATCC+TGG + chr2.3:1752141-1752160 None:intergenic 40.0%
ATACTCCCCATGATGCATTT+GGG + chr2.3:1752080-1752099 None:intergenic 40.0%
ATGTGTTCCCAAATGCATCA+TGG - chr2.3:1752070-1752089 MS.gene86349:CDS 40.0%
ATGTTAATAAGTGCAGGCTG+TGG + chr2.3:1750709-1750728 None:intergenic 40.0%
CAAGAAGTCTTCACCACAAT+TGG - chr2.3:1752255-1752274 MS.gene86349:intron 40.0%
CATCTTCAACACCAGAGTTA+TGG + chr2.3:1751403-1751422 None:intergenic 40.0%
CCAACTTCAAAGTCACCATT+TGG + chr2.3:1750990-1751009 None:intergenic 40.0%
CCAATTAGGTATGGCATCAT+GGG + chr2.3:1751051-1751070 None:intergenic 40.0%
CTATGTATGGTAGCAATGGT+TGG - chr2.3:1751324-1751343 MS.gene86349:intron 40.0%
GAGCAATTGAACTTGTAGCA+GGG - chr2.3:1752214-1752233 MS.gene86349:CDS 40.0%
GATGCATTTGGGAACACATA+TGG + chr2.3:1752069-1752088 None:intergenic 40.0%
GTTGGGAATCATTTGCTTGT+GGG - chr2.3:1751342-1751361 MS.gene86349:intron 40.0%
TAGAGCTGATTATCCAGAAG+GGG - chr2.3:1751367-1751386 MS.gene86349:intron 40.0%
TCAACTATCCATCCTGGTAA+TGG + chr2.3:1752135-1752154 None:intergenic 40.0%
TCCAATTAGGTATGGCATCA+TGG + chr2.3:1751052-1751071 None:intergenic 40.0%
TCTTGTTCCACCATGTGATA+AGG + chr2.3:1750735-1750754 None:intergenic 40.0%
TGGATAACAATTTCCCCTTC+TGG + chr2.3:1751383-1751402 None:intergenic 40.0%
TGTGTTCCCAAATGCATCAT+GGG - chr2.3:1752071-1752090 MS.gene86349:CDS 40.0%
TGTTAATAAGTGCAGGCTGT+GGG + chr2.3:1750708-1750727 None:intergenic 40.0%
TTCACAGTACCAGAAGGAAA+AGG - chr2.3:1752192-1752211 MS.gene86349:CDS 40.0%
! TCAATTGCTCCTTTTCCTTC+TGG + chr2.3:1752204-1752223 None:intergenic 40.0%
!! ATGACTGTAGAAGCATTTGC+TGG - chr2.3:1752336-1752355 MS.gene86349:intron 40.0%
!! ATGCTTTTGGTTGTACCAGA+AGG - chr2.3:1751122-1751141 MS.gene86349:CDS 40.0%
!! CCAAATGGTGACTTTGAAGT+TGG - chr2.3:1750987-1751006 MS.gene86349:CDS 40.0%
!! CCCTTTAGGTTTGATGCTTT+TGG + chr2.3:1751014-1751033 None:intergenic 40.0%
!! GATAACTCTGGTTCTCTTTG+TGG - chr2.3:1752489-1752508 MS.gene86349:intron 40.0%
!! TATGTCCTCACTTTTGCAGT+TGG - chr2.3:1752285-1752304 MS.gene86349:intron 40.0%
ATTGATCCCACCACACATTG+AGG - chr2.3:1752098-1752117 MS.gene86349:CDS 45.0%
CATCACCAACTGCAAAAGTG+AGG + chr2.3:1752293-1752312 None:intergenic 45.0%
CCCATGATGCCATACCTAAT+TGG - chr2.3:1751048-1751067 MS.gene86349:CDS 45.0%
CGACAAGACGTACTAGGATT+AGG - chr2.3:1752436-1752455 MS.gene86349:intron 45.0%
CTAACAGCATAAGCACCTTC+TGG + chr2.3:1751140-1751159 None:intergenic 45.0%
GAACACTTCACAGTACCAGA+AGG - chr2.3:1752186-1752205 MS.gene86349:CDS 45.0%
GGAGCAATTGAACTTGTAGC+AGG - chr2.3:1752213-1752232 MS.gene86349:CDS 45.0%
GGTTGGGAATCATTTGCTTG+TGG - chr2.3:1751341-1751360 MS.gene86349:intron 45.0%
GTGTTCCCAAATGCATCATG+GGG - chr2.3:1752072-1752091 MS.gene86349:CDS 45.0%
GTTGAAGATGATCCAGCTTG+TGG - chr2.3:1751413-1751432 MS.gene86349:intron 45.0%
TTGTCACTACTGTGCCCTTT+AGG + chr2.3:1751028-1751047 None:intergenic 45.0%
! AGGTGGGTTCAAAACCTTCA+AGG + chr2.3:1751459-1751478 None:intergenic 45.0%
!! CAGAAGGTGCTTATGCTGTT+AGG - chr2.3:1751138-1751157 MS.gene86349:CDS 45.0%
!! GGTAAAGGAGGGTTTGTTAG+AGG - chr2.3:1752393-1752412 MS.gene86349:intron 45.0%
!! TACCTCTGGTTCTTCTAGGT+GGG + chr2.3:1751475-1751494 None:intergenic 45.0%
!! TTACCTCTGGTTCTTCTAGG+TGG + chr2.3:1751476-1751495 None:intergenic 45.0%
AACCCACCTAGAAGAACCAG+AGG - chr2.3:1751470-1751489 MS.gene86349:intron 50.0%
AGGCTACGACAAGACGTACT+AGG - chr2.3:1752430-1752449 MS.gene86349:intron 50.0%
CCACACATTGAGGATGCTCA+TGG - chr2.3:1752108-1752127 MS.gene86349:CDS 50.0%
CCATGAGCATCCTCAATGTG+TGG + chr2.3:1752111-1752130 None:intergenic 50.0%
CTCATGGTCCATTACCAGGA+TGG - chr2.3:1752124-1752143 MS.gene86349:CDS 50.0%
GAGCATCCTCAATGTGTGGT+GGG + chr2.3:1752107-1752126 None:intergenic 50.0%
GATGCTCATGGTCCATTACC+AGG - chr2.3:1752120-1752139 MS.gene86349:CDS 50.0%
GGTGCTTATGCTGTTAGGCT+AGG - chr2.3:1751143-1751162 MS.gene86349:CDS 50.0%
TCAATAAGTGGGCCACAAGC+TGG + chr2.3:1751428-1751447 None:intergenic 50.0%
TGAGCATCCTCAATGTGTGG+TGG + chr2.3:1752108-1752127 None:intergenic 50.0%
GCGAGCTGCACTGAATGTGA+TGG + chr2.3:1751222-1751241 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 1750681 1752569 1750681 ID=MS.gene86349
chr2.3 mRNA 1750681 1752569 1750681 ID=MS.gene86349.t1;Parent=MS.gene86349
chr2.3 exon 1752557 1752569 1752557 ID=MS.gene86349.t1.exon1;Parent=MS.gene86349.t1
chr2.3 CDS 1752557 1752569 1752557 ID=cds.MS.gene86349.t1;Parent=MS.gene86349.t1
chr2.3 exon 1751759 1752271 1751759 ID=MS.gene86349.t1.exon2;Parent=MS.gene86349.t1
chr2.3 CDS 1751759 1752271 1751759 ID=cds.MS.gene86349.t1;Parent=MS.gene86349.t1
chr2.3 exon 1750681 1751219 1750681 ID=MS.gene86349.t1.exon3;Parent=MS.gene86349.t1
chr2.3 CDS 1750681 1751219 1750681 ID=cds.MS.gene86349.t1;Parent=MS.gene86349.t1
Gene Sequence

>MS.gene86349

ATGGCTTACAAAGGTTTGCATGTGCCCACAGCCTGCACTTATTAACATGTTCCTTATCACATGGTGGAACAAGACCAAAAAGTGCTCTTGAAAAAGATATTTCAACTTTTATTTATATATCTAGGTGTCATATGTATACCTTTTTTTTTGTGGAAAATATAGGTCTCATGGGGATGTAGAAAAATTTTCCTATCATAAGGTTCAAACAATTTAATCTTTTAAATTTACGAAATATCACACAAATCTTTTAAATTTAAAAAATATCGATTTAGTCCTTATCAATTTAAAATTCTTTCAGGTTTATTGCCAAATGGTGACTTTGAAGTTGGTCCAAAAGCATCAAACCTAAAGGGCACAGTAGTGACAACCCATGATGCCATACCTAATTGGACAGTTTCAGGATACGTTGAATACATAAAATCAGGACAAAAACAAGGTGACATGCTTTTGGTTGTACCAGAAGGTGCTTATGCTGTTAGGCTAGGAAATGAAGCATACATTAAGCAAAAAGTGAAGCTTAATAAAGGGTCGTCTTATTCCATCACATTCAGTGCAGCTCGCACGTGTGCACAAGAAGAGAAACTTAATGTGTCAGTGGTACCAACTTCTGAGAAAAGAGATTATGGTATCATTCCTATACAAACTATGTATGGTAGCAATGGTTGGGAATCATTTGCTTGTGGGTTTAGAGCTGATTATCCAGAAGGGGAAATTGTTATCCATAACTCTGGTGTTGAAGATGATCCAGCTTGTGGCCCACTTATTGATTCTGTTGCCTTGAAGGTTTTGAACCCACCTAGAAGAACCAGAGGTAATTTTTGTTCCCTACATAAAAGTACATGTCCATGTATCTAAATTTGTATACATTGATATTGTGCACAAAATTCTACCTAGCTTAATTGTATTTTACTATTTACATATATCATAATGTTATTATTTAAAGTATCTAAATAAATAATAATATGATGATATCATGACTTTGACAAAAGCTACATGTTATAATTTTAACAAAATCAAAGTGTCTTCATGATTTCGTCAAATTCATTGTGATTTCAAGCATATATTTATGATGTGTTTGGATTGACGGTAAACATGTCACAATCACAGTGTGTTAATGTGATTTTCGCAATTGGAGACAAAGTATCACACACAATGTCATAGTCAAATACATTGTGACTCCATACATGTAATTAAACGGTCCAATATGATTGAATATTTTTGTAAATCTATTTTATGCTTTTTTACATACAAATAAAATTCTTAATTTAATGCAAAGAGGATTAAACTATTTGATGTATGAAATTAAATTTGGATTGAAGTTTAATTGTTGTTTTTGTTTGTTTGGTGCAGCCAATTTATTGAAAAATGGAAACTTTGAAGAAGGACCATATGTGTTCCCAAATGCATCATGGGGAGTATTGATCCCACCACACATTGAGGATGCTCATGGTCCATTACCAGGATGGATAGTTGAATCTCTCAAAGCAGTGAAATACATTGATTCTGAACACTTCACAGTACCAGAAGGAAAAGGAGCAATTGAACTTGTAGCAGGGAAAGAAAGTGCACTTGCACAAGAAGTCTTCACCACAATTGGAAAAGTTTATGTCCTCACTTTTGCAGTTGGTGATGCTAATAATGCATGTGAAGGTTCTATGACTGTAGAAGCATTTGCTGGTAGAGACACTGTTCAAGTTCCTTATCAATCTAAGGGTAAAGGAGGGTTTGTTAGAGGCAAACTTCGTTTTAAGGCTACGACAAGACGTACTAGGATTAGGTTCCTAAGTACATTTTACACCATGAAGAATGATAACTCTGGTTCTCTTTGTGGACCTGTTATTGATGATGTAAAATTGCTTAGTGTTCGTTATCCCAACAAGCATACCTAA
Protein sequence

>MS.gene86349.t1

MAYKGLLPNGDFEVGPKASNLKGTVVTTHDAIPNWTVSGYVEYIKSGQKQGDMLLVVPEGAYAVRLGNEAYIKQKVKLNKGSSYSITFSAARTCAQEEKLNVSVVPTSEKRDYGIIPIQTMYGSNGWESFACGFRADYPEGEIVIHNSGVEDDPACGPLIDSVALKVLNPPRRTRANLLKNGNFEEGPYVFPNASWGVLIPPHIEDAHGPLPGWIVESLKAVKYIDSEHFTVPEGKGAIELVAGKESALAQEVFTTIGKVYVLTFAVGDANNACEGSMTVEAFAGRDTVQVPYQSKGKGGFVRGKLRFKATTRRTRIRFLSTFYTMKNDNSGSLCGPVIDDVKLLSVRYPNKHT