Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene86397.t1 | XP_013465569.1 | 88 | 275 | 33 | 0 | 1 | 275 | 1 | 275 | 3.20E-53 | 218.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene86397.t1 | A0A072VN82 | 88.0 | 275 | 33 | 0 | 1 | 275 | 1 | 275 | 2.3e-53 | 218.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene055339 | MS.gene86397 | 0.816964 | 4.21E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene86397.t1 | MTR_2g103795 | 95.273 | 275 | 13 | 0 | 1 | 275 | 1 | 275 | 1.09e-170 | 473 |
MS.gene86397.t1 | MTR_2g103795 | 95.516 | 223 | 10 | 0 | 1 | 223 | 1 | 223 | 3.88e-131 | 370 |
MS.gene86397.t1 | MTR_4g010250 | 51.362 | 257 | 106 | 4 | 1 | 255 | 1 | 240 | 1.13e-66 | 208 |
MS.gene86397.t1 | MTR_4g114690 | 40.927 | 259 | 128 | 5 | 1 | 235 | 1 | 258 | 1.74e-51 | 170 |
MS.gene86397.t1 | MTR_7g098450 | 49.180 | 122 | 59 | 1 | 121 | 242 | 211 | 329 | 4.23e-34 | 127 |
MS.gene86397.t1 | MTR_7g098450 | 49.180 | 122 | 59 | 1 | 121 | 242 | 234 | 352 | 4.92e-34 | 127 |
MS.gene86397.t1 | MTR_5g029910 | 52.941 | 102 | 48 | 0 | 136 | 237 | 119 | 220 | 5.25e-33 | 121 |
MS.gene86397.t1 | MTR_7g099260 | 46.721 | 122 | 59 | 2 | 131 | 246 | 226 | 347 | 2.25e-30 | 117 |
MS.gene86397.t1 | MTR_1g073230 | 38.732 | 142 | 81 | 2 | 101 | 242 | 96 | 231 | 1.17e-24 | 101 |
MS.gene86397.t1 | MTR_1g073230 | 45.455 | 110 | 59 | 1 | 133 | 241 | 266 | 375 | 1.10e-21 | 93.6 |
MS.gene86397.t1 | MTR_3g463450 | 40.816 | 98 | 58 | 0 | 139 | 236 | 399 | 496 | 4.17e-19 | 87.0 |
MS.gene86397.t1 | MTR_5g082130 | 38.318 | 107 | 66 | 0 | 137 | 243 | 296 | 402 | 1.34e-16 | 79.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene86397.t1 | AT5G20190 | 62.626 | 99 | 37 | 0 | 139 | 237 | 156 | 254 | 2.02e-40 | 142 |
MS.gene86397.t1 | AT1G80130 | 41.852 | 270 | 113 | 7 | 1 | 235 | 1 | 261 | 1.55e-39 | 140 |
MS.gene86397.t1 | AT4G32340 | 59.000 | 100 | 40 | 1 | 139 | 237 | 110 | 209 | 6.17e-35 | 126 |
MS.gene86397.t1 | AT4G17940 | 57.292 | 96 | 41 | 0 | 142 | 237 | 153 | 248 | 4.71e-34 | 124 |
MS.gene86397.t1 | AT2G29670 | 40.650 | 123 | 71 | 1 | 131 | 253 | 412 | 532 | 3.14e-22 | 96.3 |
MS.gene86397.t1 | AT2G29670 | 40.650 | 123 | 71 | 1 | 131 | 253 | 412 | 532 | 3.14e-22 | 96.3 |
MS.gene86397.t1 | AT1G04530 | 47.368 | 95 | 49 | 1 | 142 | 236 | 124 | 217 | 3.62e-21 | 91.3 |
MS.gene86397.t1 | AT1G04530 | 28.571 | 126 | 68 | 3 | 136 | 239 | 185 | 310 | 4.61e-11 | 62.8 |
MS.gene86397.t1 | AT1G07280 | 41.346 | 104 | 61 | 0 | 138 | 241 | 434 | 537 | 1.21e-19 | 88.6 |
MS.gene86397.t1 | AT1G07280 | 41.346 | 104 | 61 | 0 | 138 | 241 | 434 | 537 | 1.21e-19 | 88.6 |
MS.gene86397.t1 | AT1G07280 | 41.346 | 104 | 61 | 0 | 138 | 241 | 434 | 537 | 1.21e-19 | 88.6 |
MS.gene86397.t1 | AT3G47080 | 36.735 | 98 | 62 | 0 | 139 | 236 | 400 | 497 | 6.35e-14 | 71.6 |
Find 55 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCAAGTAAAAGAGAATTATT+TGG | 0.185235 | 2.3:+1281613 | None:intergenic |
CTTGGACTTGCAAGTGTTCT+AGG | 0.227205 | 2.3:+1281970 | None:intergenic |
CTCTCTATGCTGATTTAATA+TGG | 0.230159 | 2.3:-1281052 | MS.gene86397:CDS |
TTTAACAGCCCTATCAAAAT+AGG | 0.241375 | 2.3:+1280998 | None:intergenic |
GTATGTTGAAAGAGCCATTT+TGG | 0.262466 | 2.3:-1281102 | MS.gene86397:CDS |
GGTTTGCTTCAATCATGTTT+TGG | 0.294320 | 2.3:+1281635 | None:intergenic |
AAGTAGGTTCGTGGAGATTA+TGG | 0.302005 | 2.3:-1281137 | MS.gene86397:intron |
ATCACTAGGGCTAGCCAAAA+TGG | 0.330932 | 2.3:+1281088 | None:intergenic |
TAGTTTAGATAAGCAAGTTT+TGG | 0.332832 | 2.3:-1281839 | MS.gene86397:CDS |
AGTAATGGGTGGTGGTGGTA+TGG | 0.351405 | 2.3:-1281773 | MS.gene86397:CDS |
AATGGTAGTGGAAGAGATTC+TGG | 0.357707 | 2.3:-1281718 | MS.gene86397:CDS |
GATTTCTCTTACCAATCATC+TGG | 0.360855 | 2.3:+1280969 | None:intergenic |
TTCTTTCCTTCCACACTCAA+TGG | 0.370876 | 2.3:-1282028 | MS.gene86397:CDS |
GTAATGGGTGGTGGTGGTAT+GGG | 0.372856 | 2.3:-1281772 | MS.gene86397:CDS |
CAAGTAAAAGAGAATTATTT+GGG | 0.377661 | 2.3:+1281614 | None:intergenic |
TGGTGATTGAGTTCTTGTTC+AGG | 0.381932 | 2.3:+1281997 | None:intergenic |
CTTCATATGCAAAATTCCTA+TGG | 0.391469 | 2.3:-1280728 | MS.gene86397:CDS |
GGTGGTATGGGGTGTGATGG+TGG | 0.402385 | 2.3:-1281760 | MS.gene86397:CDS |
GAAAACAGTTCTCTCGTTGA+AGG | 0.403809 | 2.3:+1281868 | None:intergenic |
GGTGGTGGTATGGGGTGTGA+TGG | 0.405771 | 2.3:-1281763 | MS.gene86397:CDS |
AAGTTGCAAACTTTAGTAAT+GGG | 0.406381 | 2.3:-1281787 | MS.gene86397:CDS |
AGAGATTCTGGTGGTGGAAA+TGG | 0.409069 | 2.3:-1281706 | MS.gene86397:CDS |
TGTGATGGTGGAAGTATTTG+TGG | 0.443120 | 2.3:-1281748 | MS.gene86397:CDS |
AAAGTTGCAAACTTTAGTAA+TGG | 0.445266 | 2.3:-1281788 | MS.gene86397:CDS |
AGTATTTGTGGTGGTTGTAA+TGG | 0.447043 | 2.3:-1281736 | MS.gene86397:CDS |
TCTGGTGGTGGAAATGGAAA+TGG | 0.452290 | 2.3:-1281700 | MS.gene86397:CDS |
AAAGATCAGGTGAAAGTGTA+TGG | 0.469919 | 2.3:+1280655 | None:intergenic |
GGTGATTGAGTTCTTGTTCA+GGG | 0.477042 | 2.3:+1281998 | None:intergenic |
TAATGGGTGGTGGTGGTATG+GGG | 0.499472 | 2.3:-1281771 | MS.gene86397:CDS |
TGTGGTGGTTGTAATGGTAG+TGG | 0.516522 | 2.3:-1281730 | MS.gene86397:CDS |
TTAAAAGTGATCCAGATGAT+TGG | 0.517931 | 2.3:-1280980 | MS.gene86397:intron |
TTATCACATCAGCTATGTCC+TGG | 0.518059 | 2.3:-1280751 | MS.gene86397:intron |
CAATTTGAAAAGTAGGTTCG+TGG | 0.525753 | 2.3:-1281146 | MS.gene86397:intron |
CATCTTCTTCAGCGTCCCAT+AGG | 0.538742 | 2.3:+1280712 | None:intergenic |
GGAAGGAAAGAACTTGGAAT+TGG | 0.544342 | 2.3:+1282039 | None:intergenic |
ACTTTAGTAATGGGTGGTGG+TGG | 0.545271 | 2.3:-1281778 | MS.gene86397:CDS |
AGTGGAAGAGATTCTGGTGG+TGG | 0.546901 | 2.3:-1281712 | MS.gene86397:CDS |
GATAAAGCATCAGCATCACT+AGG | 0.552225 | 2.3:+1281074 | None:intergenic |
AAGATTCCATTGAGTGTGGA+AGG | 0.563863 | 2.3:+1282022 | None:intergenic |
TTCATATGCAAAATTCCTAT+GGG | 0.567504 | 2.3:-1280727 | MS.gene86397:CDS |
GTGATTGAGTTCTTGTTCAG+GGG | 0.572118 | 2.3:+1281999 | None:intergenic |
GAGTGTGGAAGGAAAGAACT+TGG | 0.576678 | 2.3:+1282033 | None:intergenic |
GACTTGCAAGTGTTCTAGGA+AGG | 0.580355 | 2.3:+1281974 | None:intergenic |
GGGGAAGATTCCATTGAGTG+TGG | 0.597244 | 2.3:+1282018 | None:intergenic |
CAAACTTTAGTAATGGGTGG+TGG | 0.599262 | 2.3:-1281781 | MS.gene86397:CDS |
AATGGATGGGAAAATAATGA+TGG | 0.600399 | 2.3:-1281682 | MS.gene86397:CDS |
TTGCAAACTTTAGTAATGGG+TGG | 0.605342 | 2.3:-1281784 | MS.gene86397:CDS |
TGGTGGAAATGGAAATGGAT+GGG | 0.611749 | 2.3:-1281695 | MS.gene86397:CDS |
TGGTGATGATTCTTAAGAAG+TGG | 0.624905 | 2.3:+1281931 | None:intergenic |
ATAAAGCATCAGCATCACTA+GGG | 0.631318 | 2.3:+1281075 | None:intergenic |
TTGCAAGTGTTCTAGGAAGG+TGG | 0.634929 | 2.3:+1281977 | None:intergenic |
GTGGTGGAAATGGAAATGGA+TGG | 0.643918 | 2.3:-1281696 | MS.gene86397:CDS |
GATGGTGGAAGTATTTGTGG+TGG | 0.659019 | 2.3:-1281745 | MS.gene86397:CDS |
TGGAGATTATGGTAAAGCAG+AGG | 0.689369 | 2.3:-1281126 | MS.gene86397:CDS |
GGTAGTGGAAGAGATTCTGG+TGG | 0.752433 | 2.3:-1281715 | MS.gene86397:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATATCAAACTTGAAATT+TGG | - | chr2.3:1281255-1281274 | MS.gene86397:intron | 15.0% |
!! | ACAATATATAAATGAAGATT+AGG | - | chr2.3:1281388-1281407 | MS.gene86397:intron | 15.0% |
!! | TATAACATCAAATAAAAATC+AGG | + | chr2.3:1281868-1281887 | None:intergenic | 15.0% |
!! | TGTATTGTGATTAAAATATA+TGG | - | chr2.3:1281475-1281494 | MS.gene86397:intron | 15.0% |
!!! | TAGGTAAAATATTTTGTAAT+TGG | - | chr2.3:1281412-1281431 | MS.gene86397:intron | 15.0% |
!! | CAAGTAAAAGAGAATTATTT+GGG | + | chr2.3:1281057-1281076 | None:intergenic | 20.0% |
!! | TAAACAAACACAAATGTAAA+AGG | - | chr2.3:1281789-1281808 | MS.gene86397:CDS | 20.0% |
!! | TAATGTTCAATTTGAAAAGT+AGG | - | chr2.3:1281515-1281534 | MS.gene86397:intron | 20.0% |
!! | TTAAGTTATGTGTTGAAATA+TGG | + | chr2.3:1281223-1281242 | None:intergenic | 20.0% |
! | AAACACAAATGTAAAAGGTT+TGG | - | chr2.3:1281794-1281813 | MS.gene86397:CDS | 25.0% |
! | AAAGTTGCAAACTTTAGTAA+TGG | - | chr2.3:1280880-1280899 | MS.gene86397:intron | 25.0% |
! | AAGTTGCAAACTTTAGTAAT+GGG | - | chr2.3:1280881-1280900 | MS.gene86397:intron | 25.0% |
! | AGAGAAATCTTAAATCTATG+TGG | - | chr2.3:1281713-1281732 | MS.gene86397:CDS | 25.0% |
! | ATATAAATGAAGATTAGGCT+AGG | - | chr2.3:1281393-1281412 | MS.gene86397:intron | 25.0% |
! | CCAAGTAAAAGAGAATTATT+TGG | + | chr2.3:1281058-1281077 | None:intergenic | 25.0% |
! | TTCATATGCAAAATTCCTAT+GGG | - | chr2.3:1281941-1281960 | MS.gene86397:CDS | 25.0% |
!! | ACGAATTAGACTTAAACTTT+TGG | + | chr2.3:1281350-1281369 | None:intergenic | 25.0% |
!! | CCAAATAATTCTCTTTTACT+TGG | - | chr2.3:1281055-1281074 | MS.gene86397:CDS | 25.0% |
!! | TAGTTTAGATAAGCAAGTTT+TGG | - | chr2.3:1280829-1280848 | MS.gene86397:intron | 25.0% |
!!! | ATTTTTGTTCTGTTTCTTCT+TGG | + | chr2.3:1280760-1280779 | None:intergenic | 25.0% |
!!! | TTATGCTAAGTTTTTGAAAG+AGG | - | chr2.3:1281081-1281100 | MS.gene86397:CDS | 25.0% |
AATGGATGGGAAAATAATGA+TGG | - | chr2.3:1280986-1281005 | MS.gene86397:CDS | 30.0% | |
CTTCATATGCAAAATTCCTA+TGG | - | chr2.3:1281940-1281959 | MS.gene86397:CDS | 30.0% | |
TTAAAAGTGATCCAGATGAT+TGG | - | chr2.3:1281688-1281707 | MS.gene86397:CDS | 30.0% | |
TTTAACAGCCCTATCAAAAT+AGG | + | chr2.3:1281673-1281692 | None:intergenic | 30.0% | |
!! | CTCTCTATGCTGATTTAATA+TGG | - | chr2.3:1281616-1281635 | MS.gene86397:CDS | 30.0% |
AGTATTTGTGGTGGTTGTAA+TGG | - | chr2.3:1280932-1280951 | MS.gene86397:intron | 35.0% | |
ATAACATGATCAAGCTCAAG+TGG | + | chr2.3:1281142-1281161 | None:intergenic | 35.0% | |
CAATTTGAAAAGTAGGTTCG+TGG | - | chr2.3:1281522-1281541 | MS.gene86397:intron | 35.0% | |
GAAGAAGGTGGTAAAAAAGT+AGG | - | chr2.3:1280857-1280876 | MS.gene86397:intron | 35.0% | |
GATTTCTCTTACCAATCATC+TGG | + | chr2.3:1281702-1281721 | None:intergenic | 35.0% | |
TCACGCAAGAGAAATACTTA+GGG | - | chr2.3:1281765-1281784 | MS.gene86397:CDS | 35.0% | |
TTAGCTCCTAGAAAAAGATC+AGG | + | chr2.3:1282029-1282048 | None:intergenic | 35.0% | |
! | AAAGATCAGGTGAAAGTGTA+TGG | + | chr2.3:1282016-1282035 | None:intergenic | 35.0% |
! | ATAAAGCATCAGCATCACTA+GGG | + | chr2.3:1281596-1281615 | None:intergenic | 35.0% |
! | CTTTCACCTGATCTTTTTCT+AGG | - | chr2.3:1282020-1282039 | MS.gene86397:CDS | 35.0% |
! | GTATGTTGAAAGAGCCATTT+TGG | - | chr2.3:1281566-1281585 | MS.gene86397:intron | 35.0% |
! | TGGTGATGATTCTTAAGAAG+TGG | + | chr2.3:1280740-1280759 | None:intergenic | 35.0% |
! | TTGCAAACTTTAGTAATGGG+TGG | - | chr2.3:1280884-1280903 | MS.gene86397:intron | 35.0% |
!! | GATCTTTTTCTAGGAGCTAA+TGG | - | chr2.3:1282029-1282048 | MS.gene86397:CDS | 35.0% |
!! | GGTTTGCTTCAATCATGTTT+TGG | + | chr2.3:1281036-1281055 | None:intergenic | 35.0% |
!!! | AGCTGAAGCCTATTTTGATA+GGG | - | chr2.3:1281662-1281681 | MS.gene86397:CDS | 35.0% |
!!! | CAAGTTTTGGATCATGAAGA+AGG | - | chr2.3:1280842-1280861 | MS.gene86397:intron | 35.0% |
!!! | GGTGCAGATTTTTTATGTCT+TGG | + | chr2.3:1280719-1280738 | None:intergenic | 35.0% |
AAGATTCCATTGAGTGTGGA+AGG | + | chr2.3:1280649-1280668 | None:intergenic | 40.0% | |
AAGTAGGTTCGTGGAGATTA+TGG | - | chr2.3:1281531-1281550 | MS.gene86397:intron | 40.0% | |
CTCACGCAAGAGAAATACTT+AGG | - | chr2.3:1281764-1281783 | MS.gene86397:CDS | 40.0% | |
GAAAACAGTTCTCTCGTTGA+AGG | + | chr2.3:1280803-1280822 | None:intergenic | 40.0% | |
GAATTCAGATTGCATGCAGT+CGG | + | chr2.3:1281315-1281334 | None:intergenic | 40.0% | |
GCGTGAGAATGTATACATAG+AGG | + | chr2.3:1281751-1281770 | None:intergenic | 40.0% | |
GGAAGGAAAGAACTTGGAAT+TGG | + | chr2.3:1280632-1280651 | None:intergenic | 40.0% | |
GGTGATTGAGTTCTTGTTCA+GGG | + | chr2.3:1280673-1280692 | None:intergenic | 40.0% | |
GTGATTGAGTTCTTGTTCAG+GGG | + | chr2.3:1280672-1280691 | None:intergenic | 40.0% | |
TGGAGATTATGGTAAAGCAG+AGG | - | chr2.3:1281542-1281561 | MS.gene86397:intron | 40.0% | |
TGGTGATTGAGTTCTTGTTC+AGG | + | chr2.3:1280674-1280693 | None:intergenic | 40.0% | |
TGGTGGAAATGGAAATGGAT+GGG | - | chr2.3:1280973-1280992 | MS.gene86397:intron | 40.0% | |
TTATCACATCAGCTATGTCC+TGG | - | chr2.3:1281917-1281936 | MS.gene86397:CDS | 40.0% | |
TTCTTTCCTTCCACACTCAA+TGG | - | chr2.3:1280640-1280659 | MS.gene86397:CDS | 40.0% | |
! | GATAAAGCATCAGCATCACT+AGG | + | chr2.3:1281597-1281616 | None:intergenic | 40.0% |
! | GGAATTTTGCATATGAAGCC+AGG | + | chr2.3:1281938-1281957 | None:intergenic | 40.0% |
! | GGCTCTTATCAGTTTTCTGT+TGG | + | chr2.3:1281995-1282014 | None:intergenic | 40.0% |
! | GTCGGTACATTGATGATTGT+TGG | + | chr2.3:1281297-1281316 | None:intergenic | 40.0% |
!! | AATGGTAGTGGAAGAGATTC+TGG | - | chr2.3:1280950-1280969 | MS.gene86397:intron | 40.0% |
!! | CAAACTTTAGTAATGGGTGG+TGG | - | chr2.3:1280887-1280906 | MS.gene86397:intron | 40.0% |
!! | GTTTTGGATCATGAAGAAGG+TGG | - | chr2.3:1280845-1280864 | MS.gene86397:intron | 40.0% |
!! | TGTGATGGTGGAAGTATTTG+TGG | - | chr2.3:1280920-1280939 | MS.gene86397:intron | 40.0% |
!!! | GAGCTGAAGCCTATTTTGAT+AGG | - | chr2.3:1281661-1281680 | MS.gene86397:CDS | 40.0% |
ATTAATTCCCCGCATTCACG+CGG | - | chr2.3:1281160-1281179 | MS.gene86397:intron | 45.0% | |
CAGTGGTTGTTGATCGAGAT+AGG | - | chr2.3:1281192-1281211 | MS.gene86397:intron | 45.0% | |
CTTGGACTTGCAAGTGTTCT+AGG | + | chr2.3:1280701-1280720 | None:intergenic | 45.0% | |
GAGTGTGGAAGGAAAGAACT+TGG | + | chr2.3:1280638-1280657 | None:intergenic | 45.0% | |
TGTGGTGGTTGTAATGGTAG+TGG | - | chr2.3:1280938-1280957 | MS.gene86397:intron | 45.0% | |
! | GTGGTGGAAATGGAAATGGA+TGG | - | chr2.3:1280972-1280991 | MS.gene86397:intron | 45.0% |
!! | ACTTTAGTAATGGGTGGTGG+TGG | - | chr2.3:1280890-1280909 | MS.gene86397:intron | 45.0% |
!! | AGAGATTCTGGTGGTGGAAA+TGG | - | chr2.3:1280962-1280981 | MS.gene86397:intron | 45.0% |
!! | ATCACTAGGGCTAGCCAAAA+TGG | + | chr2.3:1281583-1281602 | None:intergenic | 45.0% |
!! | GACTTGCAAGTGTTCTAGGA+AGG | + | chr2.3:1280697-1280716 | None:intergenic | 45.0% |
!! | GATGGTGGAAGTATTTGTGG+TGG | - | chr2.3:1280923-1280942 | MS.gene86397:intron | 45.0% |
!! | TCTGGTGGTGGAAATGGAAA+TGG | - | chr2.3:1280968-1280987 | MS.gene86397:intron | 45.0% |
!! | TTGCAAGTGTTCTAGGAAGG+TGG | + | chr2.3:1280694-1280713 | None:intergenic | 45.0% |
AGTGGAAGAGATTCTGGTGG+TGG | - | chr2.3:1280956-1280975 | MS.gene86397:intron | 50.0% | |
ATGTGCTAACCGCGTGAATG+CGG | + | chr2.3:1281172-1281191 | None:intergenic | 50.0% | |
CATCTTCTTCAGCGTCCCAT+AGG | + | chr2.3:1281959-1281978 | None:intergenic | 50.0% | |
GGGGAAGATTCCATTGAGTG+TGG | + | chr2.3:1280653-1280672 | None:intergenic | 50.0% | |
!! | AGTAATGGGTGGTGGTGGTA+TGG | - | chr2.3:1280895-1280914 | MS.gene86397:intron | 50.0% |
!! | GGTAGTGGAAGAGATTCTGG+TGG | - | chr2.3:1280953-1280972 | MS.gene86397:intron | 50.0% |
!! | GTAATGGGTGGTGGTGGTAT+GGG | - | chr2.3:1280896-1280915 | MS.gene86397:intron | 50.0% |
!! | TAATGGGTGGTGGTGGTATG+GGG | - | chr2.3:1280897-1280916 | MS.gene86397:intron | 50.0% |
TCACGCGGTTAGCACATCAG+TGG | - | chr2.3:1281175-1281194 | MS.gene86397:intron | 55.0% | |
TGTGCTAACCGCGTGAATGC+GGG | + | chr2.3:1281171-1281190 | None:intergenic | 55.0% | |
GGTGGTATGGGGTGTGATGG+TGG | - | chr2.3:1280908-1280927 | MS.gene86397:intron | 60.0% | |
GTGCTAACCGCGTGAATGCG+GGG | + | chr2.3:1281170-1281189 | None:intergenic | 60.0% | |
! | GGTGGTGGTATGGGGTGTGA+TGG | - | chr2.3:1280905-1280924 | MS.gene86397:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 1280605 | 1282085 | 1280605 | ID=MS.gene86397 |
chr2.3 | mRNA | 1280605 | 1282085 | 1280605 | ID=MS.gene86397.t1;Parent=MS.gene86397 |
chr2.3 | exon | 1281588 | 1282085 | 1281588 | ID=MS.gene86397.t1.exon1;Parent=MS.gene86397.t1 |
chr2.3 | CDS | 1281588 | 1282085 | 1281588 | ID=cds.MS.gene86397.t1;Parent=MS.gene86397.t1 |
chr2.3 | exon | 1280981 | 1281153 | 1280981 | ID=MS.gene86397.t1.exon2;Parent=MS.gene86397.t1 |
chr2.3 | CDS | 1280981 | 1281153 | 1280981 | ID=cds.MS.gene86397.t1;Parent=MS.gene86397.t1 |
chr2.3 | exon | 1280605 | 1280761 | 1280605 | ID=MS.gene86397.t1.exon3;Parent=MS.gene86397.t1 |
chr2.3 | CDS | 1280605 | 1280761 | 1280605 | ID=cds.MS.gene86397.t1;Parent=MS.gene86397.t1 |
Gene Sequence |
Protein sequence |