Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87460.t1 | XP_003629427.1 | 94.4 | 54 | 3 | 0 | 42 | 95 | 19 | 72 | 9.40E-21 | 109.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87460.t1 | F4JVB8 | 59.2 | 49 | 19 | 1 | 45 | 92 | 31 | 79 | 3.4e-11 | 68.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87460.t1 | G7LDY8 | 94.4 | 54 | 3 | 0 | 42 | 95 | 19 | 72 | 6.8e-21 | 109.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene05907 | MS.gene87460 | 0.800226 | 1.59E-48 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87460.t1 | MTR_8g077380 | 94.444 | 54 | 3 | 0 | 42 | 95 | 19 | 72 | 6.66e-33 | 109 |
MS.gene87460.t1 | MTR_8g077390 | 94.444 | 54 | 3 | 0 | 42 | 95 | 19 | 72 | 6.66e-33 | 109 |
MS.gene87460.t1 | MTR_8g077360 | 92.593 | 54 | 4 | 0 | 42 | 95 | 19 | 72 | 2.00e-32 | 108 |
MS.gene87460.t1 | MTR_5g020540 | 63.158 | 57 | 21 | 0 | 31 | 87 | 7 | 63 | 9.28e-22 | 80.9 |
MS.gene87460.t1 | MTR_8g077420 | 65.385 | 52 | 17 | 1 | 42 | 93 | 19 | 69 | 1.26e-19 | 75.9 |
MS.gene87460.t1 | MTR_3g116720 | 62.500 | 48 | 17 | 1 | 45 | 91 | 33 | 80 | 1.88e-16 | 67.8 |
MS.gene87460.t1 | MTR_6g004250 | 55.102 | 49 | 21 | 1 | 42 | 89 | 24 | 72 | 2.59e-15 | 65.1 |
MS.gene87460.t1 | MTR_1g022290 | 49.020 | 51 | 25 | 1 | 42 | 91 | 21 | 71 | 1.88e-14 | 63.2 |
MS.gene87460.t1 | MTR_7g089210 | 54.000 | 50 | 22 | 1 | 42 | 90 | 26 | 75 | 9.37e-14 | 61.2 |
MS.gene87460.t1 | MTR_5g020170 | 46.000 | 50 | 26 | 1 | 42 | 90 | 33 | 82 | 1.55e-13 | 60.8 |
MS.gene87460.t1 | MTR_3g111880 | 55.102 | 49 | 21 | 1 | 45 | 92 | 24 | 72 | 2.54e-13 | 60.1 |
MS.gene87460.t1 | MTR_3g013440 | 55.102 | 49 | 20 | 1 | 45 | 91 | 27 | 75 | 4.13e-12 | 57.0 |
MS.gene87460.t1 | MTR_3g111920 | 55.102 | 49 | 21 | 1 | 46 | 93 | 21 | 69 | 6.64e-12 | 56.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87460.t1 | AT4G39250 | 58.000 | 50 | 20 | 1 | 43 | 91 | 29 | 78 | 1.09e-16 | 69.3 |
MS.gene87460.t1 | AT1G75250 | 58.824 | 51 | 20 | 1 | 42 | 91 | 26 | 76 | 3.89e-16 | 67.8 |
MS.gene87460.t1 | AT1G75250 | 58.824 | 51 | 20 | 1 | 42 | 91 | 26 | 76 | 6.48e-16 | 67.8 |
MS.gene87460.t1 | AT2G21650 | 49.091 | 55 | 27 | 1 | 42 | 95 | 28 | 82 | 4.60e-15 | 65.1 |
MS.gene87460.t1 | AT1G19510 | 54.902 | 51 | 22 | 1 | 42 | 91 | 26 | 76 | 7.08e-15 | 64.7 |
MS.gene87460.t1 | AT2G18328 | 54.902 | 51 | 21 | 2 | 45 | 94 | 28 | 77 | 6.70e-12 | 56.2 |
Find 31 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCAACATTGTGCCATCTTTC+TGG | 0.106622 | 8.3:+26852724 | None:intergenic |
TGTAACGAGGAAAAGGGATA+TGG | 0.417505 | 8.3:+26852620 | None:intergenic |
TAGAGGAGATCATGAGCATA+TGG | 0.426620 | 8.3:-26853967 | None:intergenic |
CAGTTTAGCTCTGGTTTCGC+TGG | 0.427351 | 8.3:+26853937 | None:intergenic |
TACGTTGAACATCTTCTTTG+AGG | 0.435409 | 8.3:+26852653 | None:intergenic |
TTTCTTCCTCAGTTTAGCTC+TGG | 0.443130 | 8.3:+26853928 | None:intergenic |
AACGATCCAACGAGGGTTGA+AGG | 0.460921 | 8.3:-26853906 | MS.gene87460:CDS |
TCCCACCTCCGATGTAGCTC+CGG | 0.481465 | 8.3:+26853839 | None:intergenic |
CTCCGATGTAGCTCCGGTGG+TGG | 0.488360 | 8.3:+26853845 | None:intergenic |
AAAACTAACACCAACTCCTA+AGG | 0.511780 | 8.3:-26852598 | None:intergenic |
CGATGTAGCTCCGGTGGTGG+TGG | 0.514969 | 8.3:+26853848 | None:intergenic |
CCTCATCACACCACCACCAC+CGG | 0.526268 | 8.3:-26853858 | MS.gene87460:CDS |
CACAATGTTGCCAAAGTGGT+TGG | 0.534351 | 8.3:-26852712 | MS.gene87460:CDS |
CACCACCACCGGAGCTACAT+CGG | 0.540407 | 8.3:-26853847 | MS.gene87460:CDS |
ATAGAGAAACTCCAGAAAGA+TGG | 0.558722 | 8.3:-26852735 | MS.gene87460:intron |
ATATATTAAACCTTAGGAGT+TGG | 0.562428 | 8.3:+26852588 | None:intergenic |
CACCTCCGATGTAGCTCCGG+TGG | 0.566371 | 8.3:+26853842 | None:intergenic |
TCTCACCCTTCAACCCTCGT+TGG | 0.571268 | 8.3:+26853900 | None:intergenic |
AGAGGAGATCATGAGCATAT+GGG | 0.580432 | 8.3:-26853966 | None:intergenic |
ACGATCCAACGAGGGTTGAA+GGG | 0.587677 | 8.3:-26853905 | MS.gene87460:CDS |
TGAAGGGTGAGAAGGTGGTG+CGG | 0.597027 | 8.3:-26853889 | MS.gene87460:CDS |
ACGAGGGTTGAAGGGTGAGA+AGG | 0.602528 | 8.3:-26853897 | MS.gene87460:CDS |
CCGGTGGTGGTGGTGTGATG+AGG | 0.612549 | 8.3:+26853858 | None:intergenic |
AGGGTTGAAGGGTGAGAAGG+TGG | 0.622727 | 8.3:-26853894 | MS.gene87460:CDS |
AGGGTGAGAAGGTGGTGCGG+AGG | 0.637835 | 8.3:-26853886 | MS.gene87460:CDS |
ATGGCACAATGTTGCCAAAG+TGG | 0.642850 | 8.3:-26852716 | MS.gene87460:CDS |
GATGTTCAACGTATTGAGCG+TGG | 0.669371 | 8.3:-26852643 | MS.gene87460:CDS |
CACCACCGGAGCTACATCGG+AGG | 0.689649 | 8.3:-26853844 | MS.gene87460:intron |
AGGAAGAAAACGATCCAACG+AGG | 0.693659 | 8.3:-26853914 | MS.gene87460:CDS |
GGAAGAAAACGATCCAACGA+GGG | 0.702880 | 8.3:-26853913 | MS.gene87460:CDS |
GCGAAACCAGAGCTAAACTG+AGG | 0.711386 | 8.3:-26853934 | MS.gene87460:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATATTGTAAAAAGAAAAAT+TGG | + | chr8.3:26853226-26853245 | None:intergenic | 10.0% |
!! | ATTTAGAAAAATATGTATAA+AGG | - | chr8.3:26853464-26853483 | MS.gene87460:intron | 10.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr8.3:26852925-26852944 | MS.gene87460:intron | 100.0% |
!! | AGAAAAGAGAAAAATAATAA+TGG | + | chr8.3:26853299-26853318 | None:intergenic | 15.0% |
!! | ATATTGTTAGAAAAAGAATA+TGG | + | chr8.3:26853714-26853733 | None:intergenic | 15.0% |
!!! | ATTTTAAATAGAAATGGATA+CGG | - | chr8.3:26853269-26853288 | MS.gene87460:intron | 15.0% |
!!! | TATATATTTTGTTTAGTCAA+GGG | + | chr8.3:26853686-26853705 | None:intergenic | 15.0% |
!!! | TTATATATTTTGTTTAGTCA+AGG | + | chr8.3:26853687-26853706 | None:intergenic | 15.0% |
!!! | TCGTTCATTTTAAATAGAAA+TGG | - | chr8.3:26853263-26853282 | MS.gene87460:intron | 20.0% |
!!! | TCTTAGTTTTGTTTTTTCTT+CGG | - | chr8.3:26853181-26853200 | MS.gene87460:intron | 20.0% |
!!! | TGTTAATTATAGTTTGTCTT+TGG | - | chr8.3:26853054-26853073 | MS.gene87460:intron | 20.0% |
! | AACGTATAAATGCAATCTTT+GGG | - | chr8.3:26852905-26852924 | MS.gene87460:intron | 25.0% |
! | AAGAAAAATTGGTACAAAAG+AGG | + | chr8.3:26853215-26853234 | None:intergenic | 25.0% |
! | AATGACACTGAAGATAATTA+AGG | + | chr8.3:26853571-26853590 | None:intergenic | 25.0% |
! | AGAAAAATTGGTACAAAAGA+GGG | + | chr8.3:26853214-26853233 | None:intergenic | 25.0% |
! | GCAAAATATCATCAATGAAT+TGG | - | chr8.3:26853341-26853360 | MS.gene87460:intron | 25.0% |
! | TAACGTATAAATGCAATCTT+TGG | - | chr8.3:26852904-26852923 | MS.gene87460:intron | 25.0% |
! | TATCATCAAAAAGTAAGCTA+CGG | + | chr8.3:26853123-26853142 | None:intergenic | 25.0% |
! | TGTTAGAAAAAGAATATGGT+TGG | + | chr8.3:26853710-26853729 | None:intergenic | 25.0% |
! | TTCATTCATTCATCAACAAA+TGG | - | chr8.3:26853741-26853760 | MS.gene87460:intron | 25.0% |
! | TTTCATATATCTTTGTCAAG+TGG | + | chr8.3:26853440-26853459 | None:intergenic | 25.0% |
!!! | CTTAGTTTTGTTTTTTCTTC+GGG | - | chr8.3:26853182-26853201 | MS.gene87460:intron | 25.0% |
ACGTATAAATGCAATCTTTG+GGG | - | chr8.3:26852906-26852925 | MS.gene87460:intron | 30.0% | |
GGATTCTTATAGTTATTCTG+TGG | - | chr8.3:26853075-26853094 | MS.gene87460:intron | 30.0% | |
TAATTCAGTTCCTTATATGC+TGG | + | chr8.3:26853642-26853661 | None:intergenic | 30.0% | |
TATCATCAATGAATTGGCTA+AGG | - | chr8.3:26853347-26853366 | MS.gene87460:intron | 30.0% | |
TTCTTATAGTTATTCTGTGG+TGG | - | chr8.3:26853078-26853097 | MS.gene87460:intron | 30.0% | |
! | AGACGTATTCACAATCTTTT+GGG | - | chr8.3:26852968-26852987 | MS.gene87460:intron | 30.0% |
!! | ACTTTTTGATGATATTTCCG+AGG | - | chr8.3:26853129-26853148 | MS.gene87460:intron | 30.0% |
!! | ATTTTAGTGAGAGAAAGTTG+AGG | - | chr8.3:26852806-26852825 | MS.gene87460:intron | 30.0% |
!! | TATTTTGTTTAGTCAAGGGA+AGG | + | chr8.3:26853682-26853701 | None:intergenic | 30.0% |
!!! | TAGTTTTGTAACGAGGAAAA+GGG | + | chr8.3:26853945-26853964 | None:intergenic | 30.0% |
!!! | TATTCACAATCTTTTGGGTT+TGG | - | chr8.3:26852973-26852992 | MS.gene87460:intron | 30.0% |
!!! | TTAGTTTTGTAACGAGGAAA+AGG | + | chr8.3:26853946-26853965 | None:intergenic | 30.0% |
ATAGAGAAACTCCAGAAAGA+TGG | - | chr8.3:26853821-26853840 | MS.gene87460:intron | 35.0% | |
CAAACTGTTTGAACAAGCAT+TGG | - | chr8.3:26853789-26853808 | MS.gene87460:intron | 35.0% | |
CGTATAAATGCAATCTTTGG+GGG | - | chr8.3:26852907-26852926 | MS.gene87460:intron | 35.0% | |
GTATAAATGCAATCTTTGGG+GGG | - | chr8.3:26852908-26852927 | MS.gene87460:intron | 35.0% | |
TACGTTGAACATCTTCTTTG+AGG | + | chr8.3:26853906-26853925 | None:intergenic | 35.0% | |
TGAATACGTCTCACCAAAAT+GGG | + | chr8.3:26852959-26852978 | None:intergenic | 35.0% | |
TTATAGTTATTCTGTGGTGG+AGG | - | chr8.3:26853081-26853100 | MS.gene87460:intron | 35.0% | |
! | GAGACGTATTCACAATCTTT+TGG | - | chr8.3:26852967-26852986 | MS.gene87460:intron | 35.0% |
! | TATAAATGCAATCTTTGGGG+GGG | - | chr8.3:26852909-26852928 | MS.gene87460:intron | 35.0% |
!! | AACTGATTTTCCAACCACTT+TGG | + | chr8.3:26853857-26853876 | None:intergenic | 35.0% |
!! | GTGTCATTTGTGGTTCTTAA+GGG | - | chr8.3:26853536-26853555 | MS.gene87460:intron | 35.0% |
!!! | ACAATCTTTTGGGTTTGGAT+TGG | - | chr8.3:26852978-26852997 | MS.gene87460:intron | 35.0% |
!!! | CACTTTTTCTCCAGCATATA+AGG | - | chr8.3:26853629-26853648 | MS.gene87460:intron | 35.0% |
!!! | TTGGTGTTAGTTTTGTAACG+AGG | + | chr8.3:26853952-26853971 | None:intergenic | 35.0% |
!!! | TTTGTTTTTTCTTCGGGCTT+AGG | - | chr8.3:26853188-26853207 | MS.gene87460:intron | 35.0% |
ACAATAAGTTGTGGAATGCG+GGG | + | chr8.3:26852852-26852871 | None:intergenic | 40.0% | |
ATCAACAAATGGCAACCTCA+TGG | - | chr8.3:26853752-26853771 | MS.gene87460:intron | 40.0% | |
CACAATAAGTTGTGGAATGC+GGG | + | chr8.3:26852853-26852872 | None:intergenic | 40.0% | |
CATCAAAAAGTAAGCTACGG+AGG | + | chr8.3:26853120-26853139 | None:intergenic | 40.0% | |
CCACAATAAGTTGTGGAATG+CGG | + | chr8.3:26852854-26852873 | None:intergenic | 40.0% | |
GTGAATACGTCTCACCAAAA+TGG | + | chr8.3:26852960-26852979 | None:intergenic | 40.0% | |
TAACAAGTCATGCAGCACTT+CGG | + | chr8.3:26853039-26853058 | None:intergenic | 40.0% | |
TCACTCTCCACAATAAGTTG+TGG | + | chr8.3:26852861-26852880 | None:intergenic | 40.0% | |
TGTAACGAGGAAAAGGGATA+TGG | + | chr8.3:26853939-26853958 | None:intergenic | 40.0% | |
TGTTTAGTCAAGGGAAGGTA+TGG | + | chr8.3:26853677-26853696 | None:intergenic | 40.0% | |
! | AAAAGTGCATGTCATCTTCG+TGG | + | chr8.3:26853616-26853635 | None:intergenic | 40.0% |
! | ATAAATGCAATCTTTGGGGG+GGG | - | chr8.3:26852910-26852929 | MS.gene87460:intron | 40.0% |
! | CATCCTTTCGTGGTTCATTT+TGG | + | chr8.3:26853411-26853430 | None:intergenic | 40.0% |
! | GTTTAGTCAAGGGAAGGTAT+GGG | + | chr8.3:26853676-26853695 | None:intergenic | 40.0% |
! | TTTCTTCCTCAGTTTAGCTC+TGG | + | chr8.3:26852631-26852650 | None:intergenic | 40.0% |
!! | AACTAGCTTGGTGTCATTTG+TGG | - | chr8.3:26853526-26853545 | MS.gene87460:intron | 40.0% |
!! | GGTGTCATTTGTGGTTCTTA+AGG | - | chr8.3:26853535-26853554 | MS.gene87460:intron | 40.0% |
!! | TCTGGAATAGCTTTAGAGAG+TGG | - | chr8.3:26852771-26852790 | MS.gene87460:intron | 40.0% |
!!! | GTTCATTTTGGTGCTCTTCT+TGG | + | chr8.3:26853399-26853418 | None:intergenic | 40.0% |
ACTACTAGGCATGCAAACCT+CGG | + | chr8.3:26853149-26853168 | None:intergenic | 45.0% | |
AGGAAGAAAACGATCCAACG+AGG | - | chr8.3:26852642-26852661 | MS.gene87460:CDS | 45.0% | |
AGTAAGCTACGGAGGTCATT+AGG | + | chr8.3:26853112-26853131 | None:intergenic | 45.0% | |
AGTTCTTCATACTTTGCGCG+AGG | - | chr8.3:26853009-26853028 | MS.gene87460:intron | 45.0% | |
ATGGCACAATGTTGCCAAAG+TGG | - | chr8.3:26853840-26853859 | MS.gene87460:intron | 45.0% | |
CACAATGTTGCCAAAGTGGT+TGG | - | chr8.3:26853844-26853863 | MS.gene87460:intron | 45.0% | |
CCGCATTCCACAACTTATTG+TGG | - | chr8.3:26852851-26852870 | MS.gene87460:intron | 45.0% | |
CGCGCAAAGTATGAAGAACT+TGG | + | chr8.3:26853009-26853028 | None:intergenic | 45.0% | |
CTTCTTGGAGGTTATGTAGC+TGG | + | chr8.3:26853384-26853403 | None:intergenic | 45.0% | |
GAAGCTAGCAGAACACTACT+AGG | + | chr8.3:26853163-26853182 | None:intergenic | 45.0% | |
GATGTTCAACGTATTGAGCG+TGG | - | chr8.3:26853913-26853932 | MS.gene87460:CDS | 45.0% | |
GCAACATTGTGCCATCTTTC+TGG | + | chr8.3:26853835-26853854 | None:intergenic | 45.0% | |
GCACCAAAATGAACCACGAA+AGG | - | chr8.3:26853405-26853424 | MS.gene87460:intron | 45.0% | |
GGAAGAAAACGATCCAACGA+GGG | - | chr8.3:26852643-26852662 | MS.gene87460:CDS | 45.0% | |
GTGGGAGATTTGGAGAAGAA+GGG | - | chr8.3:26852734-26852753 | MS.gene87460:CDS | 45.0% | |
GTTCTTCATACTTTGCGCGA+GGG | - | chr8.3:26853010-26853029 | MS.gene87460:intron | 45.0% | |
TGACACCAAGCTAGTTGAAG+AGG | + | chr8.3:26853522-26853541 | None:intergenic | 45.0% | |
! | CAAGGGAAGGTATGGGAAAA+TGG | + | chr8.3:26853669-26853688 | None:intergenic | 45.0% |
! | TAAATGCAATCTTTGGGGGG+GGG | - | chr8.3:26852911-26852930 | MS.gene87460:intron | 45.0% |
!! | TAGCTTTAGAGAGTGGTCAG+AGG | - | chr8.3:26852778-26852797 | MS.gene87460:intron | 45.0% |
!!! | CATTTTGGTGCTCTTCTTGG+AGG | + | chr8.3:26853396-26853415 | None:intergenic | 45.0% |
!!! | TCTTTTGGGTTTGGATTGGC+AGG | - | chr8.3:26852982-26853001 | MS.gene87460:intron | 45.0% |
AACGATCCAACGAGGGTTGA+AGG | - | chr8.3:26852650-26852669 | MS.gene87460:CDS | 50.0% | |
AAGCTACGGAGGTCATTAGG+AGG | + | chr8.3:26853109-26853128 | None:intergenic | 50.0% | |
ACGATCCAACGAGGGTTGAA+GGG | - | chr8.3:26852651-26852670 | MS.gene87460:CDS | 50.0% | |
AGTGCATGTCATCTTCGTGG+AGG | + | chr8.3:26853613-26853632 | None:intergenic | 50.0% | |
CACCAAGCTAGTTGAAGAGG+AGG | + | chr8.3:26853519-26853538 | None:intergenic | 50.0% | |
CTCCTCCTCTTCAACTAGCT+TGG | - | chr8.3:26853514-26853533 | MS.gene87460:intron | 50.0% | |
GCGAAACCAGAGCTAAACTG+AGG | - | chr8.3:26852622-26852641 | MS.gene87460:CDS | 50.0% | |
GGAGATTTGGAGAAGAAGGG+AGG | - | chr8.3:26852737-26852756 | MS.gene87460:intron | 50.0% | |
GGTGGGAGATTTGGAGAAGA+AGG | - | chr8.3:26852733-26852752 | MS.gene87460:CDS | 50.0% | |
GTGGAGTGTACATCCTTTCG+TGG | + | chr8.3:26853421-26853440 | None:intergenic | 50.0% | |
TACATCGGAGGTGGGAGATT+TGG | - | chr8.3:26852724-26852743 | MS.gene87460:CDS | 50.0% | |
TTGGAGAAGAAGGGAGGAAG+TGG | - | chr8.3:26852743-26852762 | MS.gene87460:intron | 50.0% | |
! | AAATGCAATCTTTGGGGGGG+GGG | - | chr8.3:26852912-26852931 | MS.gene87460:intron | 50.0% |
!! | CAGTTTAGCTCTGGTTTCGC+TGG | + | chr8.3:26852622-26852641 | None:intergenic | 50.0% |
ACGAGGGTTGAAGGGTGAGA+AGG | - | chr8.3:26852659-26852678 | MS.gene87460:CDS | 55.0% | |
AGGGAGGAAGTGGTGGTTTC+TGG | - | chr8.3:26852753-26852772 | MS.gene87460:intron | 55.0% | |
AGGGTTGAAGGGTGAGAAGG+TGG | - | chr8.3:26852662-26852681 | MS.gene87460:CDS | 55.0% | |
GAGAAGAAGGGAGGAAGTGG+TGG | - | chr8.3:26852746-26852765 | MS.gene87460:intron | 55.0% | |
TCTCACCCTTCAACCCTCGT+TGG | + | chr8.3:26852659-26852678 | None:intergenic | 55.0% | |
TGAAGGGTGAGAAGGTGGTG+CGG | - | chr8.3:26852667-26852686 | MS.gene87460:CDS | 55.0% | |
! | AATGCAATCTTTGGGGGGGG+GGG | - | chr8.3:26852913-26852932 | MS.gene87460:intron | 55.0% |
! | GGGGGGGATTGTTCCCATTT+TGG | - | chr8.3:26852943-26852962 | MS.gene87460:intron | 55.0% |
ACCGGAGCTACATCGGAGGT+GGG | - | chr8.3:26852716-26852735 | MS.gene87460:CDS | 60.0% | |
CACCACCACCGGAGCTACAT+CGG | - | chr8.3:26852709-26852728 | MS.gene87460:CDS | 60.0% | |
CCTCATCACACCACCACCAC+CGG | - | chr8.3:26852698-26852717 | MS.gene87460:CDS | 60.0% | |
GTTCTGCCTCGCAGTCCATG+AGG | + | chr8.3:26853770-26853789 | None:intergenic | 60.0% | |
TCCCACCTCCGATGTAGCTC+CGG | + | chr8.3:26852720-26852739 | None:intergenic | 60.0% | |
! | ATGCAATCTTTGGGGGGGGG+GGG | - | chr8.3:26852914-26852933 | MS.gene87460:intron | 60.0% |
! | TGGCAACCTCATGGACTGCG+AGG | - | chr8.3:26853761-26853780 | MS.gene87460:intron | 60.0% |
AGGGTGAGAAGGTGGTGCGG+AGG | - | chr8.3:26852670-26852689 | MS.gene87460:CDS | 65.0% | |
CACCACCGGAGCTACATCGG+AGG | - | chr8.3:26852712-26852731 | MS.gene87460:CDS | 65.0% | |
CACCGGAGCTACATCGGAGG+TGG | - | chr8.3:26852715-26852734 | MS.gene87460:CDS | 65.0% | |
CACCTCCGATGTAGCTCCGG+TGG | + | chr8.3:26852717-26852736 | None:intergenic | 65.0% | |
CTCCGATGTAGCTCCGGTGG+TGG | + | chr8.3:26852714-26852733 | None:intergenic | 65.0% | |
! | CGATGTAGCTCCGGTGGTGG+TGG | + | chr8.3:26852711-26852730 | None:intergenic | 65.0% |
! | TGCAATCTTTGGGGGGGGGG+GGG | - | chr8.3:26852915-26852934 | MS.gene87460:intron | 65.0% |
!! | CCGGTGGTGGTGGTGTGATG+AGG | + | chr8.3:26852701-26852720 | None:intergenic | 65.0% |
! | AATCTTTGGGGGGGGGGGGG+GGG | - | chr8.3:26852918-26852937 | MS.gene87460:intron | 70.0% |
! | CAATCTTTGGGGGGGGGGGG+GGG | - | chr8.3:26852917-26852936 | MS.gene87460:intron | 70.0% |
! | GCAATCTTTGGGGGGGGGGG+GGG | - | chr8.3:26852916-26852935 | MS.gene87460:intron | 70.0% |
! | ATCTTTGGGGGGGGGGGGGG+GGG | - | chr8.3:26852919-26852938 | MS.gene87460:intron | 75.0% |
!! | TCTTTGGGGGGGGGGGGGGG+GGG | - | chr8.3:26852920-26852939 | MS.gene87460:intron | 80.0% |
! | TTTGGGGGGGGGGGGGGGGG+GGG | - | chr8.3:26852922-26852941 | MS.gene87460:intron | 85.0% |
!! | CTTTGGGGGGGGGGGGGGGG+GGG | - | chr8.3:26852921-26852940 | MS.gene87460:intron | 85.0% |
! | TTGGGGGGGGGGGGGGGGGG+GGG | - | chr8.3:26852923-26852942 | MS.gene87460:intron | 90.0% |
! | TGGGGGGGGGGGGGGGGGGG+GGG | - | chr8.3:26852924-26852943 | MS.gene87460:intron | 95.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 26852600 | 26853978 | 26852600 | ID=MS.gene87460 |
chr8.3 | mRNA | 26852600 | 26853978 | 26852600 | ID=MS.gene87460.t1;Parent=MS.gene87460 |
chr8.3 | exon | 26853845 | 26853978 | 26853845 | ID=MS.gene87460.t1.exon1;Parent=MS.gene87460.t1 |
chr8.3 | CDS | 26853845 | 26853978 | 26853845 | ID=cds.MS.gene87460.t1;Parent=MS.gene87460.t1 |
chr8.3 | exon | 26852600 | 26852753 | 26852600 | ID=MS.gene87460.t1.exon2;Parent=MS.gene87460.t1 |
chr8.3 | CDS | 26852600 | 26852753 | 26852600 | ID=cds.MS.gene87460.t1;Parent=MS.gene87460.t1 |
Gene Sequence |
Protein sequence |